Query 016992
Match_columns 379
No_of_seqs 468 out of 4002
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 8.1E-58 1.7E-62 417.7 25.5 301 79-379 17-346 (346)
2 KOG1500 Protein arginine N-met 100.0 4.3E-37 9.3E-42 276.2 17.1 280 81-365 136-451 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 4.4E-35 9.5E-40 285.7 20.2 252 96-365 152-448 (448)
4 KOG0822 Protein kinase inhibit 99.9 2.6E-21 5.6E-26 184.1 17.5 249 99-365 337-625 (649)
5 COG2226 UbiE Methylase involve 99.8 1.9E-20 4.1E-25 167.1 12.2 116 107-226 36-153 (238)
6 PF01209 Ubie_methyltran: ubiE 99.8 1.8E-20 3.9E-25 168.9 9.6 114 109-226 34-150 (233)
7 COG2227 UbiG 2-polyprenyl-3-me 99.8 7.5E-20 1.6E-24 160.4 6.3 154 67-231 9-163 (243)
8 PLN02396 hexaprenyldihydroxybe 99.8 1.7E-18 3.8E-23 162.7 13.8 154 68-229 74-235 (322)
9 PF12847 Methyltransf_18: Meth 99.8 5.2E-18 1.1E-22 135.7 12.7 107 122-229 1-111 (112)
10 KOG1501 Arginine N-methyltrans 99.8 3.5E-18 7.5E-23 159.4 11.4 228 97-329 35-320 (636)
11 KOG1540 Ubiquinone biosynthesi 99.7 1.7E-17 3.6E-22 145.5 10.2 115 109-226 87-211 (296)
12 KOG1270 Methyltransferases [Co 99.7 7.6E-18 1.6E-22 148.7 6.1 149 70-229 34-195 (282)
13 PLN02233 ubiquinone biosynthes 99.7 4.8E-16 1E-20 143.1 14.0 117 109-228 60-181 (261)
14 PF13847 Methyltransf_31: Meth 99.7 1.5E-15 3.2E-20 128.6 13.1 102 121-227 2-108 (152)
15 PF08241 Methyltransf_11: Meth 99.7 7.3E-16 1.6E-20 118.9 10.2 94 127-227 1-95 (95)
16 PLN02244 tocopherol O-methyltr 99.7 1.4E-15 2.9E-20 145.4 14.1 105 121-228 117-222 (340)
17 PRK00107 gidB 16S rRNA methylt 99.7 1.9E-15 4.2E-20 131.5 13.8 98 121-227 44-143 (187)
18 PTZ00357 methyltransferase; Pr 99.7 5.4E-15 1.2E-19 145.0 18.0 262 97-364 642-1037(1072)
19 TIGR02752 MenG_heptapren 2-hep 99.6 2E-15 4.3E-20 136.7 13.9 117 107-227 30-149 (231)
20 PRK14903 16S rRNA methyltransf 99.6 2E-15 4.4E-20 148.2 12.6 138 82-232 209-369 (431)
21 PRK11207 tellurite resistance 99.6 4.1E-15 8.9E-20 131.3 13.2 104 119-226 27-131 (197)
22 PRK14901 16S rRNA methyltransf 99.6 2.9E-15 6.3E-20 147.8 13.0 116 118-234 248-389 (434)
23 TIGR00446 nop2p NOL1/NOP2/sun 99.6 3.5E-15 7.6E-20 137.6 12.4 139 83-234 44-204 (264)
24 TIGR00563 rsmB ribosomal RNA s 99.6 3.7E-15 8E-20 146.7 13.2 120 115-234 231-373 (426)
25 PF06325 PrmA: Ribosomal prote 99.6 2.5E-15 5.5E-20 139.1 10.9 111 105-227 146-257 (295)
26 TIGR00477 tehB tellurite resis 99.6 6.7E-15 1.5E-19 129.7 12.7 103 119-226 27-130 (195)
27 PF03848 TehB: Tellurite resis 99.6 1.4E-14 3E-19 125.5 14.3 105 118-227 26-131 (192)
28 COG2264 PrmA Ribosomal protein 99.6 3.4E-15 7.3E-20 136.9 11.0 114 105-227 147-261 (300)
29 PRK10901 16S rRNA methyltransf 99.6 7.8E-15 1.7E-19 144.4 13.7 115 118-234 240-377 (427)
30 TIGR00138 gidB 16S rRNA methyl 99.6 1.3E-14 2.8E-19 126.1 12.9 98 121-227 41-140 (181)
31 PRK11036 putative S-adenosyl-L 99.6 6.3E-15 1.4E-19 135.5 11.6 103 121-227 43-147 (255)
32 PF02353 CMAS: Mycolic acid cy 99.6 1.3E-14 2.8E-19 133.8 13.4 113 111-228 51-165 (273)
33 COG2230 Cfa Cyclopropane fatty 99.6 1E-14 2.2E-19 132.7 11.9 114 111-228 61-175 (283)
34 PF05175 MTS: Methyltransferas 99.6 4.9E-14 1.1E-18 121.5 14.9 103 122-226 31-137 (170)
35 PRK15068 tRNA mo(5)U34 methylt 99.6 2.4E-14 5.1E-19 135.5 12.9 110 115-228 115-225 (322)
36 PF13659 Methyltransf_26: Meth 99.6 2E-14 4.3E-19 115.8 10.4 104 123-227 1-113 (117)
37 PRK14902 16S rRNA methyltransf 99.6 2.5E-14 5.3E-19 141.7 12.9 115 118-234 246-384 (444)
38 TIGR00452 methyltransferase, p 99.6 3.8E-14 8.1E-19 132.9 13.3 111 114-228 113-224 (314)
39 PRK15451 tRNA cmo(5)U34 methyl 99.6 2.5E-14 5.5E-19 130.8 11.1 107 120-229 54-164 (247)
40 TIGR02469 CbiT precorrin-6Y C5 99.6 1.2E-13 2.6E-18 112.2 14.0 106 116-228 13-121 (124)
41 PTZ00098 phosphoethanolamine N 99.5 3.8E-14 8.2E-19 130.7 12.0 111 114-228 44-155 (263)
42 PF13649 Methyltransf_25: Meth 99.5 1.7E-14 3.8E-19 113.2 8.3 96 126-223 1-101 (101)
43 PRK11873 arsM arsenite S-adeno 99.5 6E-14 1.3E-18 130.3 13.0 106 119-228 74-182 (272)
44 PF05401 NodS: Nodulation prot 99.5 3.3E-14 7.2E-19 121.7 9.7 122 118-256 39-161 (201)
45 TIGR00406 prmA ribosomal prote 99.5 1.1E-13 2.4E-18 129.3 14.1 100 120-227 157-257 (288)
46 COG4123 Predicted O-methyltran 99.5 4.8E-14 1E-18 126.1 10.4 108 118-226 40-167 (248)
47 PRK10258 biotin biosynthesis p 99.5 7.5E-14 1.6E-18 128.0 12.1 105 114-228 34-139 (251)
48 PRK12335 tellurite resistance 99.5 9.3E-14 2E-18 129.9 12.6 101 121-226 119-220 (287)
49 PRK14103 trans-aconitate 2-met 99.5 8.4E-14 1.8E-18 128.0 11.8 103 114-228 21-125 (255)
50 PRK13944 protein-L-isoaspartat 99.5 2.1E-13 4.6E-18 121.1 13.5 106 113-227 63-171 (205)
51 PLN02336 phosphoethanolamine N 99.5 2.3E-13 4.9E-18 136.3 13.6 106 118-228 262-368 (475)
52 PRK15001 SAM-dependent 23S rib 99.5 3.6E-13 7.8E-18 129.0 14.3 106 121-227 227-338 (378)
53 TIGR00740 methyltransferase, p 99.5 2.6E-13 5.7E-18 123.5 12.8 106 121-229 52-161 (239)
54 PRK01683 trans-aconitate 2-met 99.5 2.1E-13 4.6E-18 125.6 12.2 105 114-228 23-129 (258)
55 PRK00121 trmB tRNA (guanine-N( 99.5 1.9E-13 4.1E-18 121.1 11.4 105 122-227 40-154 (202)
56 COG4076 Predicted RNA methylas 99.5 2.6E-14 5.6E-19 119.7 5.4 137 95-240 9-146 (252)
57 smart00828 PKS_MT Methyltransf 99.5 1.4E-13 3E-18 124.1 10.5 101 124-228 1-103 (224)
58 PRK05134 bifunctional 3-demeth 99.5 1.4E-13 3.1E-18 124.8 10.6 147 68-228 2-150 (233)
59 PRK08287 cobalt-precorrin-6Y C 99.5 6.6E-13 1.4E-17 116.3 14.3 101 118-227 27-129 (187)
60 PRK00377 cbiT cobalt-precorrin 99.5 4.2E-13 9.2E-18 118.6 13.1 107 116-228 34-144 (198)
61 TIGR03533 L3_gln_methyl protei 99.5 3.2E-13 6.9E-18 125.8 12.7 106 121-228 120-250 (284)
62 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.1E-13 4.6E-18 128.8 11.3 100 121-227 112-213 (340)
63 COG2242 CobL Precorrin-6B meth 99.5 6.5E-13 1.4E-17 112.9 13.1 107 114-228 26-134 (187)
64 TIGR01177 conserved hypothetic 99.5 3.8E-13 8.2E-18 128.2 13.0 114 111-227 171-292 (329)
65 PRK14904 16S rRNA methyltransf 99.5 5.3E-13 1.2E-17 132.1 14.3 114 118-233 246-381 (445)
66 PRK00517 prmA ribosomal protei 99.5 4.2E-13 9E-18 122.9 12.5 95 120-228 117-212 (250)
67 TIGR00080 pimt protein-L-isoas 99.5 4.5E-13 9.7E-18 120.0 12.2 104 114-227 69-175 (215)
68 PRK13942 protein-L-isoaspartat 99.5 4.8E-13 1E-17 119.4 12.1 104 114-227 68-174 (212)
69 PRK06922 hypothetical protein; 99.5 5E-13 1.1E-17 133.8 12.8 108 119-228 415-536 (677)
70 PRK08317 hypothetical protein; 99.5 1.2E-12 2.5E-17 118.8 14.2 115 110-229 7-124 (241)
71 PRK14967 putative methyltransf 99.5 9.8E-13 2.1E-17 118.5 13.6 105 119-227 33-157 (223)
72 PRK15128 23S rRNA m(5)C1962 me 99.5 6.7E-13 1.5E-17 128.6 13.0 113 121-234 219-344 (396)
73 TIGR00537 hemK_rel_arch HemK-r 99.5 7.2E-13 1.6E-17 115.2 11.9 103 120-227 17-138 (179)
74 PRK05785 hypothetical protein; 99.5 3.3E-13 7.2E-18 121.5 10.1 90 122-223 51-141 (226)
75 PRK11805 N5-glutamine S-adenos 99.4 6E-13 1.3E-17 125.1 11.9 102 124-227 135-261 (307)
76 PRK00216 ubiE ubiquinone/menaq 99.4 1E-12 2.2E-17 119.3 13.1 111 114-227 43-156 (239)
77 TIGR00536 hemK_fam HemK family 99.4 9.9E-13 2.2E-17 122.7 12.1 124 103-228 94-243 (284)
78 PRK11933 yebU rRNA (cytosine-C 99.4 1E-12 2.2E-17 129.4 12.5 136 85-233 86-246 (470)
79 PRK07402 precorrin-6B methylas 99.4 2.7E-12 5.9E-17 113.2 14.0 107 114-228 32-141 (196)
80 PF13489 Methyltransf_23: Meth 99.4 5E-13 1.1E-17 113.6 8.9 94 120-228 20-114 (161)
81 PF08242 Methyltransf_12: Meth 99.4 3.4E-14 7.4E-19 111.0 1.5 95 127-225 1-99 (99)
82 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.9E-12 4E-17 116.3 12.8 112 110-227 27-141 (223)
83 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.1E-12 2.4E-17 115.6 10.6 105 122-227 16-130 (194)
84 TIGR02021 BchM-ChlM magnesium 99.4 3.5E-12 7.6E-17 114.6 13.6 103 120-227 53-156 (219)
85 PRK14966 unknown domain/N5-glu 99.4 2.6E-12 5.7E-17 123.3 13.1 127 96-227 227-379 (423)
86 PRK01544 bifunctional N5-gluta 99.4 1.5E-12 3.3E-17 130.3 12.0 133 94-228 86-268 (506)
87 KOG1271 Methyltransferases [Ge 99.4 1.4E-12 3.1E-17 109.0 9.4 108 125-232 70-184 (227)
88 TIGR01983 UbiG ubiquinone bios 99.4 5.6E-12 1.2E-16 113.5 13.8 137 85-228 10-148 (224)
89 KOG4300 Predicted methyltransf 99.4 1.8E-12 3.9E-17 110.6 9.6 100 124-227 78-180 (252)
90 PLN03075 nicotianamine synthas 99.4 6.6E-12 1.4E-16 115.7 14.1 105 122-228 123-232 (296)
91 PRK04266 fibrillarin; Provisio 99.4 5.3E-12 1.1E-16 113.3 13.2 101 118-227 68-174 (226)
92 PRK11705 cyclopropane fatty ac 99.4 3.9E-12 8.5E-17 123.1 12.7 109 112-228 157-266 (383)
93 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2.2E-12 4.8E-17 134.2 11.8 109 121-230 537-657 (702)
94 TIGR02072 BioC biotin biosynth 99.4 5.1E-12 1.1E-16 114.6 12.5 100 121-228 33-134 (240)
95 PRK09489 rsmC 16S ribosomal RN 99.4 6.1E-12 1.3E-16 119.8 13.4 102 122-227 196-301 (342)
96 PF08003 Methyltransf_9: Prote 99.4 4.7E-12 1E-16 115.4 11.6 112 114-229 107-219 (315)
97 TIGR03587 Pse_Me-ase pseudamin 99.4 7.4E-12 1.6E-16 110.9 12.5 97 120-226 41-139 (204)
98 PRK00312 pcm protein-L-isoaspa 99.4 1E-11 2.2E-16 111.0 13.1 103 114-227 70-173 (212)
99 TIGR03534 RF_mod_PrmC protein- 99.4 1.1E-11 2.3E-16 113.6 13.5 117 107-227 73-215 (251)
100 PRK14968 putative methyltransf 99.4 1.3E-11 2.8E-16 107.9 13.3 104 121-227 22-146 (188)
101 TIGR02716 C20_methyl_CrtF C-20 99.4 1.3E-11 2.8E-16 116.6 14.1 115 111-228 138-253 (306)
102 smart00138 MeTrc Methyltransfe 99.3 5.3E-12 1.2E-16 116.3 11.0 106 121-227 98-240 (264)
103 PRK09328 N5-glutamine S-adenos 99.3 1E-11 2.3E-16 115.4 13.1 124 101-227 87-236 (275)
104 PLN02336 phosphoethanolamine N 99.3 7.3E-12 1.6E-16 125.5 12.5 111 114-229 29-142 (475)
105 COG2519 GCD14 tRNA(1-methylade 99.3 1.3E-11 2.8E-16 109.6 12.5 105 114-227 86-193 (256)
106 COG2890 HemK Methylase of poly 99.3 1.2E-11 2.7E-16 114.5 12.7 126 97-227 86-236 (280)
107 PRK10909 rsmD 16S rRNA m(2)G96 99.3 1.6E-11 3.5E-16 107.9 12.7 103 121-228 52-158 (199)
108 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.8E-11 4E-16 108.9 13.2 101 121-226 33-149 (213)
109 COG2263 Predicted RNA methylas 99.3 1.7E-11 3.6E-16 103.9 11.9 77 117-198 40-117 (198)
110 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.2E-11 2.5E-16 118.2 12.2 108 120-228 120-234 (390)
111 COG2813 RsmC 16S RNA G1207 met 99.3 1.8E-11 3.8E-16 111.9 12.5 108 114-226 150-263 (300)
112 TIGR03704 PrmC_rel_meth putati 99.3 2.3E-11 5.1E-16 111.2 13.2 118 105-227 68-214 (251)
113 COG4106 Tam Trans-aconitate me 99.3 3.9E-12 8.5E-17 109.4 7.3 106 117-232 25-132 (257)
114 COG2518 Pcm Protein-L-isoaspar 99.3 1.5E-11 3.3E-16 106.9 11.0 103 114-227 64-167 (209)
115 PF10672 Methyltrans_SAM: S-ad 99.3 1.3E-11 2.8E-16 113.8 11.1 124 102-231 109-240 (286)
116 PLN02781 Probable caffeoyl-CoA 99.3 1.3E-11 2.9E-16 111.6 11.0 105 121-231 67-180 (234)
117 PRK11088 rrmA 23S rRNA methylt 99.3 2.3E-11 5E-16 112.9 11.2 91 121-227 84-179 (272)
118 COG1092 Predicted SAM-dependen 99.3 1.9E-11 4.2E-16 117.0 10.9 112 122-234 217-341 (393)
119 PRK06202 hypothetical protein; 99.3 3E-11 6.5E-16 109.5 11.5 101 120-226 58-164 (232)
120 PHA03412 putative methyltransf 99.3 2E-11 4.4E-16 108.4 10.0 101 122-230 49-164 (241)
121 PRK13943 protein-L-isoaspartat 99.3 4.9E-11 1.1E-15 112.3 13.1 104 114-227 72-178 (322)
122 PRK11188 rrmJ 23S rRNA methylt 99.3 3.1E-11 6.8E-16 107.3 11.0 97 120-227 49-163 (209)
123 PF01135 PCMT: Protein-L-isoas 99.3 1.6E-11 3.6E-16 108.6 9.0 103 114-226 64-169 (209)
124 PRK04457 spermidine synthase; 99.3 3.1E-11 6.7E-16 111.1 10.9 107 121-227 65-175 (262)
125 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.3 1.5E-11 3.3E-16 114.3 8.8 180 22-232 15-222 (283)
126 PRK13255 thiopurine S-methyltr 99.3 7.7E-11 1.7E-15 105.3 13.0 101 121-226 36-152 (218)
127 smart00650 rADc Ribosomal RNA 99.3 4.5E-11 9.8E-16 102.9 11.1 106 114-227 5-111 (169)
128 PRK07580 Mg-protoporphyrin IX 99.3 1.1E-10 2.3E-15 105.5 14.0 102 120-226 61-163 (230)
129 KOG2904 Predicted methyltransf 99.3 4.8E-11 1E-15 106.1 11.2 128 100-228 123-284 (328)
130 COG0144 Sun tRNA and rRNA cyto 99.3 6.4E-11 1.4E-15 113.5 13.0 138 84-234 130-293 (355)
131 TIGR00095 RNA methyltransferas 99.2 7.6E-11 1.6E-15 103.1 11.9 105 121-229 48-159 (189)
132 TIGR03438 probable methyltrans 99.2 9.3E-11 2E-15 110.3 13.3 107 121-228 62-176 (301)
133 PRK13168 rumA 23S rRNA m(5)U19 99.2 1E-10 2.2E-15 116.0 13.9 112 107-227 282-398 (443)
134 PF08704 GCD14: tRNA methyltra 99.2 8.1E-11 1.7E-15 106.3 11.3 106 113-226 31-143 (247)
135 PLN02672 methionine S-methyltr 99.2 8.7E-11 1.9E-15 124.9 13.1 136 94-230 89-279 (1082)
136 PRK03522 rumB 23S rRNA methylu 99.2 1.5E-10 3.2E-15 109.7 12.8 98 121-226 172-271 (315)
137 PTZ00146 fibrillarin; Provisio 99.2 1.4E-10 3.1E-15 106.5 11.9 102 118-227 128-235 (293)
138 cd02440 AdoMet_MTases S-adenos 99.2 1.4E-10 3.1E-15 89.8 10.3 101 125-228 1-103 (107)
139 PHA03411 putative methyltransf 99.2 1.3E-10 2.8E-15 105.7 11.2 97 122-226 64-180 (279)
140 PLN02585 magnesium protoporphy 99.2 1.7E-10 3.6E-15 108.5 12.4 100 121-226 143-247 (315)
141 PRK00811 spermidine synthase; 99.2 1.3E-10 2.8E-15 108.2 11.6 109 121-229 75-191 (283)
142 PF03602 Cons_hypoth95: Conser 99.2 7.5E-11 1.6E-15 102.4 8.7 104 121-228 41-152 (183)
143 TIGR00438 rrmJ cell division p 99.2 1.3E-10 2.8E-15 101.8 10.3 99 117-227 27-144 (188)
144 PF03291 Pox_MCEL: mRNA cappin 99.2 2.4E-10 5.2E-15 108.1 12.7 105 122-226 62-183 (331)
145 COG1041 Predicted DNA modifica 99.2 2.4E-10 5.1E-15 106.5 11.9 116 109-227 184-308 (347)
146 KOG1975 mRNA cap methyltransfe 99.2 1.3E-10 2.8E-15 105.7 9.8 119 109-227 104-235 (389)
147 COG4122 Predicted O-methyltran 99.2 2.2E-10 4.8E-15 101.1 10.7 115 107-230 47-167 (219)
148 PLN02476 O-methyltransferase 99.2 2.5E-10 5.4E-15 104.7 11.2 105 120-230 116-229 (278)
149 PF01596 Methyltransf_3: O-met 99.2 2.7E-10 5.9E-15 100.5 10.8 114 109-231 35-157 (205)
150 PF01170 UPF0020: Putative RNA 99.1 7.4E-10 1.6E-14 96.1 12.7 117 109-226 15-148 (179)
151 TIGR00479 rumA 23S rRNA (uraci 99.1 6.4E-10 1.4E-14 110.0 13.8 114 106-227 276-394 (431)
152 COG4976 Predicted methyltransf 99.1 1.4E-11 3E-16 106.8 1.5 134 85-230 88-226 (287)
153 TIGR02085 meth_trns_rumB 23S r 99.1 7.9E-10 1.7E-14 107.0 12.9 98 121-226 232-331 (374)
154 PF02475 Met_10: Met-10+ like- 99.1 5.7E-10 1.2E-14 97.8 10.4 99 120-226 99-199 (200)
155 TIGR02081 metW methionine bios 99.1 3.8E-10 8.3E-15 99.3 9.1 91 121-222 12-105 (194)
156 COG2521 Predicted archaeal met 99.1 1.1E-10 2.3E-15 101.7 5.1 119 108-226 118-242 (287)
157 PF07021 MetW: Methionine bios 99.1 5.6E-10 1.2E-14 95.7 8.8 90 120-220 11-103 (193)
158 PF10294 Methyltransf_16: Puta 99.1 6.7E-10 1.5E-14 95.8 9.0 106 118-226 41-153 (173)
159 PLN02366 spermidine synthase 99.1 1.4E-09 3.1E-14 101.9 11.8 113 121-233 90-210 (308)
160 COG0742 N6-adenine-specific me 99.0 2.6E-09 5.7E-14 91.5 11.9 106 121-230 42-155 (187)
161 PRK01581 speE spermidine synth 99.0 1.7E-09 3.8E-14 102.0 11.4 108 121-228 149-267 (374)
162 KOG2361 Predicted methyltransf 99.0 4.7E-10 1E-14 98.4 6.7 107 125-234 74-188 (264)
163 KOG2899 Predicted methyltransf 99.0 1.1E-09 2.3E-14 96.1 8.7 109 118-226 54-206 (288)
164 TIGR00417 speE spermidine synt 99.0 4.1E-09 8.8E-14 97.7 13.2 108 122-229 72-186 (270)
165 PRK13256 thiopurine S-methyltr 99.0 3.5E-09 7.5E-14 94.5 11.8 104 121-226 42-160 (226)
166 PRK11727 23S rRNA mA1618 methy 99.0 3.3E-09 7.2E-14 99.6 11.9 82 122-204 114-203 (321)
167 PLN02589 caffeoyl-CoA O-methyl 99.0 2.5E-09 5.3E-14 97.0 10.6 106 121-232 78-193 (247)
168 PF02527 GidB: rRNA small subu 99.0 8.3E-09 1.8E-13 89.4 13.1 94 125-227 51-146 (184)
169 PRK03612 spermidine synthase; 99.0 2.2E-09 4.7E-14 108.2 10.0 110 121-230 296-416 (521)
170 PTZ00338 dimethyladenosine tra 99.0 5E-09 1.1E-13 97.7 11.5 88 112-203 26-114 (294)
171 PF02390 Methyltransf_4: Putat 99.0 5.8E-09 1.3E-13 91.6 11.3 103 124-227 19-131 (195)
172 PRK04338 N(2),N(2)-dimethylgua 99.0 3.1E-09 6.7E-14 102.7 10.3 98 123-228 58-157 (382)
173 KOG3010 Methyltransferase [Gen 99.0 5.7E-10 1.2E-14 97.9 4.4 97 125-226 36-133 (261)
174 PRK14896 ksgA 16S ribosomal RN 98.9 6E-09 1.3E-13 95.9 10.2 85 111-202 18-103 (258)
175 PF05724 TPMT: Thiopurine S-me 98.9 1.2E-08 2.5E-13 91.2 11.5 107 118-226 33-152 (218)
176 KOG1541 Predicted protein carb 98.9 6.2E-09 1.3E-13 90.1 9.1 99 122-227 50-158 (270)
177 PRK00274 ksgA 16S ribosomal RN 98.9 5.1E-09 1.1E-13 97.1 9.2 84 113-202 33-117 (272)
178 TIGR02143 trmA_only tRNA (urac 98.9 1.3E-08 2.8E-13 97.7 11.7 108 108-226 184-308 (353)
179 PRK05031 tRNA (uracil-5-)-meth 98.9 1.4E-08 3E-13 97.9 11.9 109 107-226 192-317 (362)
180 KOG3420 Predicted RNA methylas 98.9 5.1E-09 1.1E-13 84.6 7.1 83 114-198 40-123 (185)
181 COG2520 Predicted methyltransf 98.9 1.2E-08 2.7E-13 95.8 9.8 101 120-227 186-287 (341)
182 PLN02232 ubiquinone biosynthes 98.9 6E-09 1.3E-13 88.8 7.0 76 149-227 1-79 (160)
183 COG2265 TrmA SAM-dependent met 98.8 2.8E-08 6E-13 97.2 12.2 115 104-226 275-393 (432)
184 KOG1122 tRNA and rRNA cytosine 98.8 1.7E-08 3.6E-13 95.3 9.7 116 117-234 236-376 (460)
185 TIGR00478 tly hemolysin TlyA f 98.8 1.4E-08 3.1E-13 90.9 8.5 98 110-226 63-168 (228)
186 COG0220 Predicted S-adenosylme 98.8 2.8E-08 6.1E-13 88.8 10.2 103 124-227 50-162 (227)
187 PRK04148 hypothetical protein; 98.8 9.7E-08 2.1E-12 77.7 11.7 101 111-226 5-108 (134)
188 PF05958 tRNA_U5-meth_tr: tRNA 98.8 5.9E-08 1.3E-12 93.2 11.8 95 106-203 181-292 (352)
189 PF09445 Methyltransf_15: RNA 98.7 3.1E-08 6.7E-13 83.6 7.7 75 124-199 1-79 (163)
190 PF00891 Methyltransf_2: O-met 98.7 2.2E-07 4.7E-12 84.7 13.8 105 112-227 90-197 (241)
191 TIGR00755 ksgA dimethyladenosi 98.7 1.3E-07 2.8E-12 86.8 12.3 81 112-198 19-103 (253)
192 KOG0820 Ribosomal RNA adenine 98.7 5.6E-08 1.2E-12 86.8 9.2 87 109-198 45-132 (315)
193 COG0116 Predicted N6-adenine-s 98.7 1.7E-07 3.6E-12 88.8 12.8 121 107-228 176-343 (381)
194 PLN02823 spermine synthase 98.7 6.8E-08 1.5E-12 91.6 10.1 107 122-228 103-219 (336)
195 COG0357 GidB Predicted S-adeno 98.7 9.5E-08 2.1E-12 84.3 10.3 95 123-226 68-165 (215)
196 PF05891 Methyltransf_PK: AdoM 98.7 2.9E-08 6.3E-13 86.8 6.9 104 122-227 55-159 (218)
197 TIGR00308 TRM1 tRNA(guanine-26 98.7 8.3E-08 1.8E-12 92.3 10.3 98 123-228 45-146 (374)
198 COG0030 KsgA Dimethyladenosine 98.7 1.6E-07 3.6E-12 84.9 10.7 88 111-203 19-108 (259)
199 COG3897 Predicted methyltransf 98.7 8.1E-08 1.7E-12 81.9 7.9 106 110-224 67-173 (218)
200 COG0421 SpeE Spermidine syntha 98.6 2.1E-07 4.6E-12 85.9 10.9 112 124-235 78-196 (282)
201 PF12147 Methyltransf_20: Puta 98.6 6.5E-07 1.4E-11 81.3 13.6 108 121-228 134-248 (311)
202 PF01739 CheR: CheR methyltran 98.6 1.2E-07 2.6E-12 83.1 8.5 105 122-227 31-173 (196)
203 PF05219 DREV: DREV methyltran 98.6 2.9E-07 6.3E-12 82.5 10.7 103 122-238 94-197 (265)
204 PRK11783 rlmL 23S rRNA m(2)G24 98.6 3E-07 6.5E-12 96.1 12.4 119 107-226 174-344 (702)
205 COG3963 Phospholipid N-methylt 98.6 2.9E-07 6.3E-12 76.4 9.6 110 111-227 37-154 (194)
206 KOG1661 Protein-L-isoaspartate 98.6 1.4E-07 3E-12 81.3 8.0 98 120-226 80-190 (237)
207 PF06080 DUF938: Protein of un 98.6 2.4E-07 5.2E-12 80.7 9.5 103 123-226 26-138 (204)
208 KOG3191 Predicted N6-DNA-methy 98.6 6.4E-07 1.4E-11 75.5 11.3 100 123-226 44-165 (209)
209 PF01564 Spermine_synth: Sperm 98.6 3.7E-07 8E-12 83.2 10.4 107 121-227 75-189 (246)
210 KOG3045 Predicted RNA methylas 98.6 8.1E-08 1.8E-12 85.1 5.6 84 121-227 179-262 (325)
211 KOG2915 tRNA(1-methyladenosine 98.6 6.8E-07 1.5E-11 80.0 11.1 105 114-226 97-207 (314)
212 KOG1663 O-methyltransferase [S 98.6 6.4E-07 1.4E-11 78.5 10.8 109 120-234 71-188 (237)
213 PRK10611 chemotaxis methyltran 98.5 2.5E-07 5.3E-12 85.8 8.1 105 123-228 116-261 (287)
214 COG1189 Predicted rRNA methyla 98.5 6.9E-07 1.5E-11 78.9 9.3 106 109-226 66-175 (245)
215 PF08123 DOT1: Histone methyla 98.5 1E-06 2.2E-11 77.8 10.4 108 115-226 35-155 (205)
216 PF05148 Methyltransf_8: Hypot 98.5 2.6E-07 5.7E-12 80.1 6.1 94 109-226 62-155 (219)
217 PRK01544 bifunctional N5-gluta 98.5 7.9E-07 1.7E-11 89.4 10.3 105 122-227 347-460 (506)
218 KOG2187 tRNA uracil-5-methyltr 98.4 8.4E-07 1.8E-11 86.1 9.3 123 103-233 364-493 (534)
219 PRK11760 putative 23S rRNA C24 98.4 1.6E-06 3.4E-11 81.1 10.8 88 120-222 209-296 (357)
220 KOG2940 Predicted methyltransf 98.4 1.3E-07 2.9E-12 82.3 3.2 99 123-227 73-172 (325)
221 PRK00536 speE spermidine synth 98.4 1.2E-06 2.6E-11 80.0 9.4 102 121-234 71-176 (262)
222 PF07942 N2227: N2227-like pro 98.4 2.9E-06 6.3E-11 77.6 11.9 101 122-226 56-199 (270)
223 COG0293 FtsJ 23S rRNA methylas 98.4 1.3E-06 2.8E-11 76.2 8.3 98 118-226 41-156 (205)
224 PRK00050 16S rRNA m(4)C1402 me 98.4 1E-06 2.2E-11 81.8 7.9 81 114-197 11-98 (296)
225 KOG1501 Arginine N-methyltrans 98.4 5.4E-07 1.2E-11 85.3 5.9 204 145-363 389-632 (636)
226 PF02384 N6_Mtase: N-6 DNA Met 98.4 2.6E-06 5.7E-11 80.6 10.6 113 113-226 37-180 (311)
227 PF01728 FtsJ: FtsJ-like methy 98.4 6.4E-07 1.4E-11 77.9 5.7 94 122-226 23-136 (181)
228 COG1352 CheR Methylase of chem 98.3 4.5E-06 9.8E-11 76.4 9.9 104 123-227 97-239 (268)
229 PF03141 Methyltransf_29: Puta 98.2 8.5E-07 1.8E-11 86.2 4.2 119 106-233 97-223 (506)
230 KOG2730 Methylase [General fun 98.2 1.1E-06 2.3E-11 76.3 4.3 98 122-223 94-196 (263)
231 PF00398 RrnaAD: Ribosomal RNA 98.2 6.2E-06 1.3E-10 76.1 9.0 85 110-198 18-106 (262)
232 PF01269 Fibrillarin: Fibrilla 98.2 2.6E-05 5.7E-10 68.5 12.1 102 118-227 69-176 (229)
233 PRK10742 putative methyltransf 98.1 1.5E-05 3.3E-10 71.6 9.8 85 114-199 78-174 (250)
234 KOG1269 SAM-dependent methyltr 98.1 4.5E-06 9.8E-11 79.8 6.5 107 118-227 106-213 (364)
235 PF04816 DUF633: Family of unk 98.1 2E-05 4.4E-10 69.6 10.1 96 126-226 1-98 (205)
236 PF13578 Methyltransf_24: Meth 98.1 2.3E-06 4.9E-11 67.5 2.9 99 127-229 1-105 (106)
237 PF13679 Methyltransf_32: Meth 98.1 1.8E-05 3.9E-10 65.8 7.9 75 120-195 23-105 (141)
238 KOG1709 Guanidinoacetate methy 98.0 3.8E-05 8.2E-10 66.6 9.6 102 121-227 100-204 (271)
239 PF05971 Methyltransf_10: Prot 98.0 4E-05 8.7E-10 71.0 10.1 89 109-198 84-186 (299)
240 COG0500 SmtA SAM-dependent met 98.0 0.0001 2.2E-09 61.0 11.4 98 126-229 52-155 (257)
241 TIGR01444 fkbM_fam methyltrans 97.9 2.9E-05 6.3E-10 64.5 7.3 57 125-182 1-59 (143)
242 PF09243 Rsm22: Mitochondrial 97.9 0.00013 2.8E-09 67.7 12.2 108 112-221 23-133 (274)
243 TIGR02987 met_A_Alw26 type II 97.9 4.6E-05 1E-09 77.4 9.8 76 122-198 31-121 (524)
244 KOG2198 tRNA cytosine-5-methyl 97.9 8.6E-05 1.9E-09 69.8 10.7 114 118-232 151-299 (375)
245 COG4262 Predicted spermidine s 97.9 7.5E-05 1.6E-09 69.7 9.8 115 121-235 288-413 (508)
246 TIGR03439 methyl_EasF probable 97.9 0.00029 6.3E-09 66.4 13.4 113 111-227 67-195 (319)
247 KOG1331 Predicted methyltransf 97.8 1E-05 2.2E-10 73.3 3.0 96 121-226 44-140 (293)
248 PF03059 NAS: Nicotianamine sy 97.8 0.00026 5.7E-09 65.0 11.7 103 123-227 121-228 (276)
249 COG1889 NOP1 Fibrillarin-like 97.8 0.00025 5.4E-09 61.2 10.2 101 118-226 72-177 (231)
250 PHA01634 hypothetical protein 97.7 0.00015 3.2E-09 57.7 7.6 74 120-197 26-100 (156)
251 KOG2352 Predicted spermine/spe 97.7 0.00016 3.5E-09 70.4 9.4 103 122-226 47-158 (482)
252 KOG4058 Uncharacterized conser 97.7 0.00016 3.4E-09 59.0 7.8 98 121-226 71-169 (199)
253 KOG4589 Cell division protein 97.7 0.00037 8.1E-09 59.3 10.3 96 119-226 66-181 (232)
254 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 9.7E-05 2.1E-09 67.2 7.0 108 119-226 53-196 (256)
255 PF06962 rRNA_methylase: Putat 97.6 0.00028 6.1E-09 57.9 8.1 79 147-226 1-89 (140)
256 COG2384 Predicted SAM-dependen 97.6 0.00096 2.1E-08 58.5 11.6 94 122-220 16-111 (226)
257 KOG3178 Hydroxyindole-O-methyl 97.6 0.00022 4.8E-09 66.7 7.7 94 124-227 179-273 (342)
258 PF11968 DUF3321: Putative met 97.5 0.00033 7.1E-09 61.5 7.4 84 124-224 53-139 (219)
259 TIGR00006 S-adenosyl-methyltra 97.5 0.00063 1.4E-08 63.5 9.8 82 114-197 12-100 (305)
260 KOG3201 Uncharacterized conser 97.5 5.4E-05 1.2E-09 62.7 2.2 110 114-226 21-137 (201)
261 PF04672 Methyltransf_19: S-ad 97.5 0.00062 1.3E-08 62.0 9.1 121 107-229 52-190 (267)
262 KOG2671 Putative RNA methylase 97.5 0.00016 3.5E-09 67.0 5.1 84 118-203 204-297 (421)
263 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00071 1.5E-08 65.4 9.5 99 122-227 49-152 (377)
264 KOG2798 Putative trehalase [Ca 97.4 0.00097 2.1E-08 61.3 9.2 100 123-226 151-293 (369)
265 PF01861 DUF43: Protein of unk 97.4 0.0038 8.3E-08 55.8 12.7 99 118-223 40-142 (243)
266 PF04445 SAM_MT: Putative SAM- 97.4 0.00069 1.5E-08 60.6 8.0 85 114-199 65-161 (234)
267 KOG3987 Uncharacterized conser 97.3 6E-05 1.3E-09 65.0 0.3 93 121-227 111-205 (288)
268 KOG1099 SAM-dependent methyltr 97.3 0.00036 7.7E-09 61.2 4.5 92 124-226 43-160 (294)
269 KOG1227 Putative methyltransfe 97.2 0.00013 2.8E-09 66.5 1.4 98 121-226 193-293 (351)
270 KOG3115 Methyltransferase-like 97.2 0.00094 2E-08 57.6 6.2 104 122-226 60-180 (249)
271 PF04989 CmcI: Cephalosporin h 97.1 0.0035 7.6E-08 55.0 9.2 115 104-228 18-146 (206)
272 PF07091 FmrO: Ribosomal RNA m 97.0 0.0038 8.2E-08 56.2 9.0 84 107-195 92-177 (251)
273 COG5459 Predicted rRNA methyla 96.9 0.0027 5.8E-08 59.3 7.1 111 114-227 105-223 (484)
274 cd00315 Cyt_C5_DNA_methylase C 96.8 0.0019 4.1E-08 60.0 5.2 71 125-202 2-75 (275)
275 PF03141 Methyltransf_29: Puta 96.7 0.0026 5.5E-08 62.5 5.5 99 123-228 366-466 (506)
276 KOG0024 Sorbitol dehydrogenase 96.7 0.006 1.3E-07 56.6 7.6 95 118-226 165-270 (354)
277 COG1064 AdhP Zn-dependent alco 96.7 0.011 2.4E-07 56.0 9.2 91 118-226 162-256 (339)
278 KOG1596 Fibrillarin and relate 96.6 0.0064 1.4E-07 53.9 6.7 100 117-228 151-260 (317)
279 COG1063 Tdh Threonine dehydrog 96.6 0.0033 7.1E-08 60.6 5.4 94 120-226 166-266 (350)
280 PF11599 AviRa: RRNA methyltra 96.6 0.038 8.3E-07 48.4 11.1 116 108-226 38-211 (246)
281 COG0286 HsdM Type I restrictio 96.5 0.019 4.2E-07 57.7 10.5 114 111-224 175-321 (489)
282 PRK09424 pntA NAD(P) transhydr 96.2 0.025 5.4E-07 56.8 9.3 96 120-227 162-283 (509)
283 KOG2793 Putative N2,N2-dimethy 96.1 0.029 6.2E-07 50.8 8.4 102 122-226 86-196 (248)
284 COG4798 Predicted methyltransf 96.1 0.014 2.9E-07 50.3 5.5 112 116-229 42-166 (238)
285 PF01795 Methyltransf_5: MraW 96.0 0.014 3E-07 54.6 6.1 82 114-197 12-101 (310)
286 PF00145 DNA_methylase: C-5 cy 96.0 0.022 4.9E-07 53.9 7.8 92 125-226 2-108 (335)
287 COG0275 Predicted S-adenosylme 96.0 0.05 1.1E-06 50.2 9.5 82 114-197 15-104 (314)
288 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.018 3.9E-07 54.5 6.7 97 123-227 53-152 (380)
289 KOG2920 Predicted methyltransf 96.0 0.0065 1.4E-07 55.5 3.4 105 120-227 114-232 (282)
290 KOG1253 tRNA methyltransferase 95.9 0.0028 6.1E-08 61.8 1.1 101 121-228 108-215 (525)
291 KOG1562 Spermidine synthase [A 95.8 0.037 8E-07 50.8 7.4 107 121-227 120-234 (337)
292 PRK09880 L-idonate 5-dehydroge 95.7 0.044 9.6E-07 52.4 8.5 95 119-226 166-263 (343)
293 COG3129 Predicted SAM-dependen 95.5 0.035 7.5E-07 49.2 5.9 76 122-198 78-162 (292)
294 cd08283 FDH_like_1 Glutathione 95.5 0.099 2.1E-06 51.0 10.0 104 118-226 180-303 (386)
295 COG1568 Predicted methyltransf 95.1 0.089 1.9E-06 47.9 7.4 96 120-222 150-250 (354)
296 COG2933 Predicted SAM-dependen 95.0 0.073 1.6E-06 48.0 6.5 89 119-222 208-296 (358)
297 PRK11524 putative methyltransf 94.9 0.085 1.8E-06 49.2 7.1 46 120-166 206-252 (284)
298 KOG3924 Putative protein methy 94.7 0.15 3.3E-06 48.8 8.1 109 114-226 184-305 (419)
299 PF01555 N6_N4_Mtase: DNA meth 94.6 0.077 1.7E-06 47.2 6.0 42 120-162 189-231 (231)
300 PF05711 TylF: Macrocin-O-meth 94.6 0.32 6.9E-06 44.3 9.8 125 103-232 55-215 (248)
301 cd00401 AdoHcyase S-adenosyl-L 94.5 0.24 5.1E-06 48.6 9.5 86 120-227 199-287 (413)
302 TIGR00675 dcm DNA-methyltransf 94.4 0.053 1.2E-06 51.4 4.5 71 126-203 1-73 (315)
303 TIGR00561 pntA NAD(P) transhyd 94.3 0.12 2.6E-06 51.9 6.9 94 121-226 162-281 (511)
304 PRK13699 putative methylase; P 94.2 0.19 4.1E-06 45.3 7.5 46 121-167 162-208 (227)
305 KOG2078 tRNA modification enzy 94.2 0.024 5.1E-07 54.5 1.6 64 119-183 246-311 (495)
306 PRK13699 putative methylase; P 93.8 0.066 1.4E-06 48.2 3.8 53 173-226 2-69 (227)
307 PRK11524 putative methyltransf 93.8 0.077 1.7E-06 49.5 4.4 55 172-227 8-78 (284)
308 PF07757 AdoMet_MTase: Predict 93.6 0.059 1.3E-06 41.9 2.7 33 122-155 58-90 (112)
309 cd08281 liver_ADH_like1 Zinc-d 93.6 0.18 4E-06 48.7 6.8 97 118-227 187-288 (371)
310 cd08237 ribitol-5-phosphate_DH 93.5 0.31 6.7E-06 46.6 8.1 89 120-226 161-253 (341)
311 TIGR00027 mthyl_TIGR00027 meth 93.4 1.3 2.7E-05 40.8 11.5 125 104-230 64-198 (260)
312 COG0686 Ald Alanine dehydrogen 93.4 0.23 5.1E-06 46.1 6.4 95 123-226 168-265 (371)
313 TIGR01202 bchC 2-desacetyl-2-h 93.2 0.25 5.5E-06 46.5 6.9 83 121-226 143-228 (308)
314 TIGR03451 mycoS_dep_FDH mycoth 93.2 0.7 1.5E-05 44.4 10.0 97 118-227 172-274 (358)
315 COG0270 Dcm Site-specific DNA 93.1 0.14 3E-06 48.9 4.9 74 124-203 4-81 (328)
316 TIGR03366 HpnZ_proposed putati 92.9 0.21 4.6E-06 46.3 5.7 93 120-226 118-215 (280)
317 PF03492 Methyltransf_7: SAM d 92.8 1.7 3.7E-05 41.5 11.8 105 121-226 15-180 (334)
318 PF07279 DUF1442: Protein of u 92.7 1.3 2.9E-05 39.1 9.9 107 109-226 31-145 (218)
319 PRK10458 DNA cytosine methylas 92.6 0.59 1.3E-05 46.6 8.7 78 123-203 88-183 (467)
320 KOG2360 Proliferation-associat 92.4 0.39 8.3E-06 45.9 6.6 82 118-200 209-295 (413)
321 PLN02668 indole-3-acetate carb 92.3 1.1 2.4E-05 43.5 9.8 20 208-227 216-235 (386)
322 cd08230 glucose_DH Glucose deh 92.3 0.47 1E-05 45.5 7.5 91 120-226 170-266 (355)
323 KOG0821 Predicted ribosomal RN 92.1 0.35 7.5E-06 42.6 5.5 72 111-184 39-111 (326)
324 KOG2651 rRNA adenine N-6-methy 92.1 0.57 1.2E-05 44.7 7.3 44 121-164 152-196 (476)
325 KOG2912 Predicted DNA methylas 92.0 0.41 8.9E-06 44.5 6.2 73 126-198 106-187 (419)
326 PLN02740 Alcohol dehydrogenase 92.0 0.91 2E-05 44.1 9.2 96 118-226 194-297 (381)
327 PF02737 3HCDH_N: 3-hydroxyacy 92.0 0.72 1.6E-05 39.9 7.6 98 125-232 1-117 (180)
328 PF02636 Methyltransf_28: Puta 91.5 0.8 1.7E-05 41.8 7.7 70 123-197 19-103 (252)
329 PRK10309 galactitol-1-phosphat 91.3 0.47 1E-05 45.3 6.3 98 118-227 156-258 (347)
330 cd08239 THR_DH_like L-threonin 91.3 0.44 9.6E-06 45.3 6.0 96 118-226 159-259 (339)
331 cd05188 MDR Medium chain reduc 91.1 0.61 1.3E-05 42.2 6.6 95 118-226 130-229 (271)
332 PRK01747 mnmC bifunctional tRN 91.1 0.72 1.6E-05 48.5 7.8 105 122-226 57-203 (662)
333 KOG0022 Alcohol dehydrogenase, 91.0 0.48 1E-05 44.2 5.6 46 118-163 188-236 (375)
334 PF00107 ADH_zinc_N: Zinc-bind 91.0 0.63 1.4E-05 37.4 5.9 80 132-228 1-88 (130)
335 TIGR02822 adh_fam_2 zinc-bindi 90.9 1.8 3.9E-05 41.1 9.8 88 118-226 161-251 (329)
336 COG1062 AdhC Zn-dependent alco 90.9 0.57 1.2E-05 44.2 6.0 48 116-163 179-229 (366)
337 PLN02827 Alcohol dehydrogenase 90.8 1.1 2.3E-05 43.6 8.3 96 118-226 189-292 (378)
338 cd08232 idonate-5-DH L-idonate 90.5 1.6 3.4E-05 41.4 9.0 89 122-226 165-259 (339)
339 cd08254 hydroxyacyl_CoA_DH 6-h 90.4 1.2 2.6E-05 41.9 8.2 97 117-227 160-261 (338)
340 PF10237 N6-adenineMlase: Prob 90.3 4.4 9.5E-05 34.4 10.4 104 109-228 14-122 (162)
341 COG4627 Uncharacterized protei 90.3 0.043 9.4E-07 45.5 -1.6 57 173-230 31-87 (185)
342 COG4301 Uncharacterized conser 89.7 8.9 0.00019 34.7 12.1 105 121-227 77-191 (321)
343 TIGR00936 ahcY adenosylhomocys 89.3 2.2 4.7E-05 41.8 8.9 84 120-226 192-279 (406)
344 PF10354 DUF2431: Domain of un 89.2 1.6 3.6E-05 37.1 7.1 100 128-227 2-123 (166)
345 PRK05476 S-adenosyl-L-homocyst 89.0 2.3 4.9E-05 42.0 8.9 83 121-226 210-296 (425)
346 PF04072 LCM: Leucine carboxyl 88.9 1.6 3.4E-05 37.8 7.0 110 105-215 60-182 (183)
347 PF05206 TRM13: Methyltransfer 88.8 1.6 3.4E-05 40.1 7.1 73 112-185 8-87 (259)
348 PLN02494 adenosylhomocysteinas 88.7 1.5 3.4E-05 43.5 7.4 94 111-226 241-338 (477)
349 TIGR02819 fdhA_non_GSH formald 88.0 0.68 1.5E-05 45.3 4.5 101 118-226 181-296 (393)
350 PF06859 Bin3: Bicoid-interact 87.9 0.24 5.3E-06 38.7 1.1 38 189-226 1-41 (110)
351 PLN03154 putative allyl alcoho 87.9 1.9 4.1E-05 41.3 7.5 95 118-226 154-255 (348)
352 TIGR02825 B4_12hDH leukotriene 87.6 4.2 9.2E-05 38.2 9.7 96 116-226 132-234 (325)
353 TIGR02356 adenyl_thiF thiazole 87.6 2.7 5.8E-05 37.0 7.7 75 122-196 20-118 (202)
354 PF03269 DUF268: Caenorhabditi 87.3 1.1 2.4E-05 37.7 4.6 95 123-227 2-109 (177)
355 TIGR03201 dearomat_had 6-hydro 87.2 2.7 6E-05 40.1 8.2 44 118-162 162-208 (349)
356 cd08285 NADP_ADH NADP(H)-depen 86.9 1.2 2.6E-05 42.6 5.5 96 118-226 162-263 (351)
357 PRK07066 3-hydroxybutyryl-CoA 86.9 4.4 9.5E-05 38.5 9.1 96 124-228 8-118 (321)
358 cd08238 sorbose_phosphate_red 86.8 4.2 9E-05 40.0 9.3 46 118-163 171-222 (410)
359 PLN02586 probable cinnamyl alc 86.6 2.9 6.3E-05 40.3 8.0 90 120-226 181-275 (360)
360 KOG2352 Predicted spermine/spe 86.4 0.67 1.4E-05 45.7 3.4 104 122-226 295-413 (482)
361 KOG1201 Hydroxysteroid 17-beta 86.3 3.1 6.8E-05 38.6 7.5 74 120-197 35-122 (300)
362 cd08278 benzyl_alcohol_DH Benz 86.1 0.97 2.1E-05 43.6 4.4 93 118-226 182-282 (365)
363 TIGR02354 thiF_fam2 thiamine b 86.0 7.2 0.00016 34.3 9.5 95 122-221 20-137 (200)
364 PRK09260 3-hydroxybutyryl-CoA 85.8 4.1 8.9E-05 37.9 8.4 99 124-231 2-119 (288)
365 PF02254 TrkA_N: TrkA-N domain 85.8 4.4 9.5E-05 31.7 7.4 82 131-226 4-93 (116)
366 PRK12475 thiamine/molybdopteri 85.7 2.2 4.7E-05 40.9 6.5 75 122-196 23-123 (338)
367 PRK06035 3-hydroxyacyl-CoA deh 85.6 6.7 0.00014 36.6 9.7 93 124-226 4-118 (291)
368 PRK05808 3-hydroxybutyryl-CoA 85.4 8.9 0.00019 35.5 10.4 97 125-231 5-120 (282)
369 PRK08293 3-hydroxybutyryl-CoA 85.4 5.6 0.00012 37.0 9.0 94 124-226 4-117 (287)
370 COG1255 Uncharacterized protei 85.3 8.1 0.00018 30.6 8.2 87 124-228 15-103 (129)
371 cd08294 leukotriene_B4_DH_like 85.3 3.8 8.3E-05 38.4 8.0 95 117-226 138-238 (329)
372 cd08295 double_bond_reductase_ 85.3 5.5 0.00012 37.7 9.1 96 117-226 146-248 (338)
373 PRK07819 3-hydroxybutyryl-CoA 85.2 9.5 0.00021 35.5 10.4 98 124-231 6-123 (286)
374 PRK08644 thiamine biosynthesis 84.9 5.2 0.00011 35.5 8.2 74 122-195 27-123 (212)
375 TIGR02437 FadB fatty oxidation 84.9 4.3 9.4E-05 43.0 8.8 101 124-234 314-433 (714)
376 cd08293 PTGR2 Prostaglandin re 84.9 4 8.6E-05 38.7 8.0 95 119-226 149-251 (345)
377 TIGR02441 fa_ox_alpha_mit fatt 84.8 3.6 7.7E-05 43.8 8.2 101 124-234 336-455 (737)
378 PRK11730 fadB multifunctional 84.7 5.1 0.00011 42.5 9.3 100 124-233 314-432 (715)
379 cd08231 MDR_TM0436_like Hypoth 84.7 8.4 0.00018 36.8 10.2 94 120-226 175-277 (361)
380 PRK05854 short chain dehydroge 84.4 6 0.00013 37.3 8.8 76 121-197 12-101 (313)
381 PRK07530 3-hydroxybutyryl-CoA 84.2 11 0.00023 35.2 10.4 99 124-232 5-122 (292)
382 PRK06701 short chain dehydroge 84.1 9.7 0.00021 35.4 10.0 74 121-197 44-132 (290)
383 COG0604 Qor NADPH:quinone redu 84.0 6.8 0.00015 37.3 9.0 95 117-226 137-238 (326)
384 PRK15001 SAM-dependent 23S rib 83.9 12 0.00027 36.3 10.8 92 125-226 47-139 (378)
385 cd05278 FDH_like Formaldehyde 83.8 1.9 4.2E-05 40.8 5.3 96 118-226 163-264 (347)
386 PRK05786 fabG 3-ketoacyl-(acyl 83.7 13 0.00027 33.0 10.3 71 122-197 4-89 (238)
387 TIGR00518 alaDH alanine dehydr 83.6 1.5 3.3E-05 42.6 4.4 96 122-226 166-264 (370)
388 cd08233 butanediol_DH_like (2R 83.6 1.8 4E-05 41.2 5.1 96 118-226 168-269 (351)
389 cd05285 sorbitol_DH Sorbitol d 83.4 5.2 0.00011 38.0 8.1 97 117-226 157-262 (343)
390 cd08234 threonine_DH_like L-th 83.3 10 0.00022 35.6 10.1 94 117-226 154-254 (334)
391 PRK11154 fadJ multifunctional 83.2 7.1 0.00015 41.4 9.6 100 124-233 310-429 (708)
392 PF03721 UDPG_MGDP_dh_N: UDP-g 83.2 7.3 0.00016 33.8 8.1 98 125-227 2-118 (185)
393 cd08265 Zn_ADH3 Alcohol dehydr 82.9 7.2 0.00016 37.8 9.0 96 118-226 199-304 (384)
394 COG1748 LYS9 Saccharopine dehy 82.6 3.9 8.4E-05 39.8 6.7 70 124-198 2-77 (389)
395 TIGR02818 adh_III_F_hyde S-(hy 82.4 3.5 7.7E-05 39.7 6.6 97 117-226 180-284 (368)
396 PF11899 DUF3419: Protein of u 82.3 4.3 9.3E-05 39.5 7.0 47 117-164 30-77 (380)
397 PF06460 NSP13: Coronavirus NS 82.2 13 0.00028 34.0 9.2 107 107-226 45-166 (299)
398 KOG1098 Putative SAM-dependent 81.9 1.9 4.1E-05 43.8 4.4 96 120-226 42-155 (780)
399 cd08255 2-desacetyl-2-hydroxye 81.9 9.4 0.0002 34.8 9.0 92 118-226 93-187 (277)
400 cd05279 Zn_ADH1 Liver alcohol 81.8 3.2 6.9E-05 40.0 6.0 95 117-226 178-282 (365)
401 cd00757 ThiF_MoeB_HesA_family 81.7 6.8 0.00015 35.1 7.7 75 122-196 20-118 (228)
402 PLN02514 cinnamyl-alcohol dehy 81.4 8.5 0.00018 36.9 8.8 92 120-226 178-272 (357)
403 cd08263 Zn_ADH10 Alcohol dehyd 81.4 14 0.00031 35.4 10.4 93 118-226 183-284 (367)
404 PRK08306 dipicolinate synthase 81.1 9.5 0.00021 35.7 8.7 86 121-226 150-238 (296)
405 COG3510 CmcI Cephalosporin hyd 81.1 16 0.00034 31.9 9.0 111 106-229 57-180 (237)
406 PRK07417 arogenate dehydrogena 80.9 7.1 0.00015 36.1 7.8 83 125-225 2-87 (279)
407 cd08240 6_hydroxyhexanoate_dh_ 80.7 12 0.00027 35.5 9.6 91 120-226 173-271 (350)
408 PF03686 UPF0146: Uncharacteri 80.6 4.2 9.1E-05 32.8 5.2 63 122-196 13-77 (127)
409 COG1565 Uncharacterized conser 80.2 5.4 0.00012 38.1 6.6 48 120-167 75-132 (370)
410 PRK06130 3-hydroxybutyryl-CoA 80.1 13 0.00028 34.9 9.4 97 124-229 5-115 (311)
411 cd01487 E1_ThiF_like E1_ThiF_l 80.0 12 0.00026 32.0 8.3 72 125-196 1-95 (174)
412 cd08242 MDR_like Medium chain 79.9 13 0.00028 34.7 9.3 89 118-226 151-242 (319)
413 PF05050 Methyltransf_21: Meth 79.8 4.8 0.0001 33.5 5.7 53 128-180 1-61 (167)
414 cd08296 CAD_like Cinnamyl alco 79.4 7.6 0.00016 36.7 7.6 94 119-226 160-256 (333)
415 TIGR00853 pts-lac PTS system, 79.2 8.8 0.00019 29.3 6.5 72 124-223 4-75 (95)
416 PRK07063 short chain dehydroge 78.8 11 0.00023 34.1 8.1 75 122-197 6-94 (260)
417 PLN02178 cinnamyl-alcohol dehy 78.7 8.6 0.00019 37.3 7.9 89 121-226 177-270 (375)
418 KOG2013 SMT3/SUMO-activating c 78.6 2.2 4.7E-05 42.1 3.5 74 122-195 11-109 (603)
419 PRK05708 2-dehydropantoate 2-r 77.9 6.6 0.00014 37.0 6.6 90 124-227 3-102 (305)
420 cd01065 NAD_bind_Shikimate_DH 77.9 14 0.0003 30.5 7.9 77 112-197 8-89 (155)
421 PLN02545 3-hydroxybutyryl-CoA 77.8 28 0.0006 32.4 10.8 99 124-232 5-122 (295)
422 PRK08762 molybdopterin biosynt 77.6 11 0.00023 36.7 8.1 75 122-196 134-232 (376)
423 PRK12549 shikimate 5-dehydroge 77.6 16 0.00035 34.0 9.0 72 121-196 125-199 (284)
424 PRK07688 thiamine/molybdopteri 77.4 6.3 0.00014 37.7 6.3 75 122-196 23-123 (339)
425 PLN02989 cinnamyl-alcohol dehy 77.3 24 0.00053 33.0 10.4 74 122-197 4-85 (325)
426 cd08236 sugar_DH NAD(P)-depend 77.3 5.6 0.00012 37.6 6.1 93 118-226 155-255 (343)
427 cd05564 PTS_IIB_chitobiose_lic 77.3 6.7 0.00014 30.0 5.3 66 129-221 4-69 (96)
428 cd08261 Zn_ADH7 Alcohol dehydr 77.2 4 8.6E-05 38.6 5.0 95 118-226 155-255 (337)
429 PRK08324 short chain dehydroge 77.1 17 0.00036 38.4 10.0 71 122-197 421-506 (681)
430 PRK07806 short chain dehydroge 76.7 39 0.00084 30.0 11.2 101 122-226 5-131 (248)
431 PRK05690 molybdopterin biosynt 76.4 14 0.0003 33.6 8.0 75 122-196 31-129 (245)
432 COG3315 O-Methyltransferase in 76.3 25 0.00054 33.0 9.8 122 104-228 75-208 (297)
433 PRK12548 shikimate 5-dehydroge 76.2 17 0.00036 33.9 8.8 87 110-197 113-207 (289)
434 PRK07502 cyclohexadienyl dehyd 76.2 11 0.00025 35.3 7.7 87 124-226 7-97 (307)
435 PRK05867 short chain dehydroge 76.2 12 0.00027 33.5 7.8 74 121-197 7-94 (253)
436 PRK06172 short chain dehydroge 76.1 13 0.00029 33.3 8.0 72 122-197 6-92 (253)
437 PF00106 adh_short: short chai 76.0 10 0.00023 31.4 6.8 72 124-197 1-88 (167)
438 KOG1205 Predicted dehydrogenas 75.9 13 0.00028 34.5 7.7 76 121-197 10-99 (282)
439 PRK15116 sulfur acceptor prote 75.7 22 0.00047 32.8 9.1 33 122-154 29-63 (268)
440 PRK10083 putative oxidoreducta 75.6 13 0.00028 35.1 8.0 96 118-226 156-256 (339)
441 cd01492 Aos1_SUMO Ubiquitin ac 75.4 9.2 0.0002 33.5 6.4 75 122-196 20-117 (197)
442 COG0863 DNA modification methy 75.4 11 0.00024 34.9 7.4 48 119-167 219-267 (302)
443 PRK07677 short chain dehydroge 75.4 14 0.0003 33.2 7.9 72 123-197 1-86 (252)
444 PRK06914 short chain dehydroge 75.4 14 0.0003 33.8 8.0 72 123-196 3-88 (280)
445 TIGR02440 FadJ fatty oxidation 75.4 16 0.00035 38.7 9.3 101 124-234 305-425 (699)
446 cd08286 FDH_like_ADH2 formalde 75.4 7.6 0.00016 36.8 6.4 95 118-226 162-263 (345)
447 TIGR02279 PaaC-3OHAcCoADH 3-hy 75.1 19 0.00041 36.5 9.3 100 123-232 5-123 (503)
448 KOG1209 1-Acyl dihydroxyaceton 74.9 12 0.00027 33.1 6.8 67 122-197 6-89 (289)
449 cd08300 alcohol_DH_class_III c 74.7 8.6 0.00019 37.0 6.6 96 118-226 182-285 (368)
450 PRK06124 gluconate 5-dehydroge 74.6 15 0.00033 32.9 7.9 73 121-197 9-96 (256)
451 cd00755 YgdL_like Family of ac 74.4 21 0.00046 32.1 8.5 33 122-154 10-44 (231)
452 cd05281 TDH Threonine dehydrog 74.3 8.6 0.00019 36.4 6.5 93 120-226 161-259 (341)
453 PRK08339 short chain dehydroge 74.0 16 0.00036 33.2 8.0 75 121-197 6-93 (263)
454 cd08279 Zn_ADH_class_III Class 73.6 7.6 0.00016 37.2 5.9 93 118-226 178-279 (363)
455 COG0287 TyrA Prephenate dehydr 73.6 16 0.00035 33.9 7.8 88 124-226 4-95 (279)
456 cd08301 alcohol_DH_plants Plan 73.5 8.9 0.00019 36.9 6.4 96 118-226 183-286 (369)
457 PLN03209 translocon at the inn 73.3 12 0.00025 38.5 7.3 77 118-196 75-166 (576)
458 PRK08223 hypothetical protein; 73.3 9.4 0.0002 35.6 6.1 74 122-195 26-123 (287)
459 PRK07890 short chain dehydroge 72.7 20 0.00044 32.1 8.3 73 122-197 4-90 (258)
460 PF01488 Shikimate_DH: Shikima 72.6 6.3 0.00014 32.1 4.4 72 120-197 9-83 (135)
461 PRK07062 short chain dehydroge 72.5 19 0.00041 32.6 8.0 76 121-197 6-95 (265)
462 cd08277 liver_alcohol_DH_like 72.4 9.9 0.00021 36.5 6.4 96 118-226 180-283 (365)
463 PRK05597 molybdopterin biosynt 72.3 24 0.00052 34.0 9.0 74 122-196 27-125 (355)
464 PRK08945 putative oxoacyl-(acy 72.2 16 0.00034 32.7 7.4 75 120-197 9-100 (247)
465 PTZ00075 Adenosylhomocysteinas 72.1 8.9 0.00019 38.3 6.0 84 120-226 251-338 (476)
466 PRK08268 3-hydroxy-acyl-CoA de 72.0 23 0.0005 36.0 9.1 99 123-231 7-124 (507)
467 PRK05600 thiamine biosynthesis 71.6 19 0.00042 34.9 8.1 75 122-196 40-138 (370)
468 TIGR02355 moeB molybdopterin s 71.5 19 0.00041 32.6 7.6 34 122-155 23-58 (240)
469 PRK06128 oxidoreductase; Provi 71.5 46 0.001 30.8 10.6 73 121-197 53-142 (300)
470 PRK12937 short chain dehydroge 71.5 48 0.001 29.3 10.4 73 121-197 3-91 (245)
471 PRK07035 short chain dehydroge 71.5 20 0.00044 32.0 7.9 74 121-197 6-93 (252)
472 cd05284 arabinose_DH_like D-ar 71.4 11 0.00023 35.7 6.3 92 119-226 164-263 (340)
473 PRK05876 short chain dehydroge 71.3 20 0.00043 32.9 7.9 74 121-197 4-91 (275)
474 PRK05225 ketol-acid reductoiso 71.2 5.3 0.00011 39.6 4.1 90 121-230 34-132 (487)
475 PRK06249 2-dehydropantoate 2-r 71.2 15 0.00032 34.6 7.2 91 123-227 5-104 (313)
476 PF01210 NAD_Gly3P_dh_N: NAD-d 71.2 8.8 0.00019 32.2 5.1 93 125-228 1-102 (157)
477 PRK09590 celB cellobiose phosp 71.2 19 0.00041 28.0 6.5 72 125-224 3-76 (104)
478 PRK07904 short chain dehydroge 71.0 19 0.00042 32.5 7.7 74 121-196 6-94 (253)
479 PF03514 GRAS: GRAS domain fam 70.8 51 0.0011 32.0 10.9 109 114-226 102-241 (374)
480 cd01488 Uba3_RUB Ubiquitin act 70.2 15 0.00033 34.3 6.8 72 125-196 1-95 (291)
481 PRK08328 hypothetical protein; 70.2 14 0.0003 33.3 6.4 33 122-154 26-60 (231)
482 cd08245 CAD Cinnamyl alcohol d 70.1 52 0.0011 30.7 10.7 93 118-227 158-254 (330)
483 TIGR00497 hsdM type I restrict 70.0 18 0.00038 36.7 7.8 77 122-198 217-302 (501)
484 PRK08862 short chain dehydroge 69.9 21 0.00045 31.8 7.5 73 122-197 4-91 (227)
485 COG5379 BtaA S-adenosylmethion 69.8 11 0.00023 35.1 5.4 47 119-166 60-107 (414)
486 PRK09291 short chain dehydroge 69.7 24 0.00052 31.6 8.0 70 123-196 2-80 (257)
487 PRK07478 short chain dehydroge 69.4 24 0.00053 31.6 8.0 73 122-197 5-91 (254)
488 PRK07097 gluconate 5-dehydroge 69.2 23 0.0005 32.0 7.9 74 121-197 8-95 (265)
489 cd01483 E1_enzyme_family Super 69.0 38 0.00082 27.6 8.4 72 125-196 1-96 (143)
490 PRK09242 tropinone reductase; 68.9 26 0.00056 31.5 8.1 75 122-197 8-96 (257)
491 PRK08217 fabG 3-ketoacyl-(acyl 68.9 24 0.00053 31.3 7.9 72 122-197 4-90 (253)
492 TIGR00692 tdh L-threonine 3-de 68.8 10 0.00022 35.9 5.5 94 120-226 159-258 (340)
493 PRK06522 2-dehydropantoate 2-r 68.8 35 0.00076 31.6 9.1 91 125-227 2-98 (304)
494 TIGR03693 ocin_ThiF_like putat 68.5 21 0.00045 36.8 7.8 73 122-196 128-211 (637)
495 PRK06113 7-alpha-hydroxysteroi 68.1 26 0.00056 31.5 7.9 72 122-197 10-96 (255)
496 PRK09072 short chain dehydroge 68.0 24 0.00052 31.9 7.7 72 122-197 4-88 (263)
497 PRK05396 tdh L-threonine 3-deh 67.9 10 0.00022 35.9 5.3 93 121-226 162-260 (341)
498 cd08287 FDH_like_ADH3 formalde 67.9 10 0.00022 35.9 5.3 96 118-226 164-265 (345)
499 PRK08213 gluconate 5-dehydroge 67.7 27 0.00058 31.4 7.9 73 121-197 10-97 (259)
500 PRK05866 short chain dehydroge 67.6 26 0.00056 32.6 7.9 72 122-197 39-125 (293)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-58 Score=417.68 Aligned_cols=301 Identities=64% Similarity=1.062 Sum_probs=288.3
Q ss_pred CCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHH
Q 016992 79 DDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMAN 158 (379)
Q Consensus 79 ~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~ 158 (379)
......+.||+.|++++.|..||+|..|+.+|+.++.++....++++|||+|||||.+++++|++|+++|+|||.|.+++
T Consensus 17 ~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~ 96 (346)
T KOG1499|consen 17 KDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIAD 96 (346)
T ss_pred cccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHH
Confidence 34446689999999999999999999999999999999999999999999999999999999999999999999999779
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEee
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (379)
.|++.+..|++.+.|+++++.++++.+|.+++|+|+++||||+|.++.++..+|.+..++|+|||.++|+.+++++++++
T Consensus 97 ~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~ 176 (346)
T KOG1499|consen 97 FARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIE 176 (346)
T ss_pred HHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEecc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCceEe----------------
Q 016992 239 DAEYKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDASFT---------------- 302 (379)
Q Consensus 239 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~f~---------------- 302 (379)
...+...+..+|.++|||||+.+......+|+.+.+++.+++++|+.+.++|+.++..+++.|+
T Consensus 177 d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~ 256 (346)
T KOG1499|consen 177 DDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAF 256 (346)
T ss_pred CchhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeeeeccceeeccceEEEEccCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999888765
Q ss_pred ----------cC--CcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcce-eee
Q 016992 303 ----------CH--KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQGR-HSA 369 (379)
Q Consensus 303 ----------~~--~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 369 (379)
|+ ..+.+||+|..+.|||+|+||+|++|+.|+.|+.|.+++++++++.++|++++.++|+.+++ ..+
T Consensus 257 v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~ 336 (346)
T KOG1499|consen 257 VAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLCS 336 (346)
T ss_pred EEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEEEecCCccccc
Confidence 44 67999999999999999999999999999999999999999999999999999999999999 677
Q ss_pred eeceEEeeeC
Q 016992 370 ISRIQYYKMR 379 (379)
Q Consensus 370 ~~~~~~~~~~ 379 (379)
++.++.|+|+
T Consensus 337 ~~~~~~y~~~ 346 (346)
T KOG1499|consen 337 FSESDSYPMR 346 (346)
T ss_pred cccccccccC
Confidence 9999999986
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=4.3e-37 Score=276.25 Aligned_cols=280 Identities=40% Similarity=0.667 Sum_probs=242.0
Q ss_pred CccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHH
Q 016992 81 KTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMA 160 (379)
Q Consensus 81 ~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a 160 (379)
......||..|+.+.....|+.|..|+..|.++|.++.....++.|||+|||+|+++++++++|+++|++||.|.|.+.|
T Consensus 136 esSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA 215 (517)
T KOG1500|consen 136 ESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYA 215 (517)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHH
Confidence 34446799999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecc
Q 016992 161 KQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (379)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (379)
++.++.|.+.++|.++.+.++++.+| +++|+||+++|++.|.++.+++..+.+. ++|||.|.++|....++++|+.++
T Consensus 216 ~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 216 RKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDE 293 (517)
T ss_pred HHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchH
Confidence 99999999999999999999999999 9999999999999999999999999887 999999999999999999999988
Q ss_pred ccccc---cccccc--ccccccchhhhhhh----ccCceEEeeCCCcccCCCeeeEeeeCCCCCCCCce-------Ee--
Q 016992 241 EYKDD---KIEFWN--NVYGFDMSCIKKQA----MMEPLVDTVDQNQIVTNCQLLKTMDISKMGPGDAS-------FT-- 302 (379)
Q Consensus 241 ~~~~~---~~~~w~--~~~g~~~~~~~~~~----~~~~~~~~~~~~~~ls~p~~l~~~df~~~~~~~~~-------f~-- 302 (379)
.++.+ +..||. ..||.|++.+.... +.+|.++.+++.-++..+ ....+||.....+++. |.
T Consensus 294 ~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s-v~h~~dF~~~kEedlh~i~iPlkF~~~ 372 (517)
T KOG1500|consen 294 QLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS-VFHVIDFLNMKEEDLHEIDIPLKFHAL 372 (517)
T ss_pred HHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc-hHhhhhhhhcccchheeecccceehhh
Confidence 77654 456785 48999998765433 678999999888776643 4566788877776652 22
Q ss_pred ----cC--------------CcEEEecCCCCCCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEc
Q 016992 303 ----CH--------------KLMGFSTGPKSRATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQ 364 (379)
Q Consensus 303 ----~~--------------~~~~lst~P~~~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (379)
+| -.++++|+|..|.+||-|....|..||.|.+|++|++++.+..++... ++|.+..+..
T Consensus 373 ~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~LiA~~~QS--Y~i~i~l~~~ 450 (517)
T KOG1500|consen 373 QCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLIANSRQS--YDITITLSAK 450 (517)
T ss_pred hhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEEEccccc--eeEEEEEEee
Confidence 22 246799999999999999999999999999999999999999888664 5555554443
Q ss_pred c
Q 016992 365 G 365 (379)
Q Consensus 365 ~ 365 (379)
.
T Consensus 451 ~ 451 (517)
T KOG1500|consen 451 M 451 (517)
T ss_pred e
Confidence 3
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=4.4e-35 Score=285.66 Aligned_cols=252 Identities=33% Similarity=0.481 Sum_probs=195.5
Q ss_pred hhHHhhcCHHHHHHHHHHHHhccCC----C----CCCEEEEEcCCCchHHHHHHHcC-----CCEEEEEecHH-HHHHHH
Q 016992 96 IHEEMLKDVVRTKSYQNVIYQNKFL----F----KDKVVLDVGAGTGILSLFCAKAG-----AAHVYAVECSQ-MANMAK 161 (379)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~----~----~~~~VLDlGcG~G~~~~~la~~g-----~~~v~~vD~s~-~~~~a~ 161 (379)
.+..+.+|..++..|.++|.+++.. . ++.+|||||||+|.++..+++++ +.+|+|||.|+ ++...+
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 3455778999999999998765321 1 35789999999999999988865 67999999999 888888
Q ss_pred HHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccc
Q 016992 162 QIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAE 241 (379)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 241 (379)
+.+..+++.++|+++++|++++.++ +++|+||||+||+++.+| ..+.+|.++.++|||||++||+.+++|++|+.++.
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 8889999999999999999999988 799999999999999887 55678999999999999999999999999999987
Q ss_pred ccccccccccccccccchhhhhhhccCceEEeeCCCcccCCC-eeeEeeeCCCCCC---CCc------eEe---------
Q 016992 242 YKDDKIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNC-QLLKTMDISKMGP---GDA------SFT--------- 302 (379)
Q Consensus 242 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p-~~l~~~df~~~~~---~~~------~f~--------- 302 (379)
++.+....|. ...+..|++..+.+...++.+ ..+++|++.+... .+. +|+
T Consensus 310 l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhG 378 (448)
T PF05185_consen 310 LYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHG 378 (448)
T ss_dssp HHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEE
T ss_pred HHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEE
Confidence 7665433322 334678888888888888888 8899988876552 222 232
Q ss_pred --------cCCcEEEecCCCC----CCCCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 016992 303 --------CHKLMGFSTGPKS----RATHWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 365 (379)
Q Consensus 303 --------~~~~~~lst~P~~----~~~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (379)
+.+++.|||+|.. +.+||+|++|||++|+.|++|++|+++++++.+. ..||++|.+++
T Consensus 379 fagwFd~~Ly~~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~-----~~vWYEW~v~s 448 (448)
T PF05185_consen 379 FAGWFDAVLYGDVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDD-----RKVWYEWSVES 448 (448)
T ss_dssp EEEEEEEEEECSEEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCS-----TCEEEEEEEEE
T ss_pred EEEEEEEEeeCCeeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCC-----CcEEEEEEEeC
Confidence 4578999999987 6799999999999999999999999999976553 33999999864
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.6e-21 Score=184.12 Aligned_cols=249 Identities=22% Similarity=0.313 Sum_probs=191.7
Q ss_pred HhhcCHHHHHHHHHHHHhccCCC-----C--CCEEEEEcCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHH
Q 016992 99 EMLKDVVRTKSYQNVIYQNKFLF-----K--DKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVE 165 (379)
Q Consensus 99 ~~l~d~~r~~~~~~~i~~~~~~~-----~--~~~VLDlGcG~G~~~~~la~~-----g~~~v~~vD~s~-~~~~a~~~~~ 165 (379)
.+-.|...+..|.++|.+++... . -.+|+-+|+|.|-+.....++ ..-++++||.++ ++-..+. ..
T Consensus 337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n 415 (649)
T KOG0822|consen 337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RN 415 (649)
T ss_pred hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hc
Confidence 35567778888888887654322 1 236899999999776655442 124899999999 7766654 44
Q ss_pred HcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeeccccccc
Q 016992 166 ANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDD 245 (379)
Q Consensus 166 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~ 245 (379)
...+.++|+++.+|++.+..+.++.|++|++++|++..+| .-+.+|+.+.++|||+|+.||+.++.|++|+.+..++++
T Consensus 416 ~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNE-LSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~ 494 (649)
T KOG0822|consen 416 FECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNE-LSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQE 494 (649)
T ss_pred hhhhcCeeEEEeccccccCCchhhccchHHHhhccccCcc-CCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHH
Confidence 4566689999999999998666899999999999988775 346899999999999999999999999999999877754
Q ss_pred ccccccccccccchhhhhhhccCceEEeeCCCcccCCCeeeEeeeCCCC-------CCCCceEe----------------
Q 016992 246 KIEFWNNVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKM-------GPGDASFT---------------- 302 (379)
Q Consensus 246 ~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~-------~~~~~~f~---------------- 302 (379)
.... .. ...++.+++..+.....|++|+.+++|..-+. ....++|+
T Consensus 495 v~a~-~~----------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~ 563 (649)
T KOG0822|consen 495 VKAT-ND----------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDA 563 (649)
T ss_pred HHhc-CC----------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhh
Confidence 3221 00 12467788888888888888888888754332 22233454
Q ss_pred -cCCcEEEecCCCCCC---CCeeeEEEEcCCceecCCCCEEEEEEEEeeCCCCCceEEEEEEEEEcc
Q 016992 303 -CHKLMGFSTGPKSRA---THWKQTVLYLEDVLTICEGEAISGSLTVAPNKKNPRDVDIMLKYSLQG 365 (379)
Q Consensus 303 -~~~~~~lst~P~~~~---~~W~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (379)
+..+|.||+.|.+.+ .+|++++|||++|+.|.+|++|+++++...+. ..||++|.++.
T Consensus 564 ~LYkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~-----~kVWYEW~v~~ 625 (649)
T KOG0822|consen 564 VLYKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDS-----TKVWYEWSVES 625 (649)
T ss_pred hhhheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCC-----ceeEEEEEeee
Confidence 567999999997653 69999999999999999999999999976533 44999999984
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.84 E-value=1.9e-20 Score=167.15 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=104.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
...|.+.+.......+|.+|||||||||.+++.+++ .|.++|+|+|+|+ |++.|+++....++.+ |+|+++|++++|
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP 114 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP 114 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC
Confidence 346677677666666899999999999999999999 5778999999999 9999999999988866 999999999999
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++++||+|. +.+++.+..+++++|+++.|+|||||+++
T Consensus 115 f~D~sFD~vt---~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 115 FPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCCCccCEEE---eeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 9999999999 46789999999999999999999999877
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.8e-20 Score=168.85 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=84.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL 185 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 185 (379)
.|++.+.+.....+|.+|||+|||||.++..+++. + ..+|+|+|+|+ |++.|++++...+.. +|+++++|++++++
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 44444555556678999999999999999999884 3 36999999999 999999999998875 79999999999999
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++++||+|++ .+++.+..++...++++.|+|||||+++
T Consensus 113 ~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 113 PDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp -TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred CCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 9999999996 4567777889999999999999999987
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.79 E-value=7.5e-20 Score=160.44 Aligned_cols=154 Identities=22% Similarity=0.267 Sum_probs=121.3
Q ss_pred ccCCCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCC
Q 016992 67 MCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAA 146 (379)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~ 146 (379)
+.+++..++++|+.++ ..||+...++..-+.+ +..|...+.+.+... ...+|.+|||+|||-|.++..+|+.|+
T Consensus 9 ~~~id~~e~~~F~~la--~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~~-~~l~g~~vLDvGCGgG~Lse~mAr~Ga- 82 (243)
T COG2227 9 TQNVDYKELDKFEALA--SRWWDPEGEFKPLHKI--NPLRLDYIREVARLR-FDLPGLRVLDVGCGGGILSEPLARLGA- 82 (243)
T ss_pred cccCCHHHHHHHHHHH--hhhcCCCCceeeeeee--ccchhhhhhhhhhcc-cCCCCCeEEEecCCccHhhHHHHHCCC-
Confidence 4567778888988888 7899888776533322 122222222222211 126899999999999999999999995
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 147 ~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
.|+|+|+++ +++.|+..+...|+. |.+.+..++++....++||+|+|- ..+.|.+++..+++++.+++||||.+
T Consensus 83 ~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cm---EVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 83 SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCM---EVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEh---hHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 999999999 999999999999974 889999999987666899999994 34677789999999999999999999
Q ss_pred EecCCc
Q 016992 226 LPDKAS 231 (379)
Q Consensus 226 ip~~~~ 231 (379)
+.++..
T Consensus 158 f~STin 163 (243)
T COG2227 158 FLSTIN 163 (243)
T ss_pred EEeccc
Confidence 977654
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.78 E-value=1.7e-18 Score=162.70 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=119.1
Q ss_pred cCCCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhcc-------CCCCCCEEEEEcCCCchHHHHH
Q 016992 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-------FLFKDKVVLDVGAGTGILSLFC 140 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~-------~~~~~~~VLDlGcG~G~~~~~l 140 (379)
..++..++.+++.++ +.||+....+.....| +..|...+.+.+.+.. ...++.+|||||||+|.++..+
T Consensus 74 ~s~~~~e~~~f~~~a--~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~L 149 (322)
T PLN02396 74 TSLNEDELAKFSAIA--DTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPL 149 (322)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHH
Confidence 356777888888887 5899988776654444 3344444444333221 1246779999999999999999
Q ss_pred HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcc
Q 016992 141 AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL 219 (379)
Q Consensus 141 a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L 219 (379)
++.|. +|+|||+++ +++.|++++...+...+|+++++|++++++++++||+|++.. .+.|..++..++.++.++|
T Consensus 150 a~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~---vLeHv~d~~~~L~~l~r~L 225 (322)
T PLN02396 150 ARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE---VIEHVANPAEFCKSLSALT 225 (322)
T ss_pred HHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh---HHHhcCCHHHHHHHHHHHc
Confidence 98765 999999999 999999887766655679999999999887668999999854 3555578889999999999
Q ss_pred cCCEEEEecC
Q 016992 220 VDDGIVLPDK 229 (379)
Q Consensus 220 kpgG~lip~~ 229 (379)
||||.++..+
T Consensus 226 kPGG~liist 235 (322)
T PLN02396 226 IPNGATVLST 235 (322)
T ss_pred CCCcEEEEEE
Confidence 9999998653
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=5.2e-18 Score=135.72 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eeccCCCCceeEEEEec-
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIELPVTKVDIIISEW- 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~Iv~~~- 197 (379)
|+.+|||||||+|.+++.+++ .+..+|+|+|+|+ +++.|++++...+..++|+++++|+ ...... ++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 578999999999999999999 4566999999999 9999999998888889999999999 444443 7899999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
....+........+++.+.+.|+|||+++..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23334434667889999999999999998653
No 10
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.76 E-value=3.5e-18 Score=159.39 Aligned_cols=228 Identities=24% Similarity=0.329 Sum_probs=169.8
Q ss_pred hHHhhcCHHHHHHHHHHHHhccCCCCC------CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC
Q 016992 97 HEEMLKDVVRTKSYQNVIYQNKFLFKD------KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF 169 (379)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~~------~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~ 169 (379)
+..|++|..|+.+|+..|.......+. ..|||||+|||.+++++++.|+..|+|+|.-. |++.|++....+|+
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 345999999999999999876543322 26999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccccccc
Q 016992 170 SNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIE 248 (379)
Q Consensus 170 ~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~ 248 (379)
+++|+++.....++... ..+.|+++.+.+..-+.+++.++.+-.+..++++||...+|.++++|++++++..+..
T Consensus 115 SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~---- 190 (636)
T KOG1501|consen 115 SDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN---- 190 (636)
T ss_pred ccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh----
Confidence 99999999988887654 3458999999888888999999999999999999999999999999999999875542
Q ss_pred cccccccccchhhhhhh---------ccCc------eEEee-CCCcccCCCeeeEeeeCCCCCCCC--ce----------
Q 016992 249 FWNNVYGFDMSCIKKQA---------MMEP------LVDTV-DQNQIVTNCQLLKTMDISKMGPGD--AS---------- 300 (379)
Q Consensus 249 ~w~~~~g~~~~~~~~~~---------~~~~------~~~~~-~~~~~ls~p~~l~~~df~~~~~~~--~~---------- 300 (379)
|.+.....-..-.... ...+ +.+.. ..-++|+++..++.+||..-.... ..
T Consensus 191 -~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~va~~S 269 (636)
T KOG1501|consen 191 -LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPPVAVHS 269 (636)
T ss_pred -hhccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCcccccc
Confidence 2222211111000000 0000 11111 133579999999999998422211 10
Q ss_pred ---------E----ecCCcEEEecCCCCCC---------CCeeeEEEEcCC
Q 016992 301 ---------F----TCHKLMGFSTGPKSRA---------THWKQTVLYLED 329 (379)
Q Consensus 301 ---------f----~~~~~~~lst~P~~~~---------~~W~q~~~~l~~ 329 (379)
| ...+.+.+..+|.+.. .||.|+++++++
T Consensus 270 g~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 270 GPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred cchhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 0 0335567777886532 599999999984
No 11
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.73 E-value=1.7e-17 Score=145.54 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=102.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC------CEEEEEecHH-HHHHHHHHHHHcCCCCc--EEEEEc
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA------AHVYAVECSQ-MANMAKQIVEANGFSNV--ITVLKG 178 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~------~~v~~vD~s~-~~~~a~~~~~~~~~~~~--i~~~~~ 178 (379)
.|.+.....+...++.+|||++||||.++..+.+. +. ++|+.+|+|+ |++.++++..+.++... +.++++
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 45555666677788999999999999999999883 44 7999999999 99999999988887655 999999
Q ss_pred ceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 179 KIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|++++++++.+||..+ +.+++.+..++++.+++.+|+|||||+|.
T Consensus 167 dAE~LpFdd~s~D~yT---iafGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYT---IAFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CcccCCCCCCcceeEE---EecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999 56889999999999999999999999887
No 12
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=7.6e-18 Score=148.68 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=112.1
Q ss_pred CCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhcc-CCCC------CCEEEEEcCCCchHHHHHHH
Q 016992 70 ADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK-FLFK------DKVVLDVGAGTGILSLFCAK 142 (379)
Q Consensus 70 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~-~~~~------~~~VLDlGcG~G~~~~~la~ 142 (379)
++..++.++..++ ..||+.-..+.....| +..|.....+-+.... ...| |++|||+|||+|+++..+|+
T Consensus 34 i~~~eV~~f~~la--~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLAr 109 (282)
T KOG1270|consen 34 IDVDEVKKFQALA--FTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLAR 109 (282)
T ss_pred ccHHHHHHHHHhc--ccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHh
Confidence 3445566666666 6788877766554444 4555555555555544 1233 47899999999999999999
Q ss_pred cCCCEEEEEecHH-HHHHHHHHHHHcCCCC-----cEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHH
Q 016992 143 AGAAHVYAVECSQ-MANMAKQIVEANGFSN-----VITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARD 216 (379)
Q Consensus 143 ~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~ 216 (379)
.|+ .|+|||+++ |++.|++........+ ++++.+.+++.+. ++||.|+|.- .+.|..+++.+++.+.
T Consensus 110 lga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse---vleHV~dp~~~l~~l~ 182 (282)
T KOG1270|consen 110 LGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE---VLEHVKDPQEFLNCLS 182 (282)
T ss_pred hCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH---HHHHHhCHHHHHHHHH
Confidence 986 999999999 9999999965544332 3778888888775 5699999853 3677789999999999
Q ss_pred hcccCCEEEEecC
Q 016992 217 KWLVDDGIVLPDK 229 (379)
Q Consensus 217 ~~LkpgG~lip~~ 229 (379)
++|||||.++.++
T Consensus 183 ~~lkP~G~lfitt 195 (282)
T KOG1270|consen 183 ALLKPNGRLFITT 195 (282)
T ss_pred HHhCCCCceEeee
Confidence 9999999998654
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=4.8e-16 Score=143.11 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=93.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHH--cCCCCcEEEEEcceeec
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEA--NGFSNVITVLKGKIEEI 183 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~--~~~~~~i~~~~~d~~~~ 183 (379)
.|.+.+.+.....++.+|||+|||+|.++..+++. + ..+|+|+|+|+ |++.|+++... .+...+++++++|++++
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l 139 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC
Confidence 34444444455678899999999999999998884 4 36999999999 99999877542 22224699999999999
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
++++++||+|++.. .+++..++..++.++.++|||||.++..
T Consensus 140 p~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 140 PFDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 99888999999754 3555578899999999999999998743
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.66 E-value=1.5e-15 Score=128.56 Aligned_cols=102 Identities=31% Similarity=0.384 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCCchHHHHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la-~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.++..++ +. +..+|+|+|+|+ |++.|+++++.++++ +++++++|+.+++ ++ ++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEE
Confidence 467899999999999999999 44 357999999999 999999999999996 7999999999977 55 79999999
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+. .+..+...+++.+.++|++||.++.
T Consensus 80 ~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 80 NGVL---HHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp ESTG---GGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCch---hhccCHHHHHHHHHHHcCCCcEEEE
Confidence 7653 4447788999999999999999984
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.66 E-value=7.3e-16 Score=118.94 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=79.3
Q ss_pred EEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCCh
Q 016992 127 LDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFE 205 (379)
Q Consensus 127 LDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~ 205 (379)
||+|||+|..+..+++.+..+|+++|+++ +++.++++.... ++.++++|++++++++++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 89999999999999998667999999999 999999987653 4669999999999999999999987654444
Q ss_pred hhHHHHHHHHHhcccCCEEEEe
Q 016992 206 NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 206 ~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7889999999999999999873
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.65 E-value=1.4e-15 Score=145.37 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||||||+|.++..+++....+|+|||+|+ |++.|++++...++.++++++++|+.++++++++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~- 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES- 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc-
Confidence 57889999999999999999985334999999999 9999999999998877899999999999888899999998543
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.|..+...++.++.++|||||.++..
T Consensus 196 --~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 196 --GEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred --hhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 344467789999999999999999853
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=1.9e-15 Score=131.52 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|..++.+++ .+..+|+++|.++ |++.|+++++.+++++ ++++++|+.++.. .++||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~~~~~ 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVTSRAV 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEEEccc
Confidence 4588999999999999999987 4567999999999 9999999999999865 9999999998876 579999998642
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..++.++..+.++|+|||.+++
T Consensus 122 -------~~~~~~l~~~~~~LkpGG~lv~ 143 (187)
T PRK00107 122 -------ASLSDLVELCLPLLKPGGRFLA 143 (187)
T ss_pred -------cCHHHHHHHHHHhcCCCeEEEE
Confidence 4567899999999999999984
No 18
>PTZ00357 methyltransferase; Provisional
Probab=99.65 E-value=5.4e-15 Score=145.01 Aligned_cols=262 Identities=19% Similarity=0.225 Sum_probs=170.8
Q ss_pred hHHhhcCHHHHHHHHHHHHhccCC------------------------------C---CCCEEEEEcCCCchHHHHHHH-
Q 016992 97 HEEMLKDVVRTKSYQNVIYQNKFL------------------------------F---KDKVVLDVGAGTGILSLFCAK- 142 (379)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~------------------------------~---~~~~VLDlGcG~G~~~~~la~- 142 (379)
++.+-.|...++.|.++|.+.+.. . ...+|+-+|+|.|-|...+.+
T Consensus 642 YEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrA 721 (1072)
T PTZ00357 642 YEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHA 721 (1072)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHH
Confidence 334567778888888888765410 0 013689999999977554433
Q ss_pred ---cCC-CEEEEEecHH-HHHHHHHHH-HHcCC-------CCcEEEEEcceeeccCCC-----------CceeEEEEecC
Q 016992 143 ---AGA-AHVYAVECSQ-MANMAKQIV-EANGF-------SNVITVLKGKIEEIELPV-----------TKVDIIISEWM 198 (379)
Q Consensus 143 ---~g~-~~v~~vD~s~-~~~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~-----------~~~D~Iv~~~~ 198 (379)
.|. -+|++||.++ .+.....+. ....| .++|+++..|+..+..+. +++|+||||++
T Consensus 722 ak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELL 801 (1072)
T PTZ00357 722 VSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELL 801 (1072)
T ss_pred HHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhh
Confidence 233 4899999996 544444332 22344 346999999999985431 37999999999
Q ss_pred ccccCChhhHHHHHHHHHhcccC----CE-------EEEecCCceEEEEeecccccccccccccccccccchh-----hh
Q 016992 199 GYFLLFENMLNTVLYARDKWLVD----DG-------IVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSC-----IK 262 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkp----gG-------~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-----~~ 262 (379)
|+|..+|- -+.+|+.+.+.||+ +| +.||+.++.|++|+.+..++...... ...|+-... ..
T Consensus 802 GSFGDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~c~~~h 878 (1072)
T PTZ00357 802 GSLGDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPGCHDHH 878 (1072)
T ss_pred cccccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCccccccc
Confidence 99887754 46888888888875 55 58999999999999998776542110 001111100 00
Q ss_pred hhhccCceEEeeCCCcccCCCeeeEeeeCCCCC-----------------------CCCceEe-----------------
Q 016992 263 KQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMG-----------------------PGDASFT----------------- 302 (379)
Q Consensus 263 ~~~~~~~~~~~~~~~~~ls~p~~l~~~df~~~~-----------------------~~~~~f~----------------- 302 (379)
...+..+++..+.....++.|..+++|..-+.. ...+.|+
T Consensus 879 aa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAv 958 (1072)
T PTZ00357 879 AALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAV 958 (1072)
T ss_pred hhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEE
Confidence 112345566666666667788888888764332 1122343
Q ss_pred cCCc-----EEEecCCCCCC---CCeeeEEEEcC---CceecCCCC---------EEEEEEEEeeCCCCCceEEEEEEEE
Q 016992 303 CHKL-----MGFSTGPKSRA---THWKQTVLYLE---DVLTICEGE---------AISGSLTVAPNKKNPRDVDIMLKYS 362 (379)
Q Consensus 303 ~~~~-----~~lst~P~~~~---~~W~q~~~~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~~~~~~~~~~~ 362 (379)
+.++ +.|||.|...+ -+|++.+|||+ ++..++.|+ .|.+.+....+-...| ||++|+
T Consensus 959 LYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r---VwYew~ 1035 (1072)
T PTZ00357 959 LYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR---VWYEWS 1035 (1072)
T ss_pred eecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccce---EEEEEE
Confidence 3455 77999997654 48999999998 676777776 5555555433324444 889998
Q ss_pred Ec
Q 016992 363 LQ 364 (379)
Q Consensus 363 ~~ 364 (379)
+.
T Consensus 1036 v~ 1037 (1072)
T PTZ00357 1036 VT 1037 (1072)
T ss_pred Ee
Confidence 64
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.65 E-value=2e-15 Score=136.72 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=97.3
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
...+.+.+.......++.+|||+|||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ ++++++++|+.++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 3445555666666778899999999999999999884 3 46999999999 99999999988887 5699999999998
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++++++||+|++.. .+.+..+...++.++.++|+|||.++.
T Consensus 109 ~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 109 PFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 87778999999754 344446778999999999999999874
No 20
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=2e-15 Score=148.20 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=105.7
Q ss_pred ccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHH
Q 016992 82 TSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MAN 158 (379)
Q Consensus 82 ~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~ 158 (379)
.....|..++...+....++ +.......+|.+|||+|||+|..+.++++. +.++|+|+|+++ +++
T Consensus 209 ~~~~~~~~G~~~~Qd~~s~~------------~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~ 276 (431)
T PRK14903 209 NDSRVIKDGLATVQGESSQI------------VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276 (431)
T ss_pred ccChHHHCCeEEEECHHHHH------------HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 33355666665544433332 222345678999999999999999999984 356999999999 999
Q ss_pred HHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCCh---h----------------hHHHHHHHHHhc
Q 016992 159 MAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFE---N----------------MLNTVLYARDKW 218 (379)
Q Consensus 159 ~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~---~----------------~~~~~l~~~~~~ 218 (379)
.+++++++.|+. +++++++|+..++ ...++||.|+++++++++... + ....+|.++.++
T Consensus 277 ~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 277 LVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred HHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999985 5999999998775 234789999999877654321 1 125678899999
Q ss_pred ccCCEEEEecCCce
Q 016992 219 LVDDGIVLPDKASL 232 (379)
Q Consensus 219 LkpgG~lip~~~~~ 232 (379)
|||||.+++++|++
T Consensus 356 LkpGG~LvYsTCs~ 369 (431)
T PRK14903 356 LEKGGILLYSTCTV 369 (431)
T ss_pred cCCCCEEEEEECCC
Confidence 99999999998885
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.63 E-value=4.1e-15 Score=131.26 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=88.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|..+..+++.|. +|+|+|+|+ |++.+++++...++. ++++++.|+.+++++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~I~~~~ 103 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFD-GEYDFILSTV 103 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcC-CCcCEEEEec
Confidence 345678999999999999999999865 999999999 999999999998884 589999999887765 6799999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+++ .......++.++.++|+|||.++
T Consensus 104 ~~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 104 VLMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred chhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 54433 34567899999999999999965
No 22
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.62 E-value=2.9e-15 Score=147.75 Aligned_cols=116 Identities=17% Similarity=0.085 Sum_probs=95.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCce
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~ 190 (379)
....+|.+|||+|||+|..+.++++. + .++|+|+|+++ +++.++++++++|+. +|+++++|+.++. ...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccC
Confidence 45678899999999999999999984 3 46999999999 999999999999995 5999999998775 234689
Q ss_pred eEEEEecCccccCC---hh---------h-------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYFLLF---EN---------M-------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~l~~---~~---------~-------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|.|++++++++... .+ . ...++.++.++|||||.+++++|+++-
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99999987765321 11 1 357899999999999999998888643
No 23
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.62 E-value=3.5e-15 Score=137.62 Aligned_cols=139 Identities=16% Similarity=0.028 Sum_probs=106.0
Q ss_pred cchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHH
Q 016992 83 SADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANM 159 (379)
Q Consensus 83 ~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~ 159 (379)
....|..++...+....|+ ....+...+|.+|||+|||+|..+..+++. + .+.|+++|+++ +++.
T Consensus 44 ~~~~~~~G~~~~qd~~s~~------------~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~ 111 (264)
T TIGR00446 44 STPEYLSGLYYIQEASSMI------------PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV 111 (264)
T ss_pred cChhHhCCeEEEECHHHHH------------HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 3345667776655444443 112245578899999999999999999884 2 36999999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC------------Chh-------hHHHHHHHHHhccc
Q 016992 160 AKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL------------FEN-------MLNTVLYARDKWLV 220 (379)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~------------~~~-------~~~~~l~~~~~~Lk 220 (379)
++++++++++. +|.+++.|+..+....++||+|++++++++.. ... ....+|....++||
T Consensus 112 ~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk 190 (264)
T TIGR00446 112 LIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK 190 (264)
T ss_pred HHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999985 59999999887654446799999998776541 111 12468899999999
Q ss_pred CCEEEEecCCceEE
Q 016992 221 DDGIVLPDKASLYL 234 (379)
Q Consensus 221 pgG~lip~~~~~~~ 234 (379)
|||++++++|++..
T Consensus 191 pgG~lvYstcs~~~ 204 (264)
T TIGR00446 191 PGGVLVYSTCSLEP 204 (264)
T ss_pred CCCEEEEEeCCCCh
Confidence 99999998888643
No 24
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.62 E-value=3.7e-15 Score=146.74 Aligned_cols=120 Identities=14% Similarity=0.014 Sum_probs=94.6
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCce
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKV 190 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~ 190 (379)
.......+|.+|||+|||+|..+.++++ .+.++|+|+|+++ +++.+++++++.|+...+.+..+|...... +.++|
T Consensus 231 ~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 231 ATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred HHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccccc
Confidence 3334567899999999999999999998 4556999999999 999999999999986445557777765543 34789
Q ss_pred eEEEEecCccccCC---hhh----------------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYFLLF---ENM----------------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|.|++++++++... .+. ...+|.++.++|||||.+++++|++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99999877665321 111 257889999999999999999888743
No 25
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.62 E-value=2.5e-15 Score=139.10 Aligned_cols=111 Identities=27% Similarity=0.375 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
..+....++|.+. ..+|++|||+|||||.+++.+++.|+++|+|+|+++ +++.|++|+..|++.+++.+. ...+
T Consensus 146 ~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 146 PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-
Confidence 4455666777654 568899999999999999999999999999999999 999999999999998877653 2222
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
...++||+|+++.+. ..+..++..+.++|+|||.+|.
T Consensus 221 -~~~~~~dlvvANI~~------~vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 221 -LVEGKFDLVVANILA------DVLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp -TCCS-EEEEEEES-H------HHHHHHHHHCHHHEEEEEEEEE
T ss_pred -cccccCCEEEECCCH------HHHHHHHHHHHHhhCCCCEEEE
Confidence 223899999999753 4456778888899999999993
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.61 E-value=6.7e-15 Score=129.68 Aligned_cols=103 Identities=19% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.+++++..+++. +.+...|+...+++ ++||+|++..
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~ 102 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTV 102 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEec
Confidence 344567999999999999999999875 999999999 999999999888874 78888888766665 6899999976
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+++ +......+++++.++|||||+++
T Consensus 103 ~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 53333 33567899999999999999865
No 27
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.61 E-value=1.4e-14 Score=125.51 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=86.5
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.++||||||.|..++.+|+.|. .|+|+|.|+ .++.+++.+...+++ |+..+.|+.+..++ +.||+|++.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st 101 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVST 101 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEE
Confidence 4445677999999999999999999998 999999999 999999999999885 99999999988886 789999997
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+..++. ....+.+++.+...++|||+++.
T Consensus 102 ~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 102 VVFMFLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEeccCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 6655554 46778999999999999999774
No 28
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.4e-15 Score=136.91 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 105 VRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
..+....+++.+. ..+|++|||+|||+|.+++.+++.|+++|+|+|+++ +++.|++|+..|++...++.-..+....
T Consensus 147 pTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3455556666644 358999999999999999999999999999999999 9999999999999864333333333333
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+. .++||+||++.+. ..+..+...+.+.|||||+++.
T Consensus 225 ~~-~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 225 PE-NGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred cc-cCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEE
Confidence 22 3699999998643 4456888889999999999993
No 29
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.60 E-value=7.8e-15 Score=144.42 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=92.8
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
....+|.+|||+|||+|..+..+++.+ ..+|+|+|+++ +++.++++++.+|+. ++++++|+.++. ++.++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 456789999999999999999999853 36999999999 999999999999874 789999998754 234689999
Q ss_pred EEecCccccC------------Chhh-------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 194 ISEWMGYFLL------------FENM-------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 194 v~~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
++++++++.. .... ...++..+.++|||||.+++++|+++.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 9988755321 1111 247888999999999999988887644
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=1.3e-14 Score=126.08 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.++.. +..+|+|+|.++ |++.++++++.+++. +++++++|+.++.. .++||+|+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~-~~~fD~I~s~~- 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH-EEQFDVITSRA- 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc-cCCccEEEehh-
Confidence 35889999999999999998875 456899999999 999999999999885 59999999998753 47999999864
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ ..+..++..+.++|+|||.++.
T Consensus 118 ---~---~~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 118 ---L---ASLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ---h---hCHHHHHHHHHHhcCCCCEEEE
Confidence 2 3456778888999999999984
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=6.3e-15 Score=135.47 Aligned_cols=103 Identities=26% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...++.++++++++|+.++. ..+++||+|++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4567999999999999999999864 999999999 99999999999988778999999998874 44578999998654
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+ +..++..++.++.++|||||.++.
T Consensus 122 l~---~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 LE---WVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HH---hhCCHHHHHHHHHHHcCCCeEEEE
Confidence 33 335677899999999999999873
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.59 E-value=1.3e-14 Score=133.80 Aligned_cols=113 Identities=21% Similarity=0.281 Sum_probs=87.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.+.+...+.+|.+|||||||.|.+++.+|+. |+ +|+||.+|+ ..+.|++.+++.|+.+++++...|..+++ .
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~ 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---G 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---C
Confidence 345666678899999999999999999999995 76 999999999 99999999999999999999999998765 4
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+||.|+|-.+..++ +....+.+++.+.++|||||.++.+
T Consensus 127 ~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 127 KFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999996553333 2357889999999999999999853
No 33
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1e-14 Score=132.66 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=97.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.+.+.+.+|++|||||||-|.+++.+|+.-..+|+|+++|+ +.+.+++++...|+.++|+++..|..++. ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~ 137 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EP 137 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cc
Confidence 455667788999999999999999999999995234999999999 99999999999999889999999999885 55
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
||-|||-.|..++. ....+.++..+.++|+|||.++..
T Consensus 138 fDrIvSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 138 FDRIVSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred cceeeehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEE
Confidence 99999965533332 245789999999999999999843
No 34
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.58 E-value=4.9e-14 Score=121.46 Aligned_cols=103 Identities=30% Similarity=0.356 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
++.+|||+|||+|.+++.+++.+. .+|+++|+++ +++.+++++..+++.+ ++++..|..+... .++||+|+++++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-DGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-TTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-ccceeEEEEccch
Confidence 678999999999999999999654 3799999999 9999999999999976 9999999876533 4899999999863
Q ss_pred cccC--ChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLL--FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~--~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... +...+..++....++|||||.++
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 2221 11246889999999999999986
No 35
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=2.4e-14 Score=135.53 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=89.2
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
.......+|++|||||||+|.++..+++.|+..|+|+|+|+ ++..++......+...+|.++.+|++++++ .++||+|
T Consensus 115 ~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 115 LPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTV 193 (322)
T ss_pred HHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEE
Confidence 33444567899999999999999999998888899999999 987665544433333569999999999987 5899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|..+ +.|..++..+++++.+.|+|||.++.+
T Consensus 194 ~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 194 FSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EECCh---hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98544 344567889999999999999999864
No 36
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=2e-14 Score=115.84 Aligned_cols=104 Identities=26% Similarity=0.413 Sum_probs=86.9
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~ 199 (379)
|.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++..+++.++++++++|+.+.. ++.++||+|+++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP- 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP- 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC-
Confidence 568999999999999999998767999999999 99999999999999888999999998886 56799999999975
Q ss_pred cccCC------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLF------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++-.. ......+++.+.++|+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 33211 12346889999999999999874
No 37
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=2.5e-14 Score=141.72 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=93.6
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....++.+|||+|||+|..+..+++. +.++|+|+|+++ +++.++++++++|+.+ |+++++|+.++. ++ ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhc-ccCCE
Confidence 44578899999999999999999984 357999999999 9999999999999954 999999998763 33 68999
Q ss_pred EEEecCccccCC------------hhh-------HHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 193 IISEWMGYFLLF------------ENM-------LNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 193 Iv~~~~~~~l~~------------~~~-------~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|++++++++... ... ...++..+.++|||||.+++++|+++.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 999987554311 011 146788999999999999988887644
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.56 E-value=3.8e-14 Score=132.86 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......+|++|||||||+|.++..++..|+..|+|+|+|+ |+..++......+...++.+..+++++++.. .+||+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~ 191 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDT 191 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCE
Confidence 444455678899999999999999999888888999999999 9877644333222235688999999888765 68999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|..+ +.|..++..++.++++.|||||.|+..
T Consensus 192 V~s~gv---L~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 192 VFSMGV---LYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred EEEcch---hhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 998654 344467789999999999999999864
No 39
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.55 E-value=2.5e-14 Score=130.79 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 357789999999999999888872 446999999999 9999999999888877899999999988764 5899998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
....+++. ......+++++.+.|||||.++...
T Consensus 132 ~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 65444443 3456789999999999999998543
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.55 E-value=1.2e-13 Score=112.18 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=85.6
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCceeE
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKVDI 192 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~ 192 (379)
......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++++...++. +++++.+|+... +...++||+
T Consensus 13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~ 91 (124)
T TIGR02469 13 SKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDR 91 (124)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCE
Confidence 3344566789999999999999999985 557999999999 999999999988875 589999987653 222368999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++... . .....+++.+.++|+|||.++..
T Consensus 92 v~~~~~---~---~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 92 VFIGGS---G---GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEECCc---c---hhHHHHHHHHHHHcCCCCEEEEE
Confidence 997532 1 34568999999999999999854
No 41
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=3.8e-14 Score=130.66 Aligned_cols=111 Identities=27% Similarity=0.294 Sum_probs=88.7
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.....+.++.+|||||||+|..+..+++....+|+|+|+++ |++.|+++... .+++.++++|+.+.++++++||+
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~ 120 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDM 120 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEE
Confidence 334456678899999999999999998874234999999999 99999987654 25699999999988887789999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++.....++ ...+...+++++.++|||||.++..
T Consensus 121 V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 121 IYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9984321221 1236789999999999999999853
No 42
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.55 E-value=1.7e-14 Score=113.21 Aligned_cols=96 Identities=23% Similarity=0.387 Sum_probs=77.9
Q ss_pred EEEEcCCCchHHHHHHHc---C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 126 VLDVGAGTGILSLFCAKA---G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~---g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
|||+|||+|..+..+++. + ..+++|+|+|+ |++.++++....+. ++++++.|+.+++...++||+|++.....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999985 3 26999999999 99999999988776 58999999999887678999999943212
Q ss_pred ccCChhhHHHHHHHHHhcccCCE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
.......+..+++.+.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 23556778999999999999998
No 43
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=6e-14 Score=130.29 Aligned_cols=106 Identities=24% Similarity=0.320 Sum_probs=90.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHH-cCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~-~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
.+.++.+|||+|||+|..++.+++ .+. .+|+++|+++ |++.|+++....++. +++++.+|++++++++++||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 456889999999999998887777 344 5899999999 999999999988884 699999999998887789999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+.+ +..+...+++++.++|||||+++..
T Consensus 153 ~~v~~---~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 153 NCVIN---LSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred cCccc---CCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 76433 3356778999999999999999854
No 44
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=3.3e-14 Score=121.72 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
+....-.++||+|||.|.++..+|.. ..+++++|+++ .++.|+++.... .+|++++.|+.+... .++||+||..
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P-~~~FDLIV~S 113 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP-EGRFDLIVLS 113 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC-CCCeeEEEEe
Confidence 34445568999999999999999997 35999999999 999999988753 469999999988754 4999999998
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecccccccccccccccccc
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGF 256 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 256 (379)
-++|++....++..++..+...|+|||.+|..+. .......|...+|-
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~------------rd~~c~~wgh~~ga 161 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA------------RDANCRRWGHAAGA 161 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHHTT-S--H
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe------------cCCcccccCcccch
Confidence 8899998777899999999999999999995321 22345568776664
No 45
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.54 E-value=1.1e-13 Score=129.32 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=84.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++.+++.+...+... ...++||+|+++.+
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecC
Confidence 357899999999999999999998888999999999 999999999999988778887776332 22478999999754
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. ..+..++..+.++|||||.++.
T Consensus 235 ~------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 235 A------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred H------HHHHHHHHHHHHHcCCCcEEEE
Confidence 2 3456788999999999999984
No 46
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.53 E-value=4.8e-14 Score=126.09 Aligned_cols=108 Identities=30% Similarity=0.367 Sum_probs=91.2
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~I 193 (379)
.......+|||+|||+|.+++++|+. ...+|+|||+.+ +++.|+++++.|++.++|+++++|+.++... ..+||+|
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 33445789999999999999999996 657999999999 9999999999999999999999999987532 3579999
Q ss_pred EEecCccccCChh----------------hHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFEN----------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~li 226 (379)
+|+++ |+-.+.. .++.+++...++|||||.+.
T Consensus 120 i~NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 120 ICNPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred EeCCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 99985 5443322 24788999999999999987
No 47
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=7.5e-14 Score=128.05 Aligned_cols=105 Identities=26% Similarity=0.272 Sum_probs=85.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.+ .+|+++|+|+ |++.|+++.. .+.++++|++.+++++++||+
T Consensus 34 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 34 LLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEE
Confidence 3333444467899999999999999998876 4999999999 9999987642 256889999998888789999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|++... +.+..++..++.++.++|+|||.+++.
T Consensus 107 V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 107 AWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 998653 334467889999999999999999854
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=9.3e-14 Score=129.87 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+ +++.+++++..+++ ++++...|+....++ ++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~-~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ-EEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc-CCccEEEEcchh
Confidence 3456999999999999999999875 999999999 99999999999887 488999998876664 889999998654
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++ .......++.++.++|+|||+++
T Consensus 195 ~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 195 MFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 444 33567899999999999999965
No 49
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=8.4e-14 Score=128.03 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=83.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++. +++++++|++++. +.++||
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CCCCce
Confidence 344455567899999999999999999885 345999999999 99999752 3789999998874 447999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++..+.++ ..+...++.++.+.|||||.++..
T Consensus 92 ~v~~~~~l~~---~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 92 VVVSNAALQW---VPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEEehhhhh---CCCHHHHHHHHHHhCCCCcEEEEE
Confidence 9999765333 357789999999999999999853
No 50
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=2.1e-13 Score=121.09 Aligned_cols=106 Identities=26% Similarity=0.304 Sum_probs=84.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.....++.+|||+|||+|..+..+++. + .++|+++|+++ +++.|++++..+++.++++++.+|+.+......+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~ 142 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP 142 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence 3444455678899999999999999998884 3 46999999999 9999999999999877799999999875444478
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|++... + ..+..++.+.|+|||+++.
T Consensus 143 fD~Ii~~~~---~------~~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 143 FDAIIVTAA---A------STIPSALVRQLKDGGVLVI 171 (205)
T ss_pred ccEEEEccC---c------chhhHHHHHhcCcCcEEEE
Confidence 999998643 1 1223467789999999874
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=2.3e-13 Score=136.32 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=88.4
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++.. +...+++++++|+...++++++||+|+|.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~I~s~ 339 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDVIYSR 339 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEEEEEC
Confidence 34567889999999999999999885334999999999 9999998765 34457999999999888777889999986
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+ +.+..+...++.++.++|||||.++..
T Consensus 340 ~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 340 DT---ILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred Cc---ccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 43 444467889999999999999999854
No 52
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=3.6e-13 Score=129.02 Aligned_cols=106 Identities=14% Similarity=0.075 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+.+|||+|||+|.+++.+++. +..+|+++|.|+ +++.|+++++.++.. .+++++..|+.... +..+||+|+|+
T Consensus 227 ~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlIlsN 305 (378)
T PRK15001 227 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAVLCN 305 (378)
T ss_pred ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEEEEC
Confidence 34569999999999999999985 457999999999 999999999988753 36899998886542 33689999999
Q ss_pred cCccccC--ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.+... .......++....+.|+|||.++.
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 7533221 123456888999999999999873
No 53
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=2.6e-13 Score=123.53 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|++++...+...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 47789999999999999998874 356999999999 9999999998876656799999999988764 58999886
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
...+++ .......+++++.+.|+|||.++...
T Consensus 130 ~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhC-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 543333 23456789999999999999998653
No 54
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=2.1e-13 Score=125.58 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=85.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.......++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++ .++.++.+|+..+..+ .+||
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~-~~fD 95 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPP-QALD 95 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCC-CCcc
Confidence 444455677889999999999999999884 457999999999 999998764 3488999999877543 7999
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|++..+.+ +..+...++..+.+.|||||.++..
T Consensus 96 ~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999875433 3356788999999999999998854
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.49 E-value=1.9e-13 Score=121.10 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eecc--CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D~Iv~~ 196 (379)
++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|++++..+++ .+++++++|+ ..++ ++.++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 6679999999999999999884 456899999999 99999999999888 4699999999 7665 556789999986
Q ss_pred cCccccC--Ch---hhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--FE---NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lip 227 (379)
....... +. .....+++++.++|||||.++.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 4321111 00 1246789999999999999984
No 56
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.49 E-value=2.6e-14 Score=119.72 Aligned_cols=137 Identities=26% Similarity=0.383 Sum_probs=118.2
Q ss_pred hhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 016992 95 GIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (379)
Q Consensus 95 ~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (379)
.||-.+|.|..|...|..+|..... ..+.|+|+|+|.+++.+|+. +.+|++||.++ ..+.|.+++.-+|+ +++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cce
Confidence 5778899999999999999987533 68999999999999999998 78999999999 99999999988888 679
Q ss_pred EEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEeecc
Q 016992 174 TVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIEDA 240 (379)
Q Consensus 174 ~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 240 (379)
+++.+|+.+..+ +..|+|+|++++..|..+... .+++.+..+|+.++.+||+....-+.++...
T Consensus 83 evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qV-pV~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 83 EVVVGDARDYDF--ENADVVICEMLDTALIEEKQV-PVINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred EEEecccccccc--cccceeHHHHhhHHhhccccc-HHHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 999999999987 678999999888777766554 5667777899999999999887777766543
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.49 E-value=1.4e-13 Score=124.10 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=86.5
Q ss_pred CEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
++|||||||+|.++..+++. +..+|+|+|+|+ +++.|++++...|+.++++++..|+...+++ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~--- 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV--- 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH---
Confidence 47999999999999999884 446999999999 9999999999999988999999999776655 68999997544
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..+...+++++.++|||||.++..
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 333366789999999999999999854
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.49 E-value=1.4e-13 Score=124.75 Aligned_cols=147 Identities=23% Similarity=0.220 Sum_probs=109.0
Q ss_pred cCCCcccCCCCCCCccchhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCE
Q 016992 68 CDADVSMIDGEDDKTSADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAH 147 (379)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~ 147 (379)
.++.++++.+++.++ +.||+.+...+.+..+-. ...+.+.......++.+|||||||+|.++..+++.+. +
T Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~ 72 (233)
T PRK05134 2 SNVDPAEIAKFSALA--ARWWDPNGEFKPLHRINP------LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-D 72 (233)
T ss_pred CcccHHHHHHHHHHH--HHHhccCCCcHHHHHhhH------HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-e
Confidence 345555666666666 678888876554443321 2223344434456788999999999999999988764 8
Q ss_pred EEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 148 VYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 148 v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
|+++|+++ +++.+++++...+. .+.++..++.+++ ...++||+|++..+ +.+......++..+.++|+|||.+
T Consensus 73 v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l 147 (233)
T PRK05134 73 VTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLV 147 (233)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEE
Confidence 99999999 99999999887765 4788888887764 23478999997543 444467788999999999999998
Q ss_pred Eec
Q 016992 226 LPD 228 (379)
Q Consensus 226 ip~ 228 (379)
+..
T Consensus 148 ~v~ 150 (233)
T PRK05134 148 FFS 150 (233)
T ss_pred EEE
Confidence 854
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.49 E-value=6.6e-13 Score=116.28 Aligned_cols=101 Identities=27% Similarity=0.276 Sum_probs=83.2
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
....++.+|||+|||+|.+++.+++. +..+|+++|+++ +++.|++++..+++. +++++++|+.. .++ ++||+|++
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~-~~~D~v~~ 103 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP-GKADAIFI 103 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC-cCCCEEEE
Confidence 44568889999999999999999985 446999999999 999999999998874 59999998753 333 68999997
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
... . ..+..++..+.++|+|||+++.
T Consensus 104 ~~~---~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS---G---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC---c---cCHHHHHHHHHHhcCCCeEEEE
Confidence 532 1 2356788899999999999984
No 60
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=4.2e-13 Score=118.58 Aligned_cols=107 Identities=27% Similarity=0.349 Sum_probs=87.7
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCcee
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVD 191 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D 191 (379)
......++.+|||+|||+|.+++.+++. + ..+|+++|+++ +++.|++++..+++.+++.++++|+.+.. ...++||
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 3456778999999999999999999874 3 46999999999 99999999999987677999999987642 2236899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.|++.. +...+..++..+.+.|+|||+++..
T Consensus 114 ~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 114 RIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999742 1145678899999999999999843
No 61
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=3.2e-13 Score=125.75 Aligned_cols=106 Identities=26% Similarity=0.419 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..+++.++++++++|+.+. ++.++||+|+++++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCC
Confidence 34579999999999999999985 446999999999 9999999999999877899999998653 34468999999864
Q ss_pred ccccC-----------Ch------------hhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLL-----------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|.-. ++ .....++..+.++|+|||+++..
T Consensus 199 -y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 -YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred -CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3211 11 12467788889999999999843
No 62
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.48 E-value=2.1e-13 Score=128.81 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||||||+|.++..+++ .+..+|+++|.|+ |++.|+++... .+++++.+|++++++++++||+|++..+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 4678999999999999998887 4556999999999 99999987642 3588999999998887789999998543
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+..+...+++++.++|||||.++.
T Consensus 188 ---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 188 ---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 33345677899999999999999873
No 63
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.48 E-value=6.5e-13 Score=112.89 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=90.9
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
....+.+.+|.+++|||||||.+++.++.. +..+|||+|.++ +++..++|.++.|+ ++++++.+++.+.-.+..++|
T Consensus 26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCCCCCC
Confidence 444567889999999999999999999974 458999999999 99999999999997 579999999988744434799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.|+.. -+ ..++.+++.+...|||||++|..
T Consensus 105 aiFIG---Gg----~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 105 AIFIG---GG----GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred EEEEC---CC----CCHHHHHHHHHHHcCcCCeEEEE
Confidence 99943 22 56789999999999999999954
No 64
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.48 E-value=3.8e-13 Score=128.15 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=93.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
...+.......++.+|||+|||+|.+++.++..|. +|+|+|+++ |+..|+++++..|+.+ +.++++|+.++++++++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCC
Confidence 33444445567889999999999999998888764 999999999 9999999999999876 89999999998877689
Q ss_pred eeEEEEecCccccCC-------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|+++++ |+... ......++..+.++|||||+++.
T Consensus 249 ~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 249 VDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 999999964 43311 13357899999999999999873
No 65
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=5.3e-13 Score=132.12 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=93.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....+|.+|||+|||+|..+..+++. +.++|+|+|+++ +++.+++++++.|+. +|+++++|+..+. +.++||+|+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEE
Confidence 45578899999999999999998873 346999999999 999999999999984 6999999998875 347899999
Q ss_pred EecCccccCCh------------h-------hHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 195 SEWMGYFLLFE------------N-------MLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 195 ~~~~~~~l~~~------------~-------~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
+++++++.... . ....++..+.++|||||++++++|++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 98776554211 1 123689999999999999999888864
No 66
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=4.2e-13 Score=122.94 Aligned_cols=95 Identities=31% Similarity=0.449 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++.+++.+..++ .+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCc
Confidence 357889999999999999998888887899999999 999999999998875545544332 27999998753
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
. ..+..++..+.++|||||.++.+
T Consensus 189 ~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 189 A------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred H------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 34567888999999999999953
No 67
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=4.5e-13 Score=119.99 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=83.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.....++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|+++++.+++ ++++++++|+.+......+|
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~f 147 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPY 147 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCC
Confidence 444455678999999999999999999985 3 24799999999 99999999999998 56999999998754444689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++.... ..+...+.+.|+|||+++.
T Consensus 148 D~Ii~~~~~---------~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 148 DRIYVTAAG---------PKIPEALIDQLKEGGILVM 175 (215)
T ss_pred CEEEEcCCc---------ccccHHHHHhcCcCcEEEE
Confidence 999976421 2234556788999999874
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=4.8e-13 Score=119.38 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=83.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.....++.+|||||||+|.++..+++. +. .+|+++|+++ +++.|+++++..++ ++++++++|+.....+..+|
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~f 146 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPY 146 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCc
Confidence 444456778999999999999999999885 32 6999999999 99999999999988 46999999988765555789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++... . ..+...+.+.|||||+++.
T Consensus 147 D~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 147 DRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred CEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 99997532 2 1233456678999999874
No 69
>PRK06922 hypothetical protein; Provisional
Probab=99.46 E-value=5e-13 Score=133.78 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=86.8
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEE
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIII 194 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv 194 (379)
...++.+|||+|||+|.++..+++ .+..+|+|+|+|+ |++.|+++....+ .++.++++|+.+++ +++++||+|+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEE
Confidence 345788999999999999888887 4557999999999 9999998876655 35889999998876 5668999999
Q ss_pred EecCccccC----------ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 195 SEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 195 ~~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+..+.+.+. ....+..+++++.++|||||.++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 875433221 1246789999999999999999853
No 70
>PRK08317 hypothetical protein; Provisional
Probab=99.46 E-value=1.2e-12 Score=118.77 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=92.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+...+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.++++.. ....++.++..|+..++++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCC
Confidence 3444555566778899999999999999999884 346999999999 9999988733 2235699999999988877
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.++||+|++..+ +.+..++..+++++.++|+|||.++...
T Consensus 85 ~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 DGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 789999998654 3344677889999999999999998654
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=9.8e-13 Score=118.47 Aligned_cols=105 Identities=26% Similarity=0.285 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...++.+|||+|||+|.++..+++.+..+|+++|+++ +++.+++++..+++ ++.++++|+.+. ++.++||+|++++
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECC
Confidence 3467889999999999999999998767999999999 99999999998886 488999998764 3457899999986
Q ss_pred CccccCCh-------------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFE-------------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~-------------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ |..... ..+..++..+.++|||||+++.
T Consensus 110 P-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 110 P-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred C-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3 332211 1256788889999999999883
No 72
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.45 E-value=6.7e-13 Score=128.58 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeecc--C--CCCceeEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE--L--PVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~--~~~~~D~Iv 194 (379)
.++++|||+|||+|.+++.++..|+.+|++||+|+ +++.|++++..|++. ++++++++|+.++. + ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 36789999999999999988877778999999999 999999999999986 47999999998752 1 236899999
Q ss_pred EecCccccCChh-------hHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 195 SEWMGYFLLFEN-------MLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 195 ~~~~~~~l~~~~-------~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
++++ ++..... ....++....++|+|||.++.++|+-++
T Consensus 299 lDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 299 MDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred ECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 9986 4433321 2345566778999999999976655433
No 73
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=7.2e-13 Score=115.22 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+++|+++ +++.+++++..++. +++++++|+.+.. . ++||+|+++++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~-~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-R-GKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-C-CcccEEEECCC
Confidence 34667899999999999999999876 999999999 99999999998876 4899999987653 3 68999999865
Q ss_pred ccccCC------------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLF------------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~------------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.... ......++.++.++|+|||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 322211 11256789999999999999874
No 74
>PRK05785 hypothetical protein; Provisional
Probab=99.45 E-value=3.3e-13 Score=121.55 Aligned_cols=90 Identities=23% Similarity=0.254 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
++.+|||||||||.++..+++....+|+|+|+|+ |++.|++. ..++++|++++++++++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--- 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--- 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC---
Confidence 4779999999999999999986335999999999 99999763 2357899999999889999999853
Q ss_pred ccCChhhHHHHHHHHHhcccCCE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
.+.+..++..+++++.|+|||.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCce
Confidence 45666788999999999999954
No 75
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=6e-13 Score=125.08 Aligned_cols=102 Identities=26% Similarity=0.467 Sum_probs=83.6
Q ss_pred CEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++.++|+++++|+.+. ++.++||+|+++++ |.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP-yi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPP-YV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCC-CC
Confidence 68999999999999999984 456999999999 9999999999999877899999998653 33368999999864 22
Q ss_pred cC-----------Ch------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 202 LL-----------FE------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 202 l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
-. ++ .....++..+.++|+|||.++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 11 2346788899999999999984
No 76
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.45 E-value=1e-12 Score=119.27 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=92.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++.+ ..+|+++|+++ +++.+++++..+++..++.++.+|+.+++.+.+.|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 122 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSF 122 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCc
Confidence 3333444577899999999999999999865 47999999999 99999999887766667999999999887666789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++.. .+.+..++..++..+.++|+|||.++.
T Consensus 123 D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 123 DAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred cEEEEec---ccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 9999753 344556788999999999999999874
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.43 E-value=9.9e-13 Score=122.70 Aligned_cols=124 Identities=24% Similarity=0.300 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcc-CCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 103 DVVRTKSYQNVIYQNK-FLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~-~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
++..++.+...+.... ...++.+|||+|||+|.+++.++.. +..+|+|+|+|+ +++.|++++..+++.++++++++|
T Consensus 94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 4444555555444322 1223369999999999999999985 446999999999 999999999999987679999999
Q ss_pred eeeccCCCCceeEEEEecCccccC-----------Ch------------hhHHHHHHHHHhcccCCEEEEec
Q 016992 180 IEEIELPVTKVDIIISEWMGYFLL-----------FE------------NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~~~l~-----------~~------------~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+. ++..+||+|+++++ |.-. ++ ..+..++..+.++|+|||+++..
T Consensus 174 ~~~~-~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 174 LFEP-LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred hhcc-CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 8763 33348999999853 2211 11 14567888899999999999853
No 78
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.43 E-value=1e-12 Score=129.42 Aligned_cols=136 Identities=13% Similarity=-0.024 Sum_probs=104.4
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhcc--CCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNK--FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANM 159 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~--~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~ 159 (379)
..|..++...+...+|+ ....+ ...+|.+|||+|||+|+.+.++|.. +.+.|+++|+++ .++.
T Consensus 86 ~~~~~G~~yvQd~sS~l------------~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~ 153 (470)
T PRK11933 86 AEHLSGLFYIQEASSML------------PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKV 153 (470)
T ss_pred hHHHCCcEEEECHHHHH------------HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence 45556665555555554 11112 5579999999999999999999984 346999999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecCccccCC---hhh----------------HHHHHHHHHhcc
Q 016992 160 AKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWMGYFLLF---ENM----------------LNTVLYARDKWL 219 (379)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~L 219 (379)
+++++++.|+. +|.+.+.|...+. ...+.||.|+.+.+|++... .++ -..+|....++|
T Consensus 154 L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L 232 (470)
T PRK11933 154 LHANISRCGVS-NVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL 232 (470)
T ss_pred HHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999995 5899999988763 11367999999988775421 111 157888899999
Q ss_pred cCCEEEEecCCceE
Q 016992 220 VDDGIVLPDKASLY 233 (379)
Q Consensus 220 kpgG~lip~~~~~~ 233 (379)
||||+|++++|++.
T Consensus 233 kpGG~LVYSTCT~~ 246 (470)
T PRK11933 233 KPGGTLVYSTCTLN 246 (470)
T ss_pred CCCcEEEEECCCCC
Confidence 99999999999853
No 79
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.43 E-value=2.7e-12 Score=113.23 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=84.0
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~ 190 (379)
+.......++.+|||+|||+|.++..+++. +..+|+++|+++ +++.++++++.+++ ++++++++|+.+. +.....+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCC
Confidence 444455678899999999999999999874 457999999999 99999999999988 4699999998652 2111346
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|.++.+. ...+..++..+.++|+|||.++..
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 7776532 134578899999999999999844
No 80
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=5e-13 Score=113.61 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.|. +|+|+|+++ +++. .++.....+......+.++||+|+|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 57888999999999999999988877 999999999 8887 1133333333344445689999998755
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..++..+++.+.++|||||.++..
T Consensus 88 ---l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 88 ---LEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ---GGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred ---HhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 444468999999999999999999853
No 81
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=3.4e-14 Score=111.04 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=61.6
Q ss_pred EEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCcccc
Q 016992 127 LDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFL 202 (379)
Q Consensus 127 LDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~l 202 (379)
||||||+|.++..+++. +..+++|+|+|+ |++.|++++...+.. ....+..+..+.... .++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999998885 556999999999 999999999887653 233444333332211 2599999986554444
Q ss_pred CChhhHHHHHHHHHhcccCCEEE
Q 016992 203 LFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
.++..+++.+.++|||||+|
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 78889999999999999986
No 82
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=1.9e-12 Score=116.30 Aligned_cols=112 Identities=23% Similarity=0.252 Sum_probs=90.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+...+.......++.+|||+|||+|.++..+++... .+++++|+++ +++.++++.. ...++.++.+|+.+.+++
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC
Confidence 334444444455788999999999999999998644 5999999999 9999988775 335689999999988776
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.++||+|++.. .+.+..++..+++.+.++|+|||.++.
T Consensus 104 ~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 104 DNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 67899999753 345557788999999999999999884
No 83
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.42 E-value=1.1e-12 Score=115.55 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~ 196 (379)
...+|||||||+|.++..+++. +...|+|+|+++ +++.|++++...++. +++++++|+.++. ++++.+|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999884 557999999999 999999999998885 7999999998754 344689999987
Q ss_pred cCccccC--C---hhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLL--F---ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....... + .-....++..+.++|||||.++.
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 5322111 0 01125789999999999999984
No 84
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=3.5e-12 Score=114.56 Aligned_cols=103 Identities=25% Similarity=0.250 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ |+..|++++...+..+++.+.++|+.+++ ++||+|++..+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 45788999999999999999998755 999999999 99999999988877667999999998765 78999998433
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+++ ....+..++.++.+++++++.+.+
T Consensus 129 l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2222 224567889999999988777664
No 85
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=2.6e-12 Score=123.34 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=96.5
Q ss_pred hhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcE
Q 016992 96 IHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVI 173 (379)
Q Consensus 96 ~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i 173 (379)
.....+.++..++.+.+.+.... .++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|+++++.++. ++
T Consensus 227 V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV 302 (423)
T PRK14966 227 VNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RV 302 (423)
T ss_pred eCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cE
Confidence 33445556777788887776443 4567999999999999999887 4567999999999 99999999998875 69
Q ss_pred EEEEcceeeccCC-CCceeEEEEecCccccCCh-----------------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 174 TVLKGKIEEIELP-VTKVDIIISEWMGYFLLFE-----------------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 174 ~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~-----------------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++++|+.+..++ .++||+|+|+++ |.-..+ ..+..++..+.+.|+|||.++.
T Consensus 303 ~fi~gDl~e~~l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 303 EFAHGSWFDTDMPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EEEEcchhccccccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999998764332 357999999974 322111 1235777778899999999873
No 86
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.40 E-value=1.5e-12 Score=130.26 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=100.9
Q ss_pred chhhHHhhcCHHHHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCchHHHHHHH-cCCCEE
Q 016992 94 FGIHEEMLKDVVRTKSYQNVIYQNKF------------------------LFKDKVVLDVGAGTGILSLFCAK-AGAAHV 148 (379)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~------------------------~~~~~~VLDlGcG~G~~~~~la~-~g~~~v 148 (379)
+......|-++..++.+.+.+..... ..++.+|||+|||+|.+++.++. .+..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 44555677778888888876654321 11346899999999999998887 456799
Q ss_pred EEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCC------------h----------
Q 016992 149 YAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF------------E---------- 205 (379)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~------------~---------- 205 (379)
+|+|+|+ +++.|++++..+++.+++.++++|+.+. ++.++||+|+|+++ |.... +
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 9999999 9999999999999877899999998653 33468999999863 32211 1
Q ss_pred --hhHHHHHHHHHhcccCCEEEEec
Q 016992 206 --NMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 206 --~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+..++..+.++|+|||.++..
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 12356778888999999999854
No 87
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=109.01 Aligned_cols=108 Identities=27% Similarity=0.342 Sum_probs=86.1
Q ss_pred EEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc-
Q 016992 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF- 201 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~- 201 (379)
+|||+|||.|.+...+++.|. ...+|||.|+ +++.|+..+++.++++.|+|.+.|+.+..+..++||+|+--.....
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAi 149 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAI 149 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeee
Confidence 999999999999999999765 3599999999 9999999999999998899999999987655688998875321111
Q ss_pred -cCC---hhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 202 -LLF---ENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 202 -l~~---~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
|.. .+.+...+..+.++|+|||++++..|..
T Consensus 150 sLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 150 SLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 111 1233567788899999999999665554
No 88
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=5.6e-12 Score=113.51 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=104.7
Q ss_pred hhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
..||+.+..++....+ +..+.+...+.+........+.+|||+|||+|.++..+++.+. +++++|+++ +++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~ 86 (224)
T TIGR01983 10 HEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLH 86 (224)
T ss_pred HHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHH
Confidence 5677777766555444 4555555555555432234578999999999999999988765 799999999 99999999
Q ss_pred HHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 164 VEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 164 ~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+...+.. ++.+...|+.+++.. .++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 87 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 87 AKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9887752 589999998877544 378999997543 444467789999999999999998854
No 89
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=110.60 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=83.3
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE-EEEcceeecc-CCCCceeEEEEecCcc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT-VLKGKIEEIE-LPVTKVDIIISEWMGY 200 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~D~Iv~~~~~~ 200 (379)
..||++|||||..-...--.+..+|+++|.++ |-++|.+.++++.- .++. |+.++.++++ ++++++|.||+..+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-- 154 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLV-- 154 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEE--
Confidence 46899999999764444334557999999999 99999999988854 4466 9999999998 77899999998653
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|....++.+.|+++.++|+|||++++
T Consensus 155 -LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 -LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred -EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 55568899999999999999999984
No 90
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=6.6e-12 Score=115.73 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCchH-HHHHH-Hc-CCCEEEEEecHH-HHHHHHHHHHH-cCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGIL-SLFCA-KA-GAAHVYAVECSQ-MANMAKQIVEA-NGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~-~~~la-~~-g~~~v~~vD~s~-~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
++++|+|||||.|.+ ++.++ +. +..+++++|.++ +++.|++.+.. .++.++|+|+.+|+.+.....++||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 778999999998744 44444 33 557999999999 99999999965 888888999999998864334789999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+.+ . .......+++.+.+.|+|||.++..
T Consensus 203 ALi~-~-dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 ALVG-M-DKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred cccc-c-ccccHHHHHHHHHHhcCCCcEEEEe
Confidence 3211 1 1257789999999999999999854
No 91
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=5.3e-12 Score=113.33 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=79.3
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~D 191 (379)
..+.+|.+|||+|||+|.++..+++. +.++|+|+|+++ |++.+.++++.. .+|.++.+|+... .+. ++||
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~-~~~D 143 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV-EKVD 143 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc-ccCC
Confidence 56778999999999999999999995 446999999999 999887776653 4589999998752 223 5699
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. .......++.++.++|||||.++.
T Consensus 144 ~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9997632 111234568899999999999884
No 92
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.38 E-value=3.9e-12 Score=123.10 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+.+.....++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++. ++ .+++...|..++ +++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCC
Confidence 34445556778999999999999999999985334999999999 9999999874 33 388888888765 2789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
|+|++..+..++ +...+..+++.+.++|||||.++..
T Consensus 230 D~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 230 DRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999986543322 2345678999999999999999854
No 93
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.38 E-value=2.2e-12 Score=134.17 Aligned_cols=109 Identities=19% Similarity=0.144 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeeccC-CCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIEL-PVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~-~~~~~D~Iv~~~ 197 (379)
.+|++|||+|||+|.+++.+++.|+.+|++||+|+ +++.|++++..|++. ++++++++|+.+... ..++||+||+++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 35789999999999999999998888999999999 999999999999996 579999999876421 136899999997
Q ss_pred CccccCC---------hhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 198 MGYFLLF---------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 198 ~~~~l~~---------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+ ++... ......++..+.++|+|||.++.+.+
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 5 32221 22456788888999999999986543
No 94
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.38 E-value=5.1e-12 Score=114.65 Aligned_cols=100 Identities=27% Similarity=0.342 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..+.+|||+|||+|.++..+++.+ ..+|+++|+++ ++..+++... .++.++.+|+.+.++++++||+|++..+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 345799999999999999999864 46799999999 9999887654 3588999999998877789999998654
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+.+..++..++.++.++|+|||.++..
T Consensus 108 ---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 108 ---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 334467789999999999999999854
No 95
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=6.1e-12 Score=119.78 Aligned_cols=102 Identities=22% Similarity=0.208 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
...+|||+|||+|.++..+++. +..+|+++|+++ +++.|+++++.+++. .+++..|+... . .++||+|+|+++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~-~~~fDlIvsNPPF 271 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-I-KGRFDMIISNPPF 271 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-c-CCCccEEEECCCc
Confidence 3458999999999999999985 446999999999 999999999999874 46777887653 3 3789999999753
Q ss_pred cccC--ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... .......++..+.+.|||||.++.
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 3211 124567899999999999999873
No 96
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.37 E-value=4.7e-12 Score=115.42 Aligned_cols=112 Identities=20% Similarity=0.144 Sum_probs=85.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+........|++|||||||.|..+..+++.|++.|+|+|.+. .....+....-.|....+.++..-+++++. .+.||+
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCE
Confidence 334445678999999999999999999999999999999998 655544333333433334555456777776 589999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+|-.+.|+. .++-..|..+...|+|||.+|..+
T Consensus 186 VF~MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYHR---RSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhcc---CCHHHHHHHHHHhhCCCCEEEEEE
Confidence 9996654444 677889999999999999998553
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.37 E-value=7.4e-12 Score=110.91 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..++.+|||+|||+|.++..+++. +..+|+|+|+|+ |++.|+++.. ++.++++|+.+ ++++++||+|++..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 356779999999999999999885 567999999999 9999987642 36788899887 66678999999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+++ ....+..+++++.++++ +.++
T Consensus 114 vL~hl-~p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 114 VLIHI-NPDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred hhhhC-CHHHHHHHHHHHHhhcC--cEEE
Confidence 54444 23567888999998873 4444
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=1e-11 Score=111.03 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=81.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.......++.+|||+|||+|.++..+++.. .+|+++|.++ +++.|+++++..++. +++++++|+.+...+.++||+
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~ 147 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPAYAPFDR 147 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCcCCCcCE
Confidence 3444556788999999999999999888874 4899999999 999999999999885 499999998654333478999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|++... . ..+...+.+.|+|||.++.
T Consensus 148 I~~~~~---~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 148 ILVTAA---A------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred EEEccC---c------hhhhHHHHHhcCCCcEEEE
Confidence 997542 1 2234556789999999874
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.36 E-value=1.1e-11 Score=113.64 Aligned_cols=117 Identities=26% Similarity=0.300 Sum_probs=88.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
...+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++..+++. ++.++++|+.+.
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~- 149 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP- 149 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc-
Confidence 3344444443332 34569999999999999999984 456999999999 999999999999885 699999999763
Q ss_pred CCCCceeEEEEecCccccCC------------h------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 185 LPVTKVDIIISEWMGYFLLF------------E------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~------------~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.++||+|+++++ +.... + .....++..+.++|+|||.++.
T Consensus 150 ~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 150 LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 44588999999865 32211 0 1124678899999999999884
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=99.35 E-value=1.3e-11 Score=107.93 Aligned_cols=104 Identities=26% Similarity=0.354 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.++..+++.+ .+|+++|.++ +++.+++++..+++.++ +.++++|+.+.. ...+||+|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-RGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-cccCceEEEECCC
Confidence 577899999999999999999984 6999999999 99999999998887544 889999987643 3358999998754
Q ss_pred ccccC-------------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLL-------------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~-------------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... +...+..++.++.++|||||.+++
T Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 100 -YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred -cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2110 122356789999999999998874
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.35 E-value=1.3e-11 Score=116.59 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.......++.+|||||||+|.+++.+++. +..+++++|...+++.+++++...++.++|+++.+|+.+.+++ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC--C
Confidence 344555555677889999999999999999985 5569999998339999999999999988999999999876554 3
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|+|++..+.+.. .......+++++.+.|+|||+++..
T Consensus 216 ~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 216 ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6998854332221 2344568999999999999999854
No 102
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.35 E-value=5.3e-12 Score=116.30 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCCch----HHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH----cC-----------------
Q 016992 121 FKDKVVLDVGAGTGI----LSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA----NG----------------- 168 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~----~~~~la~~g------~~~v~~vD~s~-~~~~a~~~~~~----~~----------------- 168 (379)
.++.+|||+|||||. +++.+++.+ ..+|+|+|+|+ |++.|++.+.. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 455799999999995 666666632 24899999999 99999885410 01
Q ss_pred -----CCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 169 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 169 -----~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++|+|.++|+.+.+.+.++||+|+|..+..++ .......++.++.+.|+|||+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEE
Confidence 2246899999999887766899999996553333 234567899999999999999984
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=1e-11 Score=115.35 Aligned_cols=124 Identities=24% Similarity=0.291 Sum_probs=92.7
Q ss_pred hcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 016992 101 LKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (379)
Q Consensus 101 l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (379)
+.+...++.+.+.+.......++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++. .....++.++++
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~ 165 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG 165 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEc
Confidence 3344555666666654444567789999999999999999985 457999999999 9999999988 344467999999
Q ss_pred ceeeccCCCCceeEEEEecCccccC------------------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 179 KIEEIELPVTKVDIIISEWMGYFLL------------------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 179 d~~~~~~~~~~~D~Iv~~~~~~~l~------------------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+.+.. +.++||+|+++++ |.-. +......++..+.++|+|||.++.
T Consensus 166 d~~~~~-~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 166 DWFEPL-PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cccCcC-CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 986532 2478999999864 2211 112245778888899999999984
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=7.3e-12 Score=125.46 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=86.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--ccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~ 190 (379)
+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++. ++...+++++++|+.. +++++++|
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCE
Confidence 3334444567899999999999999999974 5999999999 99887653 2223569999999964 45666899
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
|+|++..+.+++. ...+..++.++.++|||||++++..
T Consensus 105 D~I~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 105 DLIFSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred EEEehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999987655443 2346899999999999999998654
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-11 Score=109.61 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=94.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
|.....+.+|.+|||.|.|+|.++..+|+. +.++|+.+|+.+ +++.|++|+...++.++|++..+|+.+...+ +.|
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc-ccc
Confidence 556678899999999999999999999983 448999999999 9999999999999988899999999998777 599
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|.|+.++ +++-.++..+...|||||.++.
T Consensus 165 Dav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 165 DAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred CEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 9999875 5778999999999999999873
No 106
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.2e-11 Score=114.52 Aligned_cols=126 Identities=25% Similarity=0.311 Sum_probs=92.6
Q ss_pred hHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 016992 97 HEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (379)
Q Consensus 97 ~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (379)
....+.++..++.+.+.+......... +|||+|||+|.+++.++.. +...|+|+|+|+ +++.|++|+..+++ .++.
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~ 163 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVL 163 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEE
Confidence 334555666677777765422222222 8999999999999999995 446999999999 99999999999998 5677
Q ss_pred EEEcceeeccCCCCceeEEEEecCccccCC-----------h------------hhHHHHHHHHHhcccCCEEEEe
Q 016992 175 VLKGKIEEIELPVTKVDIIISEWMGYFLLF-----------E------------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 175 ~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~-----------~------------~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.+|..+- +. ++||+|||+++ |.-.. + .....++..+.+.|+|||.++.
T Consensus 164 ~~~~dlf~~-~~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 164 VVQSDLFEP-LR-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred EEeeecccc-cC-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 777765543 23 58999999974 43221 1 1236788888999999999883
No 107
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.34 E-value=1.6e-11 Score=107.87 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.++..++.+|+++|.++ +++.++++++.+++. +++++++|+.+.. ...++||+|+++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 46789999999999999976655678999999999 999999999999984 6999999987642 12357999999986
Q ss_pred ccccCChhhHHHHHHHHHh--cccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDK--WLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~--~LkpgG~lip~ 228 (379)
|. .+....++..+.. +|+|+|.++.+
T Consensus 131 -y~---~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 131 -FR---KGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred -CC---CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 32 2445555665544 47898888754
No 108
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.33 E-value=1.8e-11 Score=108.95 Aligned_cols=101 Identities=19% Similarity=0.106 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEcceeeccC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (379)
.++.+|||+|||.|..+..+|+.|. +|+|||+|+ +++.+.+ ++++ ..+|+++++|+.+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4677999999999999999999987 999999999 9997643 2222 1358999999998764
Q ss_pred C-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .+.||.|+...+... ........++..+.++|||||.++
T Consensus 109 ~~~~~fD~i~D~~~~~~-l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIA-LPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred ccCCCcCEEEechhhcc-CCHHHHHHHHHHHHHHcCCCCeEE
Confidence 2 367999987543222 244566789999999999999865
No 109
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.7e-11 Score=103.92 Aligned_cols=77 Identities=29% Similarity=0.340 Sum_probs=69.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
......|++|+|+|||||.+++.++-+|+..|+|||+++ +++.+++|..+.+ .+|.|+++|+.++. .++|.++.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC---CccceEEE
Confidence 456678999999999999999999999999999999999 9999999999843 67999999999885 66899999
Q ss_pred ecC
Q 016992 196 EWM 198 (379)
Q Consensus 196 ~~~ 198 (379)
+++
T Consensus 115 NPP 117 (198)
T COG2263 115 NPP 117 (198)
T ss_pred CCC
Confidence 874
No 110
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=118.21 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=85.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~ 195 (379)
...+..+||||||+|..+..+|+. +...++|+|++. ++..|.+++..+++. ++.++++|+..+ .++++++|.|++
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEE
Confidence 345679999999999999999984 567999999999 999999999999985 599999999765 356789999998
Q ss_pred ecCccccCCh-h--hHHHHHHHHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFE-N--MLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.......-.. . ..+.++.++.++|+|||.+...
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 6432211000 0 1268899999999999998753
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.8e-11 Score=111.88 Aligned_cols=108 Identities=25% Similarity=0.256 Sum_probs=85.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
+.+......+.+|||+|||.|.+++.+++. +..+++-+|.|. +++.|++++..|++.+. .++..|..+-. . ++||
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~-~kfd 226 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-E-GKFD 226 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-c-cccc
Confidence 455555555669999999999999999995 568999999999 99999999999998653 66666665543 3 4999
Q ss_pred EEEEecCccccCChhhH----HHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENML----NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~----~~~l~~~~~~LkpgG~li 226 (379)
+|||+++.+- +.... ..++....+.|++||.|.
T Consensus 227 ~IisNPPfh~--G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 227 LIISNPPFHA--GKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred EEEeCCCccC--CcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 9999986332 22233 388999999999999876
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.32 E-value=2.3e-11 Score=111.21 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhccC-CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 105 VRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
..++.+.+.+..... ...+.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|++++..++ ++++++|+.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence 345555555543322 12345899999999999999987 4446999999999 9999999998875 478889987
Q ss_pred eccC--CCCceeEEEEecCccccC------------C------------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 182 EIEL--PVTKVDIIISEWMGYFLL------------F------------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 182 ~~~~--~~~~~D~Iv~~~~~~~l~------------~------------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... ..++||+|+++++ |.-. + ...+..++..+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 144 DALPTALRGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred hhcchhcCCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5321 1257999999975 3211 0 11245788888899999999984
No 113
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.31 E-value=3.9e-12 Score=109.36 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=87.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
.....+..+|.|||||+|..+..+++ .+...|+|+|.|+ |++.|+++. .+++|..+|+.++..+ ..+|+++
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~-~~~dllf 97 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPE-QPTDLLF 97 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCC-Cccchhh
Confidence 35556778999999999999999998 5778999999999 999997654 3489999999999755 8899999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
++.+...+ ++-..++..+...|.|||++-.+....
T Consensus 98 aNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 98 ANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 98875555 555678888889999999997544433
No 114
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-11 Score=106.88 Aligned_cols=103 Identities=23% Similarity=0.199 Sum_probs=83.6
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+.+.+.++.+|||||||+|..+..+|+.. .+|+++|..+ .++.|++++...|+.+ |.++++|...-..+..+||.
T Consensus 64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~ 141 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDR 141 (209)
T ss_pred HHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCE
Confidence 4455678899999999999999999999973 3999999999 9999999999999965 99999998876555589999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+...-.. ..+ ..+.+.||+||+++.
T Consensus 142 I~Vtaaa~-----~vP----~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 142 IIVTAAAP-----EVP----EALLDQLKPGGRLVI 167 (209)
T ss_pred EEEeeccC-----CCC----HHHHHhcccCCEEEE
Confidence 99754211 122 234478999999873
No 115
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.31 E-value=1.3e-11 Score=113.81 Aligned_cols=124 Identities=23% Similarity=0.231 Sum_probs=90.6
Q ss_pred cCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcc
Q 016992 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGK 179 (379)
Q Consensus 102 ~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d 179 (379)
-|...+..+.... .+|++|||+-|=||.++++++..|+.+|++||.|. +++.|++++..||++ +++++++.|
T Consensus 109 lDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~D 182 (286)
T PF10672_consen 109 LDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGD 182 (286)
T ss_dssp GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-
T ss_pred HHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC
Confidence 3445555554333 46889999999999999999999999999999999 999999999999986 689999999
Q ss_pred eeeccC---CCCceeEEEEecCccccCC---hhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 180 IEEIEL---PVTKVDIIISEWMGYFLLF---ENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 180 ~~~~~~---~~~~~D~Iv~~~~~~~l~~---~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+.+.-- ..++||+||++|+.+.-.. ..+...++..+.++|+|||.++.++|+
T Consensus 183 vf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 183 VFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 976421 1468999999987543211 234567888889999999999865543
No 116
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.31 E-value=1.3e-11 Score=111.64 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C----CCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~D 191 (379)
.++++|||+|||+|..++.+++. +.++|+++|+++ +++.|+++++.+|+.++|+++.+|+.+.- + +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 56789999999999988888873 457999999999 99999999999999889999999997741 1 136899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
+|+.+.. ......++..+.++|+|||.++....-
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9997642 145567888889999999999865543
No 117
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.28 E-value=2.3e-11 Score=112.89 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C---CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G---AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g---~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+.+|||+|||+|.++..+++. + ...|+|+|+|+ |++.|+++. .++.++.+|+.++++++++||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 35578999999999999988874 2 23799999999 999997653 3488999999999888889999997
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
... +..+.++.|+|||||.++.
T Consensus 158 ~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 158 IYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred ecC----------CCCHHHHHhhccCCCEEEE
Confidence 431 1235778899999999983
No 118
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.28 E-value=1.9e-11 Score=116.97 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=94.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeecc----CCCCceeEEEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEIE----LPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~~D~Iv~ 195 (379)
.|++|||+-|=||.+++++|..|+++|++||.|. .+++|++|+.-||+. +++.++++|+.++- -...+||+||.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 4999999999999999999999999999999999 999999999999985 66899999998763 22468999999
Q ss_pred ecCccccCCh-------hhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 196 EWMGYFLLFE-------NMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 196 ~~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
+|+.+ ..+. .+...++..+.++|+|||.++.++|+-..
T Consensus 297 DPPsF-~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 297 DPPSF-ARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred CCccc-ccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 98643 3332 23467888889999999999977666543
No 119
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=3e-11 Score=109.48 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~----g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
..++.+|||||||+|.++..+++. | ..+|+|+|+|+ |++.|+++.... ++++...++..++.++++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence 356779999999999998888752 3 24999999999 999998876543 3566667776666666899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++..+.+++. ...+..+++++.++++ |+.++
T Consensus 134 ~~~~~lhh~~-d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 134 TSNHFLHHLD-DAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EECCeeecCC-hHHHHHHHHHHHHhcC-eeEEE
Confidence 9975434332 2235689999999998 44443
No 120
>PHA03412 putative methyltransferase; Provisional
Probab=99.28 E-value=2e-11 Score=108.42 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc----CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA----GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
.+.+|||+|||+|.+++.+++. +..+|++||+++ +++.|++++. ++.++++|+....+. ++||+||++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~-~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD-TLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc-CCccEEEEC
Confidence 3679999999999999998873 345899999999 9999997752 378999999876654 789999999
Q ss_pred cCccccCCh----------hhHHHHHHHHHhcccCCEEEEecCC
Q 016992 197 WMGYFLLFE----------NMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 197 ~~~~~l~~~----------~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
++ |+.... .....++....+++++|+.++|...
T Consensus 122 PP-Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 122 PP-FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CC-CCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 75 442211 1245678888889999998888653
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=4.9e-11 Score=112.29 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=81.1
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.....++.+|||+|||+|.++..+++. +. ++|+++|.++ +++.|+++++.+++ +++.++++|+.+......+|
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCc
Confidence 333445678899999999999999999984 32 4799999999 99999999999998 46999999987665444679
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+|++.. ++ ..+...+.+.|+|||.++.
T Consensus 151 D~Ii~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 151 DVIFVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred cEEEECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 9999742 22 1223445678999999774
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.27 E-value=3.1e-11 Score=107.35 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CCCCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPVTK 189 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 189 (379)
..++.+|||||||+|.++..+++. + ..+|+|||+++|. ++ .+++++++|+.+.. +..++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PI-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CC-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 467889999999999999999885 3 3699999998731 22 24899999998853 44578
Q ss_pred eeEEEEecCccccCCh--h------hHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEWMGYFLLFE--N------MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~--~------~~~~~l~~~~~~LkpgG~lip 227 (379)
||+|+|++..+..... . ....++..+.++|||||.++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999998643332211 0 124688999999999999983
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.27 E-value=1.6e-11 Score=108.59 Aligned_cols=103 Identities=22% Similarity=0.216 Sum_probs=77.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.+.+.+|.+|||||||+|..+..+++. |. .+|++||..+ +++.|++++...++. +|.++++|......+..+|
T Consensus 64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG-SE
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccCCCc
Confidence 445566889999999999999999999995 43 4799999999 999999999999984 6999999987654445789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|.|++... .. ..+ ..+.+.|++||+++
T Consensus 143 D~I~v~~a---~~--~ip----~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 143 DRIIVTAA---VP--EIP----EALLEQLKPGGRLV 169 (209)
T ss_dssp EEEEESSB---BS--S------HHHHHTEEEEEEEE
T ss_pred CEEEEeec---cc--hHH----HHHHHhcCCCcEEE
Confidence 99997532 21 222 33557899999988
No 124
>PRK04457 spermidine synthase; Provisional
Probab=99.26 E-value=3.1e-11 Score=111.06 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Iv~~~ 197 (379)
.++++|||||||+|.++..+++ .+..+|++||+++ +++.|++++...+..++++++.+|+.++. ...++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999887 4667999999999 99999998876555467999999987652 1136899999875
Q ss_pred Cccc-cCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYF-LLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.... ....-....++..+.+.|+|||+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 3211 11001236889999999999999984
No 125
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.26 E-value=1.5e-11 Score=114.30 Aligned_cols=180 Identities=15% Similarity=0.067 Sum_probs=126.3
Q ss_pred CCCcccccceeeccccccccccccccccCCCCcCCCCCcccccccccCCCcccCCCCCCCccchhhhhccCcchhhHHhh
Q 016992 22 SNPDRQQHNTITRFADAEEDDATASSILDDSVAAPVDGTAIEDEAMCDADVSMIDGEDDKTSADYYFDSYSHFGIHEEML 101 (379)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l 101 (379)
=|+.+.+.+.+.+.+..++...+......+.+.. .......+.....|.+++...+...+|+
T Consensus 15 vN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~------------------~~~~~~~i~~l~~~~~G~~~vQd~sS~l 76 (283)
T PF01189_consen 15 VNTLKISREELLEELEEEGIQLEPIPRSPDALRV------------------IGKSPYSICSLPEFKNGLFYVQDESSQL 76 (283)
T ss_dssp E-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEE------------------EEECSSCGGGSHHHHTTSEEEHHHHHHH
T ss_pred ECcCcCCHHHHHHHHhhcccceEEcccccchhcc------------------ccccccchhhchhhhCCcEEeccccccc
Confidence 3566666676666666666554444333222100 0112233444567888887766665554
Q ss_pred cCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc
Q 016992 102 KDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG 178 (379)
Q Consensus 102 ~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~ 178 (379)
....+...+|..|||+|+|+|+.+.+++.. + .+.|+++|++. .+...++++++.|+. ++.++..
T Consensus 77 ------------~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~ 143 (283)
T PF01189_consen 77 ------------VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINA 143 (283)
T ss_dssp ------------HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEES
T ss_pred ------------ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEee
Confidence 222356789999999999999999999994 3 57999999999 999999999999995 5888888
Q ss_pred ceeecc--CCCCceeEEEEecCccccCC---hhh----------------HHHHHHHHHhcc----cCCEEEEecCCce
Q 016992 179 KIEEIE--LPVTKVDIIISEWMGYFLLF---ENM----------------LNTVLYARDKWL----VDDGIVLPDKASL 232 (379)
Q Consensus 179 d~~~~~--~~~~~~D~Iv~~~~~~~l~~---~~~----------------~~~~l~~~~~~L----kpgG~lip~~~~~ 232 (379)
|..... .....||.|+.+.++++... .++ -..+|+...+++ ||||++++++|++
T Consensus 144 D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 144 DARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 888762 22246999999998887621 111 147889999999 9999999999886
No 126
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=7.7e-11 Score=105.34 Aligned_cols=101 Identities=22% Similarity=0.162 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC--------------CCcEEEEEcceeeccC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF--------------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 185 (379)
.++.+|||+|||.|..+..+|+.|. +|+|||+|+ +++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4677999999999999999999987 999999999 9987642 2322 2568999999998854
Q ss_pred C-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 P-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. ...||.|+...+.. .........++..+.++|+|||.++
T Consensus 112 ~~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 25799999765323 2345667899999999999998644
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=4.5e-11 Score=102.88 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=80.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
+.+.....++.+|||+|||+|.++..+++. ..+|+++|+++ +++.+++++... ++++++++|+.++++++..+|.
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCE
Confidence 444455677889999999999999999998 46999999999 999999887542 4699999999998877567999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+++++ |.+ ..+.+..++... .+.++|.++.
T Consensus 81 vi~n~P-y~~-~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 81 VVGNLP-YNI-STPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred EEECCC-ccc-HHHHHHHHHhcC--CCcceEEEEE
Confidence 999864 433 223444444321 2457777774
No 128
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.26 E-value=1.1e-10 Score=105.54 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..++.+|||+|||+|.++..+++.+. +|+|+|+++ |++.|++++...+..+++.++.+|+.. ..++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 35678999999999999999999865 799999999 999999999888876679999998443 3478999998543
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+++ ....+..+++.+.+.+++++.+.
T Consensus 137 l~~~-~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHY-PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcC-CHHHHHHHHHHHHhhcCCeEEEE
Confidence 2221 23456788888888776555443
No 129
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.26 E-value=4.8e-11 Score=106.15 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=96.9
Q ss_pred hhcCHHHHHHHHHHHHhccC---CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEE
Q 016992 100 MLKDVVRTKSYQNVIYQNKF---LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVIT 174 (379)
Q Consensus 100 ~l~d~~r~~~~~~~i~~~~~---~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~ 174 (379)
.+-++..++.|.+++..... ...+..+||+|||+|.+++.++. .+...|+|||.|+ ++..|.+|++++++.+++.
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 44556678888887765432 34556899999999999999888 6788999999999 9999999999999999999
Q ss_pred EEEcceeec-----cCCCCceeEEEEecCccccCCh------------------------hhHHHHHHHHHhcccCCEEE
Q 016992 175 VLKGKIEEI-----ELPVTKVDIIISEWMGYFLLFE------------------------NMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 175 ~~~~d~~~~-----~~~~~~~D~Iv~~~~~~~l~~~------------------------~~~~~~l~~~~~~LkpgG~l 225 (379)
+++-+++.- ++..+++|+++|+++ |....+ ..+..+..-..|+|+|||.+
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~ 281 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFE 281 (328)
T ss_pred EEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeE
Confidence 997665542 233589999999974 432211 01234556667999999998
Q ss_pred Eec
Q 016992 226 LPD 228 (379)
Q Consensus 226 ip~ 228 (379)
.++
T Consensus 282 ~le 284 (328)
T KOG2904|consen 282 QLE 284 (328)
T ss_pred EEE
Confidence 743
No 130
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6.4e-11 Score=113.49 Aligned_cols=138 Identities=18% Similarity=0.038 Sum_probs=107.9
Q ss_pred chhhhhccCcchhhHHhhcCHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcC---CCEEEEEecHH-HHHH
Q 016992 84 ADYYFDSYSHFGIHEEMLKDVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG---AAHVYAVECSQ-MANM 159 (379)
Q Consensus 84 ~~~y~~~~~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g---~~~v~~vD~s~-~~~~ 159 (379)
...|-+++...+...+|+ ....+...+|.+|||+|+++|+.+.++|+.. ...|+++|.++ -+..
T Consensus 130 ~~~~~~G~~~vQd~sS~l------------~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~ 197 (355)
T COG0144 130 LPEFAEGLIYVQDEASQL------------PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKR 197 (355)
T ss_pred ChhhhceEEEEcCHHHHH------------HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHH
Confidence 346777777776666665 2334678899999999999999999999952 24579999999 9999
Q ss_pred HHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecCccccCCh---hh----------------HHHHHHHHHh
Q 016992 160 AKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWMGYFLLFE---NM----------------LNTVLYARDK 217 (379)
Q Consensus 160 a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~~~~l~~~---~~----------------~~~~l~~~~~ 217 (379)
.++++++.|+.+ +.+++.|...++ ...++||.|+.+.+|++.... ++ -..+|....+
T Consensus 198 l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~ 276 (355)
T COG0144 198 LRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK 276 (355)
T ss_pred HHHHHHHcCCCc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999965 888888876553 222369999999888765321 11 1478899999
Q ss_pred cccCCEEEEecCCceEE
Q 016992 218 WLVDDGIVLPDKASLYL 234 (379)
Q Consensus 218 ~LkpgG~lip~~~~~~~ 234 (379)
+|||||.|++++|++..
T Consensus 277 ~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 277 LLKPGGVLVYSTCSLTP 293 (355)
T ss_pred hcCCCCEEEEEccCCch
Confidence 99999999999999754
No 131
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=7.6e-11 Score=103.12 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C--CCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~D~Iv~ 195 (379)
.++.+|||++||+|.+++.++..|+.+|++||.++ +++.++++++.+++.++++++++|+.+.. + ....+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 46889999999999999999999998999999999 99999999999998778999999996531 1 1124799998
Q ss_pred ecCccccCChhhHHHHHHHH--HhcccCCEEEEecC
Q 016992 196 EWMGYFLLFENMLNTVLYAR--DKWLVDDGIVLPDK 229 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lip~~ 229 (379)
+++ |.. .....++..+ ..+|+++|.++...
T Consensus 128 DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 874 432 2334444444 35799999888543
No 132
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.24 E-value=9.3e-11 Score=110.30 Aligned_cols=107 Identities=11% Similarity=-0.006 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-cCCCC----ceeE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-ELPVT----KVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~----~~D~ 192 (379)
.++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++....-.-+|.++++|+.+. +++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466899999999999999998863 35999999999 9999998877643223478899999873 44322 1223
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+++... .+.........+++.+.+.|+|||.++..
T Consensus 142 ~~~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEeccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 332221 22234556778999999999999999853
No 133
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.24 E-value=1e-10 Score=115.97 Aligned_cols=112 Identities=22% Similarity=0.154 Sum_probs=86.8
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
++.+.+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ |++.|+++++.+++. +++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 45556666655556788899999999999999999875 5999999999 999999999999984 5999999997542
Q ss_pred ---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+...+||+|+++++-.++ ..++..+.+ ++|++.++.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEE
Confidence 234679999999863322 244555544 688887763
No 134
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.23 E-value=8.1e-11 Score=106.34 Aligned_cols=106 Identities=22% Similarity=0.255 Sum_probs=84.1
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--- 186 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--- 186 (379)
.|.....+.||.+|||.|+|+|.++..+++. +.++|+..|..+ .++.|+++++..|+.++|++.+.|+.+.-++
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 3555678899999999999999999999984 458999999999 9999999999999998999999999754332
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcc-cCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~li 226 (379)
+..+|.|+.++ +.+-.++..+.+.| ++||+++
T Consensus 111 ~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 111 ESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEE
T ss_pred cCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEE
Confidence 36799999886 34556778888999 8999987
No 135
>PLN02672 methionine S-methyltransferase
Probab=99.22 E-value=8.7e-11 Score=124.89 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=100.1
Q ss_pred chhhHHhhcCHHHHHHHHHHHHhccC-CCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCC
Q 016992 94 FGIHEEMLKDVVRTKSYQNVIYQNKF-LFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFS 170 (379)
Q Consensus 94 ~~~~~~~l~d~~r~~~~~~~i~~~~~-~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~ 170 (379)
+......+-++..++.+.+.+..... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++|++.+++.
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 34455567677778888877543211 124579999999999999999984 457999999999 999999999987542
Q ss_pred ---------------CcEEEEEcceeeccCC-CCceeEEEEecCccccCC------------------------------
Q 016992 171 ---------------NVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLF------------------------------ 204 (379)
Q Consensus 171 ---------------~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~------------------------------ 204 (379)
++++++++|+.+.... ..+||+||++++ |....
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 4799999998765322 136999999874 33211
Q ss_pred ------hhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 205 ------ENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 205 ------~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
...+..++....++|+|||.++...+
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 01235777888899999999986654
No 136
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=109.67 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|+++++.+++ ++++++++|+.++.. ..++||+|+++++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 457899999999999999999976 5999999999 99999999999998 579999999987642 2357999999986
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-.++ ...++..+.+ ++|++.++
T Consensus 250 r~G~-----~~~~~~~l~~-~~~~~ivy 271 (315)
T PRK03522 250 RRGI-----GKELCDYLSQ-MAPRFILY 271 (315)
T ss_pred CCCc-----cHHHHHHHHH-cCCCeEEE
Confidence 4332 2233333333 57776655
No 137
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=1.4e-10 Score=106.53 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=77.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec---cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI---ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~D 191 (379)
+.+.++.+|||+|||+|.++.++++. + ...|+|||+++ |.+.+.+.+... .+|.++..|+... ....+.||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCC
Confidence 45688999999999999999999995 3 46999999998 776555544432 4588999998642 12236799
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. .......++.++.++|||||.|+.
T Consensus 205 vV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999852 113444666788999999999984
No 138
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.20 E-value=1.4e-10 Score=89.75 Aligned_cols=101 Identities=31% Similarity=0.343 Sum_probs=81.1
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-CCCceeEEEEecCcccc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-PVTKVDIIISEWMGYFL 202 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~Iv~~~~~~~l 202 (379)
+|+|+|||+|.++..+++.+..+++++|.++ ++..+++.....+. .+++++..|+.+... ..+++|+|++..+.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999885567999999999 99988864443333 569999999988764 34789999987653331
Q ss_pred CChhhHHHHHHHHHhcccCCEEEEec
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
......++..+.+.|+|||.++..
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 467789999999999999999854
No 139
>PHA03411 putative methyltransferase; Provisional
Probab=99.20 E-value=1.3e-10 Score=105.68 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+.+|||+|||+|.+++.+++. +..+|+++|+++ |++.++++. .+++++++|+.++... .+||+|+++++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~-~kFDlIIsNPP- 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESN-EKFDVVISNPP- 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhccc-CCCcEEEEcCC-
Confidence 4568999999999999988774 346999999999 999998763 2588999999987644 78999999975
Q ss_pred cccCChhh------------------HHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENM------------------LNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~------------------~~~~l~~~~~~LkpgG~li 226 (379)
++...... +..++.....+|+|+|.++
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 33322221 2345566667788887654
No 140
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.20 E-value=1.7e-10 Score=108.49 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC----CCcEEEEEcceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF----SNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+ |++.|++++...+. ..++++...|+.++ +++||+|+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3678999999999999999999865 999999999 99999999876522 13578888887654 378999998
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+..++.. .....++..+.+ +.+||.++
T Consensus 219 ~~vL~H~p~-~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQ-DKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCH-HHHHHHHHHHHh-hcCCEEEE
Confidence 543222221 233456666664 46777665
No 141
>PRK00811 spermidine synthase; Provisional
Probab=99.20 E-value=1.3e-10 Score=108.20 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C--CCcEEEEEcceeecc-CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F--SNVITVLKGKIEEIE-LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~-~~~~~~D~I 193 (379)
..+++||+||||+|.++..+++. +..+|++||+++ +++.|++.+...+ . ..+++++.+|+..+. ...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999886 678999999999 9999999886532 2 367999999988753 234789999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEecC
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+++.......... ....+++.+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9975432211111 12577888999999999998543
No 142
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.19 E-value=7.5e-11 Score=102.41 Aligned_cols=104 Identities=29% Similarity=0.370 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C--CCCceeEEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L--PVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~~~D~Iv~ 195 (379)
.+|.+|||+.||+|.+++.+...|+++|+.||.+. .+..+++|++..++.+++++++.|+...- . ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 58899999999999999999999999999999999 99999999999999888999999975432 1 3589999999
Q ss_pred ecCccccCChhh-HHHHHHHHH--hcccCCEEEEec
Q 016992 196 EWMGYFLLFENM-LNTVLYARD--KWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~-~~~~l~~~~--~~LkpgG~lip~ 228 (379)
+|+ |.. .. ...++..+. .+|+++|.++..
T Consensus 121 DPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 121 DPP-YAK---GLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp --S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred CCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 975 443 33 366777665 799999999843
No 143
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.18 E-value=1.3e-10 Score=101.79 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=73.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--------C
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (379)
.....++.+|||+|||+|.++..+++. +..+|+++|+++ + .. .++.++++|+.+.. +
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence 345678999999999999999988874 446899999999 5 12 34788988987643 3
Q ss_pred CCCceeEEEEecCccc-----cCC---hhhHHHHHHHHHhcccCCEEEEe
Q 016992 186 PVTKVDIIISEWMGYF-----LLF---ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~-----l~~---~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.++||+|+++...++ +.+ ......++..+.++|+|||.++.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 4468999998642211 111 11246889999999999999884
No 144
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.18 E-value=2.4e-10 Score=108.07 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc---------CCCCcEEEEEcceeecc----CC-
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN---------GFSNVITVLKGKIEEIE----LP- 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~---------~~~~~i~~~~~d~~~~~----~~- 186 (379)
++.+|||||||-|+-..-..+.+..+++|+|++. .++.|+++.... ...-...++.+|..... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7889999999999888888888889999999999 999999998321 11123677888776432 22
Q ss_pred -CCceeEEEEec-CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 -VTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 -~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+||+|-|-. +.|.+..+.....+|.++...|+|||+||
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 25999999965 56666778888899999999999999998
No 145
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.17 E-value=2.4e-10 Score=106.47 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=98.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeeccCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEIELP 186 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~ 186 (379)
.+.+++.......+|..|||--||||.+.+.+.-.|+ +++|+|++. |+.-|+.|+...++.+ ..+... |+..++++
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~ 261 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLR 261 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCC
Confidence 4455666667789999999999999999999999987 999999999 9999999999998865 555555 99999998
Q ss_pred CCceeEEEEecCccccCC-------hhhHHHHHHHHHhcccCCEEEEe
Q 016992 187 VTKVDIIISEWMGYFLLF-------ENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..++|.|+++++ |+-.. +..+..+++.+.++||+||++++
T Consensus 262 ~~~vdaIatDPP-YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 262 DNSVDAIATDPP-YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred CCccceEEecCC-CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 677999999974 65433 24467889999999999999884
No 146
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=105.72 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=92.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC-----CcEEEEEcceee
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS-----NVITVLKGKIEE 182 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~ 182 (379)
.|.+.++-..-..++..++|+|||-|+-++-.-++|.+.++|+|+.+ .++.|+++.+...-. -.+.|+.+|...
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 44444443344578889999999999999999899999999999999 999999988653211 137899998764
Q ss_pred c------cCCCCceeEEEEec-CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 183 I------ELPVTKVDIIISEW-MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 183 ~------~~~~~~~D~Iv~~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. ++++.+||+|-|.. +.|.+..+.....+|.++.+.|+|||++|-
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 3 23456699999864 445556677788999999999999999983
No 147
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.16 E-value=2.2e-10 Score=101.12 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=92.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-cceee
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEE 182 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~ 182 (379)
.-.|...+.+ ....++||+||++.|..++.+|. .+ ..++++||.++ +++.|++++++.|+.++|.++. +|+.+
T Consensus 47 ~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~ 123 (219)
T COG4122 47 TGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD 123 (219)
T ss_pred HHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence 3345554543 35778999999999999999998 45 57999999999 9999999999999999899999 58765
Q ss_pred ccC--CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 183 IEL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 183 ~~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
.-. ..++||+|+.+.- ....+.++..+.++|+|||.++....
T Consensus 124 ~l~~~~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 124 VLSRLLDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHhccCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 432 3589999997641 25568899999999999999995543
No 148
>PLN02476 O-methyltransferase
Probab=99.16 E-value=2.5e-10 Score=104.74 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C----CCCce
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L----PVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~~~ 190 (379)
..+.++|||||+|+|..++.+|+. + .++|+++|.++ .++.|+++++++|+.++|+++.+|+.+.- + ..++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 356789999999999999999983 3 46899999999 99999999999999989999999987642 1 13689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
|+|+.+.- ......++..+.++|+|||.++....
T Consensus 196 D~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99997652 25567888888999999999986544
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.15 E-value=2.7e-10 Score=100.51 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=89.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
.+...+.+. ...++||+|||++|..++.+|+. + .++|+.+|.++ ..+.|+++++..|+.++|+++.+|+.+.-
T Consensus 35 ~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 35 QLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 344444432 45679999999999999999984 3 46999999999 99999999999999999999999997642
Q ss_pred -----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 185 -----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 185 -----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
.+.++||+|+.+.- .......+..+.++|+|||.++....-
T Consensus 112 ~l~~~~~~~~fD~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHTTTTTSEEEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHHhccCCCceeEEEEccc------ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 11258999998752 245667888888999999999955433
No 150
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.14 E-value=7.4e-10 Score=96.07 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=86.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcC-CCE---------EEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAG-AAH---------VYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g-~~~---------v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
....++.......++..|||-.||+|.+.+.++..+ ... ++|+|+++ +++.|++|+...++.+.|.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 444556666677889999999999999999988742 223 89999999 9999999999999988899999
Q ss_pred cceeeccCCCCceeEEEEecCccccCCh------hhHHHHHHHHHhcccCCEEEE
Q 016992 178 GKIEEIELPVTKVDIIISEWMGYFLLFE------NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~~~------~~~~~~l~~~~~~LkpgG~li 226 (379)
.|+.++++..+.+|+||++++ |+.... .....+++++.++|++..+++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred cchhhcccccCCCCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999966689999999974 654321 223567788889999955554
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.13 E-value=6.4e-10 Score=110.01 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.++.+.+.+.......++.+|||+|||+|.+++.+++. +.+|+|+|+++ +++.|++++..+++ ++++++++|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHH
Confidence 34444555555555567789999999999999999986 45999999999 99999999999998 46999999997641
Q ss_pred ----CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ----LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ----~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....+||+|+.+++-.++ ...+++.+.+ ++|++.++.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~-----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC-----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC-----CHHHHHHHHh-cCCCEEEEE
Confidence 223579999998764332 2455555544 789887653
No 152
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.13 E-value=1.4e-11 Score=106.82 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=89.2
Q ss_pred hhhhhccCcchhhHHhhcCHH--HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHH
Q 016992 85 DYYFDSYSHFGIHEEMLKDVV--RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAK 161 (379)
Q Consensus 85 ~~y~~~~~~~~~~~~~l~d~~--r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~ 161 (379)
+..|+.|++.-. .+|-+.. ........+.......+=+++||+|||||..+..+... +.+++|||+|. |++.|.
T Consensus 88 e~LFD~~Ae~Fd--~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~ 164 (287)
T COG4976 88 ETLFDQYAERFD--HILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAH 164 (287)
T ss_pred HHHHHHHHHHHH--HHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHH
Confidence 456777765221 2222221 22233333333344444579999999999999988776 56999999999 999997
Q ss_pred HHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 162 QIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 162 ~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
++--. + ++.+.++..+. ...++||+|++.-+ +.+.+.+..++-.....|+|||.|.++.-
T Consensus 165 eKg~Y----D--~L~~Aea~~Fl~~~~~er~DLi~AaDV---l~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 165 EKGLY----D--TLYVAEAVLFLEDLTQERFDLIVAADV---LPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred hccch----H--HHHHHHHHHHhhhccCCcccchhhhhH---HHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 65211 1 23444544332 33589999997433 44558899999999999999999987643
No 153
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.11 E-value=7.9e-10 Score=107.04 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (379)
.++.+|||+|||+|.+++.++..+ .+|+|||+++ +++.|+++++.+++. +++++++|+.++... ..+||+|+.+++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 456799999999999999999875 5999999999 999999999999984 799999999775321 246999999986
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-. +....++..+.+ ++|++.++
T Consensus 310 r~-----G~~~~~l~~l~~-~~p~~ivy 331 (374)
T TIGR02085 310 RR-----GIGKELCDYLSQ-MAPKFILY 331 (374)
T ss_pred CC-----CCcHHHHHHHHh-cCCCeEEE
Confidence 33 223455555543 78988776
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.10 E-value=5.7e-10 Score=97.83 Aligned_cols=99 Identities=31% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+|.+|+|+.||-|.+++.+|+ ...+.|+|+|+++ .++.++++++.|++.++|.++++|+.++.. ...+|.|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 57899999999999999999999 4467999999999 999999999999999999999999998865 48999999876
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... ..++..+..++++||++-
T Consensus 178 p~~~-------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-------HHHHHHHHHHhcCCcEEE
Confidence 5322 256677778899999874
No 155
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.09 E-value=3.8e-10 Score=99.35 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~Iv~~~ 197 (379)
.++.+|||+|||+|.++..+++.+...++|+|+++ +++.+++ .+++++++|+.+ + ++++++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 46789999999999999988875445889999999 9988864 236788889876 3 25567899999865
Q ss_pred CccccCChhhHHHHHHHHHhcccCC
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
+ +.+..++..+++++.+.++++
T Consensus 84 ~---l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 84 T---LQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred H---hHcCcCHHHHHHHHHHhCCeE
Confidence 4 344467788888888877654
No 156
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.09 E-value=1.1e-10 Score=101.66 Aligned_cols=119 Identities=19% Similarity=0.187 Sum_probs=93.4
Q ss_pred HHHHHHHHhc--cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC-CCcEEEEEcceeec
Q 016992 108 KSYQNVIYQN--KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF-SNVITVLKGKIEEI 183 (379)
Q Consensus 108 ~~~~~~i~~~--~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~-~~~i~~~~~d~~~~ 183 (379)
.-|..++.+. ....+|.+|||.|.|-|..++.+++.|+.+|+.+|.++ .++.|.-|-=..++ ...|+++.+|+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3455555543 33457999999999999999999999999999999999 99888644211111 13489999999886
Q ss_pred c--CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 E--LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~--~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. +++++||+|+.+++-+.+-++---..+.++++|+|||||.++
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 4 668999999999987666554445788999999999999998
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.07 E-value=5.6e-10 Score=95.68 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=70.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~D~Iv~~ 196 (379)
+.+|.+|||||||.|.+...+.+....+.+|||+++ .+..+.+ ..+.++++|+.+- .+++++||.||..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 468999999999999999998884455999999999 7776654 2367999999764 2678999999953
Q ss_pred cCccccCChhhHHHHHHHHHhccc
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLV 220 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~Lk 220 (379)
..+.....+..+|.++.|+-|
T Consensus 83 ---qtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 83 ---QTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred ---hHHHhHhHHHHHHHHHHHhcC
Confidence 445555677888888876644
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.06 E-value=6.7e-10 Score=95.84 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=74.1
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcC--CCCcEEEEEcceeecc----CCCCce
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANG--FSNVITVLKGKIEEIE----LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~----~~~~~~ 190 (379)
....++.+|||||||+|..++.+++. +..+|+..|.++.++.++.+++.|+ ...++.+...|..+.. +...+|
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 34578899999999999999999997 7789999998888899999999987 5567888887764411 234689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|++.-+ +..+...+.+++.+.++|+++|.++
T Consensus 121 D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 121 DVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp SEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred CEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 99997433 4456788899999999999998855
No 159
>PLN02366 spermidine synthase
Probab=99.06 E-value=1.4e-09 Score=101.88 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeecc--CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
..+++||+||||.|.++..+++.+ ..+|+.||+++ +++.|++.+... ++ ..+++++.+|+.... .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 456899999999999999999964 57999999999 999999988653 23 258999999986652 224689999
Q ss_pred EEecCccccCCh-hhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 194 ISEWMGYFLLFE-NMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 194 v~~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
+++......... -.-..+++.+.+.|+|||+++......+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 997543211100 0135788899999999999986544433
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.05 E-value=2.6e-09 Score=91.48 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec--cCC-CCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI--ELP-VTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~~D~Iv~~ 196 (379)
..|.+|||+-+|+|.+++.++..|+.+++.||.+. .+..+++|++..++..+++++..|+... ... .+.||+|+.+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 68999999999999999999999999999999999 9999999999999888899999999854 122 1349999999
Q ss_pred cCccccCChhhH--HHHHHH--HHhcccCCEEEEecCC
Q 016992 197 WMGYFLLFENML--NTVLYA--RDKWLVDDGIVLPDKA 230 (379)
Q Consensus 197 ~~~~~l~~~~~~--~~~l~~--~~~~LkpgG~lip~~~ 230 (379)
++ |. .+.+ ...+.. -..+|+|+|.++....
T Consensus 122 PP-y~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PP-YA---KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CC-Cc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 85 43 1333 222222 4578999999986543
No 161
>PRK01581 speE spermidine synthase; Validated
Probab=99.04 E-value=1.7e-09 Score=102.01 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHH--H---HcCC-CCcEEEEEcceeecc-CCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIV--E---ANGF-SNVITVLKGKIEEIE-LPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~--~---~~~~-~~~i~~~~~d~~~~~-~~~~~~D 191 (379)
...++||+||||+|..+..+.+. +..+|++||+++ +++.|++.. . ...+ ..+++++.+|+.++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45579999999999998888886 457999999999 999999621 1 1122 368999999998753 2347899
Q ss_pred EEEEecCccccC--ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 192 IIISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 192 ~Iv~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|+++....... ..-.-..++..+.+.|+|||+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999986422110 0011256888999999999998854
No 162
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=4.7e-10 Score=98.35 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=80.9
Q ss_pred EEEEEcCCCchHHHHHHHc-CC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEe
Q 016992 125 VVLDVGAGTGILSLFCAKA-GA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~-g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (379)
+||+||||.|.....+.+. +. -.|+++|.|+ +++..+++...+. .++.....|+..-. ...+++|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999999988884 22 5899999999 9999998876654 44555555554332 335889999986
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
.+.+.+. .+....++.++.++|||||.+++..+..|.
T Consensus 152 FvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 152 FVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 5544443 345678999999999999999977655544
No 163
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=96.06 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=76.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc----------------------------
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN---------------------------- 167 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~---------------------------- 167 (379)
.....+..+|||||.+|.++..+|+ .|...|.|+|+++ .+..|++++...
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 4456788999999999999999999 6889999999999 999999987431
Q ss_pred ------CCCCcEEEEEcceee-----ccCCCCceeEEEEecC--cccc-CChhhHHHHHHHHHhcccCCEEEE
Q 016992 168 ------GFSNVITVLKGKIEE-----IELPVTKVDIIISEWM--GYFL-LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 168 ------~~~~~i~~~~~d~~~-----~~~~~~~~D~Iv~~~~--~~~l-~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+++++.+...+..- +.+....||+|+|-.+ .-+| .+..-+..++..+.++|.|||++|
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 011122222221110 1123478999998321 1122 234457899999999999999998
No 164
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=4.1e-09 Score=97.66 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeecc-CCCCceeEEEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (379)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|+.+.. ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45599999999999998888864 67999999999 9999999876532 1 246888888876542 11378999999
Q ss_pred ecCccccCChh-hHHHHHHHHHhcccCCEEEEecC
Q 016992 196 EWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 196 ~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+.......... ....+++.+.+.|+|||+++...
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 86422111111 13577889999999999998653
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=3.5e-09 Score=94.50 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH------H-c----CCCCcEEEEEcceeeccCC--
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE------A-N----GFSNVITVLKGKIEEIELP-- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~------~-~----~~~~~i~~~~~d~~~~~~~-- 186 (379)
.++.+||+.|||.|.-+..+|..|. +|+|+|+|+ .++.+.+... . . --..+|+++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4678999999999999999999988 799999999 9988755210 0 0 0014699999999998632
Q ss_pred -CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 -VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++||+|+-... ++.....+.....+.+.++|+|||.++
T Consensus 121 ~~~~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 121 NLPVFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred ccCCcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 258999987543 334456777899999999999999987
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.00 E-value=3.3e-09 Score=99.58 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEE-cceeecc----CCCCceeEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLK-GKIEEIE----LPVTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~~----~~~~~~D~I 193 (379)
++.+|||||||+|.+...++. ....+++|+|+++ +++.|+++++.+ ++.++|+++. .+...+. .+.++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999977666655 4446999999999 999999999999 7988898864 3333321 234789999
Q ss_pred EEecCccccCC
Q 016992 194 ISEWMGYFLLF 204 (379)
Q Consensus 194 v~~~~~~~l~~ 204 (379)
+|+++ |+-..
T Consensus 194 vcNPP-f~~s~ 203 (321)
T PRK11727 194 LCNPP-FHASA 203 (321)
T ss_pred EeCCC-CcCcc
Confidence 99985 44433
No 167
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=2.5e-09 Score=97.01 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--C-C----CCce
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--L-P----VTKV 190 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-~----~~~~ 190 (379)
.+.++||+||+++|..++.+|+. + .++|+++|.++ ..+.|+++++..|+.++|+++.+++.+.- + + .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45679999999999999999984 3 46999999999 99999999999999999999999987742 1 0 2689
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
|+|+.+.- .......+..+.++|+|||.++....-+
T Consensus 158 D~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 158 DFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred cEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 99997642 2445677788889999999998654443
No 168
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.99 E-value=8.3e-09 Score=89.41 Aligned_cols=94 Identities=26% Similarity=0.333 Sum_probs=79.9
Q ss_pred EEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcccc
Q 016992 125 VVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (379)
+++|||+|.|.-++.+|- .+..+++.+|.+. .+...+..+...+++ +++++++++++ .....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehh----
Confidence 899999999999999888 5667999999999 999999999999995 69999999999 333489999999886
Q ss_pred CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+..++.-+..+|++||.++.
T Consensus 125 ---~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 125 ---APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ---SSHHHHHHHHGGGEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCCEEEE
Confidence 4567888999999999999984
No 169
>PRK03612 spermidine synthase; Provisional
Probab=98.97 E-value=2.2e-09 Score=108.24 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHH--HHH---cCCC-CcEEEEEcceeecc-CCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQI--VEA---NGFS-NVITVLKGKIEEIE-LPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~--~~~---~~~~-~~i~~~~~d~~~~~-~~~~~~D 191 (379)
.++++|||||||+|..+..+++.+. .+|++||+++ +++.++++ +.. ..+. .+++++.+|+.+.. ...++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998754 7999999999 99999983 222 1222 57999999998743 2247899
Q ss_pred EEEEecCccccCCh--hhHHHHHHHHHhcccCCEEEEecCC
Q 016992 192 IIISEWMGYFLLFE--NMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+|++++........ -.-..+++.+.+.|+|||.++.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99998643221100 1124678889999999999986543
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.97 E-value=5e-09 Score=97.72 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=72.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.|.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++...+..++++++++|+.+.++ ..|
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~ 102 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYF 102 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--ccc
Confidence 345555566788999999999999999999874 5899999999 999999999887755689999999988765 468
Q ss_pred eEEEEecCccccC
Q 016992 191 DIIISEWMGYFLL 203 (379)
Q Consensus 191 D~Iv~~~~~~~l~ 203 (379)
|+|+++++ |.+.
T Consensus 103 d~VvaNlP-Y~Is 114 (294)
T PTZ00338 103 DVCVANVP-YQIS 114 (294)
T ss_pred CEEEecCC-cccC
Confidence 99999864 5543
No 171
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.97 E-value=5.8e-09 Score=91.61 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=77.6
Q ss_pred CEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecC
Q 016992 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (379)
..+||||||.|.+.+.+|+ .+...++|||+.. .+..|.+++...++ .|+.++++|+..+- ++++++|-|....+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999998 5678999999999 99999999999898 56999999998732 44589999997643
Q ss_pred ccccCChh-----hHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFEN-----MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~-----~~~~~l~~~~~~LkpgG~lip 227 (379)
+-..-... .-+.++..+.+.|+|||.+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 32211000 126889999999999999873
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.96 E-value=3.1e-09 Score=102.69 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
+.+|||++||+|.+++.++. .++.+|+++|+++ +++.++++++.|++. +++++++|+..+....++||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 46899999999999999987 5667999999999 999999999999985 478999999775321367999999874
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+....+++...+.+++||.++.+
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345667656778999999865
No 173
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.96 E-value=5.7e-10 Score=97.91 Aligned_cols=97 Identities=21% Similarity=0.167 Sum_probs=69.7
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
.++|+|||+|..++.+|.. .++|+|+|+|+ |+++|++.....-.....++...++.++.-.++++|+|+|.-. +
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa---~- 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA---V- 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh---H-
Confidence 8999999999888888887 67999999999 9999987644322211233333344444333699999997432 1
Q ss_pred ChhhHHHHHHHHHhcccCCEEEE
Q 016992 204 FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|.-+++.+.+.+.|+||+.|-++
T Consensus 111 HWFdle~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 111 HWFDLERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred HhhchHHHHHHHHHHcCCCCCEE
Confidence 22467899999999999888444
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.92 E-value=6e-09 Score=95.86 Aligned_cols=85 Identities=24% Similarity=0.362 Sum_probs=69.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
.+.+.......++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.+++++.. . ++++++++|+.+++++ .
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~~--~ 91 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDLP--E 91 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCch--h
Confidence 3344444556788999999999999999999984 5999999999 99999988754 2 4699999999988764 5
Q ss_pred eeEEEEecCcccc
Q 016992 190 VDIIISEWMGYFL 202 (379)
Q Consensus 190 ~D~Iv~~~~~~~l 202 (379)
+|.|+++++ |..
T Consensus 92 ~d~Vv~NlP-y~i 103 (258)
T PRK14896 92 FNKVVSNLP-YQI 103 (258)
T ss_pred ceEEEEcCC-ccc
Confidence 899999865 544
No 175
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.92 E-value=1.2e-08 Score=91.21 Aligned_cols=107 Identities=24% Similarity=0.174 Sum_probs=80.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-c------C----CCCcEEEEEcceeeccC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-N------G----FSNVITVLKGKIEEIEL 185 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-~------~----~~~~i~~~~~d~~~~~~ 185 (379)
....++.+||+.|||.|.-...+|+.|. +|+|+|+|+ +++.+.+.... . + -.++|+++++|+.+++.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 3456778999999999999999999987 999999999 98887432211 0 0 12468999999998875
Q ss_pred CC-CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 186 PV-TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~-~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. ++||+|+=... .+.....+.....+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 42 57999997643 344456788899999999999999954
No 176
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.91 E-value=6.2e-09 Score=90.06 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-eccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Iv~~~~~ 199 (379)
...-|||||||+|..+..+...| ...+|+|+|+ |++.|.+.--+ -.++.+|+- .+++..+.||-+|+-...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 46789999999999999998888 4999999999 99999863221 135666764 467878999999984222
Q ss_pred cccCCh--------hhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFE--------NMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~--------~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+.|. .-+..++..++..|++|+..+.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 223221 1245677788999999999883
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=5.1e-09 Score=97.08 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=67.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
.+.+.....++.+|||+|||+|.++..+++.+. +|+|+|+++ |++.+++++.. .+++++++|+.++++++..+|
T Consensus 33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcCcc
Confidence 344445567888999999999999999999865 999999999 99999887642 469999999999876522258
Q ss_pred EEEEecCcccc
Q 016992 192 IIISEWMGYFL 202 (379)
Q Consensus 192 ~Iv~~~~~~~l 202 (379)
.||++++ |..
T Consensus 108 ~vv~NlP-Y~i 117 (272)
T PRK00274 108 KVVANLP-YNI 117 (272)
T ss_pred eEEEeCC-ccc
Confidence 9999864 544
No 178
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.89 E-value=1.3e-08 Score=97.72 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=77.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
+.+...+.+..... +.+|||+|||+|.+++.+++. +++|+|||+++ +++.|++++..+++. +++++++|+.++...
T Consensus 184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHH
Confidence 34444444433322 347999999999999999886 46999999999 999999999999985 599999999774211
Q ss_pred ----------------CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 ----------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ----------------~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...||+|+.+++-.+ ....+++.+.+ |+++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G-----~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAG-----LDPDTCKLVQA---YERILY 308 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCC-----CcHHHHHHHHc---CCcEEE
Confidence 023799999987433 33455555543 666555
No 179
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.89 E-value=1.4e-08 Score=97.92 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE- 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 184 (379)
++.+.+.+...... .+.+|||++||+|.+++.+++. +++|+|||.++ +++.|++++..+++. +++++++|+.++.
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 44455545443322 2357999999999999988886 56999999999 999999999999984 7999999997742
Q ss_pred -CC--------------CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 -LP--------------VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 -~~--------------~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+. ..+||+|+.+++-. +....++..+.+ |+++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivy 317 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILY 317 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEE
Confidence 10 12589999998743 333455555543 555554
No 180
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5.1e-09 Score=84.57 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=72.4
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDI 192 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~ 192 (379)
|.......+|++++|+|||+|.+++..+-.+...|+|+|+++ +++++.+|+....+. +.++++|+.++.+..+.||.
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~g~fDt 117 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKGGIFDT 117 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccCCeEee
Confidence 444455678999999999999999777777888999999999 999999999998874 79999999998887789999
Q ss_pred EEEecC
Q 016992 193 IISEWM 198 (379)
Q Consensus 193 Iv~~~~ 198 (379)
++.++.
T Consensus 118 aviNpp 123 (185)
T KOG3420|consen 118 AVINPP 123 (185)
T ss_pred EEecCC
Confidence 999864
No 181
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=95.80 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
..+|.+|||+-||-|.+++.+|+.|...|+|+|+++ .++.++++++.|++.+.|..+++|+.++....+.+|-|++..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 356999999999999999999999887799999999 9999999999999998899999999998755578999996543
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.....++....+.+++||++.+
T Consensus 266 -------~~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 266 -------KSAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred -------CcchhhHHHHHHHhhcCcEEEE
Confidence 2334566666788888998873
No 182
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=6e-09 Score=88.79 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=63.0
Q ss_pred EEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEE
Q 016992 149 YAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 149 ~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
+|+|+|+ |++.|+++....+ ...+|+++++|+.++++++++||+|++. +++.+..+...+++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999 9999987765322 2246999999999999888899999974 44555578899999999999999999
Q ss_pred Ee
Q 016992 226 LP 227 (379)
Q Consensus 226 ip 227 (379)
+.
T Consensus 78 ~i 79 (160)
T PLN02232 78 SI 79 (160)
T ss_pred EE
Confidence 74
No 183
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.8e-08 Score=97.20 Aligned_cols=115 Identities=25% Similarity=0.209 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (379)
...++.+...........++.+|||+=||.|.+++.+|+. ..+|+|+|+++ +++.|+++++.|++.+ ++|+.+++++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~ 352 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHH
Confidence 4456666666766677778899999999999999999976 56999999999 9999999999999965 9999999998
Q ss_pred ccCC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 183 IELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 ~~~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... ...+|.|+.+++-.++ -+.+++.+.+ ++|..+++
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvY 393 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVY 393 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEE
Confidence 8644 2578999999876655 2455666654 46666555
No 184
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.83 E-value=1.7e-08 Score=95.29 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=94.8
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCce
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~ 190 (379)
.+.+++|.+|||+++.+|+.+.++|.. +.+.|+|.|.+. .+...+.++.+.|+.+ ..+...|..+++ ++ ++|
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccC-ccc
Confidence 366789999999999999999999983 567999999999 9999999999999954 667777887664 44 489
Q ss_pred eEEEEecCccc--cCChh-----------------hHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYF--LLFEN-----------------MLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~--l~~~~-----------------~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|-|+.+.+|++ +.... ...++|.....++++||+|++++|++..
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 99999988887 32211 1246777778999999999999998754
No 185
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.82 E-value=1.4e-08 Score=90.95 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHH-HHHHHHHcCCCCcE-EEEEcceeecc--
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANM-AKQIVEANGFSNVI-TVLKGKIEEIE-- 184 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i-~~~~~d~~~~~-- 184 (379)
+..++.......++++|||+|||||.++..+++.|+++|+|||+++ |+.. .++. .++ .+...|+..+.
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHh
Confidence 3334443333468889999999999999999999999999999999 7765 2221 122 23333444322
Q ss_pred ---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 ---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+...+|++++. +..++..+.+.|+| |.++
T Consensus 136 ~~~~d~~~~DvsfiS-----------~~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 136 DIFPDFATFDVSFIS-----------LISILPELDLLLNP-NDLT 168 (228)
T ss_pred HcCCCceeeeEEEee-----------hHhHHHHHHHHhCc-CeEE
Confidence 111345555532 23357778888999 7766
No 186
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=88.83 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=82.2
Q ss_pred CEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecC
Q 016992 124 KVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWM 198 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~ 198 (379)
..+||||||.|.+...+|+ .+...++|||+.. .+..|.+.+.+.++. |+.+++.|+..+. +++++.|-|....+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999999998 5678999999999 999999999999985 7999999998764 34458999987543
Q ss_pred cccc--CChh---hHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFL--LFEN---MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l--~~~~---~~~~~l~~~~~~LkpgG~lip 227 (379)
+-.. .|.. .-+.+++.+.+.|+|||.|.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 2211 1111 126889999999999999974
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.79 E-value=9.7e-08 Score=77.71 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=72.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-C
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-V 187 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~-~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~ 187 (379)
.+.|..+....++.+|||||||+|. ++..+++.|. .|+|+|+++ .++.++++ .+.++.+|+.+..+. -
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHH
Confidence 3445554444567899999999996 8999998876 999999999 98888764 268899999876644 4
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+|+|.+--+ ...+...+-++.+.+.-.-.+.
T Consensus 76 ~~a~liysirp------p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 76 KNAKLIYSIRP------PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred hcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEE
Confidence 67999998422 1445555555556555444444
No 188
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.77 E-value=5.9e-08 Score=93.16 Aligned_cols=95 Identities=25% Similarity=0.230 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
-++.+.+.+.......++ .|||+-||.|.+++.+|+. +++|+|||.++ +++.|++++..|++ ++++|++++++++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchh
Confidence 355555656665665555 8999999999999999987 46999999999 99999999999999 46999998876542
Q ss_pred C----------------CCCceeEEEEecCccccC
Q 016992 185 L----------------PVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 185 ~----------------~~~~~D~Iv~~~~~~~l~ 203 (379)
. ....+|+|+.+|+-.++.
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 1 123689999999876653
No 189
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.74 E-value=3.1e-08 Score=83.61 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCc-eeEEEEecCc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTK-VDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-~D~Iv~~~~~ 199 (379)
.+|+|+.||.|+.++.+|+. ..+|+|||+++ .++.|+.|++-.|+.++|.++++|+.++.. .... +|+|+++++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 37999999999999999998 45999999999 999999999999998999999999988642 2122 8999998753
No 190
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.74 E-value=2.2e-07 Score=84.70 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=80.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
..+..........+|+|||+|+|.++..+++ .+..+++..|.-..++.+++ .++|+++.+|+. -++| . +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P-~-~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP-V-A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS-S-E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc-c-c
Confidence 3444455666778999999999999999998 57779999999558888877 378999999998 5566 4 9
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC--EEEEe
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD--GIVLP 227 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg--G~lip 227 (379)
|+++...+.+.. .......+|+++++.|+|| |+|+.
T Consensus 160 D~~~l~~vLh~~-~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 160 DVYLLRHVLHDW-SDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred cceeeehhhhhc-chHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 999976553332 2455679999999999999 99883
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.74 E-value=1.3e-07 Score=86.84 Aligned_cols=81 Identities=22% Similarity=0.403 Sum_probs=65.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCce
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKV 190 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 190 (379)
+.+.+.....++.+|||+|||+|.++..+++.+. .|+++|+++ +++.+++++.. ..+++++++|+.+++++ .+
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--~~ 92 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--DF 92 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--Hc
Confidence 3344445567889999999999999999999864 799999999 99999887643 25699999999988764 46
Q ss_pred e---EEEEecC
Q 016992 191 D---IIISEWM 198 (379)
Q Consensus 191 D---~Iv~~~~ 198 (379)
| +|++++.
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 6 8888754
No 192
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.73 E-value=5.6e-08 Score=86.82 Aligned_cols=87 Identities=31% Similarity=0.366 Sum_probs=75.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 187 (379)
.....|.......++..||++|.|||.++..+.+.|. +|+|+|+++ |+....++++....+++.+++++|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4455577778889999999999999999999999854 999999999 9999999998777778999999999988764
Q ss_pred CceeEEEEecC
Q 016992 188 TKVDIIISEWM 198 (379)
Q Consensus 188 ~~~D~Iv~~~~ 198 (379)
.||++|++.+
T Consensus 123 -~fd~cVsNlP 132 (315)
T KOG0820|consen 123 -RFDGCVSNLP 132 (315)
T ss_pred -ccceeeccCC
Confidence 7999999853
No 193
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.7e-07 Score=88.82 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC------C----------------------------------
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA------A---------------------------------- 146 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~------~---------------------------------- 146 (379)
.+.+..+|.......++..++|--||+|.+.+.+|..+. .
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 456667777778888888999999999999999988642 0
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCC--hhhHH----HHHHHHHhcc
Q 016992 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLF--ENMLN----TVLYARDKWL 219 (379)
Q Consensus 147 ~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~--~~~~~----~~l~~~~~~L 219 (379)
.++|+|+++ +++.|+.|+...|+.+.|+|.++|+..+..+.+.+|+|||+++ |+..- +..+. .+.+.+.+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHh
Confidence 378999999 9999999999999999999999999998765578999999974 66532 22233 3344455666
Q ss_pred cCCEEEEec
Q 016992 220 VDDGIVLPD 228 (379)
Q Consensus 220 kpgG~lip~ 228 (379)
+--+..++.
T Consensus 335 ~~ws~~v~t 343 (381)
T COG0116 335 AGWSRYVFT 343 (381)
T ss_pred cCCceEEEE
Confidence 655666643
No 194
>PLN02823 spermine synthase
Probab=98.72 E-value=6.8e-08 Score=91.62 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeecc-CCCCceeEEEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIE-LPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~-~~~~~~D~Iv~ 195 (379)
..++||.||+|.|.++..+.+. +..+|+.||+++ +++.|++.+..++ + ..+++++.+|+...- ...++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999988885 567999999999 9999999876432 2 367999999998753 22478999999
Q ss_pred ecCccccCChh---hHHHHHH-HHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFEN---MLNTVLY-ARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~---~~~~~l~-~~~~~LkpgG~lip~ 228 (379)
+.....-.... .-..+++ .+.+.|+|||+++..
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 85321100000 1235666 788999999998843
No 195
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=9.5e-08 Score=84.26 Aligned_cols=95 Identities=24% Similarity=0.291 Sum_probs=82.0
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCc-eeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTK-VDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~D~Iv~~~~~ 199 (379)
+.+++|||+|.|.-++.+|- .+..+|+-+|... .+...++.....+++ +++++++.++++... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-KKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-cccCcEEEeehc-
Confidence 68999999999999999885 4556799999999 999999999999994 699999999998643 23 999999876
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+..+..-+..++|+||.++
T Consensus 145 ------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 ------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ------cchHHHHHHHHHhcccCCcch
Confidence 456788888899999999876
No 196
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.72 E-value=2.9e-08 Score=86.84 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
...++||+|||.|..+..+.-.-+.+|-.||..+ +++.|++.+... .....++.+.-++++..+..+||+|.+.|+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 3468999999999999876553368999999999 999999766542 12446888888888876567999999999755
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|. ..++-.+|..+...|+|+|.|+.
T Consensus 134 hLT-D~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 134 HLT-DEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhCcCCcEEEE
Confidence 554 46777999999999999999883
No 197
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.70 E-value=8.3e-08 Score=92.34 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecC
Q 016992 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWM 198 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~ 198 (379)
+.+|||+.||+|..++.++.. |+.+|+++|+++ +++.+++|++.|++. +++++++|+..+... ..+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 458999999999999999985 778999999999 999999999999885 589999999876321 257999998873
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+....+++.+.+.+++||.+...
T Consensus 124 -------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -------CCcHHHHHHHHHhcccCCEEEEE
Confidence 22346778888889999998754
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.6e-07 Score=84.94 Aligned_cols=88 Identities=20% Similarity=0.308 Sum_probs=72.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC-
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT- 188 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~- 188 (379)
.+.|.......++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.... .++++++++|+...+++.-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~---~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP---YDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc---ccceEEEeCchhcCcchhhc
Confidence 44566666777889999999999999999999855 899999999 99999888752 2679999999999988722
Q ss_pred ceeEEEEecCccccC
Q 016992 189 KVDIIISEWMGYFLL 203 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~ 203 (379)
.++.||++.+ |.+.
T Consensus 95 ~~~~vVaNlP-Y~Is 108 (259)
T COG0030 95 QPYKVVANLP-YNIS 108 (259)
T ss_pred CCCEEEEcCC-Cccc
Confidence 7899999964 6553
No 199
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=8.1e-08 Score=81.86 Aligned_cols=106 Identities=23% Similarity=0.342 Sum_probs=82.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
..+.|..+.....|++|||+|+|+|..++.+++.|++.|++.|+.+ ....++-|++.||.. |.+...|... ++.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~~ 141 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CCc
Confidence 3455666677788999999999999999999999999999999999 999999999999974 8888888766 337
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 224 (379)
.||+|+..-+ +.+...-.+++. +.+.|+..|.
T Consensus 142 ~~Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 142 AFDLLLAGDL---FYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred ceeEEEeece---ecCchHHHHHHH-HHHHHHhCCC
Confidence 8999996433 333345556666 4444554454
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.65 E-value=2.1e-07 Score=85.90 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=86.7
Q ss_pred CEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcC--C-CCcEEEEEcceeeccCC-CCceeEEEEec
Q 016992 124 KVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANG--F-SNVITVLKGKIEEIELP-VTKVDIIISEW 197 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~ 197 (379)
++||-||-|.|..+..+.+. +..+++.||+++ +++.|++.+.... . ..+++++.+|..++--. .++||+|+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999996 468999999999 9999999987543 2 37899999998876432 24899999976
Q ss_pred CccccCChhh-HHHHHHHHHhcccCCEEEEecCCceEEE
Q 016992 198 MGYFLLFENM-LNTVLYARDKWLVDDGIVLPDKASLYLT 235 (379)
Q Consensus 198 ~~~~l~~~~~-~~~~l~~~~~~LkpgG~lip~~~~~~~~ 235 (379)
....-..+.. -..+++.+.+.|+++|+++....+.+..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5431111111 2688899999999999999765555444
No 201
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.64 E-value=6.5e-07 Score=81.31 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-C--CCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-L--PVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~--~~~~~D~I 193 (379)
...-+||||.||.|...+.+.. .+ ..+|...|.|+ .++..++.++..|+.+.++|.++|+.+.. + -....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4556999999999988777666 43 36999999999 99999999999999887799999997753 1 13567888
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+...+...+.....+...+..+...+.|||++|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 87655333333355677899999999999999954
No 202
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.63 E-value=1.2e-07 Score=83.07 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCc----hHHHHHHHc---CC---CEEEEEecHH-HHHHHHHHHH--------------Hc---------
Q 016992 122 KDKVVLDVGAGTG----ILSLFCAKA---GA---AHVYAVECSQ-MANMAKQIVE--------------AN--------- 167 (379)
Q Consensus 122 ~~~~VLDlGcG~G----~~~~~la~~---g~---~~v~~vD~s~-~~~~a~~~~~--------------~~--------- 167 (379)
+.-+|+.+||+|| .+++.+.+. .. -+|+|.|+|+ +++.|++-.- +.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 566666662 12 3899999999 9999876430 00
Q ss_pred ----CCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 168 ----GFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 168 ----~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.+.++|+|.+.|+.+...+.+.||+|+|..+.-++ .......+++.+.+.|+|||.|+.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 11256899999998833335899999997653333 446668999999999999999984
No 203
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.63 E-value=2.9e-07 Score=82.54 Aligned_cols=103 Identities=30% Similarity=0.300 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
...++||||+|.|..+..++.. ..+|++.|.|. |....++ .|+ +++ +..++.-.+.+||+|.|-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~----~vl--~~~~w~~~~~~fDvIscLN--- 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF----TVL--DIDDWQQTDFKFDVISCLN--- 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC----eEE--ehhhhhccCCceEEEeehh---
Confidence 4568999999999999999886 56999999999 8655543 443 333 2223332346899999843
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEecCCceEEEEee
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPDKASLYLTAIE 238 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~ 238 (379)
.|.....+..+|+.+++.|+|+|+++....-.|..-++
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE 197 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVE 197 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEE
Confidence 35555778899999999999999998543333333333
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=3e-07 Score=96.08 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCCchHHHHHHHcC-----------------------------------------
Q 016992 107 TKSYQNVIYQNKFL-FKDKVVLDVGAGTGILSLFCAKAG----------------------------------------- 144 (379)
Q Consensus 107 ~~~~~~~i~~~~~~-~~~~~VLDlGcG~G~~~~~la~~g----------------------------------------- 144 (379)
.+.+..+|...... .++..++|.+||+|.+.+.+|...
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555566655554 567899999999999999887620
Q ss_pred --CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCccccCC--hhhHHHHHHHHHh
Q 016992 145 --AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK 217 (379)
Q Consensus 145 --~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~ 217 (379)
..+++|+|+++ +++.|++|+..+|+.+.|.+.++|+.+++.+ .+++|+|+++++ |+... ...+..+...+..
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP-Yg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP-YGERLGEEPALIALYSQLGR 332 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC-CcCccCchHHHHHHHHHHHH
Confidence 12699999999 9999999999999988899999999988654 247999999974 54332 2344444444444
Q ss_pred ccc---CCEEEE
Q 016992 218 WLV---DDGIVL 226 (379)
Q Consensus 218 ~Lk---pgG~li 226 (379)
.|+ +|+.++
T Consensus 333 ~lk~~~~g~~~~ 344 (702)
T PRK11783 333 RLKQQFGGWNAA 344 (702)
T ss_pred HHHHhCCCCeEE
Confidence 443 776553
No 205
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.62 E-value=2.9e-07 Score=76.44 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=84.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--- 184 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 184 (379)
.+.+........|.-||++|.|||.++..+.+.|. ..++++|.|+ .+....+... .+.++.+|+.++.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 34455556777889999999999999999998764 6899999999 8888877653 3679999998876
Q ss_pred --CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 --LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+..||.|+|..+ ....-....-++++.+...|.+||.++-
T Consensus 111 ~e~~gq~~D~viS~lP-ll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 111 GEHKGQFFDSVISGLP-LLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhcCCCeeeeEEeccc-cccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 33578999999643 1111123345788888899999999983
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.4e-07 Score=81.30 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc-CC--CEEEEEecHH-HHHHHHHHHHHcC--------C-CCcEEEEEcceeeccCC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA-GA--AHVYAVECSQ-MANMAKQIVEANG--------F-SNVITVLKGKIEEIELP 186 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~-g~--~~v~~vD~s~-~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~~~~ 186 (379)
+.||.+.||+|+|+|.++.++++. |. ..++|||..+ .++.+++++...- + ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 689999999999999999999973 43 2449999999 9999999997643 1 14588999999988777
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+||.|.+.. ....+.+++...|+|||.++
T Consensus 160 ~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 160 QAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 78999999642 12344555667788888876
No 207
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.61 E-value=2.4e-07 Score=80.73 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--------CCceeE
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------VTKVDI 192 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~D~ 192 (379)
+.+|||||||||.-+.++|+ .+.-...-.|.++ .....+..+...++++-..-+..|+..-+.+ .+.||.
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 33699999999999999988 5666788889999 8778888888888865555666777665322 358999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|..|.+. ........++....++|++||.|+
T Consensus 106 i~~~N~lHI-~p~~~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 106 IFCINMLHI-SPWSAVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred eeehhHHHh-cCHHHHHHHHHHHHHhCCCCCEEE
Confidence 999776554 344566889999999999999988
No 208
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=6.4e-07 Score=75.46 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred CCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
...+||||||+|..+.++++. +...+.++|+++ +++...+.+..|+. ++..++.|...--.+ +++|+++.++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~-~~VDvLvfNPP- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRN-ESVDVLVFNPP- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhcc-CCccEEEECCC-
Confidence 678999999999999999883 456889999999 99999999998886 388899888765444 89999998863
Q ss_pred cccCChh-------------------hHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFEN-------------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~-------------------~~~~~l~~~~~~LkpgG~li 226 (379)
|....+. ...+++..+..+|.|.|+++
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 4432211 14677788888999999987
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.58 E-value=3.7e-07 Score=83.22 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCC---CCcEEEEEcceeeccCC-CC-ceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGF---SNVITVLKGKIEEIELP-VT-KVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~~-~~-~~D~I 193 (379)
.+.++||-||-|.|..+..+.+.+ ..+|++||+++ +++.|++.+..... ..+++++.+|+..+--. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999999864 67999999999 99999998876432 26899999999875322 24 89999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+.......... .-..+++.+.+.|+|||+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 9986542111111 126888999999999999983
No 210
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.57 E-value=8.1e-08 Score=85.09 Aligned_cols=84 Identities=17% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
.....|.|+|||-+-++. .. ...|+..|+.+ -+-.++.+|+.++|++++++|++|+-+
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDvaV~CL--- 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDVAVFCL--- 236 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccEEEeeH---
Confidence 455689999999987755 22 34899999854 224678899999999999999999632
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|.+ .++..++.++.|+|++||.+..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEE
Confidence 2332 5678999999999999998873
No 211
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=6.8e-07 Score=79.96 Aligned_cols=105 Identities=24% Similarity=0.266 Sum_probs=85.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~ 188 (379)
|...+...||.+||+-|+|+|.++..+++. +.++++..|... ..+.|.+-++..|+++++++.+.|++..-+. ..
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 455567899999999999999999999994 558999999999 9999999999999999999999999886554 47
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCE-EEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDG-IVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~li 226 (379)
.+|.|+.+++ .+-..+-.++..||.+| +++
T Consensus 177 ~aDaVFLDlP--------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 177 KADAVFLDLP--------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccceEEEcCC--------ChhhhhhhhHHHhhhcCceEE
Confidence 8999997753 23344444556787766 444
No 212
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=6.4e-07 Score=78.55 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCce
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~ 190 (379)
...++++||||.=||..++..|.. ..++|+++|+++ ..+++.+..+..|...+|+++++++.+.- .+.+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 356789999999999888888874 347999999999 99999999999999999999999986631 235789
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
|+++.+.- ..........+.++||+||+|+.....++.
T Consensus 151 DfaFvDad------K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDAD------KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEccc------hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 99996531 123346777888999999999977655554
No 213
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.54 E-value=2.5e-07 Score=85.76 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCc----hHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHH------------------H-----cC-
Q 016992 123 DKVVLDVGAGTG----ILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVE------------------A-----NG- 168 (379)
Q Consensus 123 ~~~VLDlGcG~G----~~~~~la~~-g----~~~v~~vD~s~-~~~~a~~~~~------------------~-----~~- 168 (379)
.-+|+..||+|| .+++.+.+. + .-+|+|+|+|. +++.|++-.- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 566666663 2 24799999999 9999987631 0 01
Q ss_pred ------CCCcEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 169 ------FSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 169 ------~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+...|+|.+.|+.+.+++ .+.||+|+|..+..++ .......++..+.+.|+|||+|+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 235678888888775432 4789999996543322 3456789999999999999998843
No 214
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=6.9e-07 Score=78.86 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=78.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeeccCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEIELP 186 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~ 186 (379)
.+..++....-..+|++|||+|+.||+++..+.+.|+++|+|||..- .+.+--++ ..+ +.+...++..+...
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 45555666666789999999999999999999999999999999987 44442211 123 44455566655422
Q ss_pred --CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 --VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+..|+++++. +|+ .+..+|..+..+++|+|.++
T Consensus 140 ~~~~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 140 DFTEKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred HcccCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEE
Confidence 25789999985 333 46788899999999999887
No 215
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.49 E-value=1e-06 Score=77.82 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=66.3
Q ss_pred HhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEcceeecc
Q 016992 115 YQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEIE 184 (379)
Q Consensus 115 ~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~~ 184 (379)
.+...+.++.+.+|||||.|...+.+|. .+..+++|||+.+ ..+.|+.... ..|. ..++++.++|+.+.+
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 3345577899999999999999888776 6788899999999 8877765443 2333 256888999886643
Q ss_pred CC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 185 LP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 185 ~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. -...|+|+++..+ +. +.+...|......||+|.++|
T Consensus 115 ~~~~~~s~AdvVf~Nn~~---F~-~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTC---FD-PDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHGHC-SEEEE--TT---T--HHHHHHHHHHHTTS-TT-EEE
T ss_pred hHhhhhcCCCEEEEeccc---cC-HHHHHHHHHHHhcCCCCCEEE
Confidence 21 1457999987642 22 455555677778899999887
No 216
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.47 E-value=2.6e-07 Score=80.12 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=57.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
.+.++|. ...++..|.|+|||.+.++..+. . ...|+..|+.+ .+ + .++.+|+..+|++++
T Consensus 62 ~iI~~l~---~~~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva----------~n---~--~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 62 VIIEWLK---KRPKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVA----------PN---P--RVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHC---TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--TT
T ss_pred HHHHHHH---hcCCCEEEEECCCchHHHHHhcc-c-CceEEEeeccC----------CC---C--CEEEecCccCcCCCC
Confidence 4444444 23456799999999998885543 2 23799999854 11 2 367789999999999
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++|++|+-+ .|.+ .++..++.+..|+|||||.+.
T Consensus 122 svDv~VfcL---SLMG-Tn~~~fi~EA~RvLK~~G~L~ 155 (219)
T PF05148_consen 122 SVDVAVFCL---SLMG-TNWPDFIREANRVLKPGGILK 155 (219)
T ss_dssp -EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEEEh---hhhC-CCcHHHHHHHHheeccCcEEE
Confidence 999999643 2333 567899999999999999987
No 217
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.47 E-value=7.9e-07 Score=89.39 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.+..+||||||.|.+...+|+ .+...++|+|++. .+..+.+.+...++ .|+.+++.|+..+. ++++++|.|+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 467999999999999999998 4667999999999 88888778888888 46899998876443 5568899999765
Q ss_pred Ccccc--CChh---hHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFL--LFEN---MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l--~~~~---~~~~~l~~~~~~LkpgG~lip 227 (379)
++-.. .|.. .-+.++..+.++|||||.+..
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 43321 1111 126889999999999999873
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=8.4e-07 Score=86.15 Aligned_cols=123 Identities=22% Similarity=0.161 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee
Q 016992 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE 181 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~ 181 (379)
+....+.+...|.+......++.+||++||||.+++.+|+. +++|+|||+++ .++.|+++++.||++ +.+|+++-++
T Consensus 364 Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE 441 (534)
T KOG2187|consen 364 NTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAE 441 (534)
T ss_pred CcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecchh
Confidence 34445667777888888889999999999999999999885 77999999999 999999999999995 5999999777
Q ss_pred eccCC--C---Ccee-EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 182 EIELP--V---TKVD-IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 182 ~~~~~--~---~~~D-~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
++-.. . .+-+ ++|.++.-.++ -..++..++..-++- ++++.+|..+
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR~Gl-----h~~~ik~l~~~~~~~-rlvyvSCn~~ 493 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPRKGL-----HMKVIKALRAYKNPR-RLVYVSCNPH 493 (534)
T ss_pred hccchhcccCCCCCceEEEECCCcccc-----cHHHHHHHHhccCcc-ceEEEEcCHH
Confidence 75311 1 2335 66667654333 234555554433233 3444444444
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.44 E-value=1.6e-06 Score=81.11 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=68.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..+|.++|||||++|+++..+.+.|+ +|+|||..+|..... .. .+|+.+..|......+.+.+|+++|+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~----~~---~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLM----DT---GQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhh----CC---CCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999999988 999999777433321 11 5688988888776543578999999975
Q ss_pred cccCChhhHHHHHHHHHhcccCC
Q 016992 200 YFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
..+..+..-+.++|..|
T Consensus 280 ------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ------cCHHHHHHHHHHHHhcC
Confidence 34567777778888766
No 220
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=1.3e-07 Score=82.28 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
...++|||||-|.+..++...|..+++-+|.|. |++.++.. +.+++ .+....+|-+.+++.+.++|+|++.+-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSls--- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLS--- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhh---
Confidence 457999999999999999888888999999999 99998763 33444 367778898999998999999998743
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++...+++..+..+...|||+|.|+-
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchh
Confidence 44446788888889999999999983
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=98.43 E-value=1.2e-06 Score=80.04 Aligned_cols=102 Identities=20% Similarity=0.069 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--CC-CCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--GF-SNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...++||-||.|.|+.+..+.+.+. +|+-||+++ +++.+++.+... ++ +.+++++.. +.+ ...++||+||++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4558999999999999999999864 999999999 999999966542 12 256777752 211 123789999987
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
.. ..+.+.+.+.+.|+|||.++.+..+.+.
T Consensus 147 s~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 147 QE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 42 1256778899999999999977666554
No 222
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.42 E-value=2.9e-06 Score=77.55 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH----c-----------------------------
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA----N----------------------------- 167 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~----~----------------------------- 167 (379)
...+||--|||.|.++..+|+.|. .+.|.|.|- |+-..+-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 456999999999999999999988 999999999 87665544321 0
Q ss_pred ------CCCCcEEEEEcceeeccCCC---CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 168 ------GFSNVITVLKGKIEEIELPV---TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 168 ------~~~~~i~~~~~d~~~~~~~~---~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
....++....||+.++-.+. ++||+|++ ++|+.....+-..++.+.++|||||..|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT---~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVT---CFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEE---EEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 11245777778887775444 68999995 4677777778899999999999999776
No 223
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.3e-06 Score=76.16 Aligned_cols=98 Identities=26% Similarity=0.262 Sum_probs=68.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CCC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 187 (379)
.-+.++.+|+||||.+|.++..+++. +. ..|+|||+.+|- .+ .+|.++++|++.-+ +..
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~-~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PI-PGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cC-CCceEEeeeccCccHHHHHHHHcCC
Confidence 34567899999999999999999994 43 359999998721 12 33899999998754 234
Q ss_pred CceeEEEEecCccccC--------ChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLL--------FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+|+|++....-. .......++.-...+|+|||.++
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 5579999986531111 11112345555678999999988
No 224
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=1e-06 Score=81.84 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=65.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCC-
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPV- 187 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~- 187 (379)
+.......++..+||++||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .++++++++|+.++. ++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 3444556788899999999999999999953 47999999999 99999988765 368999999998764 221
Q ss_pred -CceeEEEEec
Q 016992 188 -TKVDIIISEW 197 (379)
Q Consensus 188 -~~~D~Iv~~~ 197 (379)
.++|.|++++
T Consensus 88 ~~~vDgIl~DL 98 (296)
T PRK00050 88 LGKVDGILLDL 98 (296)
T ss_pred CCccCEEEECC
Confidence 2799999874
No 225
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.37 E-value=5.4e-07 Score=85.32 Aligned_cols=204 Identities=14% Similarity=0.057 Sum_probs=134.6
Q ss_pred CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc-ccCChhhH--HHHHHHHHhccc
Q 016992 145 AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY-FLLFENML--NTVLYARDKWLV 220 (379)
Q Consensus 145 ~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~-~l~~~~~~--~~~l~~~~~~Lk 220 (379)
..+++-.+.++ .-.+..+++-...+. +++.+..= +..+ .+.|++.++++-. .+.-...+ -.....+...+-
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Kls-n~e~vp~i---~t~~-ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G 463 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLS-NNESVPAI---MTSP-DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHG 463 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhh---hcCC-CCCceeecchhhhhccCchhheeeeeeHHHHHHhcC
Confidence 45677778887 656666666555553 24433321 1233 3558887765310 00000011 012334456788
Q ss_pred CCEEEEecCCceEEEEeecccccccccccccccccccchhhhhhh-----------ccCceEEeeCCCcccCCCeeeEee
Q 016992 221 DDGIVLPDKASLYLTAIEDAEYKDDKIEFWNNVYGFDMSCIKKQA-----------MMEPLVDTVDQNQIVTNCQLLKTM 289 (379)
Q Consensus 221 pgG~lip~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~ls~p~~l~~~ 289 (379)
|+-++.|+.+.+.+.+.+++.++...... ..+.|||++-+.++. -++|+|+| +..++++|..++.|
T Consensus 464 ~~~~V~P~~~~L~Ai~~kF~DL~~I~S~~-G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F 540 (636)
T KOG1501|consen 464 DELRVEPHMGVLKAIPEKFEDLQNIASDV-GTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRF 540 (636)
T ss_pred CceeeccccchhhhhhHHHHHHHhhcccc-cccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEe
Confidence 99999999999999999998888766543 678999999887765 35799999 99999999999999
Q ss_pred eCCCCCCCC-ceEe----------------cCCcEEEecCCCC--------CCCCeeeEEEEcCCceecCCCCEEEEEEE
Q 016992 290 DISKMGPGD-ASFT----------------CHKLMGFSTGPKS--------RATHWKQTVLYLEDVLTICEGEAISGSLT 344 (379)
Q Consensus 290 df~~~~~~~-~~f~----------------~~~~~~lst~P~~--------~~~~W~q~~~~l~~p~~v~~g~~i~~~~~ 344 (379)
+|......+ .... .-+++.||||... +..|.||+||++..- +....++.+.+-
T Consensus 541 ~~~~~V~~Qk~~V~i~~~~sS~A~~mWME~~~~~~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t~--L~~~ksl~~~~~ 618 (636)
T KOG1501|consen 541 PIDGRVSSQKCVVNIDNMSSSNAIPMWMEWEFGGINLSTGLLSISSAGVPEWNKGYKQGVYFPITA--LRNDKSLCLHAL 618 (636)
T ss_pred ccCCccccceeEEEccCCCccccceeeEEeeeCceeecccceeecCCCCcccCccccceeEEEhHH--hCCCceEEEEEE
Confidence 998644332 1111 2258899997642 236889999998543 344458888888
Q ss_pred EeeCCCCCceEEEEEEEEE
Q 016992 345 VAPNKKNPRDVDIMLKYSL 363 (379)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (379)
++...++|.++|.-
T Consensus 619 -----F~~~TGDI~~qF~~ 632 (636)
T KOG1501|consen 619 -----FDKSTGDINFQFGK 632 (636)
T ss_pred -----EcCCCCceEEEecc
Confidence 55566889888853
No 226
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.36 E-value=2.6e-06 Score=80.60 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=74.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCchHHHHHHHc--------CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceee
Q 016992 113 VIYQNKFLFKDKVVLDVGAGTGILSLFCAKA--------GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEE 182 (379)
Q Consensus 113 ~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~--------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~ 182 (379)
.+.......++.+|+|.+||+|.+...+.+. ....++|+|+++ ++..|+-++.-.+... ...+..+|...
T Consensus 37 l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~ 116 (311)
T PF02384_consen 37 LMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLE 116 (311)
T ss_dssp HHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTT
T ss_pred HHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccc
Confidence 3444445677889999999999998887762 456999999999 9999988876665432 24578888755
Q ss_pred ccCC--CCceeEEEEecCccccC--Chh-----------------hHHHHHHHHHhcccCCEEEE
Q 016992 183 IELP--VTKVDIIISEWMGYFLL--FEN-----------------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 ~~~~--~~~~D~Iv~~~~~~~l~--~~~-----------------~~~~~l~~~~~~LkpgG~li 226 (379)
.+.. ..+||+|+++++ ++.. ... .--.++..+.+.|++||++.
T Consensus 117 ~~~~~~~~~~D~ii~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 117 NDKFIKNQKFDVIIGNPP-FGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp SHSCTST--EEEEEEE---CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccccccccccCCCC-ccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 4432 378999999975 3332 100 11246777889999999865
No 227
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.35 E-value=6.4e-07 Score=77.87 Aligned_cols=94 Identities=27% Similarity=0.333 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcC--CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------CC--CCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAG--AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------LP--VTK 189 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g--~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~~--~~~ 189 (379)
++.+||||||++|+++..+.+.+ ..+|+|+|+.++ ... ..+.++++|+.+.. +. .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999976 579999999863 111 34777788876532 11 268
Q ss_pred eeEEEEecCccccCC--------hhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLF--------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+|+........ .......+..+..+|+|||.++
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 999999862221111 0112234445567899999877
No 228
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.29 E-value=4.5e-06 Score=76.42 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=75.3
Q ss_pred CCEEEEEcCCCc----hHHHHHHHcC------CCEEEEEecHH-HHHHHHHHHHH-----cC------------------
Q 016992 123 DKVVLDVGAGTG----ILSLFCAKAG------AAHVYAVECSQ-MANMAKQIVEA-----NG------------------ 168 (379)
Q Consensus 123 ~~~VLDlGcG~G----~~~~~la~~g------~~~v~~vD~s~-~~~~a~~~~~~-----~~------------------ 168 (379)
.-+|+-+||+|| .+++.+.+.+ .-+|+|.|++. +++.|++-+-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 569999999999 6677777743 25899999999 99998754311 11
Q ss_pred -----CCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 169 -----FSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 169 -----~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+...|.|.+.|+..-....+.||+|+|..+.-++ .......++..++..|+|||.|+.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1244677777776655223789999996553333 345667999999999999999983
No 229
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.24 E-value=8.5e-07 Score=86.24 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhccCC--CCC--CEEEEEcCCCchHHHHHHHcCCCEEEEE---ecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 016992 106 RTKSYQNVIYQNKFL--FKD--KVVLDVGAGTGILSLFCAKAGAAHVYAV---ECSQ-MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 106 r~~~~~~~i~~~~~~--~~~--~~VLDlGcG~G~~~~~la~~g~~~v~~v---D~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
....|.+.|.+.+.. ..| .++||+|||+|.++..+...+. .+..+ |..+ .+..|- +.|++.-+.+
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfal----eRGvpa~~~~-- 169 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFAL----ERGVPAMIGV-- 169 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhh----hcCcchhhhh--
Confidence 345666666665544 222 4799999999999999988865 22222 3333 444443 3355432221
Q ss_pred cceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 178 GKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 178 ~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
.-...+++++..||+|.|.-.. ......-..+|-++.|+|+|||+++.+...++
T Consensus 170 ~~s~rLPfp~~~fDmvHcsrc~--i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 170 LGSQRLPFPSNAFDMVHCSRCL--IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hccccccCCccchhhhhccccc--ccchhcccceeehhhhhhccCceEEecCCccc
Confidence 1245788899999999984211 11111123578889999999999997776666
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.24 E-value=1.1e-06 Score=76.30 Aligned_cols=98 Identities=20% Similarity=0.200 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~ 196 (379)
....|+|.-||.|+-++..|..+. .|++||+++ .+..|+.+++-.|++++|+|++||+.++- +....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456899999999999998888866 999999999 99999999999999999999999998753 333457788765
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
+...+ .+-+..-+..+...++|.|
T Consensus 173 ppwgg---p~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 PPWGG---PSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCC---cchhhhhhhhhhhhcchhH
Confidence 43222 2333333333445555554
No 231
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.20 E-value=6.2e-06 Score=76.07 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=67.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC-
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV- 187 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 187 (379)
..+.|.......++..|||+|+|+|.++..+++.+ ++|+++|+++ +++..++.+.. ..+++++.+|+.++....
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHHh
Confidence 34445555556689999999999999999999987 7999999999 99999887652 267999999999887652
Q ss_pred --CceeEEEEecC
Q 016992 188 --TKVDIIISEWM 198 (379)
Q Consensus 188 --~~~D~Iv~~~~ 198 (379)
.....|+++.+
T Consensus 94 ~~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 LKNQPLLVVGNLP 106 (262)
T ss_dssp CSSSEEEEEEEET
T ss_pred hcCCceEEEEEec
Confidence 35678888753
No 232
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.20 E-value=2.6e-05 Score=68.52 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=71.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D 191 (379)
..+.+|.+||-||+++|....+++. .| .+.|||||.|+ .....-..+++. .||-.+-.|+.... .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 4578899999999999999999999 45 67999999999 655444444443 56887888987532 1136899
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+++.. ......-++.++..+||+||.++.
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEE
Confidence 9999852 224566777888899999999873
No 233
>PRK10742 putative methyltransferase; Provisional
Probab=98.15 E-value=1.5e-05 Score=71.60 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHhccCCCCCC--EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc------C--CCCcEEEEEcceee
Q 016992 114 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN------G--FSNVITVLKGKIEE 182 (379)
Q Consensus 114 i~~~~~~~~~~--~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~------~--~~~~i~~~~~d~~~ 182 (379)
|.++..+.+|. +|||+-+|+|..++.++..|+ .|+++|.++ +....++++++. + +..+++++++|+.+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 44455566777 999999999999999999988 599999999 999999988874 2 22579999999877
Q ss_pred ccC-CCCceeEEEEecCc
Q 016992 183 IEL-PVTKVDIIISEWMG 199 (379)
Q Consensus 183 ~~~-~~~~~D~Iv~~~~~ 199 (379)
+-- ....||+|+.++|.
T Consensus 157 ~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHhhCCCCCcEEEECCCC
Confidence 632 12479999999873
No 234
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.13 E-value=4.5e-06 Score=79.79 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
....++..++|+|||-|.....++..+...++|+|.++ -+..+.......++.++..++.+|+...++++..||.+.+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 34567779999999999999999997667999999999 88888888877788777778889999999999999999963
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
....|.+....++.++.++++|||.++.
T Consensus 186 ---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 186 ---EVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ---eecccCCcHHHHHHHHhcccCCCceEEe
Confidence 3355558889999999999999999884
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.13 E-value=2e-05 Score=69.56 Aligned_cols=96 Identities=26% Similarity=0.336 Sum_probs=69.3
Q ss_pred EEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 126 VLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
|.||||--|.+++.+.+.|. .+++++|+++ -++.|++++...|+.++|+++.+|-.+.-.+.+.+|.|+...||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999764 6899999999 999999999999999999999999655423323488888766643
Q ss_pred ChhhHHHHHHHHHhcccCCEEEE
Q 016992 204 FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+..+|.+....++....||
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEE
T ss_pred --HHHHHHHHhhHHHhccCCeEE
Confidence 345677777766666555565
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.08 E-value=2.3e-06 Score=67.47 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=45.1
Q ss_pred EEEcCCCchHHHHHHHc----CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEecCcc
Q 016992 127 LDVGAGTGILSLFCAKA----GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEWMGY 200 (379)
Q Consensus 127 LDlGcG~G~~~~~la~~----g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~~~~ 200 (379)
||+|+..|..+..+++. +..+++++|..+..+.+++.+++.++.+++++++++..+.- ++.+++|+|+.+..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 68999999888887763 22389999998754456666666777788999999987642 22478999998752
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+........+..+.+.|+|||+++...
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 112445667788889999999998653
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.05 E-value=1.8e-05 Score=65.81 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-----cCCCEEEEEecHH-HHHHHHHHHHHcC--CCCcEEEEEcceeeccCCCCcee
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-----AGAAHVYAVECSQ-MANMAKQIVEANG--FSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-----~g~~~v~~vD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
..+...|+|+|||.|.++..++. ....+|++||.++ .++.+.++.+..+ +..++.+..++..+... ....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 35678999999999999999998 4456999999999 9999999998877 54567777776655433 25667
Q ss_pred EEEE
Q 016992 192 IIIS 195 (379)
Q Consensus 192 ~Iv~ 195 (379)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 7775
No 238
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.03 E-value=3.8e-05 Score=66.64 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~Iv~~~ 197 (379)
.+|.+||.+|-|.|+....+.+++..+-+.||.++ .++..+...-.. ..+|.++.+-.++.. ++++.||-|+-+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEeec
Confidence 78899999999999999999888776778899999 888776543221 256888888777653 5578899999765
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. -.+-+++..+.+.+.++|||+|++-+
T Consensus 178 y---~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 178 Y---SELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred h---hhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 3 23336778888899999999999864
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.01 E-value=4e-05 Score=71.03 Aligned_cols=89 Identities=24% Similarity=0.219 Sum_probs=54.7
Q ss_pred HHHHHHHhccCCC-----CCCEEEEEcCCCc-hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcc
Q 016992 109 SYQNVIYQNKFLF-----KDKVVLDVGAGTG-ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGK 179 (379)
Q Consensus 109 ~~~~~i~~~~~~~-----~~~~VLDlGcG~G-~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d 179 (379)
.|..+|...+... ...++||||||.. +..+..++ .| .+++|.|+++ .++.|++++..| ++.++|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 4555555433322 2458999999986 55666666 45 5999999999 999999999999 999999998764
Q ss_pred eeecc-----CCCCceeEEEEecC
Q 016992 180 IEEIE-----LPVTKVDIIISEWM 198 (379)
Q Consensus 180 ~~~~~-----~~~~~~D~Iv~~~~ 198 (379)
-...- .+.+.||+.+|+++
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPP 186 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPP 186 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE---
T ss_pred CccccchhhhcccceeeEEecCCc
Confidence 32211 22478999999985
No 240
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.98 E-value=0.0001 Score=60.98 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=67.4
Q ss_pred EEEEcCCCchHHHHHHHcCC--CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee--ccCCC-CceeEEEEecCc
Q 016992 126 VLDVGAGTGILSLFCAKAGA--AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--IELPV-TKVDIIISEWMG 199 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~-~~~D~Iv~~~~~ 199 (379)
++|+|||+|... .++.... ..++++|.++ ++..++......+. ..+.+...+... +++.. ..||++.+....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999877 4444322 3899999999 88885554433211 116788888776 66664 379999433221
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+ . .. ....+..+.+.|+|+|.++...
T Consensus 130 ~-~--~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 130 H-L--LP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred h-c--CC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 1 1 12 6788999999999999988543
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.94 E-value=2.9e-05 Score=64.49 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=49.6
Q ss_pred EEEEEcCCCchHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee
Q 016992 125 VVLDVGAGTGILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE 182 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (379)
+|||+|||.|.++..+++.+. .+|+++|+++ +.+.++++++.++++ ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999998654 4899999999 999999999999885 48888876654
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.94 E-value=0.00013 Score=67.67 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVT 188 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 188 (379)
..+..........+|||+|||+|.-+..+.. . ...+++++|.|+ |++.++..+....-........ ....-..+..
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR-VLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhh-hhhcccccCC
Confidence 3344444455678999999999976655555 2 356899999999 9999998876543211111111 1111011123
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccC
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (379)
..|+|++..+..-+.. .....+++.+...+.+
T Consensus 102 ~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 102 PDDLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred CCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 4499998655455554 5567778888777766
No 243
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.93 E-value=4.6e-05 Score=77.42 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHcC---------CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAG---------AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g---------~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~ 186 (379)
.+.+|||.|||+|.+...+++.. ...++|+|+++ ++..++.++...+. ..+.+.+.|...... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45689999999999998887631 14789999999 99999999877652 225566665433211 1
Q ss_pred CCceeEEEEecC
Q 016992 187 VTKVDIIISEWM 198 (379)
Q Consensus 187 ~~~~D~Iv~~~~ 198 (379)
.++||+||++|+
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999975
No 244
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=8.6e-05 Score=69.79 Aligned_cols=114 Identities=16% Similarity=-0.042 Sum_probs=82.1
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCC-----CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-------
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGA-----AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------- 184 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~-----~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------- 184 (379)
+.+.+|.+|||+|+.+|..+..+.+... +.|++=|.+. -+...........- .++.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 5678999999999999999988877421 3899999999 88887777755443 34555555554433
Q ss_pred --CCCCceeEEEEecCccccCC---hhh-----------------HHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 --LPVTKVDIIISEWMGYFLLF---ENM-----------------LNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 --~~~~~~D~Iv~~~~~~~l~~---~~~-----------------~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
.....||-|+++.+|++=.. ... --.++....++||+||.+|+++|++
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 12357999999977654210 000 1367777889999999999999986
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.90 E-value=7.5e-05 Score=69.69 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHH--HH-cC--C-CCcEEEEEcceeeccC-CCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIV--EA-NG--F-SNVITVLKGKIEEIEL-PVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~--~~-~~--~-~~~i~~~~~d~~~~~~-~~~~~D 191 (379)
..-.+||-+|.|.|.-+..+.+.+ ..+|+-||+++ |++.++++. .. |+ + +.+++++..|+.++-- ....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 344689999999999999999986 78999999999 999998433 22 21 2 2679999999887642 246899
Q ss_pred EEEEecCccccCChhhH--HHHHHHHHhcccCCEEEEecCCceEEE
Q 016992 192 IIISEWMGYFLLFENML--NTVLYARDKWLVDDGIVLPDKASLYLT 235 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lip~~~~~~~~ 235 (379)
+||.+..+.--...+.+ ..+...+.+.|+++|.++.+..+.|..
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t 413 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT 413 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC
Confidence 99988643222111111 355666788999999999776665553
No 246
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.87 E-value=0.00029 Score=66.44 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-----CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeec
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-----GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEI 183 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-----g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~ 183 (379)
...|... +.++..++|+|||+|..+..+.+. ...++++||+|. +++.+.+.+....++. .|.-+++|..+.
T Consensus 67 ~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 67 SSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3445533 356779999999999886665542 135799999999 9999998888444432 234488887653
Q ss_pred ----cCC--CCceeEEEEecCccccCC--hhhHHHHHHHHHh-cccCCEEEEe
Q 016992 184 ----ELP--VTKVDIIISEWMGYFLLF--ENMLNTVLYARDK-WLVDDGIVLP 227 (379)
Q Consensus 184 ----~~~--~~~~D~Iv~~~~~~~l~~--~~~~~~~l~~~~~-~LkpgG~lip 227 (379)
+.+ .....+++. +|+.+.+ ......+|+.+++ .|+|||.|+.
T Consensus 145 l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 111 133566665 4444433 2345688899999 9999999874
No 247
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=1e-05 Score=73.31 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..|..++|+|||.|-... ..+...++|+|++. .+..+++. +......+|+..++....+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999984422 12345799999999 88888752 21257778999999988999999998787
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++........+++++.+.|+|||...
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 888777777899999999999999866
No 248
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.81 E-value=0.00026 Score=65.01 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCc-hHHHHHHH-cC-CCEEEEEecHH-HHHHHHHHHH-HcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 123 DKVVLDVGAGTG-ILSLFCAK-AG-AAHVYAVECSQ-MANMAKQIVE-ANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 123 ~~~VLDlGcG~G-~~~~~la~-~g-~~~v~~vD~s~-~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
.++|+=||||+= ..++.+++ .+ ...|+++|+++ +++.+++.+. ..|+..+++|+++|..+...+...||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 359999999975 55566665 34 35899999999 9999999888 66778889999999987765557899998643
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ .-........++..+.+.++||+.++.
T Consensus 201 l--Vg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 201 L--VGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred h--cccccchHHHHHHHHHhhCCCCcEEEE
Confidence 2 111123567999999999999999883
No 249
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00025 Score=61.17 Aligned_cols=101 Identities=23% Similarity=0.237 Sum_probs=74.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~ 192 (379)
..+.+|.+||=||+.+|....+++. .|.+.|||||.|+ +....-..+.+. .||-.+.+|+.... .--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 5578999999999999999999999 5778999999998 544333333332 45777888887542 11367999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+.+.. -.....-+..+...+||+||.++
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEE
Confidence 998742 12445667788899999999766
No 250
>PHA01634 hypothetical protein
Probab=97.74 E-value=0.00015 Score=57.69 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
...+++|+|||++.|..++.++-.|++.|+++|.++ +.+..+++++.+.+-++..-. . +++-.-+.||+.+.+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWNGEYEDVDIFVMDC 100 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cccccCCCcceEEEEc
Confidence 367899999999999999999999999999999999 999999998877543322211 1 2222347789988653
No 251
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00016 Score=70.41 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=80.3
Q ss_pred CCC-EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDK-VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~-~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
+-. ++|-+|||.-.++..+-+.|...|+.+|.|+ .++.+...... .- .-+.+...|+..+.+++++||+|+.....
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~-~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ER-PEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CC-cceEEEEecchhccCCCcceeEEEecCcc
Confidence 344 9999999999999999999999999999999 87777654431 11 33899999999999999999999986543
Q ss_pred cccC-Chh------hHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLL-FEN------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~-~~~------~~~~~l~~~~~~LkpgG~li 226 (379)
..+. .+. .....+.++.++|++||+++
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 3332 222 23466788999999999976
No 252
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00016 Score=59.02 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+..+.+|+|+|.|.+.+.+++.|...-+|+|+++ .+.+++-..-+.|+.....|...|+-..++.+-.+-+|+-
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFg---- 146 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFG---- 146 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEee----
Confidence 45458999999999999999998877889999999 9999999998999988899999999888876444333332
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+..++.+-..+..-|..|..++
T Consensus 147 ----aes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 147 ----AESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred ----hHHHHhhhHHHHHhhCcCCCeEE
Confidence 12445555566666677777777
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.00037 Score=59.27 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=63.1
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEc-ceeecc--------CCC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQMANMAKQIVEANGFSNVITVLKG-KIEEIE--------LPV 187 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~--------~~~ 187 (379)
-+.|+.+|||+||.+|.++..+.+. +.+.|.|||+-. + ... ..+.++++ |+.+.. ++.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~--~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------I--EPP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------c--cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 3568999999999999999988874 567999999854 1 111 23556666 665532 456
Q ss_pred CceeEEEEecCccccCChhhH---------HHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENML---------NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~---------~~~l~~~~~~LkpgG~li 226 (379)
.++|+|++++... ..+..+. ..++.-....++|+|.++
T Consensus 135 r~VdvVlSDMapn-aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 135 RPVDVVLSDMAPN-ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CcccEEEeccCCC-CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 7899999985321 1111111 223333346788999988
No 254
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.70 E-value=9.7e-05 Score=67.21 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCC---------------------------C
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGF---------------------------S 170 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~---------------------------~ 170 (379)
...+|.++||||||+-......|..-+.+|+..|..+ -.+..++.++..+- -
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 3456889999999996554444433357899999988 77766555532110 0
Q ss_pred CcE-EEEEcceeecc-CCC-----CceeEEEEecCccc-cCChhhHHHHHHHHHhcccCCEEEE
Q 016992 171 NVI-TVLKGKIEEIE-LPV-----TKVDIIISEWMGYF-LLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 171 ~~i-~~~~~d~~~~~-~~~-----~~~D~Iv~~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..| .++.+|+.+.+ +.. ++||+|++...... -.........++++.++|||||.|+
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 113 47778887643 211 35999998543221 1234556788999999999999998
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.63 E-value=0.00028 Score=57.90 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=57.6
Q ss_pred EEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCceeEEEEecCccccCChhh-------HHHHHHHHH
Q 016992 147 HVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFLLFENM-------LNTVLYARD 216 (379)
Q Consensus 147 ~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l~~~~~-------~~~~l~~~~ 216 (379)
+|+|.|+.+ +++..+++++..++.+++++++..-+.+.. +.+++|+++.++ ||...+... --..++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 699999999 999999999999998899999988887752 324899999883 554332211 236677788
Q ss_pred hcccCCEEEE
Q 016992 217 KWLVDDGIVL 226 (379)
Q Consensus 217 ~~LkpgG~li 226 (379)
++|+|||.++
T Consensus 80 ~lL~~gG~i~ 89 (140)
T PF06962_consen 80 ELLKPGGIIT 89 (140)
T ss_dssp HHEEEEEEEE
T ss_pred HhhccCCEEE
Confidence 9999999987
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.61 E-value=0.00096 Score=58.54 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+.++.||||--|.+...+.+. .+..++++|+++ -++.|.+++.++++.+++++..+|....-..+..+|+|+...||
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 4556999999999999999995 568999999999 99999999999999999999999985443334579999976664
Q ss_pred cccCChhhHHHHHHHHHhccc
Q 016992 200 YFLLFENMLNTVLYARDKWLV 220 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lk 220 (379)
- ..+..+|.+....|+
T Consensus 96 G-----~lI~~ILee~~~~l~ 111 (226)
T COG2384 96 G-----TLIREILEEGKEKLK 111 (226)
T ss_pred H-----HHHHHHHHHhhhhhc
Confidence 3 345667776666665
No 257
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.58 E-value=0.00022 Score=66.74 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcccc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFL 202 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l 202 (379)
...+|+|.|.|.++..+... ..+|-+++... .+..++..+. .| |+.+-+|+..- .| +-|+|+.-|+.+.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TP--KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CC--CcCeEEEEeecccC
Confidence 68999999999998888873 45789999987 6665555554 33 77888888766 43 55799998876555
Q ss_pred CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.. .+.-++|++++..|+|||.++.
T Consensus 250 tD-edcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 250 TD-EDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred Ch-HHHHHHHHHHHHhCCCCCEEEE
Confidence 43 5677999999999999999873
No 258
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.52 E-value=0.00033 Score=61.46 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=65.3
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEecCcc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEWMGY 200 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~ 200 (379)
.++|||||=+..... +..+.-.|+.||+++ ..-.+.+.|+.+.++| .++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 599999987543322 233445799999976 2235678899888764 68999999998888
Q ss_pred ccCChhhHHHHHHHHHhcccCCEE
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~ 224 (379)
++......-.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 887777778999999999999999
No 259
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.52 E-value=0.00063 Score=63.54 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=66.2
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----LP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 186 (379)
+...+...+|..++|.=+|.|+-+..+++. +.++|+|+|.++ ++..|++.+... .+++.+++++..++. ..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC
Confidence 334455678889999999999999999884 457999999999 999999988754 368999999988764 12
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
..++|.|+.++
T Consensus 90 ~~~vDgIl~DL 100 (305)
T TIGR00006 90 VTKIDGILVDL 100 (305)
T ss_pred CCcccEEEEec
Confidence 35799999774
No 260
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=5.4e-05 Score=62.73 Aligned_cols=110 Identities=22% Similarity=0.290 Sum_probs=75.0
Q ss_pred HHhccCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCC--CcEEEEEcceeecc--CC
Q 016992 114 IYQNKFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFS--NVITVLKGKIEEIE--LP 186 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~--~~ 186 (379)
+.+......|..||++|.| +|..++++|. .+...|...|-++ .++-.++....|..+ .++.++..+...-. ..
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~e 100 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQE 100 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHh
Confidence 4443444567899999999 5777888877 5678999999999 999988887776332 22222222221111 12
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...||+|+|.- +++..+.-..+.+.+.++|+|.|.-+
T Consensus 101 q~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 101 QHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred hCcccEEEecc---chhHHHHHHHHHHHHHHHhCccccee
Confidence 35899999842 33334566788899999999999854
No 261
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.49 E-value=0.00062 Score=62.00 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCCC-CCCEEEEEcCCC--chHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce
Q 016992 107 TKSYQNVIYQNKFLF-KDKVVLDVGAGT--GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~-~~~~VLDlGcG~--G~~~~~la~--~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
+..|.....+.+... --...||||||- -...-.+|+ .+..+|+-||.++ .+..++..+..+.- ....++++|+
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 444443333333333 235799999994 234455555 4667999999999 99999998876642 3489999999
Q ss_pred eecc-----------CC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 181 EEIE-----------LP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 181 ~~~~-----------~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.+.. +. +..+=+++.. +.+++..+.++..++..+...|.||.+++.+.
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~-vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVA-VLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeee-eeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 7642 11 3555555554 34667776789999999999999999998543
No 262
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.46 E-value=0.00016 Score=67.02 Aligned_cols=84 Identities=24% Similarity=0.226 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHH-------HHHHHHHHcCCC-CcEEEEEcceeeccCC-C
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-------MAKQIVEANGFS-NVITVLKGKIEEIELP-V 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~-------~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~ 187 (379)
....+|+.|+|--.|||.+...+|..|+ .|+|.|++- ++. -.+.|+++.|.. .-+.++.+|...-++. .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4568999999999999999999999987 999999998 776 346777777743 3366777887776543 4
Q ss_pred CceeEEEEecCccccC
Q 016992 188 TKVDIIISEWMGYFLL 203 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~ 203 (379)
..||.|||+++ |++.
T Consensus 283 ~~fDaIvcDPP-YGVR 297 (421)
T KOG2671|consen 283 LKFDAIVCDPP-YGVR 297 (421)
T ss_pred ceeeEEEeCCC-cchh
Confidence 68999999974 7653
No 263
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.44 E-value=0.00071 Score=65.44 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCC-cEEEEEcceeeccC-CCCceeEEEEe
Q 016992 122 KDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSN-VITVLKGKIEEIEL-PVTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~D~Iv~~ 196 (379)
.+.+|||.=+|+|.=++-.+.- +..+|++-|+|+ +++.+++|++.|++.+ ++++.+.|+..+-. ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4468999999999988888774 668999999999 9999999999999987 79999999988642 34889999988
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++ +.+..+++...+.++.||.+..
T Consensus 129 Pf-------GSp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 129 PF-------GSPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp -S-------S--HHHHHHHHHHEEEEEEEEE
T ss_pred CC-------CCccHhHHHHHHHhhcCCEEEE
Confidence 76 3456788888899999999873
No 264
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.00097 Score=61.29 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-----------------------------
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV----------------------------- 172 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~----------------------------- 172 (379)
..+||--|||.|.++..+|..|. .+-|=|.|- |+-...-.+..-..++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 45899999999999999999987 667778888 76544333311111111
Q ss_pred ----------EEEEEcceeeccCC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 173 ----------ITVLKGKIEEIELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 173 ----------i~~~~~d~~~~~~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+-.||+.+.--. .+.||+|+. ++++.....+-..++.+...|||||+.|
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvT---cfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVT---CFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEE---EEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 11122333332111 246999995 4666666777889999999999999987
No 265
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.40 E-value=0.0038 Score=55.80 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=61.7
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~I 193 (379)
.....|++||-+|-.- ..++.+|. ...++|+.+|+++ +++..++.+++.|++ |+.+..|+.+--.+ .++||++
T Consensus 40 ~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 40 RGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred cCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 3446889999999665 55566555 3457999999999 999999999999985 99999998764221 4899999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG 223 (379)
+++++ +-+ .-+.-++......||..|
T Consensus 117 ~TDPP-yT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 117 FTDPP-YTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EE----SSH---HHHHHHHHHHHHTB-STT
T ss_pred EeCCC-CCH---HHHHHHHHHHHHHhCCCC
Confidence 99985 444 456677777777887665
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.39 E-value=0.00069 Score=60.60 Aligned_cols=85 Identities=24% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHhccCCCCCC--EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH---HcCC-----CCcEEEEEcceee
Q 016992 114 IYQNKFLFKDK--VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE---ANGF-----SNVITVLKGKIEE 182 (379)
Q Consensus 114 i~~~~~~~~~~--~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~---~~~~-----~~~i~~~~~d~~~ 182 (379)
|.++..+.++. +|||.-+|-|.-++.+|..|. +|+++|.|+ +..+.+.-++ ...- ..+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 44445455553 899999999999999998886 899999999 7665554332 2221 1479999999988
Q ss_pred cc-CCCCceeEEEEecCc
Q 016992 183 IE-LPVTKVDIIISEWMG 199 (379)
Q Consensus 183 ~~-~~~~~~D~Iv~~~~~ 199 (379)
+- .++.+||+|+.++|.
T Consensus 144 ~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp HCCCHSS--SEEEE--S-
T ss_pred HHhhcCCCCCEEEECCCC
Confidence 53 335899999999983
No 267
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.31 E-value=6e-05 Score=64.99 Aligned_cols=93 Identities=28% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
..+.++||+|+|.|.++..++.. ..+|+|.|.|. |....++. +. .++. ..+..-.+-++|+|.|-.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~--~~ew~~t~~k~dli~clNl- 178 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLT--EIEWLQTDVKLDLILCLNL- 178 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceee--ehhhhhcCceeehHHHHHH-
Confidence 34579999999999999998875 45899999999 98877652 21 2211 1111112356999997322
Q ss_pred cccCChhhHHHHHHHHHhcccC-CEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVD-DGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~Lkp-gG~lip 227 (379)
+...-++-++|+.++.+|.| +|.+|.
T Consensus 179 --LDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 179 --LDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred --HHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 33334567899999999999 888774
No 268
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00036 Score=61.24 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHc--C------C--CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeecc--------C
Q 016992 124 KVVLDVGAGTGILSLFCAKA--G------A--AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIE--------L 185 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~--g------~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 185 (379)
.+|+|+|+.+|.++..+++. . . +.|++||+.+|+. + ..|.-+++|++... +
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I-~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------I-EGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------c-CceEEeecccCCHhHHHHHHHHh
Confidence 57999999999999999883 1 1 2399999977433 3 33777889987753 4
Q ss_pred CCCceeEEEEecCcc--ccCCh------hhHHHHHHHHHhcccCCEEEE
Q 016992 186 PVTKVDIIISEWMGY--FLLFE------NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~--~l~~~------~~~~~~l~~~~~~LkpgG~li 226 (379)
..++.|+|||+.... +++.. ..+...|.-...+|||||.|+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 457999999975322 22211 112344555678999999998
No 269
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00013 Score=66.51 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCchHHH-HHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 121 FKDKVVLDVGAGTGILSL-FCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~-~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
-.+..|.|+-+|-|.+++ .+..+|++.|+|+|.++ .++..+++++.|++.++..++.+|-....+. ...|-|...++
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~AdrVnLGLl 271 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADRVNLGLL 271 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchheeeccc
Confidence 345799999999999999 77789999999999999 9999999999999888888888888776554 78899985443
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEE-EE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGI-VL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~-li 226 (379)
. ..++...... +.|||.|- ++
T Consensus 272 P---Sse~~W~~A~----k~Lk~eggsil 293 (351)
T KOG1227|consen 272 P---SSEQGWPTAI----KALKPEGGSIL 293 (351)
T ss_pred c---ccccchHHHH----HHhhhcCCcEE
Confidence 2 2334444433 55666554 44
No 270
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.18 E-value=0.00094 Score=57.64 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcC-------CCCcEEEEEcceeeccC---CCCc
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANG-------FSNVITVLKGKIEEIEL---PVTK 189 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~~---~~~~ 189 (379)
+.-.+.|||||-|.+.+.++. .+..-+.|.|+-. ..++.++++...+ + .++.+...++..... ..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhhhcc
Confidence 334699999999999999998 4667899999999 9999999888764 3 346677666554421 1111
Q ss_pred eeEEE-EecCccccCCh----hhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIII-SEWMGYFLLFE----NMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv-~~~~~~~l~~~----~~~~~~l~~~~~~LkpgG~li 226 (379)
.+-.+ +-+-.++-... -.-..++.+..-+|++||.++
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 11111 11000100000 011467778888999999988
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.11 E-value=0.0035 Score=54.98 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH----c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~----~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
....-.|.+.|-+. +++.|+++|.-.|+.+++.|. . +.++|+|||++- ..... .++...+..+|++++
T Consensus 18 P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~ 91 (206)
T PF04989_consen 18 PQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQ 91 (206)
T ss_dssp HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEE
T ss_pred HHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEE
Confidence 33344555555543 557999999999988887775 2 457999999964 22211 122234457899999
Q ss_pred cceeeccC--------CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 178 GKIEEIEL--------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 178 ~d~~~~~~--------~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+|..+... ......+|+-+. .-.+ ......|.....++++|+++|..
T Consensus 92 Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~-~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 92 GDSIDPEIVDQVRELASPPHPVLVILDS---SHTH-EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp S-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred CCCCCHHHHHHHHHhhccCCceEEEECC---CccH-HHHHHHHHHhCccCCCCCEEEEE
Confidence 99876531 123445777543 1112 34456677789999999999844
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.05 E-value=0.0038 Score=56.18 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 107 TKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 107 ~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.+...+.. ...+..+|+|||||.=-++...... +...++|+|++. +++.....+...+.. .++...|...-+
T Consensus 92 Ld~fY~~if~--~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFG--RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCC--CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred HHHHHHHHHh--cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence 4445555543 2345789999999998888876653 335999999999 999999999998875 556666766554
Q ss_pred CCCCceeEEEE
Q 016992 185 LPVTKVDIIIS 195 (379)
Q Consensus 185 ~~~~~~D~Iv~ 195 (379)
.+ ...|+.+.
T Consensus 168 ~~-~~~DlaLl 177 (251)
T PF07091_consen 168 PK-EPADLALL 177 (251)
T ss_dssp TT-SEESEEEE
T ss_pred CC-CCcchhhH
Confidence 43 77899985
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.0027 Score=59.28 Aligned_cols=111 Identities=18% Similarity=0.096 Sum_probs=64.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeec--cCC-CC
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI--ELP-VT 188 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~ 188 (379)
+..........+|||+|.|+|.-...+-. .+ ...++.++.|+.+...-.-+..+-..........|+..- +++ ..
T Consensus 105 L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad 184 (484)
T COG5459 105 LQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAAD 184 (484)
T ss_pred HHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccc
Confidence 33334556667899999999876555544 23 367888999984443333344433222233333343322 222 24
Q ss_pred ceeEEEEecCccccC---ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 189 KVDIIISEWMGYFLL---FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|++++. ..-|. .+..+...++.+..++.|||.++.
T Consensus 185 ~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 185 LYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred eeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 5666664 22222 234455688889999999999873
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.80 E-value=0.0019 Score=60.02 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=56.6
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeEEEEecCccc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDIIISEWMGYF 201 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~Iv~~~~~~~ 201 (379)
+|+|+.||.|.++..+.+.|...|.++|+++ +++..+.+... .++++|+.++... ...+|+++..++|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 6899999999999999889988899999999 88887776532 1567788777532 257999999887665
Q ss_pred c
Q 016992 202 L 202 (379)
Q Consensus 202 l 202 (379)
.
T Consensus 75 f 75 (275)
T cd00315 75 F 75 (275)
T ss_pred h
Confidence 4
No 275
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.71 E-value=0.0026 Score=62.47 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=64.4
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCC--EEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCcc
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAA--HVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGY 200 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~ 200 (379)
-..|+|..+|.|+++..+...+.- .|+-++-..-+.+. -..|+ |-+.+.-.+.++.-...||+|.++.+.+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vI----ydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVI----YDRGL---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhh----hhccc---chhccchhhccCCCCcchhheehhhhhh
Confidence 358999999999999998876531 22222211122222 22344 3344433344443348999999976655
Q ss_pred ccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 201 FLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 201 ~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
...+.-.+..++-++.|.|+|||.+|..
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 5555556789999999999999999853
No 276
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.70 E-value=0.006 Score=56.63 Aligned_cols=95 Identities=26% Similarity=0.261 Sum_probs=65.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce--eec------cCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI--EEI------ELP 186 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--~~~------~~~ 186 (379)
....+|.+||-+|+|+ |.+++..|+ .|+++|+.+|+++ .++.|++ + |.. .+....... .++ .+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhcc
Confidence 4567899999999997 888999999 6999999999999 9999988 3 332 122221111 111 012
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...+|+.+. +++ ....++.....+++||.++
T Consensus 240 ~~~~d~~~d---CsG------~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 240 KKQPDVTFD---CSG------AEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred ccCCCeEEE---ccC------chHHHHHHHHHhccCCEEE
Confidence 345888884 222 2445566667889999976
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.65 E-value=0.011 Score=55.99 Aligned_cols=91 Identities=27% Similarity=0.269 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-eeeccCCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEEIELPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~D~I 193 (379)
....||++|+-+|+| .|.++..+|+ .| .+|+++|.++ ..+.|++.-. -.++... ......-.+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 456789999999998 2467778888 67 5999999999 9999887532 2333322 21111111349999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... . ...+....+.|++||.++
T Consensus 234 i~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 234 IDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred EECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 8632 2 344556668899999988
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.59 E-value=0.0064 Score=53.93 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=67.9
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-H----HHHHHHHHHHcCCCCcEEEEEcceeecc---CC
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-M----ANMAKQIVEANGFSNVITVLKGKIEEIE---LP 186 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~----~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~ 186 (379)
++.+.+|.+||=||+++|....+++.. | ..-|||||.|. . +..|+++ .||-.+..|+.... ..
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeee
Confidence 466789999999999999998888884 3 46899999986 4 3344332 33555555776432 11
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
-.-+|+|+++... ......+.-+...+||+||-++.+
T Consensus 224 VgmVDvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 224 VGMVDVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeEEEEeccCCC-----chhhhhhhhhhhhhhccCCeEEEE
Confidence 2468999987531 122334444667899999998854
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.58 E-value=0.0033 Score=60.56 Aligned_cols=94 Identities=31% Similarity=0.340 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-ee-ec-cCC-CCceeE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IE-EI-ELP-VTKVDI 192 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~-~~-~~~-~~~~D~ 192 (379)
..++.+|+-+|||+ |+++..+++ .|+.+|+++|.++ .++.|++.... +.+.....+ .. .. ... ...+|+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCE
Confidence 34555999999998 888888888 6999999999999 99999874322 111111111 10 00 111 236999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++- ..+ ....+....+.++|||.++
T Consensus 242 vie-~~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 242 VIE-AVG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred EEE-CCC--------CHHHHHHHHHHhcCCCEEE
Confidence 983 222 2346677778999999987
No 280
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.56 E-value=0.038 Score=48.41 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH-cC--CCEEEEEecHH-HHHHHHHHHHH-----------------
Q 016992 108 KSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK-AG--AAHVYAVECSQ-MANMAKQIVEA----------------- 166 (379)
Q Consensus 108 ~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g--~~~v~~vD~s~-~~~~a~~~~~~----------------- 166 (379)
+.+.+++.. .....+-++.|-|||.|.+...+.- .+ ...|+|-|+++ +++.|++|+.-
T Consensus 38 Ei~qR~l~~-l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHY-LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCT-SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 344444432 2223445899999999988776665 22 36899999999 99999999821
Q ss_pred ------------------------cCCCCcEEEEEcceeec------cCCCCceeEEEEecCcccc--CC-----hhhHH
Q 016992 167 ------------------------NGFSNVITVLKGKIEEI------ELPVTKVDIIISEWMGYFL--LF-----ENMLN 209 (379)
Q Consensus 167 ------------------------~~~~~~i~~~~~d~~~~------~~~~~~~D~Iv~~~~~~~l--~~-----~~~~~ 209 (379)
.|-.....+.+.|+.+. +.. ...|+|+.+.+ |+- .. ..-..
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~-~~~diViTDlP-YG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAG-FTPDIVITDLP-YGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT----SEEEEE---CCCSSSTTS---HHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccC-CCCCEEEecCC-CcccccccCCCCCCcHH
Confidence 11122367777777662 222 44699999853 332 11 12357
Q ss_pred HHHHHHHhcccCCEEEE
Q 016992 210 TVLYARDKWLVDDGIVL 226 (379)
Q Consensus 210 ~~l~~~~~~LkpgG~li 226 (379)
.++..+..+|-+++++.
T Consensus 195 ~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHhhCCCCcEEE
Confidence 89999999995555544
No 281
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.52 E-value=0.019 Score=57.72 Aligned_cols=114 Identities=17% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc-C----CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G----AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g----~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.|.+.+.+.+..+|+|..||+|++...+++. + ...++|.|+++ ....|+-++--.|+...+....+|...-+
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~ 254 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNP 254 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCC
Confidence 344555455567779999999999888877763 2 25799999999 99999999988887533566666654433
Q ss_pred C-----CCCceeEEEEecCccccCChh----------------------hHHHHHHHHHhcccCCEE
Q 016992 185 L-----PVTKVDIIISEWMGYFLLFEN----------------------MLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 185 ~-----~~~~~D~Iv~~~~~~~l~~~~----------------------~~~~~l~~~~~~LkpgG~ 224 (379)
. ..++||.|+++++.+.....+ ....++..+...|+|||+
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 2 236799999987543111110 114677788889999773
No 282
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.21 E-value=0.025 Score=56.84 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-----------cc-
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-----------IE- 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-----------~~- 184 (379)
..++.+|+-+|||. |..++.+|+ .|+ .|+++|.++ .++.+++ .|. +++..+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEEeccccccccccchhhhcch
Confidence 45789999999997 778888888 687 899999999 8887765 332 221111110 00
Q ss_pred ---------CC--CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 185 ---------LP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 185 ---------~~--~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+. ...+|+||... +......+..+.+...+.+||||+++.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 01 13589999642 122212233335888899999999884
No 283
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.13 E-value=0.029 Score=50.79 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHc-----CCCCcEEEEEcceeecc---CCCCc-eeE
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEAN-----GFSNVITVLKGKIEEIE---LPVTK-VDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~---~~~~~-~D~ 192 (379)
...+||++|+|+|..++.+|..+...|.--|....+...+.+...+ .+...+.+...+..... +-.+. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4568999999999999999886556899888877433333333322 22224544444443322 11233 899
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|++.-+ +..+.....++..++.+|..+|.++
T Consensus 166 ilasDv---vy~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 166 ILASDV---VYEEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred EEEeee---eecCCcchhHHHHHHHHHhcCCeEE
Confidence 997543 3334555666777777888888443
No 284
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.05 E-value=0.014 Score=50.31 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=69.7
Q ss_pred hccCCCCCCEEEEEcCCCchHHHHHHHc-CC-CEEEEEecHHH-H------HHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 116 QNKFLFKDKVVLDVGAGTGILSLFCAKA-GA-AHVYAVECSQM-A------NMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~G~~~~~la~~-g~-~~v~~vD~s~~-~------~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
....+.+|.+|+|+=.|.|.++..++.. |. +.|++.=..+. . ...+...++... .+++.+-.+...+..+
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~p 120 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGAP 120 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCCC
Confidence 3466789999999999999999999984 43 57887655441 1 111111111222 2355555555555533
Q ss_pred CCceeEEEEecCcc----ccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 187 VTKVDIIISEWMGY----FLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~----~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
+..|++......+ -..+.....++..++.+.|||||+++...
T Consensus 121 -q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 121 -QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 6667766532211 12234556788899999999999987543
No 285
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.04 E-value=0.014 Score=54.62 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L- 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~- 185 (379)
+...+...++..++|.--|.|+-+..+.+ .+..+|+|+|.++ +++.|++++... .+++.++++++.++. .
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHcc
Confidence 33344567888999999999999999998 4558999999999 999998877644 478999999988764 2
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
...++|.|+.++
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 336899999874
No 286
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.03 E-value=0.022 Score=53.88 Aligned_cols=92 Identities=29% Similarity=0.287 Sum_probs=63.9
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCceeEEEEecCcc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTKVDIIISEWMGY 200 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Iv~~~~~~ 200 (379)
+++|+-||.|++++.+.++|...|.++|+++ +++.-+.+.. ....+|+.++. ++. .+|+++..++|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 6999999999999999999988999999999 8888777763 67888998876 332 599999988776
Q ss_pred ccCChh-----------hHHHHHHHHHhcccCCEEEE
Q 016992 201 FLLFEN-----------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 201 ~l~~~~-----------~~~~~l~~~~~~LkpgG~li 226 (379)
.+...+ ....+++.+ +.++|.-.++
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ 108 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLL 108 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEE
T ss_pred eEeccccccccccccchhhHHHHHHH-hhccceEEEe
Confidence 654433 122333333 4467776555
No 287
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.02 E-value=0.05 Score=50.24 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=66.8
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHHc-C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAKA-G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----- 185 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~~-g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----- 185 (379)
+...+...++...+|.--|.|+.+..+... + .++++|+|.++ +++.|++.....+ +++.+++.++.++..
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 444566778899999999999999998884 3 36899999999 9999999998766 689999998877642
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|-|+.++
T Consensus 93 ~i~~vDGiL~DL 104 (314)
T COG0275 93 GIGKVDGILLDL 104 (314)
T ss_pred CCCceeEEEEec
Confidence 246889998763
No 288
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.018 Score=54.49 Aligned_cols=97 Identities=22% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCc
Q 016992 123 DKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~ 199 (379)
..+|||.=+|+|.=++-++. .+..+|+.=|+|+ +++.+++|+..|.. ....++..|+..+-.. ...||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCCCC
Confidence 67999999999999998888 5656999999999 99999999999943 3366676887766432 3789999888764
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+ +..++++..+.++.||.+..
T Consensus 132 S-------PaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 132 S-------PAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred C-------CchHHHHHHHHhhcCCEEEE
Confidence 3 44567777788888998763
No 289
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.96 E-value=0.0065 Score=55.51 Aligned_cols=105 Identities=21% Similarity=0.298 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHH-------HHHHH--HcCCCCcEEEEEcceeeccC-CCC
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMA-------KQIVE--ANGFSNVITVLKGKIEEIEL-PVT 188 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a-------~~~~~--~~~~~~~i~~~~~d~~~~~~-~~~ 188 (379)
...+++|||+|||+|..++.+...|+..+...|.+. .++.- .-.+. .+....-..+.+.+..+..+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 468899999999999999999998878899999887 55211 00000 00010112222221111111 013
Q ss_pred --ceeEEEEecCccccCChhhHHHH-HHHHHhcccCCEEEEe
Q 016992 189 --KVDIIISEWMGYFLLFENMLNTV-LYARDKWLVDDGIVLP 227 (379)
Q Consensus 189 --~~D~Iv~~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lip 227 (379)
.||+|.+.-+.|-. ...+.+ +.....+++++|+++.
T Consensus 194 ~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhh
Confidence 67888764333332 333444 5666778899998763
No 290
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.0028 Score=61.79 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC----CCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP----VTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~D~I 193 (379)
.++-+|||.=|++|+-++..|+ . |..+|++-|.++ .++..+++++.|+..+.++..+.|+..+-.. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3456899999999999999888 3 678999999999 9999999999999988899999998765432 4789999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
=.++.| ....+|+...+.++.||.+...
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEE
Confidence 988753 3456788888888999998743
No 291
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.037 Score=50.82 Aligned_cols=107 Identities=21% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc-CCCEEEEEecHH-HHHHHHHHHHHc--CCC-CcEEEEEcceeecc--CCCCceeEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA-GAAHVYAVECSQ-MANMAKQIVEAN--GFS-NVITVLKGKIEEIE--LPVTKVDII 193 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~--~~~-~~i~~~~~d~~~~~--~~~~~~D~I 193 (379)
...++||-||-|.|......+++ ....+.-+|+.. .++..++..... |.. .+|.++-||...+- ...++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45679999999999998888885 346889999999 889888887653 332 56888888876542 224889999
Q ss_pred EEecCccccCChh-hHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFEN-MLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+.-.-...... -...+...+.+.||+||+++.
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 9864221111111 124566677899999999883
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.74 E-value=0.044 Score=52.41 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
...++.+||-.|||. |.++..+++ .|+.+|+++|.++ .++.+++ .|...-+.....+..++....+.+|+|+-
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEE
Confidence 345788999999864 566667777 5777899999998 8887765 34321111111122222111235898884
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .+ . ...+....+.|++||.++
T Consensus 242 ~-~G-------~-~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 242 V-SG-------H-PSSINTCLEVTRAKGVMV 263 (343)
T ss_pred C-CC-------C-HHHHHHHHHHhhcCCEEE
Confidence 2 22 1 234555667899999988
No 293
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.49 E-value=0.035 Score=49.16 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHH--HcCCCEEEEEecHH-HHHHHHHHHHHc-CCCCcEEEEEcceeeccCC-----CCceeE
Q 016992 122 KDKVVLDVGAGTGILSLFCA--KAGAAHVYAVECSQ-MANMAKQIVEAN-GFSNVITVLKGKIEEIELP-----VTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la--~~g~~~v~~vD~s~-~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-----~~~~D~ 192 (379)
++.++||||.|.--+=-.+. ..|. +.+|.|+++ .+..|+.++..| ++...|++....-.+--++ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 45689999998753211121 2344 899999999 999999999998 7777777765432222122 588999
Q ss_pred EEEecC
Q 016992 193 IISEWM 198 (379)
Q Consensus 193 Iv~~~~ 198 (379)
+.|+++
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999985
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.48 E-value=0.099 Score=50.96 Aligned_cols=104 Identities=24% Similarity=0.228 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc-eee-c-cC-CCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK-IEE-I-EL-PVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d-~~~-~-~~-~~~~~ 190 (379)
....++.+||.+|||. |..+..+|+ .|..+|+++|.++ ..+.+++.. +. ..+.....+ ... + .+ ....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4567889999999987 888888888 5766799999999 988887642 21 112222111 110 1 11 22468
Q ss_pred eEEEEecCccc-------------cCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYF-------------LLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~-------------l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+... +.. +...++....+....+.|+++|.++
T Consensus 256 D~vld~v-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 256 DVCIDAV-GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred CEEEECC-CCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 9888532 110 0011223456777889999999987
No 295
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.08 E-value=0.089 Score=47.86 Aligned_cols=96 Identities=20% Similarity=0.268 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcC-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEE
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAG-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv 194 (379)
...|+.|+-+| -.-..+++++-.| +++|..||+++ .++...+.++..|+ ++|+.+.-|+.+. +| ..+||+++
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHHHHhhCCeee
Confidence 45678899999 4446666666643 57999999999 99999999999999 5689998888764 22 47899999
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCC
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
.+++-.. ..+..++..--..||.-
T Consensus 227 TDPpeTi----~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPETI----KALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchhhH----HHHHHHHhccHHHhcCC
Confidence 9875222 44555665544556654
No 296
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.97 E-value=0.073 Score=48.04 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
.+.+|+...|+|+.+|+++..+.+.+- .|++||.-+|.... -.. +.|+....|-..+.....+.|-.||+++
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hcc---cceeeeeccCcccccCCCCCceEEeehh
Confidence 356899999999999999999999865 99999987743322 122 4588888888777653478999999875
Q ss_pred ccccCChhhHHHHHHHHHhcccCC
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDD 222 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~Lkpg 222 (379)
..+..+-..+..+|..|
T Consensus 280 -------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 -------EKPARVAALIAKWLVNG 296 (358)
T ss_pred -------cCcHHHHHHHHHHHHcc
Confidence 44556666666777654
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=94.85 E-value=0.085 Score=49.23 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~ 166 (379)
-.+|..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 37899999999999999998888864 999999999 99999999864
No 298
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.67 E-value=0.15 Score=48.75 Aligned_cols=109 Identities=21% Similarity=0.173 Sum_probs=74.5
Q ss_pred HHhccCCCCCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHH-------HcCC-CCcEEEEEcceeec
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVE-------ANGF-SNVITVLKGKIEEI 183 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~-------~~~~-~~~i~~~~~d~~~~ 183 (379)
+.......++....|+|.|-|.+..++|. .+.+.=+|+++.+ ..+.|..+.. ..|- ++.++.+++++.+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 33335567889999999999999888887 4667778888876 5554443332 2333 35688888887654
Q ss_pred cCC---CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 ELP---VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~~~---~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..- ....++|+++.+ .+. +.+..=+.++..-+++|.++|
T Consensus 264 ~~v~eI~~eatvi~vNN~---~Fd-p~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNV---AFD-PELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHHHHhhcceEEEEecc---cCC-HHHHHhhHHHHhhCCCcceEe
Confidence 311 366899998754 222 444444457888899999988
No 299
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.64 E-value=0.077 Score=47.19 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHH
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~ 162 (379)
-.+|..|||.-||+|..+.++.+.|- +.+|+|+++ .+++|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 46799999999999999998888865 899999999 9998874
No 300
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.57 E-value=0.32 Score=44.26 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHH----cC--CCEEEEEecHH---------------------
Q 016992 103 DVVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAK----AG--AAHVYAVECSQ--------------------- 155 (379)
Q Consensus 103 d~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~----~g--~~~v~~vD~s~--------------------- 155 (379)
...|...+..++.......-...|+|+||-.|..++.++. .+ ..++++.|.=+
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 3455666666666654333344899999999987766543 12 35788877311
Q ss_pred ------HHHHHHHHHHHcCC-CCcEEEEEcceeeccC--CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 156 ------MANMAKQIVEANGF-SNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 156 ------~~~~a~~~~~~~~~-~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.++..++++.+.|+ .+++.++.|.+.+.-. +.+++-++..+. + .+ ......|..++..|.|||+++
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-D---lY-esT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-D---LY-ESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SH-HHHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec-c---ch-HHHHHHHHHHHhhcCCCeEEE
Confidence 22333444444453 3679999999876421 234555555442 1 11 345688899999999999999
Q ss_pred ecCCce
Q 016992 227 PDKASL 232 (379)
Q Consensus 227 p~~~~~ 232 (379)
+.....
T Consensus 210 ~DDY~~ 215 (248)
T PF05711_consen 210 FDDYGH 215 (248)
T ss_dssp ESSTTT
T ss_pred EeCCCC
Confidence 766544
No 301
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.54 E-value=0.24 Score=48.63 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ ....|+. .|. ..+ +..+. . ..+|+|+..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~-v--~~aDVVI~a 264 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA-V--KEGDIFVTT 264 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH-H--cCCCEEEEC
Confidence 36899999999997 655555555 577 899999998 7776654 343 222 11221 1 357999853
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. +....+-....+.+|+||+++.
T Consensus 265 t--------G~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 265 T--------GNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred C--------CCHHHHHHHHHhcCCCCcEEEE
Confidence 1 1222223344788999999873
No 302
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.35 E-value=0.053 Score=51.37 Aligned_cols=71 Identities=24% Similarity=0.275 Sum_probs=54.1
Q ss_pred EEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccccC
Q 016992 126 VLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYFLL 203 (379)
Q Consensus 126 VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~ 203 (379)
|+|+-||.|+++.-+.++|...+.++|+++ +++.-+.++. + .++.+|+.++... ...+|+++..++|..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 689999999999999889987788999999 8777776642 2 4456788777532 24689999887665543
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.26 E-value=0.12 Score=51.92 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee---------------
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE--------------- 182 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~--------------- 182 (379)
.++.+|+-+|+|. |..+..+++ .|+ .|+++|.++ .++.++. .|. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 4678999999996 666776777 576 799999999 7766654 232 222222211
Q ss_pred --------ccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 183 --------IELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 183 --------~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+......+|+|+...+ +.+.+.+.-+.++..+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1101256999987542 2222233335566778899999987
No 304
>PRK13699 putative methylase; Provisional
Probab=94.21 E-value=0.19 Score=45.27 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
.+|..|||.-||+|..+..+.+.|. +.+|+|+++ ..+.|.+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 5889999999999999998888865 899999999 999998888753
No 305
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.16 E-value=0.024 Score=54.51 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCc-EEEEEcceeec
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNV-ITVLKGKIEEI 183 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~-i~~~~~d~~~~ 183 (379)
...+|..|.|+.||-|.+++.+++.+ +.|++-|.++ ++++.+.+++-|.+... |+++..|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 34789999999999999999999987 6999999999 99999999999888755 89988887654
No 306
>PRK13699 putative methylase; Provisional
Probab=93.83 E-value=0.066 Score=48.21 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=40.1
Q ss_pred EEEEEcceeec--cCCCCceeEEEEecCccccC-----C--------hhhHHHHHHHHHhcccCCEEEE
Q 016992 173 ITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL-----F--------ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 173 i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~-----~--------~~~~~~~l~~~~~~LkpgG~li 226 (379)
++++++|+.++ .++++++|+|+.+++ |.+. + .......+.++.|+|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 46788998876 577899999999975 5431 0 1234578899999999999887
No 307
>PRK11524 putative methyltransferase; Provisional
Probab=93.83 E-value=0.077 Score=49.50 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=40.8
Q ss_pred cEEEEEcceeec--cCCCCceeEEEEecCccccC--------------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 172 VITVLKGKIEEI--ELPVTKVDIIISEWMGYFLL--------------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 172 ~i~~~~~d~~~~--~~~~~~~D~Iv~~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
..+++++|+.++ .+++++||+|+++++ |.+. +...+..++.++.++|||||.|+.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 357899999885 356689999999975 4331 012235788999999999999874
No 308
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.63 E-value=0.059 Score=41.89 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH
Q 016992 122 KDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ 155 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~ 155 (379)
+.....|||||+|.+.-.+..-|. .=+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 445799999999999999988776 667888643
No 309
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.62 E-value=0.18 Score=48.75 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-ecc-CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EIE-LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~-~~~~~~D~ 192 (379)
....++.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+.. .+. ...+.+|+
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4567889999999764 556666677 5776899999998 8877754 343211111111111 110 11236898
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
|+-. .+. ...+....+.|+++|.++.
T Consensus 263 vid~-~G~--------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEM-AGS--------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred EEEC-CCC--------hHHHHHHHHHHhcCCEEEE
Confidence 8842 211 1344555678999999873
No 310
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.50 E-value=0.31 Score=46.60 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH--cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK--AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~--~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
..+|.+||-+|||. |.++..+++ .|..+|+++|.++ .++.+++ .+. ...+ + ++. ....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~~-~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DIP-EDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hhh-hccCCcEEEE
Confidence 46789999999875 555555555 3667899999999 8888764 221 1111 1 111 1124898883
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+. ......+....++|++||+++
T Consensus 229 -~~G~-----~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 229 -CVGG-----RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred -CCCC-----CccHHHHHHHHHhCcCCcEEE
Confidence 2221 112345666678999999987
No 311
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.40 E-value=1.3 Score=40.82 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEccee
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKIE 181 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~~ 181 (379)
..|+..+-+.+.+..... ...|+.||||-=.-..-+......+++=||..++++.-++.+...+. ..+..++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 345555556665544322 34799999997655554432212467777776677777777776543 366889999986
Q ss_pred ec-----c---CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 182 EI-----E---LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 182 ~~-----~---~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+- . +.....-+++++.+..++. +.....++..+.....||+.+++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 21 0 1223456888887765553 45678899999888889999886543
No 312
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.35 E-value=0.23 Score=46.10 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 123 DKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 123 ~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
+.+|.-||.|. |.-+.-+|- .|+ .|+.+|+|. .+......+. .++..+......+...-.+.|+||...+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL- 240 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL- 240 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE-
Confidence 34677788775 444444444 344 999999998 7777665543 5688888777777655578999997643
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+.+...+.-+.+++.+.+|||++++
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEE
Confidence 3444566667788889999999988
No 313
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.23 E-value=0.25 Score=46.47 Aligned_cols=83 Identities=25% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
.++.+||-+|||. |.++..+|+ .|+..|+++|.++ .++.|.+. . ++ |..+. ....+|+|+-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~--~~~g~Dvvid~- 207 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD--PRRDYRAIYDA- 207 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc--cCCCCCEEEEC-
Confidence 4577899999874 677777777 5887788899888 76666431 1 11 11110 12468988842
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+ . ...+....+.|+++|+++
T Consensus 208 ~G-------~-~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 208 SG-------D-PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred CC-------C-HHHHHHHHHhhhcCcEEE
Confidence 22 1 234556668899999988
No 314
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.16 E-value=0.7 Score=44.39 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=58.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-cc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (379)
....+|.+||-.|+|. |..+..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+..+ +. .....+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 4567899999999764 566666777 5776799999998 8777754 3432111111111111 10 1224589
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+|+- ..+ . ...+....+.|++||+++.
T Consensus 248 ~vid-~~g-------~-~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 248 VVID-AVG-------R-PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred EEEE-CCC-------C-HHHHHHHHHHhccCCEEEE
Confidence 8884 221 1 1234455678999999873
No 315
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.11 E-value=0.14 Score=48.89 Aligned_cols=74 Identities=27% Similarity=0.227 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCC--C-ceeEEEEecCc
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPV--T-KVDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~~D~Iv~~~~~ 199 (379)
.+++|+-||.|++.+-+...|..-+.++|+++ .++.-+.+... ..++..|+.++.... . .+|+++..++|
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 58999999999999999899988899999999 77776665542 356667777654321 2 78999998877
Q ss_pred cccC
Q 016992 200 YFLL 203 (379)
Q Consensus 200 ~~l~ 203 (379)
..+.
T Consensus 78 Q~FS 81 (328)
T COG0270 78 QDFS 81 (328)
T ss_pred cchh
Confidence 6553
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.88 E-value=0.21 Score=46.26 Aligned_cols=93 Identities=26% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ceeeccCCCCceeEEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEEIELPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~D~Iv 194 (379)
..++.+||-+|+|+ |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+..... .+.++ .....+|+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHH-hCCCCCCEEE
Confidence 45889999998864 556666676 5776799999888 7777665 343211111000 00111 1124589888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-. .+ . ...+....+.|+++|+++
T Consensus 193 d~-~G-------~-~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 193 EF-SG-------A-TAAVRACLESLDVGGTAV 215 (280)
T ss_pred EC-CC-------C-hHHHHHHHHHhcCCCEEE
Confidence 42 21 1 234555668899999987
No 317
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.75 E-value=1.7 Score=41.50 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc----------CC-------CEEEEEecHH--HHHHHHHH------HHHcCCCCcEEE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA----------GA-------AHVYAVECSQ--MANMAKQI------VEANGFSNVITV 175 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~----------g~-------~~v~~vD~s~--~~~~a~~~------~~~~~~~~~i~~ 175 (379)
...-+|+|+||..|..++.+... .. -+|+--|.-. .-.+.+.. ....+ +--+.-
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEEe
Confidence 44458999999999887766431 01 2677777533 22222211 11111 011333
Q ss_pred EEcceeeccCCCCceeEEEEecCccccCCh------------------------------------hhHHHHHHHHHhcc
Q 016992 176 LKGKIEEIELPVTKVDIIISEWMGYFLLFE------------------------------------NMLNTVLYARDKWL 219 (379)
Q Consensus 176 ~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~------------------------------------~~~~~~l~~~~~~L 219 (379)
+.+.+..--+|.++.|+++|....+.|... .++..+|+...+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 455665555778999999986433333210 23357788888999
Q ss_pred cCCEEEE
Q 016992 220 VDDGIVL 226 (379)
Q Consensus 220 kpgG~li 226 (379)
+|||+++
T Consensus 174 v~GG~mv 180 (334)
T PF03492_consen 174 VPGGRMV 180 (334)
T ss_dssp EEEEEEE
T ss_pred ccCcEEE
Confidence 9999998
No 318
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.71 E-value=1.3 Score=39.05 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=65.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCc----hHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-e
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTG----ILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-E 181 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G----~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~ 181 (379)
.|+.++. .-..-+.+++++|+.| .+++.+|. .-.+++++|-..+ .+...++.+...++.+.++|+.++. +
T Consensus 31 EfISAlA---AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 31 EFISALA---AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHh---ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 4545554 3345568888866644 23333333 3235888888887 7777788888888877789999885 3
Q ss_pred eccCCCCceeEEEEecCccccCChhhHH-HHHHHHHhcccCCEEEE
Q 016992 182 EIELPVTKVDIIISEWMGYFLLFENMLN-TVLYARDKWLVDDGIVL 226 (379)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~~~~~~-~~l~~~~~~LkpgG~li 226 (379)
++......+|+++.+. -. .+.. .+|+.+. +.|.|-++
T Consensus 108 ~~~~~~~~iDF~vVDc---~~---~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 108 EVMPGLKGIDFVVVDC---KR---EDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred HHHhhccCCCEEEEeC---Cc---hhHHHHHHHHhc--cCCCceEE
Confidence 4433346789999653 11 2333 5665442 45556555
No 319
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.60 E-value=0.59 Score=46.62 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---------------
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--------------- 186 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------------- 186 (379)
..+++|+-||.|++++.+-..|...|.++|+++ +.+.-+.+.... .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 458999999999999999888887889999999 777666554211 1134455666665421
Q ss_pred --CCceeEEEEecCccccC
Q 016992 187 --VTKVDIIISEWMGYFLL 203 (379)
Q Consensus 187 --~~~~D~Iv~~~~~~~l~ 203 (379)
...+|+++..++|..+.
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred ccCCCCCEEEEcCCCCccc
Confidence 13589999887766543
No 320
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.36 E-value=0.39 Score=45.89 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHHc--CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC--CCceeE
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAKA--GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP--VTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~~--g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~D~ 192 (379)
+...+|..|+|.+|..|..+.++|.. ...+++|.|.+. -++..++.+...|.+ .+..+.+|+...+.+ -+.+-.
T Consensus 209 l~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 209 LDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred cCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCcccccceeE
Confidence 55678899999999999999999883 357999999999 999999999999985 477779998875322 244566
Q ss_pred EEEecCcc
Q 016992 193 IISEWMGY 200 (379)
Q Consensus 193 Iv~~~~~~ 200 (379)
|++++-++
T Consensus 288 iL~DpscS 295 (413)
T KOG2360|consen 288 ILVDPSCS 295 (413)
T ss_pred EEeCCCCC
Confidence 77776443
No 321
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=92.31 E-value=1.1 Score=43.51 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcccCCEEEEe
Q 016992 208 LNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 208 ~~~~l~~~~~~LkpgG~lip 227 (379)
+..+|+...+-|.|||.++.
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred HHHHHHHHHHHhccCcEEEE
Confidence 45778888899999999983
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.26 E-value=0.47 Score=45.50 Aligned_cols=91 Identities=24% Similarity=0.463 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEec---HH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVEC---SQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~---s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~I 193 (379)
..+|.+||-+|+|. |.++..+++ .|+ +|++++. ++ ..+.+++ .|.. .+.....+..+... ...+|+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~-~~~~d~v 242 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKL-VGEFDLI 242 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhh-cCCCCEE
Confidence 45788999999874 666777777 576 7999986 55 6665543 4431 12111111111111 2468988
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+-. .+ . ...+....+.|++||.++
T Consensus 243 id~-~g-------~-~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 243 IEA-TG-------V-PPLAFEALPALAPNGVVI 266 (355)
T ss_pred EEC-cC-------C-HHHHHHHHHHccCCcEEE
Confidence 842 21 1 135566678899999987
No 323
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.11 E-value=0.35 Score=42.64 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=56.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 111 QNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 111 ~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
.+.|.+........-|.+||.|+|+++..+..+|..+...||.+. ++.-.+-..+... .+..++++|+..+.
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 344566566677789999999999999999999988999999998 8877766555443 46888889886653
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.09 E-value=0.57 Score=44.71 Aligned_cols=44 Identities=36% Similarity=0.380 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV 164 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~ 164 (379)
..-..|+|+|+|.|.++.+++-.-.-.|+|||-|. ..+.|++.-
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHH
Confidence 44568999999999999999884234999999999 777776543
No 325
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.04 E-value=0.41 Score=44.54 Aligned_cols=73 Identities=25% Similarity=0.245 Sum_probs=51.3
Q ss_pred EEEEcCCCchHHHHH-HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC-------CCCceeEEEEe
Q 016992 126 VLDVGAGTGILSLFC-AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL-------PVTKVDIIISE 196 (379)
Q Consensus 126 VLDlGcG~G~~~~~l-a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~Iv~~ 196 (379)
=+|||.|+-.+--.+ ++.......++|+.+ .+..|..++.++++++.|.+++....+..+ ++..||.+.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 378887764332222 222235789999999 999999999999999989988875533221 13458999998
Q ss_pred cC
Q 016992 197 WM 198 (379)
Q Consensus 197 ~~ 198 (379)
++
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 75
No 326
>PLN02740 Alcohol dehydrogenase-like
Probab=92.02 E-value=0.91 Score=44.11 Aligned_cols=96 Identities=22% Similarity=0.231 Sum_probs=56.2
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ceee-c-cCCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (379)
....+|.+||-+|+|. |.++..+|+ .|+.+|+++|.++ .++.+++ .|....+..... +..+ + .+..+.+
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHhCCCC
Confidence 4567899999999864 556666677 5776899999998 8888754 343211111110 1111 1 0111368
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+-. .+ . ...+......+++| |.++
T Consensus 270 dvvid~-~G-------~-~~~~~~a~~~~~~g~G~~v 297 (381)
T PLN02740 270 DYSFEC-AG-------N-VEVLREAFLSTHDGWGLTV 297 (381)
T ss_pred CEEEEC-CC-------C-hHHHHHHHHhhhcCCCEEE
Confidence 988842 21 1 13444555678886 8766
No 327
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.01 E-value=0.72 Score=39.86 Aligned_cols=98 Identities=24% Similarity=0.279 Sum_probs=61.9
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeeccC
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 185 (379)
+|.-||+|+ | .++..++..|. .|+.+|.++ .++.+++.+... + + -.++++. .|..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence 467789987 3 55666677776 999999999 988887777541 1 1 1345533 344444
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+|+=.. .........++.++.+.+.|+..|.-++.++
T Consensus 77 --~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 3589888432 2333566789999999999998887544443
No 328
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.51 E-value=0.8 Score=41.85 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCchHHHHHHHc-C--------CCEEEEEecHH-HHHHHHHHHHHc-----CCCCcEEEEEcceeeccCCC
Q 016992 123 DKVVLDVGAGTGILSLFCAKA-G--------AAHVYAVECSQ-MANMAKQIVEAN-----GFSNVITVLKGKIEEIELPV 187 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~-g--------~~~v~~vD~s~-~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 187 (379)
.-+|+|+|+|+|.++..+.+. . ..+++.||.|+ +.+.-++.+... .+..+|.+.. +..+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~-~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLD-DLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEES-SGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhh-hhhccc---
Confidence 469999999999999988772 1 24899999999 888877776542 2334577732 433332
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
..-+|+++=
T Consensus 95 -~~~~iiaNE 103 (252)
T PF02636_consen 95 -FPGFIIANE 103 (252)
T ss_dssp -CCEEEEEES
T ss_pred -CCEEEEEee
Confidence 346666643
No 329
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.35 E-value=0.47 Score=45.33 Aligned_cols=98 Identities=23% Similarity=0.235 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....++.+||-.|+|+ |.++..+|+ .|+..|++++.++ ..+.+++ .|...-+.....+...+. .....+|.
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3456789999998764 556666666 5776689999888 7776643 343111111111111110 12245774
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
++.+..+. ...+....+.|++||.++.
T Consensus 232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 232 LILETAGV--------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEE
Confidence 44343321 2355666688899999873
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.30 E-value=0.44 Score=45.27 Aligned_cols=96 Identities=26% Similarity=0.231 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
....+|.+||-+|+|. |.++..+++ .|+++|++++.++ ..+.+++ .|...-+.....+...+. .....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4567799999998753 455556666 5776699999988 7777654 343211111111111110 12246999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+-. .+ . ...+....+.|+++|.++
T Consensus 235 vid~-~g-------~-~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIEC-SG-------N-TAARRLALEAVRPWGRLV 259 (339)
T ss_pred EEEC-CC-------C-HHHHHHHHHHhhcCCEEE
Confidence 9842 11 1 223445557899999987
No 331
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.15 E-value=0.61 Score=42.19 Aligned_cols=95 Identities=29% Similarity=0.354 Sum_probs=56.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D~ 192 (379)
....++.+||..|+|+ |.....+++ .| .+|++++.++ ..+.+++. +....+.....+... + ......+|+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 3347889999999986 666666666 45 5999999988 77766542 221111111101100 0 112357999
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
++... + . ...+....+.|+++|.++
T Consensus 205 vi~~~-~----~----~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 205 VIDAV-G----G----PETLAQALRLLRPGGRIV 229 (271)
T ss_pred EEECC-C----C----HHHHHHHHHhcccCCEEE
Confidence 98532 1 1 134555667889999987
No 332
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.06 E-value=0.72 Score=48.45 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHH-c-------C-----CCEEEEEecHH-HHHH--------------HHHHHHH-----cC
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-A-------G-----AAHVYAVECSQ-MANM--------------AKQIVEA-----NG 168 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~-------g-----~~~v~~vD~s~-~~~~--------------a~~~~~~-----~~ 168 (379)
+.-+|+|+|=|+|...+.+.+ . + .-+++++|..+ ..+. +++.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 346899999999975554442 1 1 23899999754 2222 2222211 12
Q ss_pred C------CC--cEEEEEcceeeccCC-CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 169 F------SN--VITVLKGKIEEIELP-VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 169 ~------~~--~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+ .+ .+++..+|+.+.-.. ...||+++.+.+.-.-.-+-.-..++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 01 345667787654211 2569999987643222111122689999999999999998
No 333
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.04 E-value=0.48 Score=44.17 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=37.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
....+|.+|.-+|+|. |+...+-|+ +|+.+++|||+++ ..+.|++.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 4568999999999997 555556666 6999999999999 88888763
No 334
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.02 E-value=0.63 Score=37.36 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=52.1
Q ss_pred CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc------CCCCceeEEEEecCccccC
Q 016992 132 GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE------LPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 132 G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~~D~Iv~~~~~~~l~ 203 (379)
|.|..+..+|+ .| .+|+++|.++ ..+.+++ .|.. .++..+-.++. .+...+|+|+-. .+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEES-SS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEe-cC----
Confidence 45888888998 57 7999999999 8888765 3421 22322222111 223579999842 21
Q ss_pred ChhhHHHHHHHHHhcccCCEEEEec
Q 016992 204 FENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
. ...++....+|+++|.++..
T Consensus 68 ~----~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 S----GDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp S----HHHHHHHHHHEEEEEEEEEE
T ss_pred c----HHHHHHHHHHhccCCEEEEE
Confidence 1 35667777899999998843
No 335
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.90 E-value=1.8 Score=41.12 Aligned_cols=88 Identities=17% Similarity=0.035 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ ..+.+++ .|... ++. ..+. ..+.+|+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~--~~~~~d~~i 228 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT--PPEPLDAAI 228 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc--CcccceEEE
Confidence 4567899999999753 455566666 576 799999988 7776655 44421 111 1111 124578765
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
-. ... ...+....+.|++||+++
T Consensus 229 ~~---~~~------~~~~~~~~~~l~~~G~~v 251 (329)
T TIGR02822 229 LF---APA------GGLVPPALEALDRGGVLA 251 (329)
T ss_pred EC---CCc------HHHHHHHHHhhCCCcEEE
Confidence 31 111 134666678899999987
No 336
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.89 E-value=0.57 Score=44.19 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=40.4
Q ss_pred hccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHH
Q 016992 116 QNKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~ 163 (379)
......+|.+|.-+|||. |..++.-|+ .|+.+|++||+++ .+++|++.
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 335678899999999986 777777777 6999999999999 99998863
No 337
>PLN02827 Alcohol dehydrogenase-like
Probab=90.84 E-value=1.1 Score=43.60 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=56.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--cceee-cc-CCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-IE-LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~~-~~~~~~ 190 (379)
....+|.+||-.|+|+ |.++..+|+ .|+..|+++|.++ ..+.|++ .|...-+.... .+..+ +. +..+.+
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998764 555666666 5777799999888 7777644 34421111111 01111 10 111368
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+-. .+ . ...+....+.|++| |.++
T Consensus 265 d~vid~-~G-------~-~~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 265 DYSFEC-VG-------D-TGIATTALQSCSDGWGLTV 292 (378)
T ss_pred CEEEEC-CC-------C-hHHHHHHHHhhccCCCEEE
Confidence 988842 22 1 12344556778998 9987
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.55 E-value=1.6 Score=41.41 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---eeeccCCCCceeEEEE
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEIELPVTKVDIIIS 195 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~~D~Iv~ 195 (379)
++.+||..|||. |..+..+++ .|..+|++++.++ ..+.+++ .+.. .++..+ ...+......+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999988765 556666666 5766899999888 7776554 2331 122111 1112111245899985
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. + . ...+....+.|+++|.++
T Consensus 238 ~~-g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 AS-G----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred CC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 31 1 0 123556678899999987
No 339
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.45 E-value=1.2 Score=41.92 Aligned_cols=97 Identities=23% Similarity=0.243 Sum_probs=58.3
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCcee
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKVD 191 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~D 191 (379)
.....++.+||..|+|. |..+..+|+ .|. +|++++.++ ..+.+++ .|....+.....+... + ......+|
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 34467788999988763 677777777 565 799999988 8777754 3432111111001000 0 12235789
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++... + ....+....+.|+++|.++.
T Consensus 235 ~vid~~-g--------~~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 235 VIFDFV-G--------TQPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred EEEECC-C--------CHHHHHHHHHHhhcCCEEEE
Confidence 888421 1 02356667789999999873
No 340
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.34 E-value=4.4 Score=34.36 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeec---c-
Q 016992 109 SYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEI---E- 184 (379)
Q Consensus 109 ~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---~- 184 (379)
.+.+.+.+. ...+.+|+-|||=+-...+.-...+..+++..|.+. ++...+ ++ .|+.-|.... +
T Consensus 14 ~l~~~l~~~--~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~ 81 (162)
T PF10237_consen 14 FLARELLDG--ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPE 81 (162)
T ss_pred HHHHHHHHh--cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhh
Confidence 334444432 235679999999774433333123456899999986 222222 22 3444444321 1
Q ss_pred -CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 185 -LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 185 -~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
+ .++||+||++++ + ..+..+.+....+..++|+++.++..
T Consensus 82 ~l-~~~~d~vv~DPP-F--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 82 EL-KGKFDVVVIDPP-F--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hc-CCCceEEEECCC-C--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 2 379999999986 2 44566667777777788998888843
No 341
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.32 E-value=0.043 Score=45.52 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEEEEcceeeccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 173 ITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 173 i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+.+++--..+..+.++++|+|+++-+..++.. .....+++++.++|||||++-.+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 44444444445677899999998755444432 3446889999999999999875433
No 342
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=8.9 Score=34.74 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc--CCCCceeE
Q 016992 121 FKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE--LPVTKVDI 192 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~~----g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~D~ 192 (379)
..+...+|+|+|+...+..+... | ..+++.+|+|. .+....+.+...-..-.|.-+++|.+.-- ++... --
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~R 155 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGG-RR 155 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCC-eE
Confidence 45779999999998777766552 3 36899999999 66654444433222223666777765421 22122 22
Q ss_pred EEEecCccccC--ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 193 IISEWMGYFLL--FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 193 Iv~~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+++- +++.+. ..+....++..+...|+||-.++.
T Consensus 156 l~~f-lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVF-LGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEE-ecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 3321 233332 245567889999999999988773
No 343
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.29 E-value=2.2 Score=41.85 Aligned_cols=84 Identities=30% Similarity=0.309 Sum_probs=51.5
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|. .+. +..+. . ...|+||+.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~----~G~----~v~--~leea-l--~~aDVVIta 257 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAM----DGF----RVM--TMEEA-A--KIGDIFITA 257 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHh----cCC----EeC--CHHHH-H--hcCCEEEEC
Confidence 36899999999997 544444455 566 899999988 5433332 232 222 22222 2 457998863
Q ss_pred cCccccCChhhHHHHHH-HHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLY-ARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~-~~~~~LkpgG~li 226 (379)
. +. ..++. .....+|+|++++
T Consensus 258 T--------G~-~~vI~~~~~~~mK~Gaili 279 (406)
T TIGR00936 258 T--------GN-KDVIRGEHFENMKDGAIVA 279 (406)
T ss_pred C--------CC-HHHHHHHHHhcCCCCcEEE
Confidence 2 12 23333 4667899999887
No 344
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.19 E-value=1.6 Score=37.13 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=59.6
Q ss_pred EEcCCCchHHHHHHH-cC-CCEEEEE--ecHH-HHHH---HHHHHHHcCCCCcEEEEEcceeeccC----CCCceeEEEE
Q 016992 128 DVGAGTGILSLFCAK-AG-AAHVYAV--ECSQ-MANM---AKQIVEANGFSNVITVLKGKIEEIEL----PVTKVDIIIS 195 (379)
Q Consensus 128 DlGcG~G~~~~~la~-~g-~~~v~~v--D~s~-~~~~---a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~Iv~ 195 (379)
=||=|.=.++..+++ .+ ...++|. |..+ ..+. +..+++...-.+.......|+..+.. ...+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 356666677777777 35 5566654 4444 3322 33444443221223345557777652 3578999998
Q ss_pred ecCcccc----------CChhhHHHHHHHHHhcccCCEEEEe
Q 016992 196 EWMGYFL----------LFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 196 ~~~~~~l----------~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+.+..+. .+...+..++..+.++|+++|.+..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 8653331 1123457888899999999999873
No 345
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.02 E-value=2.3 Score=41.98 Aligned_cols=83 Identities=27% Similarity=0.300 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..|++|+-+|+|. |......++ .|+ +|+.+|.++ ....+.. .|. .+. ++.+. + ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea-l--~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA-A--ELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH-H--hCCCEEEECC
Confidence 4899999999985 433333333 576 899999988 5443322 232 222 22222 1 4689998632
Q ss_pred CccccCChhhHHHHHH-HHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLY-ARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~-~~~~~LkpgG~li 226 (379)
+. ..++. .....+|+|++++
T Consensus 276 --------G~-~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 276 --------GN-KDVITAEHMEAMKDGAILA 296 (425)
T ss_pred --------CC-HHHHHHHHHhcCCCCCEEE
Confidence 12 22343 5668899999887
No 346
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=88.86 E-value=1.6 Score=37.76 Aligned_cols=110 Identities=13% Similarity=0.227 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhccCCCCCC-EEEEEcCCCchHHHHHHHc-CCCEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEcce
Q 016992 105 VRTKSYQNVIYQNKFLFKDK-VVLDVGAGTGILSLFCAKA-GAAHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (379)
Q Consensus 105 ~r~~~~~~~i~~~~~~~~~~-~VLDlGcG~G~~~~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (379)
.|+..+...+.+.....++. .|+.||||-=.....+... +..+++-+|..++++.-++.+...+. +.+.+++..|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 45555555555544333444 8999999988777777763 35588888887766666666666532 12345788888
Q ss_pred eecc---------CCCCceeEEEEecCccccCChhhHHHHHHHH
Q 016992 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYAR 215 (379)
Q Consensus 181 ~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~ 215 (379)
.+.. +.....-+++++.+..++. +.....+++.+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 7532 2235678888888766553 34455555543
No 347
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.85 E-value=1.6 Score=40.11 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=47.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHHHc------CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA------GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE 184 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~------g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~ 184 (379)
..+.+...+.++..++|+|||.|.++..+++. +...++.||... -.+ +...+........++=+..|+.++.
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccc
Confidence 33444444567789999999999999999983 235899999866 332 2222333221123666777888876
Q ss_pred C
Q 016992 185 L 185 (379)
Q Consensus 185 ~ 185 (379)
+
T Consensus 87 l 87 (259)
T PF05206_consen 87 L 87 (259)
T ss_pred h
Confidence 4
No 348
>PLN02494 adenosylhomocysteinase
Probab=88.65 E-value=1.5 Score=43.52 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=54.2
Q ss_pred HHHHHhccC-CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 111 QNVIYQNKF-LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 111 ~~~i~~~~~-~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
.+.|.+... ...|++|+-+|+|. |......++ .|+ +|+++|.++ ....|.. .|+ .++ ++.+. +
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H-
Confidence 344444332 25799999999996 433333334 566 899999988 5444322 232 222 22222 1
Q ss_pred CCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 ~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...|+|+... +....+.......+|+||+++
T Consensus 308 -~~ADVVI~tT--------Gt~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 308 -SEADIFVTTT--------GNKDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred -hhCCEEEECC--------CCccchHHHHHhcCCCCCEEE
Confidence 4579998621 111222355567899999988
No 349
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.96 E-value=0.68 Score=45.32 Aligned_cols=101 Identities=25% Similarity=0.178 Sum_probs=58.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---ceee-cc--CCCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---KIEE-IE--LPVT 188 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~~-~~--~~~~ 188 (379)
....++.+||-.|+|. |.++..+|+ .|+..|+++|.++ .++.|++ .|. + .+... +..+ +. ....
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga-~--~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC-E--TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC-e--EEecCCcccHHHHHHHHcCCC
Confidence 4467888998888864 566666777 5887788888888 7777765 343 1 12211 1111 11 1224
Q ss_pred ceeEEEEecCcccc------CChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFL------LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l------~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+++-. .+.-- .........+....+++++||.++
T Consensus 254 g~Dvvid~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 254 EVDCAVDC-VGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred CCcEEEEC-CCCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 68988842 22100 000112246677778999999987
No 350
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.93 E-value=0.24 Score=38.74 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred ceeEEEEecCcc--cc-CChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGY--FL-LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~--~l-~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+||+|+|-.+.- +| .+..-+..+++.+...|+|||.+|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI 41 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE
Confidence 489999843211 11 123346789999999999999998
No 351
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.86 E-value=1.9 Score=41.31 Aligned_cols=95 Identities=21% Similarity=0.177 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEcC-C-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceee-c-cCCCCce
Q 016992 118 KFLFKDKVVLDVGA-G-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGc-G-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~~ 190 (379)
....+|.+||-.|+ | .|.++..+|+ .|+ +|++++.++ ..+.+++ ..|...-+..... +..+ + ......+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCCc
Confidence 45678999999998 3 5777788888 576 799999888 7666642 2344211211111 1111 1 0112468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+-. ++ . ..+....+.|++||.++
T Consensus 230 D~v~d~-vG-------~--~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 230 DIYFDN-VG-------G--DMLDAALLNMKIHGRIA 255 (348)
T ss_pred EEEEEC-CC-------H--HHHHHHHHHhccCCEEE
Confidence 988842 21 1 24556668899999987
No 352
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.63 E-value=4.2 Score=38.25 Aligned_cols=96 Identities=17% Similarity=0.059 Sum_probs=57.4
Q ss_pred hccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceeec--cCCCC
Q 016992 116 QNKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEEI--ELPVT 188 (379)
Q Consensus 116 ~~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~ 188 (379)
......+|.+||-.|+ |.|..+..+|+ .|+ +|++++.++ ..+.+++ .|...-+..... +..+. .....
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCC
Confidence 3355678999999985 35677777788 566 899999888 7776643 444211111110 11110 01124
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+|+- .++ . ..+....+.|+++|.++
T Consensus 207 gvdvv~d-~~G-------~--~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 207 GYDCYFD-NVG-------G--EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred CeEEEEE-CCC-------H--HHHHHHHHHhCcCcEEE
Confidence 6999884 221 1 12355668899999988
No 353
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.58 E-value=2.7 Score=37.01 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
.+.+||-+|||. | ..+..+++.|.++++.+|.+ . .++.+.+++....-.-+++.+...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 457899999995 3 55667777899999999977 2 344455555543321234444433
Q ss_pred eeeccC--CCCceeEEEEe
Q 016992 180 IEEIEL--PVTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~--~~~~~D~Iv~~ 196 (379)
+....+ ....+|+|+..
T Consensus 100 i~~~~~~~~~~~~D~Vi~~ 118 (202)
T TIGR02356 100 VTAENLELLINNVDLVLDC 118 (202)
T ss_pred CCHHHHHHHHhCCCEEEEC
Confidence 322111 12578999864
No 354
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.32 E-value=1.1 Score=37.69 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHH-HHHHHHHHcCCCCcEE-EEEccee-eccCCCCceeEEEEecC
Q 016992 123 DKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MAN-MAKQIVEANGFSNVIT-VLKGKIE-EIELPVTKVDIIISEWM 198 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~-~a~~~~~~~~~~~~i~-~~~~d~~-~~~~~~~~~D~Iv~~~~ 198 (379)
|++++-+|+..=..-..+.+.|+++|..||.++ -+. ..+ +++. +...|.. ++..-.++||++.|-..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 678899999876665666668999999999876 221 111 1111 1111211 11111377898877221
Q ss_pred -c-cccC-------ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 -G-YFLL-------FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 -~-~~l~-------~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. .+|. ..+++ ..+..+.++|||||.++.
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 0 1111 11233 556678899999999883
No 355
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.17 E-value=2.7 Score=40.11 Aligned_cols=44 Identities=34% Similarity=0.364 Sum_probs=34.2
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHH
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQ 162 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~ 162 (379)
....+|.+||-.|+|. |..+..+|+ .|+ +|+++|.++ .++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567899999999965 666667777 576 799999998 8777754
No 356
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.91 E-value=1.2 Score=42.57 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=57.5
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee-ec-c-CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE-EI-E-LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~-~~-~-~~~~~~D 191 (379)
....++.+||-.|+|. |..+..+|+ .|...|+++|.++ ..+.+++ .|....+.....+.. .+ . .....+|
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 4567889999998763 555666677 5777899999988 7777664 343211111111110 01 0 1224689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+.. .+ + ...+....+.|+++|.++
T Consensus 238 ~vld~-~g----~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 238 AVIIA-GG----G----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEEEC-CC----C----HHHHHHHHHHhhcCCEEE
Confidence 88842 11 1 234566678899999987
No 357
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.85 E-value=4.4 Score=38.48 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=60.2
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCCC-----CcEEEEEcceeeccCCCC
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGFS-----NVITVLKGKIEEIELPVT 188 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~~~~~~ 188 (379)
++|--||+|+ ..++..++..|. .|+..|.++ .++.++..+.. .++. .++++.. +..+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5789999996 355666677776 999999998 77766554431 2211 2233322 22211 14
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..|+|+-.. .........++..+.+.++|+.+|--+
T Consensus 83 ~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 83 DADFIQESA----PEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 679888542 333355678888999999999855433
No 358
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.77 E-value=4.2 Score=39.95 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.1
Q ss_pred cCCCCCCEEEEEc-CC-CchHHHHHHHc---CCCEEEEEecHH-HHHHHHHH
Q 016992 118 KFLFKDKVVLDVG-AG-TGILSLFCAKA---GAAHVYAVECSQ-MANMAKQI 163 (379)
Q Consensus 118 ~~~~~~~~VLDlG-cG-~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~ 163 (379)
....+|.+||-+| +| .|.++..+|+. |+.+|+++|.++ .++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3456788999997 44 47777777774 446899999999 88888774
No 359
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.56 E-value=2.9 Score=40.27 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HH-HHHHHHHHHcCCCCcEEEEE-cceeeccCCCCceeEEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MA-NMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIII 194 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~-~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv 194 (379)
..+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ .. ..++ ..|.. .++. .+...+....+.+|+|+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN----RLGAD---SFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH----hCCCc---EEEcCCCHHHHHhhcCCCCEEE
Confidence 45788999999874 666667777 566 788888776 33 2322 34431 1221 11111111113589888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
- ..+ . ...+....+.|++||.++
T Consensus 253 d-~~g-------~-~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 253 D-TVS-------A-VHALGPLLGLLKVNGKLI 275 (360)
T ss_pred E-CCC-------C-HHHHHHHHHHhcCCcEEE
Confidence 3 221 1 224555668899999987
No 360
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.41 E-value=0.67 Score=45.74 Aligned_cols=104 Identities=17% Similarity=0.077 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec-------cCCCCceeE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI-------ELPVTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~D~ 192 (379)
.+..+|-+|-|.|.+...+-. .+..++++|++.+ |++.|++++.-..- ++..++-.|..+. ...+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 355789999999999888766 5667999999999 99999988743221 1223333332221 113467999
Q ss_pred EEEecCc---cccCC---hhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMG---YFLLF---ENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~---~~l~~---~~~~~~~l~~~~~~LkpgG~li 226 (379)
+..+.=+ +++.- .-..+.++..+...|.|-|.++
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~ 413 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFI 413 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEE
Confidence 9976311 11110 0112577888889999999987
No 361
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.34 E-value=3.1 Score=38.61 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=56.2
Q ss_pred CCCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------C
Q 016992 120 LFKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------L 185 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~ 185 (379)
...|..||-=|.|.| .++..+|+.|+ +++..|++. -.....+.+++.| ++....+|+.+.. -
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 356889999999998 56777888887 999999998 6666666666665 5788888887643 1
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
+-+.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 236789999863
No 362
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.09 E-value=0.97 Score=43.59 Aligned_cols=93 Identities=25% Similarity=0.312 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee----cc-CCCCc
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~ 189 (379)
....++.+||-.|+|. |.++..+|+ .|...|+++|.++ ..+.+++ .|.. .++..+-.+ +. .....
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHhCCC
Confidence 3456788999998754 566666777 5877899999998 7776654 2321 222211111 10 11256
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+-. .+. ...+....+.|+++|.++
T Consensus 255 ~d~vld~-~g~--------~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDT-TGV--------PAVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEEC-CCC--------cHHHHHHHHHhccCCEEE
Confidence 8988842 111 123556668889999987
No 363
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.05 E-value=7.2 Score=34.27 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH---H-H---------------HHHHHHHHHHcCCCCcEEEEEcce
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS---Q-M---------------ANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s---~-~---------------~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
...+|+-+|||. | ..+..+++.|.++++.+|.+ . . .+.+++.+.+..-.-+++.+..++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i 99 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI 99 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence 456899999985 3 56777788898899999987 2 1 122333333322212344444443
Q ss_pred eeccCC--CCceeEEEEecCccccCChhhHHHHHHHHHhcccC
Q 016992 181 EEIELP--VTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVD 221 (379)
Q Consensus 181 ~~~~~~--~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkp 221 (379)
..-.+. ...+|+|+.. + .+......+++.+.+..+.
T Consensus 100 ~~~~~~~~~~~~DlVi~a-~----Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 100 TEENIDKFFKDADIVCEA-F----DNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred CHhHHHHHhcCCCEEEEC-C----CCHHHHHHHHHHHHHHcCC
Confidence 321111 2468999853 2 2223344556666666554
No 364
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.82 E-value=4.1 Score=37.90 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=57.2
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (379)
++|.-||+|. +.++..+++.|. +|+.+|.++ .++.+.+.+... + + ..++++. .+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA- 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh-
Confidence 3688899985 245555666665 899999999 888776543221 1 0 0112222 122211
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
-...|+|+.... ........++..+.+.++|+..+...+.+
T Consensus 79 --~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 --VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred --hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 145799985432 11233456677788888888766544433
No 365
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.79 E-value=4.4 Score=31.72 Aligned_cols=82 Identities=16% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHc---CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEEEEecCcccc
Q 016992 131 AGTGILSLFCAKA---GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDIIISEWMGYFL 202 (379)
Q Consensus 131 cG~G~~~~~la~~---g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~Iv~~~~~~~l 202 (379)
||.|.++..+++. +...|+.+|.++ .++.+++. .+.++.+|..+.. ..-.++|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC----
Confidence 4556677776662 334899999999 77766542 2679999988754 23467898886431
Q ss_pred CChhhHHHHHHHHHhcccCCEEEE
Q 016992 203 LFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.......+....+-+.|...++
T Consensus 72 --~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 72 --DDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp --SHHHHHHHHHHHHHHTTTSEEE
T ss_pred --CHHHHHHHHHHHHHHCCCCeEE
Confidence 1222333334446667776665
No 366
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.72 E-value=2.2 Score=40.90 Aligned_cols=75 Identities=28% Similarity=0.287 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
.+.+||-+|||. | .++..+++.|.++++.+|.+. .++.|++.+.+..-.-+|+.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999985 3 556677788989999999752 3455556666544323355565
Q ss_pred cceeeccCC--CCceeEEEEe
Q 016992 178 GKIEEIELP--VTKVDIIISE 196 (379)
Q Consensus 178 ~d~~~~~~~--~~~~D~Iv~~ 196 (379)
.++....+. ...+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 554321111 2568999864
No 367
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.61 E-value=6.7 Score=36.55 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=56.7
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc----------CC---------CCcEEEEEccee
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN----------GF---------SNVITVLKGKIE 181 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~----------~~---------~~~i~~~~~d~~ 181 (379)
++|.-||+|. +.++..++..|. +|+.+|.++ .++.+++.+... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 245556666776 899999999 888766544331 11 0112221 1221
Q ss_pred eccCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 182 EIELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 182 ~~~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. ....|+|+.... ........++..+.+.++|+..++
T Consensus 82 ~----~~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 145798885432 222345677888888888888766
No 368
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.43 E-value=8.9 Score=35.49 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=59.2
Q ss_pred EEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHH-------HHcC-CC--------CcEEEEEcceeeccC
Q 016992 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIV-------EANG-FS--------NVITVLKGKIEEIEL 185 (379)
Q Consensus 125 ~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~-------~~~~-~~--------~~i~~~~~d~~~~~~ 185 (379)
+|--||+|. +.++..+++.|. +|+++|.++ .++.+++.+ .+.| +. .++++. .|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 578889985 456666677776 899999999 886655332 2222 11 123322 23222
Q ss_pred CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 186 PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 186 ~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
....|+|+-.. .........++..+.+.++|+..+...+..
T Consensus 80 -~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 -LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred -hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 15679988532 111233458888898999999887654444
No 369
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.37 E-value=5.6 Score=37.00 Aligned_cols=94 Identities=21% Similarity=0.142 Sum_probs=56.8
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc--------CCC---------CcEEEEEcceeec
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN--------GFS---------NVITVLKGKIEEI 183 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~ 183 (379)
.+|.-||+|.- .++..+++.|. +|+.+|.++ .++.+++.+... .+. .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 46888999863 44555566665 899999999 888876654211 110 223322 232221
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
....|+|+.... ........++..+...++++..+.
T Consensus 82 ---~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 ---VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred ---hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 146799986432 122345677888888888777664
No 370
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.35 E-value=8.1 Score=30.56 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=57.7
Q ss_pred CEEEEEcCCCc-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEecCccc
Q 016992 124 KVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISEWMGYF 201 (379)
Q Consensus 124 ~~VLDlGcG~G-~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~~~~~~ 201 (379)
.+|.++|.|-= ..+..+++.|. .|+++|+++. ++ + ..++++..|+.+-... -+..|+|.|-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a---~--~g~~~v~DDitnP~~~iY~~A~lIYSi----- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA---P--EGLRFVVDDITNPNISIYEGADLIYSI----- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC---c--ccceEEEccCCCccHHHhhCccceeec-----
Confidence 38999998863 44666777785 9999999872 11 1 2378999998876543 3567999873
Q ss_pred cCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.-.+.+...+-.+.+.++-.-.+.|-
T Consensus 78 -RpppEl~~~ildva~aVga~l~I~pL 103 (129)
T COG1255 78 -RPPPELQSAILDVAKAVGAPLYIKPL 103 (129)
T ss_pred -CCCHHHHHHHHHHHHhhCCCEEEEec
Confidence 22255555555666666665556543
No 371
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=85.33 E-value=3.8 Score=38.40 Aligned_cols=95 Identities=23% Similarity=0.164 Sum_probs=56.8
Q ss_pred ccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCce
Q 016992 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (379)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (379)
.....+|.+||-.|+ |.|..++.+|+ .|+ +|++++.++ ..+.+++ .|...-+.....+..+ + ......+
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCCc
Confidence 345678899999985 34667777777 566 799999888 7777654 3442111111111111 1 0112568
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. .+ . ..+....+.|+++|.++
T Consensus 213 d~vld~-~g-------~--~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 213 DCYFDN-VG-------G--EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred EEEEEC-CC-------H--HHHHHHHHhhccCCEEE
Confidence 988842 21 1 33456678899999987
No 372
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.25 E-value=5.5 Score=37.74 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc-ceee-c-cCCCCc
Q 016992 117 NKFLFKDKVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG-KIEE-I-ELPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 189 (379)
.....+|.+||-.|+ |.|..+..+|+ .|+ +|++++.++ ..+.+++. .|....+..... +..+ + ......
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~g 221 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNG 221 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCC
Confidence 345678999999997 34666777777 576 788888877 76666542 343211111111 1111 0 011256
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+- .++ . ..+....+.|+++|.++
T Consensus 222 vd~v~d-~~g-------~--~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 222 IDIYFD-NVG-------G--KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred cEEEEE-CCC-------H--HHHHHHHHHhccCcEEE
Confidence 899884 221 1 33556678899999987
No 373
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.17 E-value=9.5 Score=35.52 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=61.5
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CCC---------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GFS---------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~~~---------~~i~~~~~d~~~~~ 184 (379)
.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+++.+.+. |.- .++++ ..|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh-
Confidence 3788999996 355666677776 999999999 888876654321 110 12222 2233222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcc-cCCEEEEecCCc
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWL-VDDGIVLPDKAS 231 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lip~~~~ 231 (379)
...|+|+-.. .........++..+.+.+ +|+..+.-++.+
T Consensus 83 ---~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ---ADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ---CCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 5679988543 333355567788888888 788777644433
No 374
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.95 E-value=5.2 Score=35.51 Aligned_cols=74 Identities=22% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH-------------------HHHHHHHHHHHHcCCCCcEEEEEcce
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------QMANMAKQIVEANGFSNVITVLKGKI 180 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 180 (379)
...+|+-+|||. | .++..+++.|.++++.+|.+ ..++.+.+++.+..-.-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 456899999984 4 56777788899999999987 13445555565543323354454433
Q ss_pred eeccCC--CCceeEEEE
Q 016992 181 EEIELP--VTKVDIIIS 195 (379)
Q Consensus 181 ~~~~~~--~~~~D~Iv~ 195 (379)
...... -..+|+|+.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 321110 246899985
No 375
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.93 E-value=4.3 Score=43.00 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=66.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (379)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++... | + -.+|++.. |...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CHHH--
Confidence 4799999997 366666777776 999999999 888776665421 1 1 02233321 2211
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
-...|+||=.. .........++.++.++++|+.+|.-++.++-+
T Consensus 390 --~~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 390 --FDNVDIVVEAV----VENPKVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred --hcCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 25689888432 333456679999999999999888755554433
No 376
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.91 E-value=4 Score=38.72 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCCC--CEEEEEcC--CCchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-cCCCCce
Q 016992 119 FLFKD--KVVLDVGA--GTGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-ELPVTKV 190 (379)
Q Consensus 119 ~~~~~--~~VLDlGc--G~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~ 190 (379)
...++ .+||-.|+ |.|..+..+|+ .|+.+|++++.++ ..+.+++. .|....+.....+..+ + .+....+
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 34555 89999986 35677777777 5766899999887 76666542 3432111111111111 0 0112569
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. ++ . ..+....+.|+++|.++
T Consensus 226 d~vid~-~g-------~--~~~~~~~~~l~~~G~iv 251 (345)
T cd08293 226 DVYFDN-VG-------G--EISDTVISQMNENSHII 251 (345)
T ss_pred eEEEEC-CC-------c--HHHHHHHHHhccCCEEE
Confidence 999842 21 1 12355668899999988
No 377
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.81 E-value=3.6 Score=43.80 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=67.3
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-CC--------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-FS--------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 184 (379)
++|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+++... | +. .+|++.. |...+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~- 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DYSGF- 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CHHHh-
Confidence 4799999997 356666777776 999999999 988876666432 1 11 2343331 22222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
...|+||=. .........+++.++.++++|+.+|.-++.++-+
T Consensus 413 ---~~aDlViEA----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 413 ---KNADMVIEA----VFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred ---ccCCeehhh----ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 567988732 2344466679999999999999988755554433
No 378
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.74 E-value=5.1 Score=42.53 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=66.8
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 184 (379)
++|.-||+|+ ..++..+|..|. .|+.+|.++ .++.+.+.+... | + -.+|++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 4799999998 366667777876 999999999 888776655321 1 1 1234433 222222
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
...|+||=.. .........++..+.+.++|+.+|.-++.++-
T Consensus 391 ---~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 391 ---ERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred ---cCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 5689888432 33335667999999999999988875555443
No 379
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.70 E-value=8.4 Score=36.83 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=52.9
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEccee----ec-c-CCCCce
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIE----EI-E-LPVTKV 190 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~----~~-~-~~~~~~ 190 (379)
..++.+||-.|+|. |..+..+|+ .|.++|++++.++ ....++ ..|...-+.....+.. .+ . .....+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 34788999998653 444455566 4766899999887 666554 3444211111111110 01 0 122468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. .+. ...+....+.|+++|+++
T Consensus 251 d~vid~-~g~--------~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 251 DVVIEA-SGH--------PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred cEEEEC-CCC--------hHHHHHHHHHhccCCEEE
Confidence 988842 111 123455568899999987
No 380
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.35 E-value=6 Score=37.25 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
..++++|-.|++.|+ ++..+++.|+ +|+.+..+. ..+.+.+.+....-..++.++..|+.+.. ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457899999887652 3333444565 898888877 55555444443221235888999987643 01
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+..|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25689999864
No 381
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.24 E-value=11 Score=35.20 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=59.7
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc-------CC-C--------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN-------GF-S--------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 184 (379)
.+|.-||+|.- .++..+++.|. .|+.+|.++ .++.+.+.+..+ +. + .++++. .+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh-
Confidence 46888999863 44555666665 899999998 877765443321 21 1 123332 233221
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+|+...+ ........++..+...++|+..++-.+.++
T Consensus 82 ---~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 82 ---ADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred ---cCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 46798885321 122345677788888899998777444443
No 382
>PRK06701 short chain dehydrogenase; Provisional
Probab=84.06 E-value=9.7 Score=35.35 Aligned_cols=74 Identities=30% Similarity=0.456 Sum_probs=44.3
Q ss_pred CCCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C----
Q 016992 121 FKDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (379)
.++++||-.|++.|+ ++..+++.|. +|+.++.+. ..+.....+...+ .++.++.+|+.+... .
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 457899999976642 3333444565 788887653 3333333344333 357888888866421 0
Q ss_pred -CCceeEEEEec
Q 016992 187 -VTKVDIIISEW 197 (379)
Q Consensus 187 -~~~~D~Iv~~~ 197 (379)
..++|+||...
T Consensus 121 ~~~~iD~lI~~A 132 (290)
T PRK06701 121 ELGRLDILVNNA 132 (290)
T ss_pred HcCCCCEEEECC
Confidence 14689998653
No 383
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.00 E-value=6.8 Score=37.26 Aligned_cols=95 Identities=26% Similarity=0.242 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEEEcCCC--chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc---CCCCc
Q 016992 117 NKFLFKDKVVLDVGAGT--GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---LPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~--G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~ 189 (379)
.....+|.+||-.|+.. |.+++.+|+ +|+ .++++-.++ ..+.+++ .|-..-|.+...|+.+-. .....
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 45567899999999655 578888888 576 555555555 4445443 444333444444332211 12246
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+|+.. ++ ...+......|+++|.++
T Consensus 212 vDvv~D~-vG---------~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 212 VDVVLDT-VG---------GDTFAASLAALAPGGRLV 238 (326)
T ss_pred ceEEEEC-CC---------HHHHHHHHHHhccCCEEE
Confidence 9999853 21 234444567889999987
No 384
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.94 E-value=12 Score=36.30 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=63.3
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCc-EEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNV-ITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
.||-++-.-|.++..++..+...+ .|.--.-...++|++.||++.. ++++.. .+ +++ +.+|+|+.-++ -
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~-~~~d~vl~~~P----K 116 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDS--TA-DYP-QQPGVVLIKVP----K 116 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecc--cc-ccc-CCCCEEEEEeC----C
Confidence 799999999999999997544222 2221134456888999998643 555432 22 234 56999997653 2
Q ss_pred ChhhHHHHHHHHHhcccCCEEEE
Q 016992 204 FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG~li 226 (379)
....+...+..+...|.||+.++
T Consensus 117 ~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 117 TLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEE
Confidence 33567788889999999999977
No 385
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=83.75 E-value=1.9 Score=40.81 Aligned_cols=96 Identities=26% Similarity=0.368 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c--cCCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~D 191 (379)
....++.+||..|+|. |..++.+|+ .|...|++++.++ ..+.+++ .|....+.....+..+ + ..+.+.+|
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 3456788999977652 556666677 4655889998877 7666654 2321111111111111 1 01235689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++.. .+. ...+....+.|+++|.++
T Consensus 239 ~vld~-~g~--------~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 239 CVIEA-VGF--------EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred EEEEc-cCC--------HHHHHHHHHHhhcCCEEE
Confidence 88842 211 135566668889999987
No 386
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.71 E-value=13 Score=33.00 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----C
Q 016992 122 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (379)
++++||-.|++. .++..+++ .|. +|++++.++ ....+.+..... .++.++.+|+.+.. + .
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 567999999864 44444443 466 899999887 665554444332 24788888887532 0 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|.++...
T Consensus 79 ~~~id~ii~~a 89 (238)
T PRK05786 79 LNAIDGLVVTV 89 (238)
T ss_pred hCCCCEEEEcC
Confidence 13568888654
No 387
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.59 E-value=1.5 Score=42.55 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 122 KDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 122 ~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
++.+|+-+|+|. |..+...++ .|+ +|+++|.++ .++.+.... + ..+.....+..++...-..+|+||....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 456799999874 555555444 576 799999988 655543322 1 1122111111122111246899997421
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...- ..+.-+-....+.++||++++
T Consensus 240 ~~g~---~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 240 IPGA---KAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cCCC---CCCcCcCHHHHhcCCCCCEEE
Confidence 1011 111112244446679998877
No 388
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=83.59 E-value=1.8 Score=41.23 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-cc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~~~D 191 (379)
....++.+||-.|+|. |.++..+|+ .|..+|++++.++ ..+.+++ .|...-+.....+..+ +. .....+|
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCCC
Confidence 4567888999998642 444555556 4766899999888 7777754 2432111111111110 10 1223589
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+-.. + . ...+....+.|+++|.++
T Consensus 244 ~vid~~-g-------~-~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 244 VSFDCA-G-------V-QATLDTAIDALRPRGTAV 269 (351)
T ss_pred EEEECC-C-------C-HHHHHHHHHhccCCCEEE
Confidence 998421 1 0 124556668899999987
No 389
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.40 E-value=5.2 Score=37.96 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=56.6
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc----eeec--cCCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK----IEEI--ELPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d----~~~~--~~~~ 187 (379)
.....++.+||-.|+|. |..+..+|+ .|...|++++.++ ..+.+++. +....+.....+ ...+ ....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 35567889999987754 556666666 5765589998887 77666542 332111111111 1111 1223
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+|+.. .+ . ...+....+.|+++|.++
T Consensus 233 ~~~d~vld~-~g------~--~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 233 KGPDVVIEC-TG------A--ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCEEEEC-CC------C--HHHHHHHHHHhhcCCEEE
Confidence 569999842 11 0 124566678899999987
No 390
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.33 E-value=10 Score=35.55 Aligned_cols=94 Identities=26% Similarity=0.250 Sum_probs=56.4
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec----cCCCCc
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI----ELPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~ 189 (379)
.....++.+||.+|+|. |..+..+|+ .|...|++++.++ ..+.+++ .+.. .++..+-.+. ......
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCC
Confidence 34567888999998652 455555666 4665589999888 7776643 2332 2222221111 112356
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+++.. .+. ...+....+.|+++|.++
T Consensus 227 vd~v~~~-~~~--------~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 227 FDVVIEA-TGV--------PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CcEEEEC-CCC--------hHHHHHHHHHHhcCCEEE
Confidence 8999853 110 234555668889999987
No 391
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.20 E-value=7.1 Score=41.40 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=66.2
Q ss_pred CEEEEEcCCC--chHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeec
Q 016992 124 KVVLDVGAGT--GILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEI 183 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la-~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~ 183 (379)
++|.-||+|+ ..++..++ ..|. .|+.+|.++ .++.+.+++... + + ..+|++.. |...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-ChHH-
Confidence 5799999998 35666666 5675 999999999 888876655431 1 1 12344432 2221
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLY 233 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~ 233 (379)
-...|+|+=.. .........++..+.+.++|+.+|.-++.++-
T Consensus 387 ---~~~aDlViEav----~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 387 ---FKHADVVIEAV----FEDLALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred ---hccCCEEeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 15689888432 33445667999999999999988875554443
No 392
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=83.16 E-value=7.3 Score=33.77 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=49.7
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHH------------HHHcCCCCcEEEEEcceeeccCCCCc
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQI------------VEANGFSNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~~~~~~~ 189 (379)
+|--+|.|- | .++..+|+.|. +|+|+|+++ .++..++- +++..-..++.+. .|..+. ...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a---i~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA---IKD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH---HHH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh---hhc
Confidence 566777775 3 34455566776 999999999 77765421 1111101233332 122221 134
Q ss_pred eeEEEEec-CccccC---ChhhHHHHHHHHHhcccCCEEEEe
Q 016992 190 VDIIISEW-MGYFLL---FENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 190 ~D~Iv~~~-~~~~l~---~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
.|+++... ....-. ....+..+++.+.+.|+++-.++.
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE
Confidence 67776532 111111 123467888889999999777663
No 393
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=82.92 E-value=7.2 Score=37.83 Aligned_cols=96 Identities=26% Similarity=0.258 Sum_probs=54.8
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc---c----eeeccCCC
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG---K----IEEIELPV 187 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d----~~~~~~~~ 187 (379)
....+|.+||-.|+|. |..++.+|+ .|..+|++++.++ ..+.+++ .|....+..... + +..+ .+.
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCC
Confidence 3567888998887653 444455566 5766899999887 6655554 344211111110 1 0111 123
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
..+|+|+.. . +.....+....+.|+++|.++
T Consensus 274 ~gvDvvld~-~-------g~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 274 WGADIQVEA-A-------GAPPATIPQMEKSIAINGKIV 304 (384)
T ss_pred CCCCEEEEC-C-------CCcHHHHHHHHHHHHcCCEEE
Confidence 468988842 2 111234556667889999987
No 394
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.61 E-value=3.9 Score=39.77 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=46.4
Q ss_pred CEEEEEcCCC-ch-HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEEEEec
Q 016992 124 KVVLDVGAGT-GI-LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDIIISEW 197 (379)
Q Consensus 124 ~~VLDlGcG~-G~-~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~Iv~~~ 197 (379)
++||-||||. |. .+..+|+.+..+|+..|.+. .++.+..... .+++.++.|+.+.+-- -..+|+|++-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999964 32 23334555667999999997 6666554332 2588999898876310 24569999865
Q ss_pred C
Q 016992 198 M 198 (379)
Q Consensus 198 ~ 198 (379)
.
T Consensus 77 p 77 (389)
T COG1748 77 P 77 (389)
T ss_pred C
Confidence 3
No 395
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.43 E-value=3.5 Score=39.75 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=57.0
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE--cceee-c-cCCCCc
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK--GKIEE-I-ELPVTK 189 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~~~ 189 (379)
.....+|.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.... .+..+ + ....+.
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCC
Confidence 34567899999999864 566666777 5776899999998 8887754 34321111110 01101 1 011136
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
+|+|+-. .+ . ...+....+.+++| |.++
T Consensus 256 ~d~vid~-~G-------~-~~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 256 VDYSFEC-IG-------N-VNVMRAALECCHKGWGESI 284 (368)
T ss_pred CCEEEEC-CC-------C-HHHHHHHHHHhhcCCCeEE
Confidence 8988842 21 1 23445556778886 8876
No 396
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.34 E-value=4.3 Score=39.49 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=33.2
Q ss_pred ccCCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHH
Q 016992 117 NKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIV 164 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~ 164 (379)
.+.+.++.+||-|.+|.. -++.+...++++|++||+|+ .+...+=+.
T Consensus 30 aL~i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HhCCCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 356789999999966544 44444555567999999999 766654433
No 397
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=82.19 E-value=13 Score=33.96 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=51.9
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCC--c-hH-HHHHHH-cC-CCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 107 TKSYQNVIYQ-NKFLFKDKVVLDVGAGT--G-IL-SLFCAK-AG-AAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 107 ~~~~~~~i~~-~~~~~~~~~VLDlGcG~--G-~~-~~~la~-~g-~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+.+.|.. .+.....++||-+|+|+ | .- +..+.+ .+ ...++-.|+.+.+ ++--..+.+|
T Consensus 45 YtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v------------SDa~~~~~~D 112 (299)
T PF06460_consen 45 YTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV------------SDADQSIVGD 112 (299)
T ss_dssp HHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-
T ss_pred HHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc------------cccCCceecc
Confidence 3344444433 24456788999999997 3 12 233334 32 2366677775511 1223456788
Q ss_pred eeeccCCCCceeEEEEecCc--------cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 180 IEEIELPVTKVDIIISEWMG--------YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 180 ~~~~~~~~~~~D~Iv~~~~~--------~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
...+..+ .++|+|+|++-+ .-...++....+..-+...|+-||.+.
T Consensus 113 c~t~~~~-~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 113 CRTYMPP-DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp GGGEEES-S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred ccccCCC-CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 8887766 899999998631 011223344556666778899999886
No 398
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=81.94 E-value=1.9 Score=43.80 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-cCC-CEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceee----cc----CCCCc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK-AGA-AHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEE----IE----LPVTK 189 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~-~g~-~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~----~~~~~ 189 (379)
+.++..||||||.+|.+...+++ .|. .-|+|||+-++ ..+++.++ ++.|++. .+ +..-+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----------kp~~~c~t-~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----------KPIPNCDT-LVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----------ccCCccch-hhhhhhHHHHHHHHHHHHHhCC
Confidence 46788999999999999999988 453 57999999761 12222222 2234332 11 12356
Q ss_pred eeEEEEecCccccCC---hhhH-----HHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLF---ENML-----NTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~---~~~~-----~~~l~~~~~~LkpgG~li 226 (379)
.|+|+++........ .... -..++.....|..||.++
T Consensus 111 advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 799998754332211 1111 133444567888999876
No 399
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=81.91 E-value=9.4 Score=34.79 Aligned_cols=92 Identities=25% Similarity=0.267 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+||-.|+|. |..+..+|+ .|..+|++++.++ ..+.+++. |..+.+..... .. .....+|+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~-~~~~~~d~vl 164 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DE-IGGRGADVVI 164 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hh-hcCCCCCEEE
Confidence 4567888999998764 556666666 4764599999888 77766643 31111111110 11 1235689888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
... + . ...+....+.|+++|.++
T Consensus 165 ~~~-~----~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 165 EAS-G----S----PSALETALRLLRDRGRVV 187 (277)
T ss_pred Ecc-C----C----hHHHHHHHHHhcCCcEEE
Confidence 421 1 0 124555667889999987
No 400
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=81.82 E-value=3.2 Score=39.98 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=55.4
Q ss_pred ccCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ce----eeccCCC
Q 016992 117 NKFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KI----EEIELPV 187 (379)
Q Consensus 117 ~~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~----~~~~~~~ 187 (379)
.....++.+||-.|+|. |..+..+|+ .|+..|++++.++ ..+.+++ .|....+..... +. ..+ ..
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~-~~- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEM-TD- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHH-hC-
Confidence 34567888999988753 455555666 5776799999877 7777643 333211211111 11 111 12
Q ss_pred CceeEEEEecCccccCChhhHHHHHHHHHhccc-CCEEEE
Q 016992 188 TKVDIIISEWMGYFLLFENMLNTVLYARDKWLV-DDGIVL 226 (379)
Q Consensus 188 ~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li 226 (379)
+.+|+|+.. .+ . ...+....+.|+ ++|.++
T Consensus 252 ~~~d~vid~-~g-------~-~~~~~~~~~~l~~~~G~~v 282 (365)
T cd05279 252 GGVDYAFEV-IG-------S-ADTLKQALDATRLGGGTSV 282 (365)
T ss_pred CCCcEEEEC-CC-------C-HHHHHHHHHHhccCCCEEE
Confidence 568999842 21 1 234445567788 999987
No 401
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.74 E-value=6.8 Score=35.11 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEe-------------------cHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVE-------------------CSQ-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD-------------------~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+|+-+|||. | ..+..+++.|.++++.+| +-. .++.+.+++.+..-.-+|+.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 456899999984 3 556677788999998884 334 556666666654422235555544
Q ss_pred eeeccCC--CCceeEEEEe
Q 016992 180 IEEIELP--VTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (379)
+...... ...+|+||+.
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221110 2468999964
No 402
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.40 E-value=8.5 Score=36.93 Aligned_cols=92 Identities=21% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ ....+.+ ..|.. ..+...+...+......+|+|+-.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALE---HLGAD--DYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH---hcCCc--EEecCCChHHHHHhcCCCcEEEEC
Confidence 35788999887754 566666777 466 688887766 5444322 34432 111111111111011358888742
Q ss_pred cCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+ . ...+....+.|+++|.++
T Consensus 252 -~g----~----~~~~~~~~~~l~~~G~iv 272 (357)
T PLN02514 252 -VP----V----FHPLEPYLSLLKLDGKLI 272 (357)
T ss_pred -CC----c----hHHHHHHHHHhccCCEEE
Confidence 21 1 134455567899999987
No 403
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=81.37 E-value=14 Score=35.36 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=53.9
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeec------cCCCC
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEI------ELPVT 188 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~~~ 188 (379)
....++.+||-.|+| .|..+..+++ .|...|++++.++ ..+.+++ .+.. .++..+-..+ ..+..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~~ 255 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREITGGR 255 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHhCCC
Confidence 344678888877654 2455555566 4765699998887 7666643 2331 2222211111 11235
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+|+... + . . ..+....+.|+++|.++
T Consensus 256 ~~d~vld~v-g----~-~---~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 256 GVDVVVEAL-G----K-P---ETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCCEEEEeC-C----C-H---HHHHHHHHHHhcCCEEE
Confidence 699998532 1 1 1 24556678899999987
No 404
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.13 E-value=9.5 Score=35.75 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEec
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEW 197 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~ 197 (379)
..+++|+-+|+|. |......++ .|+ +|+.+|.++ ..+.++ ..|. +++. ..++...-..+|+||...
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~----~~G~----~~~~--~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARIT----EMGL----SPFH--LSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH----HcCC----eeec--HHHHHHHhCCCCEEEECC
Confidence 4689999999975 322222233 576 999999997 654443 2332 2221 112211125689999742
Q ss_pred CccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 198 MGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 198 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. . ..+-......++||+.++
T Consensus 219 p-~--------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 219 P-A--------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred C-h--------hhhhHHHHHcCCCCcEEE
Confidence 1 1 112344556789988877
No 405
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.13 E-value=16 Score=31.86 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHc----C-CCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 106 RTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKA----G-AAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 106 r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~----g-~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
..-.|.+.|-+ .+...|+++|.--|+.+++.|.. | ..+|+++|++- -++-+... . .+|.+++++
T Consensus 57 D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egs 126 (237)
T COG3510 57 DMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGS 126 (237)
T ss_pred HHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCC
Confidence 33345444443 45679999999999888887762 4 25999999987 44333221 2 469999999
Q ss_pred eeeccC-------CCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 180 IEEIEL-------PVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 180 ~~~~~~-------~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
..+... ..+.--+.++. ++ -++....-..++...++|.-|-+++...
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvil--Ds-dHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVIL--DS-DHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEe--cC-CchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 877542 11222333332 11 2222444567778889999998887543
No 406
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.90 E-value=7.1 Score=36.15 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=49.2
Q ss_pred EEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccc
Q 016992 125 VVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYF 201 (379)
Q Consensus 125 ~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~ 201 (379)
+|.-||+|. |.++..+++.|. +|+++|.++ .++.+.+ .|. +.....+.. . ....|+|+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~---~-~~~aDlVilavp--- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLS---L-LKDCDLVILALP--- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHh---H-hcCCCEEEEcCC---
Confidence 567788875 455666666665 899999998 7766643 232 211111211 1 146799986432
Q ss_pred cCChhhHHHHHHHHHhcccCCEEE
Q 016992 202 LLFENMLNTVLYARDKWLVDDGIV 225 (379)
Q Consensus 202 l~~~~~~~~~l~~~~~~LkpgG~l 225 (379)
......++..+...++++..+
T Consensus 67 ---~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 ---IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ---HHHHHHHHHHHHHhCCCCcEE
Confidence 133456677777777776544
No 407
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=80.75 E-value=12 Score=35.46 Aligned_cols=91 Identities=25% Similarity=0.328 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee----cc-CCCCcee
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----IE-LPVTKVD 191 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~~-~~~~~~D 191 (379)
..++.+||-.|+|. |..+..+|+ .|++.|++++.++ ..+.+++ .|.. .++...-.. +. ...+.+|
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhCCCCc
Confidence 34788899987653 555556666 5777899999888 7766643 3431 222211111 10 1113689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++.. .+ . ...+....+.|+++|.++
T Consensus 246 ~vid~-~g-------~-~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 246 AVIDF-VN-------N-SATASLAFDILAKGGKLV 271 (350)
T ss_pred EEEEC-CC-------C-HHHHHHHHHHhhcCCeEE
Confidence 99842 21 0 234566678889999987
No 408
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.63 E-value=4.2 Score=32.80 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCC-CCceeEEEEe
Q 016992 122 KDKVVLDVGAGTG-ILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELP-VTKVDIIISE 196 (379)
Q Consensus 122 ~~~~VLDlGcG~G-~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~Iv~~ 196 (379)
...+|+++|-|.= ..+..+++.|. .|+++|+++. .+. . .+.++..|+.+-.+. -...|+|.|-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~----g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-E----GVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-c----CcceeeecccCCCHHHhcCCcEEEEe
Confidence 3449999999974 55666777885 9999999872 111 2 366888888764432 2578999984
No 409
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.20 E-value=5.4 Score=38.14 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHc---------CCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAKA---------GAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~~---------g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
....-.++++|+|+|.++..+.+. .+.++..||+|+ ....=+++++..
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 344568999999999998877663 256999999999 777777777654
No 410
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.09 E-value=13 Score=34.90 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=54.5
Q ss_pred CEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-cCC----------CCcEEEEEcceeeccCCCCc
Q 016992 124 KVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-NGF----------SNVITVLKGKIEEIELPVTK 189 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-~~~----------~~~i~~~~~d~~~~~~~~~~ 189 (379)
++|.-||+|.- .++..+++.|. +|+++|.++ .++.+++.+.. .+. ..++++. .|..+. ...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH---hcc
Confidence 46888999863 44555556665 899999998 87777654321 110 0112221 122211 145
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecC
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDK 229 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~ 229 (379)
.|+|+.... ........++..+..+++++..++-.+
T Consensus 80 aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 80 ADLVIEAVP----EKLELKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred CCEEEEecc----CcHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 799885432 111235667777777777766555333
No 411
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.99 E-value=12 Score=31.98 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=42.1
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-------------------HHHHHHHHHHHcCCCCcEEEEEcceeec
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-------------------MANMAKQIVEANGFSNVITVLKGKIEEI 183 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-------------------~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 183 (379)
+|+-+|||. | ..+..+++.|.++++.+|.+. ..+.+++++++..-.-+++.+...+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 478899984 4 466777888988999988652 2334444554433222344444443321
Q ss_pred cCC--CCceeEEEEe
Q 016992 184 ELP--VTKVDIIISE 196 (379)
Q Consensus 184 ~~~--~~~~D~Iv~~ 196 (379)
... -..+|+||..
T Consensus 81 ~~~~~l~~~DlVi~~ 95 (174)
T cd01487 81 NLEGLFGDCDIVVEA 95 (174)
T ss_pred hHHHHhcCCCEEEEC
Confidence 111 2568999853
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.86 E-value=13 Score=34.73 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=52.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIII 194 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 194 (379)
....++.+||-.|+|. |..+..+++ .|. +|++++.++ ..+.+++ .|... +... ... .....+|+++
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~-~~~~----~~~-~~~~~~d~vi 219 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVET-VLPD----EAE-SEGGGFDVVV 219 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCcE-EeCc----ccc-ccCCCCCEEE
Confidence 4567788999997542 334444455 476 599999888 8777765 34321 1111 111 2335699998
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. .+ . ...+....+.|+++|.++
T Consensus 220 d~-~g----~----~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 220 EA-TG----S----PSGLELALRLVRPRGTVV 242 (319)
T ss_pred EC-CC----C----hHHHHHHHHHhhcCCEEE
Confidence 42 11 1 123445567789999887
No 413
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.78 E-value=4.8 Score=33.47 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.2
Q ss_pred EEcCCCc--hHHHHHH--Hc-CCCEEEEEecHH-HHHHHHHH--HHHcCCCCcEEEEEcce
Q 016992 128 DVGAGTG--ILSLFCA--KA-GAAHVYAVECSQ-MANMAKQI--VEANGFSNVITVLKGKI 180 (379)
Q Consensus 128 DlGcG~G--~~~~~la--~~-g~~~v~~vD~s~-~~~~a~~~--~~~~~~~~~i~~~~~d~ 180 (379)
|||++.| .....+. .. +..+|+++|+++ .++..+++ +.-+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444443 33 346899999999 99999988 66554433355555443
No 414
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=79.44 E-value=7.6 Score=36.68 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
...++.+||-.|+|. |..+..+++ .|. +|++++.++ ..+.+++ .|...-+.....+..........+|+++.
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 567888999999653 455555666 466 799999888 7777644 34311111111111110001134788884
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .+ . ...+....+.|+++|.++
T Consensus 235 ~-~g-------~-~~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 235 T-AP-------N-AKAISALVGGLAPRGKLL 256 (333)
T ss_pred C-CC-------c-hHHHHHHHHHcccCCEEE
Confidence 2 11 0 234555667889999987
No 415
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=79.22 E-value=8.8 Score=29.30 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=43.9
Q ss_pred CEEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccC
Q 016992 124 KVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLL 203 (379)
Q Consensus 124 ~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~ 203 (379)
.+|| +.||+|.-+-.++ ...++.++..|++ +++......++......+|+|+..+
T Consensus 4 ~~IL-l~C~~G~sSS~l~----------------~k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~p------ 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLV----------------NKMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAP------ 58 (95)
T ss_pred cEEE-EECCCchhHHHHH----------------HHHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECc------
Confidence 4566 5688886555443 3445666778874 7777777766643335689999643
Q ss_pred ChhhHHHHHHHHHhcccCCE
Q 016992 204 FENMLNTVLYARDKWLVDDG 223 (379)
Q Consensus 204 ~~~~~~~~l~~~~~~LkpgG 223 (379)
.+...+..+...+.+-|
T Consensus 59 ---qi~~~~~~i~~~~~~~~ 75 (95)
T TIGR00853 59 ---QVAYMLPDLKKETDKKG 75 (95)
T ss_pred ---hHHHHHHHHHHHhhhcC
Confidence 34445555555554433
No 416
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.76 E-value=11 Score=34.15 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (379)
.+++||-.|++.| .++..+++.|+ +|+.++.++ .++...+.+...+...++.++.+|+.+... ..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5788999998654 23333444566 899999887 666655555542223458888888876420 02
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|++|...
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 4689998753
No 417
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=78.70 E-value=8.6 Score=37.28 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-H-HHHHHHHHHHcCCCCcEEEEE-cceeeccCCCCceeEEEE
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLK-GKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~D~Iv~ 195 (379)
.+|.+||-.|+|. |.++..+|+ .|+ +|++++.++ . .+.++ ..|.. .++. .+...+......+|+|+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEE
Confidence 4788999998864 566666777 576 788888765 3 44443 34542 1221 111111100135898884
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
. .+ . ...+....+.|++||.++
T Consensus 249 ~-~G-------~-~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 T-VS-------A-EHALLPLFSLLKVSGKLV 270 (375)
T ss_pred C-CC-------c-HHHHHHHHHhhcCCCEEE
Confidence 2 21 1 224455567899999987
No 418
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.64 E-value=2.2 Score=42.07 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
.+.+||-+|||. | -+...++..|..+|+.||++- ....|.+.+.+..-.-++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 567999999984 4 445556666888888887643 133455555554433457888888
Q ss_pred eeeccCC---CCceeEEEE
Q 016992 180 IEEIELP---VTKVDIIIS 195 (379)
Q Consensus 180 ~~~~~~~---~~~~D~Iv~ 195 (379)
+.+..++ .++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 8876543 356888874
No 419
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=77.91 E-value=6.6 Score=36.95 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=54.5
Q ss_pred CEEEEEcCCC--chHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEE-cceeec------cCCCCceeEE
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLK-GKIEEI------ELPVTKVDII 193 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~-~d~~~~------~~~~~~~D~I 193 (379)
.+|+-+|+|. |.++..+++.|. .|+.++.+. .++..++ ..|+ .+.. +..... +.+.+.+|+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcccccccCEE
Confidence 4799999996 567777888775 899999876 5554443 1222 1111 110000 1112578999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+...=. .....++..+...+.++..+++
T Consensus 75 iv~vK~------~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 75 LLACKA------YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEECCH------HhHHHHHHHHHhhCCCCCEEEE
Confidence 853211 2356777888888999887774
No 420
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=77.88 E-value=14 Score=30.50 Aligned_cols=77 Identities=26% Similarity=0.291 Sum_probs=41.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC
Q 016992 112 NVIYQNKFLFKDKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP 186 (379)
Q Consensus 112 ~~i~~~~~~~~~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 186 (379)
.++.+.....++++|+-+||| ..+..++ +.|...|+.+|.++ ..+...+.+.... +.....+..+.
T Consensus 8 ~a~~~~~~~~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 78 (155)
T cd01065 8 RALEEAGIELKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--- 78 (155)
T ss_pred HHHHhhCCCCCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---
Confidence 344433223567899999986 3333333 34446899999987 5544333332211 11122232222
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|+|++..
T Consensus 79 ~~~~Dvvi~~~ 89 (155)
T cd01065 79 LAEADLIINTT 89 (155)
T ss_pred cccCCEEEeCc
Confidence 26789999854
No 421
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=77.79 E-value=28 Score=32.42 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=58.3
Q ss_pred CEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHH-------HcCCC---------CcEEEEEcceeecc
Q 016992 124 KVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVE-------ANGFS---------NVITVLKGKIEEIE 184 (379)
Q Consensus 124 ~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~-------~~~~~---------~~i~~~~~d~~~~~ 184 (379)
++|--||+|. | .++..++..|. +|+++|.++ .++.+++.+. ..+.- .++.+. .+...+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCHHHh-
Confidence 4688899985 2 45555566665 999999999 8776655432 11210 112222 222211
Q ss_pred CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 185 LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 185 ~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+|+... .........++.++...++|+..++-.+.++
T Consensus 82 ---~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 82 ---RDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred ---CCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 4579998532 2223455677788888889988776444443
No 422
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.65 E-value=11 Score=36.73 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
.+.+||-+|||. | ..+..+++.|.++++.+|.+ . .++.+.+.+.+..-.-++..+...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 567899999984 4 45667777899999999987 4 566666666554321223344333
Q ss_pred eeeccCC--CCceeEEEEe
Q 016992 180 IEEIELP--VTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (379)
+...... ...+|+||..
T Consensus 214 ~~~~~~~~~~~~~D~Vv~~ 232 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVDG 232 (376)
T ss_pred CChHHHHHHHhCCCEEEEC
Confidence 2221100 1468999853
No 423
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.56 E-value=16 Score=33.99 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCCCEEEEEcCCCch--HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 121 FKDKVVLDVGAGTGI--LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~--~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
..+++|+-||||.-. .+..++..|.++|+.+|.+. ..+...+.+.... ..+.+... .++......+|+||..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~~--~~~~~~~~~aDiVIna 199 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF--PAARATAG--SDLAAALAAADGLVHA 199 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEec--cchHhhhCCCCEEEEC
Confidence 467899999998632 23334456888999999987 5554444443221 11333221 1111111458999875
No 424
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=77.40 E-value=6.3 Score=37.74 Aligned_cols=75 Identities=31% Similarity=0.364 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH----------------------HHHHHHHHHHHcCCCCcEEEEE
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ----------------------MANMAKQIVEANGFSNVITVLK 177 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~----------------------~~~~a~~~~~~~~~~~~i~~~~ 177 (379)
...+||-+|||. | .++..|++.|.++++.+|.+. .++.+++.+++..-.-+++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 456899999984 3 456677778999999999751 3344455555443222355555
Q ss_pred cceeeccCC--CCceeEEEEe
Q 016992 178 GKIEEIELP--VTKVDIIISE 196 (379)
Q Consensus 178 ~d~~~~~~~--~~~~D~Iv~~ 196 (379)
.++...... ...+|+|+.-
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEEc
Confidence 554321110 2568999864
No 425
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=77.34 E-value=24 Score=33.03 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCC---CCceeEE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELP---VTKVDII 193 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~D~I 193 (379)
.+++||-.| |+|.++..+++ .|. +|+++..+. ............+...+++++.+|+.+...- ...+|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 467899988 56777777665 354 787776655 4333222222222224688999998765311 1357988
Q ss_pred EEec
Q 016992 194 ISEW 197 (379)
Q Consensus 194 v~~~ 197 (379)
|...
T Consensus 82 ih~A 85 (325)
T PLN02989 82 FHTA 85 (325)
T ss_pred EEeC
Confidence 8754
No 426
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.32 E-value=5.6 Score=37.62 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=54.6
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcc---eeec-c-CCCCc
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGK---IEEI-E-LPVTK 189 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d---~~~~-~-~~~~~ 189 (379)
....++.+||..|+|. |..+..+|+ .|...|++++.++ ..+.+++ .+.. .++..+ ...+ . .+...
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCCCC
Confidence 4456888999998654 555666666 5765599998877 6665543 3331 222211 1111 0 12245
Q ss_pred eeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 190 VDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 190 ~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+|+++... + . ...+....+.|+++|.++
T Consensus 228 ~d~vld~~-g-------~-~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 228 ADLVIEAA-G-------S-PATIEQALALARPGGKVV 255 (343)
T ss_pred CCEEEECC-C-------C-HHHHHHHHHHhhcCCEEE
Confidence 99998421 1 0 234556678889999987
No 427
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=77.28 E-value=6.7 Score=29.99 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=41.4
Q ss_pred EcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCccccCChhhH
Q 016992 129 VGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMGYFLLFENML 208 (379)
Q Consensus 129 lGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~~~l~~~~~~ 208 (379)
+.||+|.-+-. +++.+++.++..|++ +++...+..++......+|+|+..+ .+
T Consensus 4 ~~Cg~G~sTS~----------------~~~ki~~~~~~~~~~--~~v~~~~~~~~~~~~~~~Diil~~P---------qv 56 (96)
T cd05564 4 LVCSAGMSTSI----------------LVKKMKKAAEKRGID--AEIEAVPESELEEYIDDADVVLLGP---------QV 56 (96)
T ss_pred EEcCCCchHHH----------------HHHHHHHHHHHCCCc--eEEEEecHHHHHHhcCCCCEEEECh---------hH
Confidence 46888865444 334556777788874 7888887776643346789999643 34
Q ss_pred HHHHHHHHhcccC
Q 016992 209 NTVLYARDKWLVD 221 (379)
Q Consensus 209 ~~~l~~~~~~Lkp 221 (379)
...+..+.+.+.+
T Consensus 57 ~~~~~~i~~~~~~ 69 (96)
T cd05564 57 RYMLDEVKKKAAE 69 (96)
T ss_pred HHHHHHHHHHhcc
Confidence 4455555554433
No 428
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.21 E-value=4 Score=38.59 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eecc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D 191 (379)
....++.+||..|+|. |..+..+|+ .|. +|+++..++ ..+.+++ .+...-+.....+. ..+. .+...+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567888999998763 566666777 465 788887777 7776644 23211111111111 1110 1234589
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++... + . ...+..+.+.|+++|.++
T Consensus 230 ~vld~~-g----~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 230 VVIDAT-G----N----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred EEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 998531 1 1 234566677889999987
No 429
>PRK08324 short chain dehydrogenase; Validated
Probab=77.11 E-value=17 Score=38.44 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCchHHHHH----HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----C
Q 016992 122 KDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~l----a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (379)
+|++||-.|++.| ++..+ ++.|+ +|+++|.++ .++.+.+.+... .++.++.+|+.+.. + .
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5689999987543 44443 34576 899999988 665554443322 35888888876542 1 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|+||...
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 24689999753
No 430
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.72 E-value=39 Score=30.04 Aligned_cols=101 Identities=20% Similarity=0.143 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeeccC-----C----
Q 016992 122 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEIEL-----P---- 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~---- 186 (379)
.++++|-.|++. .++..+++ .|. +|++++.+. ..+.....++..+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899998654 45454444 465 788876542 3333333333333 357888888876431 0
Q ss_pred -CCceeEEEEecCccccC----------ChhhHHHHHHHHHhcccCCEEEE
Q 016992 187 -VTKVDIIISEWMGYFLL----------FENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 187 -~~~~D~Iv~~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+.+|+||...-..... +......+++.+.+.++.+|.++
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv 131 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVV 131 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEE
Confidence 13589888653111000 00112356666666666666655
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=76.39 E-value=14 Score=33.61 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+|+-+|||. | ..+..+++.|.++++.+|.+. .++.+++++.+..-.-+|+.+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 457899999973 3 455566777888999887542 233344445443322234444444
Q ss_pred eeeccCC--CCceeEEEEe
Q 016992 180 IEEIELP--VTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (379)
+.+.... -..||+||..
T Consensus 111 i~~~~~~~~~~~~DiVi~~ 129 (245)
T PRK05690 111 LDDDELAALIAGHDLVLDC 129 (245)
T ss_pred CCHHHHHHHHhcCCEEEec
Confidence 3321111 2579999964
No 432
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.33 E-value=25 Score=33.02 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCEEEEEcCCCchHHHHHHHcCC-CEEEEEecHHHHHHHHHHHHHcCC--CCcEEEEEcce
Q 016992 104 VVRTKSYQNVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGA-AHVYAVECSQMANMAKQIVEANGF--SNVITVLKGKI 180 (379)
Q Consensus 104 ~~r~~~~~~~i~~~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~~v~~vD~s~~~~~a~~~~~~~~~--~~~i~~~~~d~ 180 (379)
..|+..|-+.+....... ...|+-||||-=.-+.-+-. +. .+|+-||.-+.++.=++.++..+. +..++++..|+
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl 152 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDL 152 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccc
Confidence 455655666666554433 57899999986322221111 22 478888887777777777777653 24689999999
Q ss_pred eecc---------CCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 181 EEIE---------LPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 181 ~~~~---------~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
.+-. +.....-+++++.+..+|. +.....++..+...+.||-.++..
T Consensus 153 ~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 153 REDDWPQALAAAGFDRSRPTLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFD 208 (297)
T ss_pred cccchHHHHHhcCCCcCCCeEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEe
Confidence 8432 1235557888887755554 456678999999988888777744
No 433
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.25 E-value=17 Score=33.93 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=43.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCc-hHH--HHHHHcCCCEEEEEecHH-HHHHHHHHHHHcC-CCCcEEEEEcceeecc
Q 016992 110 YQNVIYQNKFLFKDKVVLDVGAGTG-ILS--LFCAKAGAAHVYAVECSQ-MANMAKQIVEANG-FSNVITVLKGKIEEIE 184 (379)
Q Consensus 110 ~~~~i~~~~~~~~~~~VLDlGcG~G-~~~--~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~ 184 (379)
+...+........++++|-+|+| | ..+ ..+++.|+++|+.++.+. ..+.+++..+... ....+.+...|..+..
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~ 191 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTE 191 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhh
Confidence 33344433223467899999997 4 222 223456887899998874 3333333322211 0012334444544321
Q ss_pred ---CCCCceeEEEEec
Q 016992 185 ---LPVTKVDIIISEW 197 (379)
Q Consensus 185 ---~~~~~~D~Iv~~~ 197 (379)
.....+|+||...
T Consensus 192 ~~~~~~~~~DilINaT 207 (289)
T PRK12548 192 KLKAEIASSDILVNAT 207 (289)
T ss_pred HHHhhhccCCEEEEeC
Confidence 1113579999754
No 434
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.21 E-value=11 Score=35.29 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=50.4
Q ss_pred CEEEEEcCCC-c-hHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 124 KVVLDVGAGT-G-ILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~-G-~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+|.-||+|. | .++..+.+.|. .+|+++|.++ .++.+++ .|+.. . ...+..+. ....|+|+.....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~---~~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA---VKGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH---hcCCCEEEECCCH
Confidence 5788999886 2 34444545553 4899999998 7666543 34311 1 11122111 1457999864321
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.....++..+...+++|+.++
T Consensus 77 ------~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 77 ------GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ------HHHHHHHHHHHhhCCCCCEEE
Confidence 234556666767788887554
No 435
>PRK05867 short chain dehydrogenase; Provisional
Probab=76.19 E-value=12 Score=33.54 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..++++|-.|++.| .++..+++.|. +|+.++.+. .++...+.+...+ .++.++.+|+.+... .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999998765 23334444566 899999887 6666655555444 457788888865420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|++|...
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 25789999753
No 436
>PRK06172 short chain dehydrogenase; Provisional
Probab=76.10 E-value=13 Score=33.25 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCchHHHH----HHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----C
Q 016992 122 KDKVVLDVGAGTGILSLF----CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~----la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~ 186 (379)
++++||-.|++.| ++.. +++.|. +|+.++.++ -++.+.+.+...+ .++.++.+|+.+.. + .
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999997654 4343 444565 899999887 6665555555443 45888999987542 0 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|+||...
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 24679999764
No 437
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=76.04 E-value=10 Score=31.37 Aligned_cols=72 Identities=31% Similarity=0.305 Sum_probs=49.0
Q ss_pred CEEEEEcCCCc---hHHHHHHHcCCCEEEEEecH--H-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CCC
Q 016992 124 KVVLDVGAGTG---ILSLFCAKAGAAHVYAVECS--Q-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (379)
Q Consensus 124 ~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s--~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (379)
++||-.|+++| .++..+++.|...|+.+..+ . .+......+...+ .++.+++.|+.+.. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 36888888865 34445555577789999987 4 5555555555555 56999999976542 113
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|++|...
T Consensus 79 ~~ld~li~~a 88 (167)
T PF00106_consen 79 GPLDILINNA 88 (167)
T ss_dssp SSESEEEEEC
T ss_pred cccccccccc
Confidence 6799999864
No 438
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.95 E-value=13 Score=34.52 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LP 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~ 186 (379)
..+++||-=||.+| .++..+++.|+ +++-+-... -++...+.+.+.+-.+++.++++|+.+.. ..
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 46889999999998 45666677777 555555555 66666444544443336999999998764 12
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+..|++|.+.
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 47899999874
No 439
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=75.70 E-value=22 Score=32.83 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s 154 (379)
.+.+|+-+|||. | ..+..|++.|.++++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 567899999994 4 55667778898899999966
No 440
>PRK10083 putative oxidoreductase; Provisional
Probab=75.61 E-value=13 Score=35.08 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=54.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-c-CCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-ccCCCCceeE
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-A-GAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-IELPVTKVDI 192 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~-g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~ 192 (379)
....+|.+||-.|+|. |..+..+++ . |+..|+++|.++ ..+.+++ .|...-+.....+... +.-....+|+
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhcCCCCCCE
Confidence 4567888999999653 445555666 3 887899999888 7776654 3432111111111111 1101123466
Q ss_pred EEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 193 IISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 193 Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+.. .+ . ...+....+.|+++|.++
T Consensus 232 vid~-~g-------~-~~~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 232 IIDA-AC-------H-PSILEEAVTLASPAARIV 256 (339)
T ss_pred EEEC-CC-------C-HHHHHHHHHHhhcCCEEE
Confidence 6642 11 1 234555668899999987
No 441
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=75.42 E-value=9.2 Score=33.50 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+||-+|||. | ..+..++..|.++++.+|... .++.+.+++++..-.-+++.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 356899999885 2 445556667999999998552 234445555554322235544444
Q ss_pred eeeccCC-CCceeEEEEe
Q 016992 180 IEEIELP-VTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~~-~~~~D~Iv~~ 196 (379)
+.+.... ...||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 3321100 2578999964
No 442
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.41 E-value=11 Score=34.95 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=42.3
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHc
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEAN 167 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~ 167 (379)
...++..|||.=+|+|..+..+.+.|. .++|+|+++ .++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 457899999999999999888888865 899999999 999999988764
No 443
>PRK07677 short chain dehydrogenase; Provisional
Probab=75.40 E-value=14 Score=33.19 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=46.5
Q ss_pred CCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CCC
Q 016992 123 DKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PVT 188 (379)
Q Consensus 123 ~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 188 (379)
++++|-.|++.| .++..+++.|. +|++++.+. .++.+.+.+...+ .++.++.+|+.+... ..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 467888888665 23333444566 899999887 6666555554433 458888888865320 024
Q ss_pred ceeEEEEec
Q 016992 189 KVDIIISEW 197 (379)
Q Consensus 189 ~~D~Iv~~~ 197 (379)
..|+||...
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 689999754
No 444
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.38 E-value=14 Score=33.75 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHH----HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------CCC
Q 016992 123 DKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PVT 188 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~l----a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~ 188 (379)
++++|-.|++.| ++..+ ++.|+ +|++++.++ .++...+.....+...++.++.+|+.+... ..+
T Consensus 3 ~k~~lItGasg~-iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSG-FGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCch-HHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 567888886554 44444 44565 899998777 555554444444444568899999876421 014
Q ss_pred ceeEEEEe
Q 016992 189 KVDIIISE 196 (379)
Q Consensus 189 ~~D~Iv~~ 196 (379)
++|+|+..
T Consensus 81 ~id~vv~~ 88 (280)
T PRK06914 81 RIDLLVNN 88 (280)
T ss_pred CeeEEEEC
Confidence 67988875
No 445
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=75.37 E-value=16 Score=38.68 Aligned_cols=101 Identities=20% Similarity=0.104 Sum_probs=65.0
Q ss_pred CEEEEEcCCCc--hHHHHHH-HcCCCEEEEEecHH-HHHHHHHHHHHc-------C-C--------CCcEEEEEcceeec
Q 016992 124 KVVLDVGAGTG--ILSLFCA-KAGAAHVYAVECSQ-MANMAKQIVEAN-------G-F--------SNVITVLKGKIEEI 183 (379)
Q Consensus 124 ~~VLDlGcG~G--~~~~~la-~~g~~~v~~vD~s~-~~~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~ 183 (379)
++|.-||+|+= .++..++ +.|. .|+.+|.++ .++.+.+++... + + ..+|++. .|...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYRGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChHHh
Confidence 47999999983 4444555 4676 999999999 888876655321 1 1 1234433 232222
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCceEE
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASLYL 234 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~ 234 (379)
...|+|+=.. .........++..+.+.++|+.+|.-++.++-+
T Consensus 383 ----~~adlViEav----~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i 425 (699)
T TIGR02440 383 ----KDVDIVIEAV----FEDLALKHQMVKDIEQECAAHTIFASNTSSLPI 425 (699)
T ss_pred ----ccCCEEEEec----cccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCH
Confidence 5679888432 333356679999999999999888755544433
No 446
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=75.35 E-value=7.6 Score=36.80 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce----eeccCCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI----EEIELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~ 190 (379)
....++.+||-.|+|. |..+..+++ .|..+|++++.++ ....+++ .|...-+.....+. ..+ .+...+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~-~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLEL-TDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHH-hCCCCC
Confidence 3456788888887642 344445556 4756899999888 7666653 34321122221111 111 122468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. + +. ...+..+.+.|+++|.++
T Consensus 237 d~vld~-~-------g~-~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 237 DVVIEA-V-------GI-PATFELCQELVAPGGHIA 263 (345)
T ss_pred CEEEEC-C-------CC-HHHHHHHHHhccCCcEEE
Confidence 998842 1 11 224566678899999987
No 447
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=75.10 E-value=19 Score=36.51 Aligned_cols=100 Identities=18% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCC---------CCcEEEEEcceeec
Q 016992 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF---------SNVITVLKGKIEEI 183 (379)
Q Consensus 123 ~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 183 (379)
-.+|--||+|+ | .++..+++.|. .|+.+|.++ .++.+.+++.. .|. ..++++. .|...+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~l 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLHAL 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHHHh
Confidence 35788999996 2 55666777776 999999999 88776554332 121 0123332 233322
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCce
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKASL 232 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~ 232 (379)
...|+||... .........++..+...++|+.++.-++.++
T Consensus 83 ----~~aDlVIEav----~E~~~vK~~vf~~l~~~~~~~~IlasnTStl 123 (503)
T TIGR02279 83 ----ADAGLVIEAI----VENLEVKKALFAQLEELCPADTIIASNTSSL 123 (503)
T ss_pred ----CCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEEECCCCC
Confidence 3579998643 2222445677778888888887765444443
No 448
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.89 E-value=12 Score=33.15 Aligned_cols=67 Identities=30% Similarity=0.331 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH--HHHHHHHHHHHcCCCCcEEEEEcceeec-----------c
Q 016992 122 KDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ--MANMAKQIVEANGFSNVITVLKGKIEEI-----------E 184 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~--~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----------~ 184 (379)
..+.||-.||..|+++..+++ .|. .|+++--+- |.+.+.+ .| +.....|+.+- .
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~----~g----l~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQ----FG----LKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHh----hC----CeeEEeccCChHHHHHHHHHHhh
Confidence 456899999999999888877 255 888887653 7666643 23 45556666442 1
Q ss_pred CCCCceeEEEEec
Q 016992 185 LPVTKVDIIISEW 197 (379)
Q Consensus 185 ~~~~~~D~Iv~~~ 197 (379)
.++++.|+.+.+.
T Consensus 77 ~~~Gkld~L~NNA 89 (289)
T KOG1209|consen 77 NPDGKLDLLYNNA 89 (289)
T ss_pred CCCCceEEEEcCC
Confidence 3568899988753
No 449
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=74.70 E-value=8.6 Score=37.00 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ceee-c-cCCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (379)
....+|.+||-+|+|. |.++..+|+ .|+..|+++|.++ .++.+++ .|...-+..... +..+ + .+..+.+
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhCCCC
Confidence 4567899999998753 455666666 5776899999998 8777754 343211111111 1111 0 0112368
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+-. .+ . ...+....+.|+++ |.++
T Consensus 258 d~vid~-~g-------~-~~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 258 DYTFEC-IG-------N-VKVMRAALEACHKGWGTSV 285 (368)
T ss_pred cEEEEC-CC-------C-hHHHHHHHHhhccCCCeEE
Confidence 988842 21 1 13445556788887 8876
No 450
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=74.59 E-value=15 Score=32.93 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCCchHHHHH----HHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~l----a~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
.++++||-.|++.| ++..+ ++.|+ +|+.++.++ .++...+.++..+ .++.++.+|+.+...
T Consensus 9 ~~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 46889999997554 44444 44576 899999887 6655555555444 357888888875420
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+++|++|...
T Consensus 85 ~~~~id~vi~~a 96 (256)
T PRK06124 85 EHGRLDILVNNV 96 (256)
T ss_pred hcCCCCEEEECC
Confidence 124679998753
No 451
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=74.39 E-value=21 Score=32.15 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s 154 (379)
.+.+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999984 4 55667778899999999854
No 452
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=74.30 E-value=8.6 Score=36.40 Aligned_cols=93 Identities=28% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce---eeccCCCCceeEE
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIELPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~I 193 (379)
..++.+||-.|+|. |..+..+++ .|..+|++++.++ ....+++ .|....+.....+. ..+ .+.+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEE
Confidence 35788888877653 455566666 4655788887776 6655543 33311111111111 111 123568999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... + . ........+.|+++|.++
T Consensus 236 ld~~-g----~----~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 236 LEMS-G----N----PKAIEQGLKALTPGGRVS 259 (341)
T ss_pred EECC-C----C----HHHHHHHHHHhccCCEEE
Confidence 8531 1 0 123455567889999987
No 453
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.96 E-value=16 Score=33.17 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------CC
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PV 187 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~ 187 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.+. .++.+.+.+.... ..++.++..|+.+..- ..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 35789999998776 23444555576 899999887 6655555444321 1358888888876420 12
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|++|.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4689988753
No 454
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=73.64 E-value=7.6 Score=37.25 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee----c-c-CCCC
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE----I-E-LPVT 188 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~----~-~-~~~~ 188 (379)
....++.+||-.|+| .|..+..+++ .|...|++++.++ ..+.+++ .|.. .++..+-.. + . .+..
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~~~ 250 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTDGR 250 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcCCC
Confidence 445678899998775 2555566666 5765699998887 6666542 3431 222221111 1 0 1235
Q ss_pred ceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 189 KVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 189 ~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.+|+++... +. ...+....+.|+++|.++
T Consensus 251 ~vd~vld~~-~~--------~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 251 GADYAFEAV-GR--------AATIRQALAMTRKGGTAV 279 (363)
T ss_pred CCCEEEEcC-CC--------hHHHHHHHHHhhcCCeEE
Confidence 689888421 10 134566678899999987
No 455
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.63 E-value=16 Score=33.88 Aligned_cols=88 Identities=22% Similarity=0.126 Sum_probs=52.7
Q ss_pred CEEEEEcCCC--chHHHHHHHcCC-CEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEecCc
Q 016992 124 KVVLDVGAGT--GILSLFCAKAGA-AHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISEWMG 199 (379)
Q Consensus 124 ~~VLDlGcG~--G~~~~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~~~~ 199 (379)
.+|+-+|.|- |.++..+.+.|. ..|++.|.+. .++.+.+ .|+.+. ...+.. .......|+||...+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~---~~~~~~--~~~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDE---LTVAGL--AEAAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccc---cccchh--hhhcccCCEEEEeccH
Confidence 4788888774 456666666665 4589999887 6655543 232111 001110 1112557998865321
Q ss_pred cccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 200 YFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 200 ~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.....+++++...|++|..+.
T Consensus 75 ------~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 75 ------EATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ------HHHHHHHHHhcccCCCCCEEE
Confidence 456788888888888887665
No 456
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=73.45 E-value=8.9 Score=36.86 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEc--ceee-c-cCCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKG--KIEE-I-ELPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~~ 190 (379)
....+|.+||-.|+|. |.++..+|+ .|+.+|++++.++ ..+.+++ .|...-+..... +..+ + ....+.+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHhCCCC
Confidence 4567899999998753 455555666 5766899999988 8777754 343211111110 0100 1 0112368
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+++-. .+ . ...+....+.+++| |.++
T Consensus 259 d~vid~-~G-------~-~~~~~~~~~~~~~~~g~~v 286 (369)
T cd08301 259 DYSFEC-TG-------N-IDAMISAFECVHDGWGVTV 286 (369)
T ss_pred CEEEEC-CC-------C-hHHHHHHHHHhhcCCCEEE
Confidence 988742 21 1 23444455778896 8876
No 457
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.32 E-value=12 Score=38.46 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=48.0
Q ss_pred cCCCCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCC-------CCcEEEEEcceeeccC
Q 016992 118 KFLFKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGF-------SNVITVLKGKIEEIEL 185 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~-------~~~i~~~~~d~~~~~~ 185 (379)
.....|++||-.|+. |.++..+++ .|. +|++++.+. .+....+.+...++ ..++.++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 75 LDTKDEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred cccCCCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 445678889988874 555555544 455 899998877 55444333322111 1358899999986431
Q ss_pred ---CCCceeEEEEe
Q 016992 186 ---PVTKVDIIISE 196 (379)
Q Consensus 186 ---~~~~~D~Iv~~ 196 (379)
..+.+|+||+.
T Consensus 153 I~~aLggiDiVVn~ 166 (576)
T PLN03209 153 IGPALGNASVVICC 166 (576)
T ss_pred HHHHhcCCCEEEEc
Confidence 12568998875
No 458
>PRK08223 hypothetical protein; Validated
Probab=73.27 E-value=9.4 Score=35.57 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
...+||-+|||. | ..+..+++.|.++++.+|.+. .++.|++.+.+.+-.-+|+.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 456899999994 4 567788888988988887643 134455555543322335555444
Q ss_pred eeeccCC--CCceeEEEE
Q 016992 180 IEEIELP--VTKVDIIIS 195 (379)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~ 195 (379)
+..-... -..+|+|+.
T Consensus 106 l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAFLDGVDVYVD 123 (287)
T ss_pred cCccCHHHHHhCCCEEEE
Confidence 3321111 257899984
No 459
>PRK07890 short chain dehydrogenase; Provisional
Probab=72.74 E-value=20 Score=32.08 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------CC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~ 187 (379)
.+++||-.|++.| .++..+++.|. +|++++.++ ..+.+.+.+...+ .++.++..|+.+... ..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 5678999887654 22333444576 899999888 6665555554433 357888988865321 11
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|+|+...
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 4689998754
No 460
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.65 E-value=6.3 Score=32.14 Aligned_cols=72 Identities=26% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCCCCEEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...+++||-+|+|.- .....++..|+.+|+.+.-+. .++...+.+ +- ..+.++.. .++......+|+|++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~-~~~~~~~~--~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GG-VNIEAIPL--EDLEEALQEADIVINA 82 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TG-CSEEEEEG--GGHCHHHHTESEEEE-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cc-cccceeeH--HHHHHHHhhCCeEEEe
Confidence 457899999999742 333344456888999999887 444433333 11 23555543 3332112579999985
Q ss_pred c
Q 016992 197 W 197 (379)
Q Consensus 197 ~ 197 (379)
.
T Consensus 83 T 83 (135)
T PF01488_consen 83 T 83 (135)
T ss_dssp S
T ss_pred c
Confidence 4
No 461
>PRK07062 short chain dehydrogenase; Provisional
Probab=72.54 E-value=19 Score=32.59 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..++++|-.|++.| .++..+++.|+ +|++++.++ .++.+.+.+....-..++.++..|+.+..- .
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 35789999997765 23333444566 899999887 666555544433211357788888876420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|++|...
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 25689988753
No 462
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=72.42 E-value=9.9 Score=36.53 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce---eecc-CCCCce
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIE-LPVTKV 190 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~-~~~~~~ 190 (379)
....+|.+||-.|+|. |.++..+|+ .|+.+|+++|.++ ..+.+++ .|...-+.....+. ..+. +....+
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCC
Confidence 4567899999998753 455555666 5776899999988 7777754 34321111111000 0010 112468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCC-EEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDD-GIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~li 226 (379)
|+|+-. .+ . ...+....+.|+++ |.++
T Consensus 256 d~vid~-~g-------~-~~~~~~~~~~l~~~~G~~v 283 (365)
T cd08277 256 DYSFEC-TG-------N-ADLMNEALESTKLGWGVSV 283 (365)
T ss_pred CEEEEC-CC-------C-hHHHHHHHHhcccCCCEEE
Confidence 988842 21 1 13445556778875 8876
No 463
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.26 E-value=24 Score=33.99 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
.+.+||-+|||. | ..+..+++.|.++++.+|.+. .++.|.+++.+..-.-+|+.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 457999999985 3 456677778999999888642 344555566554322234444433
Q ss_pred eeec---cCCCCceeEEEEe
Q 016992 180 IEEI---ELPVTKVDIIISE 196 (379)
Q Consensus 180 ~~~~---~~~~~~~D~Iv~~ 196 (379)
+..- .+ ...+|+|+..
T Consensus 107 i~~~~~~~~-~~~~DvVvd~ 125 (355)
T PRK05597 107 LTWSNALDE-LRDADVILDG 125 (355)
T ss_pred cCHHHHHHH-HhCCCEEEEC
Confidence 3321 11 2579999964
No 464
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=72.25 E-value=16 Score=32.71 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------
Q 016992 120 LFKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE---------- 184 (379)
Q Consensus 120 ~~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 184 (379)
..++++||-.|+ +|.++..+++ .|. +|++++.+. .++...+.+...+. .++.++..|+....
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHH
Confidence 357889999996 4555554444 465 999999887 66555555554443 34677777764221
Q ss_pred --CCCCceeEEEEec
Q 016992 185 --LPVTKVDIIISEW 197 (379)
Q Consensus 185 --~~~~~~D~Iv~~~ 197 (379)
-..+++|+||...
T Consensus 86 ~~~~~~~id~vi~~A 100 (247)
T PRK08945 86 IEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 0124689998753
No 465
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=72.14 E-value=8.9 Score=38.34 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCceeEEEEe
Q 016992 120 LFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVDIIISE 196 (379)
Q Consensus 120 ~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~~ 196 (379)
...|++|+-+|+|. |......++ .|+ +|+.+|.++ ....+.. .|. ++. ++.++ + ...|+|++.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~----~G~----~~~--~leel-l--~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAM----EGY----QVV--TLEDV-V--ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHh----cCc----eec--cHHHH-H--hcCCEEEEC
Confidence 46789999999986 322222222 466 899998887 4433322 232 222 23332 1 468999864
Q ss_pred cCccccCChhhHHHHH-HHHHhcccCCEEEE
Q 016992 197 WMGYFLLFENMLNTVL-YARDKWLVDDGIVL 226 (379)
Q Consensus 197 ~~~~~l~~~~~~~~~l-~~~~~~LkpgG~li 226 (379)
. + . ..++ ......+|||++++
T Consensus 317 t-G-------t-~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 317 T-G-------N-KDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred C-C-------c-ccccCHHHHhccCCCcEEE
Confidence 2 1 1 1233 35567899999988
No 466
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=72.04 E-value=23 Score=35.96 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=61.7
Q ss_pred CCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH-------cCC---------CCcEEEEEcceeec
Q 016992 123 DKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA-------NGF---------SNVITVLKGKIEEI 183 (379)
Q Consensus 123 ~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 183 (379)
-++|--||+|+ | .++..+++.|. .|+..|.++ .++.+.+++.. .|. -.++++.. +..++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~-~~~~~ 84 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVE-ALADL 84 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CHHHh
Confidence 35788999996 3 56666777776 999999999 88887555432 121 01244332 33322
Q ss_pred cCCCCceeEEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCCc
Q 016992 184 ELPVTKVDIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKAS 231 (379)
Q Consensus 184 ~~~~~~~D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~ 231 (379)
...|+|+-.. .........++..+...++|+.++.-++.+
T Consensus 85 ----~~aDlViEav----~E~~~vK~~vf~~l~~~~~~~ailasntSt 124 (507)
T PRK08268 85 ----ADCDLVVEAI----VERLDVKQALFAQLEAIVSPDCILATNTSS 124 (507)
T ss_pred ----CCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 3679998543 233344566777788888888777544433
No 467
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=71.55 E-value=19 Score=34.90 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH-------------------H-HHHHHHHHHHHcCCCCcEEEEEcc
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS-------------------Q-MANMAKQIVEANGFSNVITVLKGK 179 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s-------------------~-~~~~a~~~~~~~~~~~~i~~~~~d 179 (379)
.+.+||-+|||. | ..+..+++.|.++++.+|.+ . .++.+++++.+..-.-+|+.+...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 456899999995 3 55566677898999999876 2 344455555543322234555443
Q ss_pred eeeccCC--CCceeEEEEe
Q 016992 180 IEEIELP--VTKVDIIISE 196 (379)
Q Consensus 180 ~~~~~~~--~~~~D~Iv~~ 196 (379)
+..-... -..+|+|+..
T Consensus 120 i~~~~~~~~~~~~DlVid~ 138 (370)
T PRK05600 120 LTAENAVELLNGVDLVLDG 138 (370)
T ss_pred cCHHHHHHHHhCCCEEEEC
Confidence 3321100 2568999853
No 468
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=71.51 E-value=19 Score=32.65 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ 155 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~ 155 (379)
.+.+|+-+|||. | ..+..+++.|.++++.+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 456899999984 4 556677778988998887543
No 469
>PRK06128 oxidoreductase; Provisional
Probab=71.51 E-value=46 Score=30.83 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCCCchHHHHH----HHcCCCEEEEEecHH---HHHHHHHHHHHcCCCCcEEEEEcceeeccC--------
Q 016992 121 FKDKVVLDVGAGTGILSLFC----AKAGAAHVYAVECSQ---MANMAKQIVEANGFSNVITVLKGKIEEIEL-------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~l----a~~g~~~v~~vD~s~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------- 185 (379)
..+++||-.|++.| ++..+ ++.|+ +|+.+..+. ..+...+.+...+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~g-IG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~ 128 (300)
T PRK06128 53 LQGRKALITGADSG-IGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERA 128 (300)
T ss_pred cCCCEEEEecCCCc-HHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHH
Confidence 35789999996554 44444 44566 777665432 2233333344333 357788888876420
Q ss_pred --CCCceeEEEEec
Q 016992 186 --PVTKVDIIISEW 197 (379)
Q Consensus 186 --~~~~~D~Iv~~~ 197 (379)
..+..|++|.+.
T Consensus 129 ~~~~g~iD~lV~nA 142 (300)
T PRK06128 129 VKELGGLDILVNIA 142 (300)
T ss_pred HHHhCCCCEEEECC
Confidence 024689999764
No 470
>PRK12937 short chain dehydrogenase; Provisional
Probab=71.45 E-value=48 Score=29.28 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCCEEEEEcCCCchHHHHHH----HcCCCEEEEEecH-H-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C----
Q 016992 121 FKDKVVLDVGAGTGILSLFCA----KAGAAHVYAVECS-Q-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L---- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s-~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 185 (379)
.++++||-.|++. .++..++ +.|. +|+.+..+ + ..+...+.+...+ .++.++..|+.+.. +
T Consensus 3 ~~~~~vlItG~~~-~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 78 (245)
T PRK12937 3 LSNKVAIVTGASR-GIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAE 78 (245)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHH
Confidence 3567899999854 4444444 4566 66655432 3 3333333343333 45888888886542 0
Q ss_pred -CCCceeEEEEec
Q 016992 186 -PVTKVDIIISEW 197 (379)
Q Consensus 186 -~~~~~D~Iv~~~ 197 (379)
..+..|+++...
T Consensus 79 ~~~~~id~vi~~a 91 (245)
T PRK12937 79 TAFGRIDVLVNNA 91 (245)
T ss_pred HHcCCCCEEEECC
Confidence 024689998753
No 471
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.45 E-value=20 Score=32.04 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=47.2
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.++++||-.|++.| .++..+++.|. +|++++.+. .++...+.+...+ .++.++..|+.+..- .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35678999998765 23333444576 899999887 6655555554433 346778888765420 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|++|...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 14689998754
No 472
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=71.43 E-value=11 Score=35.66 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=52.5
Q ss_pred CCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce---eecc--CCCCce
Q 016992 119 FLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI---EEIE--LPVTKV 190 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~--~~~~~~ 190 (379)
...++.+||-.|+|. |..+..+|+ .|..+|++++.++ ..+.+++ .|. + .++..+- ..+. .+...+
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGA-D--HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCC-c--EEEcCCccHHHHHHHHhCCCCC
Confidence 356788999999653 344444555 4645889998887 6665543 343 1 1221111 1110 122468
Q ss_pred eEEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 191 DIIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 191 D~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
|+|+.. .+ . ...+....+.|+++|.++
T Consensus 237 dvvld~-~g-------~-~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 237 DAVIDF-VG-------S-DETLALAAKLLAKGGRYV 263 (340)
T ss_pred CEEEEc-CC-------C-HHHHHHHHHHhhcCCEEE
Confidence 999852 11 1 234556668889999987
No 473
>PRK05876 short chain dehydrogenase; Provisional
Probab=71.30 E-value=20 Score=32.95 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..++++|-.|++.| .++..+++.|. +|+.++.+. .++.+.+.+...+ .++.++..|+.+... .
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45788999888765 23333444576 799999887 6655544454444 347888888876430 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.++.|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 24689999754
No 474
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=71.22 E-value=5.3 Score=39.60 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCCchHHHHH--HHcCCCEEE------EEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccCCCCcee
Q 016992 121 FKDKVVLDVGAGTGILSLFC--AKAGAAHVY------AVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIELPVTKVD 191 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~l--a~~g~~~v~------~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 191 (379)
..+++|+-||||+=+.+..+ ...|. .|+ +||... ..+.| ...|+. + .+..+. ....|
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA----~~dGF~----v--~~~~Ea---~~~AD 99 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKA----TENGFK----V--GTYEEL---IPQAD 99 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHH----HhcCCc----c--CCHHHH---HHhCC
Confidence 57899999999973221111 11244 333 334334 43333 334542 1 233333 26789
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEEecCC
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLPDKA 230 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~ 230 (379)
+|+.-.++ + .-..+...+...||||..|.++..
T Consensus 100 vVviLlPD-----t-~q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 100 LVINLTPD-----K-QHSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred EEEEcCCh-----H-HHHHHHHHHHhhCCCCCEEEecCC
Confidence 99975432 2 234555788899999999987654
No 475
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=71.22 E-value=15 Score=34.61 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCEEEEEcCCC--chHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcc-------eeeccCCCCceeEE
Q 016992 123 DKVVLDVGAGT--GILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGK-------IEEIELPVTKVDII 193 (379)
Q Consensus 123 ~~~VLDlGcG~--G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d-------~~~~~~~~~~~D~I 193 (379)
..+|+-+|+|. |.++..+++.|. .|+.+..+.. +.+..+|+. +.-..++ +.........+|+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~-----~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY-----EAVRENGLQ--VDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH-----HHHHhCCeE--EEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 35899999986 466777777765 7777776541 113333421 1111111 11111112578999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+...-. .....++..+..++++++.+++
T Consensus 77 ilavK~------~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 77 LVGLKT------TANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred EEEecC------CChHhHHHHHhhhcCCCCEEEE
Confidence 864321 1235667777778888887763
No 476
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=71.21 E-value=8.8 Score=32.16 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=54.9
Q ss_pred EEEEEcCCCchHHH--HHHHcCCCEEEEEecHH-HHHHHHHHHHH------cCCCCcEEEEEcceeeccCCCCceeEEEE
Q 016992 125 VVLDVGAGTGILSL--FCAKAGAAHVYAVECSQ-MANMAKQIVEA------NGFSNVITVLKGKIEEIELPVTKVDIIIS 195 (379)
Q Consensus 125 ~VLDlGcG~G~~~~--~la~~g~~~v~~vD~s~-~~~~a~~~~~~------~~~~~~i~~~~~d~~~~~~~~~~~D~Iv~ 195 (379)
+|.-||+|.++.++ .++..| .+|+-...++ .++..++.-.. ..++.++.+ ..|..+.- ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEe
Confidence 46778988875544 344555 4899999888 77666553221 111233433 33443321 45799987
Q ss_pred ecCccccCChhhHHHHHHHHHhcccCCEEEEec
Q 016992 196 EWMGYFLLFENMLNTVLYARDKWLVDDGIVLPD 228 (379)
Q Consensus 196 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~ 228 (379)
..+. ...+.+++.+..+|+++-.++..
T Consensus 76 avPs------~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 76 AVPS------QAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -S-G------GGHHHHHHHHTTTSHTT-EEEET
T ss_pred cccH------HHHHHHHHHHhhccCCCCEEEEe
Confidence 5433 23578899999999888887743
No 477
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=71.19 E-value=19 Score=28.02 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=44.9
Q ss_pred EEEEEcCCCchHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHcCCCCcEEEEEcceeeccC--CCCceeEEEEecCcccc
Q 016992 125 VVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKQIVEANGFSNVITVLKGKIEEIEL--PVTKVDIIISEWMGYFL 202 (379)
Q Consensus 125 ~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~Iv~~~~~~~l 202 (379)
+|| +.||+|..+-.+++ ..++.++.+|++ +++.+....++.. ....+|+|+..
T Consensus 3 kIL-lvCg~G~STSlla~----------------k~k~~~~e~gi~--~~i~a~~~~e~~~~~~~~~~DvIll~------ 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAK----------------KTTEYLKEQGKD--IEVDAITATEGEKAIAAAEYDLYLVS------ 57 (104)
T ss_pred EEE-EECCCchHHHHHHH----------------HHHHHHHHCCCc--eEEEEecHHHHHHhhccCCCCEEEEC------
Confidence 455 56888876555444 346667778874 7777777766542 22468999963
Q ss_pred CChhhHHHHHHHHHhcccCCEE
Q 016992 203 LFENMLNTVLYARDKWLVDDGI 224 (379)
Q Consensus 203 ~~~~~~~~~l~~~~~~LkpgG~ 224 (379)
+.+...+..+...+.+.|.
T Consensus 58 ---PQi~~~~~~i~~~~~~~~i 76 (104)
T PRK09590 58 ---PQTKMYFKQFEEAGAKVGK 76 (104)
T ss_pred ---hHHHHHHHHHHHHhhhcCC
Confidence 3455556666666655544
No 478
>PRK07904 short chain dehydrogenase; Provisional
Probab=71.02 E-value=19 Score=32.50 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=47.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-H-HHHHHHHHHHcCCCCcEEEEEcceeecc-----C----
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-M-ANMAKQIVEANGFSNVITVLKGKIEEIE-----L---- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~-~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~---- 185 (379)
..+++||-.|++. .++..+++ .|..+|+.++.++ . ++.+.+.+...+- .++.++.+|+.+.. .
T Consensus 6 ~~~~~vlItGas~-giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGGTS-EIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcCCc-HHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 4567899999865 44444443 4435899988776 4 5555555555442 35889999987543 1
Q ss_pred CCCceeEEEEe
Q 016992 186 PVTKVDIIISE 196 (379)
Q Consensus 186 ~~~~~D~Iv~~ 196 (379)
..+..|+++..
T Consensus 84 ~~g~id~li~~ 94 (253)
T PRK07904 84 AGGDVDVAIVA 94 (253)
T ss_pred hcCCCCEEEEe
Confidence 12478988864
No 479
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=70.78 E-value=51 Score=32.02 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=57.0
Q ss_pred HHhccCCCCCCEEEEEcCCCch----HHHHHHHc--C--CCEEEEEec----HH-HHHHHHHHH----HHcCCCCcEEEE
Q 016992 114 IYQNKFLFKDKVVLDVGAGTGI----LSLFCAKA--G--AAHVYAVEC----SQ-MANMAKQIV----EANGFSNVITVL 176 (379)
Q Consensus 114 i~~~~~~~~~~~VLDlGcG~G~----~~~~la~~--g--~~~v~~vD~----s~-~~~~a~~~~----~~~~~~~~i~~~ 176 (379)
|.+.....+.-+|+|+|.|.|. +...++.. | .-+||||+. +. .++.+.+++ +..|++ .+|.
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~ 179 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFH 179 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEE
Confidence 3333334456689999999993 33344443 2 248999999 66 665554444 445665 4444
Q ss_pred E---cceeecc---CCCCceeEEEEecCccccCChh--------hHHHHHHHHHhcccCCEEEE
Q 016992 177 K---GKIEEIE---LPVTKVDIIISEWMGYFLLFEN--------MLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 177 ~---~d~~~~~---~~~~~~D~Iv~~~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~li 226 (379)
. .+.+++. +....=..++.+.+ +.+++.. ....+|+.+ +-|+|.-+++
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~-~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~ 241 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCM-FQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVL 241 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEee-hhhhhhccccccccchHHHHHHHH-HhcCCCEEEE
Confidence 3 2333332 11111223333322 2222211 234566655 5689997666
No 480
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.21 E-value=15 Score=34.28 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=43.5
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcceee
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGKIEE 182 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (379)
+||-+|||. | .++..|+..|.++++.+|.+. .++.|.+.+.+..-.-+|+.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 478899883 3 455566677888999887432 234445555443322346666666654
Q ss_pred ccCC-CCceeEEEEe
Q 016992 183 IELP-VTKVDIIISE 196 (379)
Q Consensus 183 ~~~~-~~~~D~Iv~~ 196 (379)
.... -.+||+|++.
T Consensus 81 ~~~~f~~~fdvVi~a 95 (291)
T cd01488 81 KDEEFYRQFNIIICG 95 (291)
T ss_pred hhHHHhcCCCEEEEC
Confidence 3211 2579999963
No 481
>PRK08328 hypothetical protein; Provisional
Probab=70.19 E-value=14 Score=33.30 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCC-c-hHHHHHHHcCCCEEEEEecH
Q 016992 122 KDKVVLDVGAGT-G-ILSLFCAKAGAAHVYAVECS 154 (379)
Q Consensus 122 ~~~~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s 154 (379)
.+.+|+-+|||. | ..+..+++.|.++++.+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 456899999994 4 55667777899999999843
No 482
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=70.11 E-value=52 Score=30.71 Aligned_cols=93 Identities=20% Similarity=0.133 Sum_probs=54.7
Q ss_pred cCCCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-CCCCceeEE
Q 016992 118 KFLFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-LPVTKVDII 193 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~I 193 (379)
....++.+||-.|+| .|..+..+++ .|. +|++++.++ ..+.+++ .+.. .++...-.... ...+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhccCCCCEE
Confidence 445778899999886 5666666666 465 899999888 7776643 2321 11111111110 011458988
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
+... + . ...+....+.|+++|.++.
T Consensus 230 i~~~-~----~----~~~~~~~~~~l~~~G~~i~ 254 (330)
T cd08245 230 LVTV-V----S----GAAAEAALGGLRRGGRIVL 254 (330)
T ss_pred EECC-C----c----HHHHHHHHHhcccCCEEEE
Confidence 8421 1 0 1245556688999998873
No 483
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=69.98 E-value=18 Score=36.72 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHH-c--C--CCEEEEEecHH-HHHHHHHHHHHcCCC-CcEEEEEcceeec-cC-CCCceeE
Q 016992 122 KDKVVLDVGAGTGILSLFCAK-A--G--AAHVYAVECSQ-MANMAKQIVEANGFS-NVITVLKGKIEEI-EL-PVTKVDI 192 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la~-~--g--~~~v~~vD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~-~~~~~D~ 192 (379)
++..|.|..||+|.+.....+ . | ...++|-+... +...++.+..-.+.. +......+|...- .. ...+||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 567899999999988776544 2 2 24799999999 999998886655542 2233334443221 11 2356999
Q ss_pred EEEecC
Q 016992 193 IISEWM 198 (379)
Q Consensus 193 Iv~~~~ 198 (379)
|+++++
T Consensus 297 v~~NpP 302 (501)
T TIGR00497 297 VVSNPP 302 (501)
T ss_pred EeecCC
Confidence 998864
No 484
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.94 E-value=21 Score=31.81 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCch---HHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----CC
Q 016992 122 KDKVVLDVGAGTGI---LSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G~---~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 187 (379)
.++++|-.|++.|. ++..+++.|. +|+.++.+. .++.+.+.+...+ ..+..+..|..+.. + ..
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999873 4555566676 899999888 7766655555544 33666666765432 0 01
Q ss_pred C-ceeEEEEec
Q 016992 188 T-KVDIIISEW 197 (379)
Q Consensus 188 ~-~~D~Iv~~~ 197 (379)
+ .+|+++.+.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 4 789998864
No 485
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.77 E-value=11 Score=35.11 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=36.7
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHH
Q 016992 119 FLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEA 166 (379)
Q Consensus 119 ~~~~~~~VLDlGcG~G~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~ 166 (379)
....|.+|.-+|+|.-...-.+++.++ +|.+||+++ .+..-+-++..
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHHH
Confidence 346788999999998777777888765 999999999 77766555443
No 486
>PRK09291 short chain dehydrogenase; Provisional
Probab=69.66 E-value=24 Score=31.58 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=44.2
Q ss_pred CCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----CCCCceeEE
Q 016992 123 DKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----LPVTKVDII 193 (379)
Q Consensus 123 ~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~D~I 193 (379)
+++||-.|++. .++..++ +.|. +|++++.++ ............+. ++.++.+|+.+.. .-...+|+|
T Consensus 2 ~~~vlVtGasg-~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 2 SKTILITGAGS-GFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 35788888755 4444444 4465 888888776 55555544444442 4788888887642 112478999
Q ss_pred EEe
Q 016992 194 ISE 196 (379)
Q Consensus 194 v~~ 196 (379)
|..
T Consensus 78 i~~ 80 (257)
T PRK09291 78 LNN 80 (257)
T ss_pred EEC
Confidence 975
No 487
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.44 E-value=24 Score=31.60 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc-----C-----CC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE-----L-----PV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~-----~~ 187 (379)
.++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+.. + ..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 5678998887765 23334445576 899999887 6666555555544 35788888886642 0 12
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+.+|++|...
T Consensus 82 ~~id~li~~a 91 (254)
T PRK07478 82 GGLDIAFNNA 91 (254)
T ss_pred CCCCEEEECC
Confidence 4689998764
No 488
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=69.17 E-value=23 Score=32.03 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 121 FKDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 121 ~~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
..++++|-.|++.| .++..+++.|+ +|+.++.++ .++.+.+.+...+ .++.++.+|+.+..- .
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 36788999998875 23344455576 788888887 6666665565543 358888899875420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|++|...
T Consensus 85 ~~~id~li~~a 95 (265)
T PRK07097 85 VGVIDILVNNA 95 (265)
T ss_pred CCCCCEEEECC
Confidence 25689999764
No 489
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=68.99 E-value=38 Score=27.57 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=41.2
Q ss_pred EEEEEcCCC-c-hHHHHHHHcCCCEEEEEecHH--------------------HHHHHHHHHHHcCCCCcEEEEEcceee
Q 016992 125 VVLDVGAGT-G-ILSLFCAKAGAAHVYAVECSQ--------------------MANMAKQIVEANGFSNVITVLKGKIEE 182 (379)
Q Consensus 125 ~VLDlGcG~-G-~~~~~la~~g~~~v~~vD~s~--------------------~~~~a~~~~~~~~~~~~i~~~~~d~~~ 182 (379)
+|+-+|||. | .++..+++.|.++++.+|.+. .++.+++.+++..-.-+++.+......
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 478899973 4 455667777888999998551 234455555554322234444443332
Q ss_pred cc--CCCCceeEEEEe
Q 016992 183 IE--LPVTKVDIIISE 196 (379)
Q Consensus 183 ~~--~~~~~~D~Iv~~ 196 (379)
.. .....+|+|++.
T Consensus 81 ~~~~~~~~~~diVi~~ 96 (143)
T cd01483 81 DNLDDFLDGVDLVIDA 96 (143)
T ss_pred hhHHHHhcCCCEEEEC
Confidence 11 002579999964
No 490
>PRK09242 tropinone reductase; Provisional
Probab=68.92 E-value=26 Score=31.50 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeecc----------CCC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIE----------LPV 187 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 187 (379)
.++++|-.|++.| .++..+++.|+ +|+.++.+. .++...+.+....-..++.++.+|+.+.. -..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999998664 23333444566 899999887 66555554444311245888888886532 012
Q ss_pred CceeEEEEec
Q 016992 188 TKVDIIISEW 197 (379)
Q Consensus 188 ~~~D~Iv~~~ 197 (379)
+++|+|+...
T Consensus 87 g~id~li~~a 96 (257)
T PRK09242 87 DGLHILVNNA 96 (257)
T ss_pred CCCCEEEECC
Confidence 5689988753
No 491
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.89 E-value=24 Score=31.32 Aligned_cols=72 Identities=21% Similarity=0.198 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 122 KDKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
+++++|-.|++. .++..++ +.|. +|+.++.++ .++.+.+.+...+ .++.+++.|+.+... .
T Consensus 4 ~~~~~lItG~~g-~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGGAQ-GLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 577899998754 4444444 3465 899999987 6665555555443 457888888765320 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|+||...
T Consensus 80 ~~~id~vi~~a 90 (253)
T PRK08217 80 FGQLNGLINNA 90 (253)
T ss_pred cCCCCEEEECC
Confidence 14689999753
No 492
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=68.80 E-value=10 Score=35.95 Aligned_cols=94 Identities=24% Similarity=0.310 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCC-CchHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c-c-CCCCceeEE
Q 016992 120 LFKDKVVLDVGAG-TGILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I-E-LPVTKVDII 193 (379)
Q Consensus 120 ~~~~~~VLDlGcG-~G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~-~~~~~~D~I 193 (379)
..++.+||-.|+| .|..+..+++ .|...|++++.++ ..+.+++ .|...-+.....+..+ + . .....+|+|
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 4578888887764 2445555666 4665588888877 6666544 2331111111111111 1 0 123568999
Q ss_pred EEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 194 ISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 194 v~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+... + . ...+....+.|+++|.++
T Consensus 235 ld~~-g----~----~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 235 LEMS-G----A----PKALEQGLQAVTPGGRVS 258 (340)
T ss_pred EECC-C----C----HHHHHHHHHhhcCCCEEE
Confidence 8521 1 1 134556678889999887
No 493
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=68.78 E-value=35 Score=31.62 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=50.1
Q ss_pred EEEEEcCCCc--hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCC---CcEEEEEcceeeccCCCCceeEEEEecC
Q 016992 125 VVLDVGAGTG--ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFS---NVITVLKGKIEEIELPVTKVDIIISEWM 198 (379)
Q Consensus 125 ~VLDlGcG~G--~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~D~Iv~~~~ 198 (379)
+|+-+|+|.- .++..+++.|. +|+.++.++ .++..++ .|+. ........-..+... ...+|+|+...-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhH-cCCCCEEEEecc
Confidence 5888999863 34555556664 899999866 5544432 2331 111100000011111 257899986532
Q ss_pred ccccCChhhHHHHHHHHHhcccCCEEEEe
Q 016992 199 GYFLLFENMLNTVLYARDKWLVDDGIVLP 227 (379)
Q Consensus 199 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 227 (379)
. ..+..++..+...+.++..++.
T Consensus 76 ~------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 76 A------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred c------ccHHHHHHHHhhhcCCCCEEEE
Confidence 1 2356777777777877766663
No 494
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=68.53 E-value=21 Score=36.80 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCCchH--HHHHHHcCCCEEEEEecHH-HH--H---HHHHHHHHcCCCCcEEEEEcceee---ccCCCCce
Q 016992 122 KDKVVLDVGAGTGIL--SLFCAKAGAAHVYAVECSQ-MA--N---MAKQIVEANGFSNVITVLKGKIEE---IELPVTKV 190 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~--~~~la~~g~~~v~~vD~s~-~~--~---~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~ 190 (379)
...+|+-+|.|.... ...++..|..++.++|.+. .- . ...+.+++.+ ..|.+...+... +..--+.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n--~~v~v~~i~~~~~~dl~ev~~~~ 205 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETD--DALLVQEIDFAEDQHLHEAFEPA 205 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhC--CCCceEeccCCcchhHHHhhcCC
Confidence 567899999998533 3445667889999997654 22 2 2233333322 334444433211 11113678
Q ss_pred eEEEEe
Q 016992 191 DIIISE 196 (379)
Q Consensus 191 D~Iv~~ 196 (379)
|+|++-
T Consensus 206 DiVi~v 211 (637)
T TIGR03693 206 DWVLYV 211 (637)
T ss_pred cEEEEE
Confidence 999974
No 495
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=68.09 E-value=26 Score=31.48 Aligned_cols=72 Identities=25% Similarity=0.298 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHH----HHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 122 KDKVVLDVGAGTGILSLF----CAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~----la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+++||-.|++.| ++.. +++.|+ +|+.++.+. .++.+...+...+ .++.++..|+.+... .
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5789999997665 3333 444565 788888777 6655544444433 357788888876431 0
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+++|+++...
T Consensus 86 ~~~~d~li~~a 96 (255)
T PRK06113 86 LGKVDILVNNA 96 (255)
T ss_pred cCCCCEEEECC
Confidence 24689998753
No 496
>PRK09072 short chain dehydrogenase; Provisional
Probab=68.02 E-value=24 Score=31.86 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCc---hHHHHHHHcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC---------CCC
Q 016992 122 KDKVVLDVGAGTG---ILSLFCAKAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------PVT 188 (379)
Q Consensus 122 ~~~~VLDlGcG~G---~~~~~la~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~~~ 188 (379)
+++++|-.|++.| .++..+++.|+ +|++++.++ .++.....+ .. +.++.++..|+.+... ..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 4678999987764 23444455576 899999887 665554444 22 2468888888876431 024
Q ss_pred ceeEEEEec
Q 016992 189 KVDIIISEW 197 (379)
Q Consensus 189 ~~D~Iv~~~ 197 (379)
.+|+|+...
T Consensus 80 ~id~lv~~a 88 (263)
T PRK09072 80 GINVLINNA 88 (263)
T ss_pred CCCEEEECC
Confidence 679998753
No 497
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=67.88 E-value=10 Score=35.92 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceee-c--cCCCCceeEEE
Q 016992 121 FKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEE-I--ELPVTKVDIII 194 (379)
Q Consensus 121 ~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~~~D~Iv 194 (379)
.+|.+||-.|+|. |..+..+++ .|..+|++++.++ ..+.+++ .|...-+.....+..+ + ......+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 4788888887654 555566666 5766788888777 6666544 3431111111111100 1 01235689888
Q ss_pred EecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 195 SEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 195 ~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
.. .+ . ...+....+.|+++|.++
T Consensus 238 d~-~g----~----~~~~~~~~~~l~~~G~~v 260 (341)
T PRK05396 238 EM-SG----A----PSAFRQMLDNMNHGGRIA 260 (341)
T ss_pred EC-CC----C----HHHHHHHHHHHhcCCEEE
Confidence 42 11 1 234455567889999987
No 498
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.88 E-value=10 Score=35.93 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=54.4
Q ss_pred cCCCCCCEEEEEcCCC-chHHHHHHH-cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcce-eecc--CCCCcee
Q 016992 118 KFLFKDKVVLDVGAGT-GILSLFCAK-AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKI-EEIE--LPVTKVD 191 (379)
Q Consensus 118 ~~~~~~~~VLDlGcG~-G~~~~~la~-~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~D 191 (379)
....++..||-.|||. |..+..+|+ .|...+++++.++ ..+.+++ .|...-+.....+. ..+. .+...+|
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~~~~~~i~~~~~~~~~d 239 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGATDIVAERGEEAVARVRELTGGVGAD 239 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCceEecCCcccHHHHHHHhcCCCCCC
Confidence 3456788888888653 455556666 5776799999887 6555543 34311111111111 1111 1224689
Q ss_pred EEEEecCccccCChhhHHHHHHHHHhcccCCEEEE
Q 016992 192 IIISEWMGYFLLFENMLNTVLYARDKWLVDDGIVL 226 (379)
Q Consensus 192 ~Iv~~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 226 (379)
+++.. .+ . ...+....+.|+++|.++
T Consensus 240 ~il~~-~g-------~-~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 240 AVLEC-VG-------T-QESMEQAIAIARPGGRVG 265 (345)
T ss_pred EEEEC-CC-------C-HHHHHHHHHhhccCCEEE
Confidence 88842 11 1 235666678889999987
No 499
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=67.73 E-value=27 Score=31.43 Aligned_cols=73 Identities=23% Similarity=0.191 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHH----cCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------
Q 016992 121 FKDKVVLDVGAGTGILSLFCAK----AGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL---------- 185 (379)
Q Consensus 121 ~~~~~VLDlGcG~G~~~~~la~----~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 185 (379)
.+++++|-.|+ +|.++..+++ .|+ +|+.++.+. .++...+.+...+ .++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999995 5566666555 366 899999887 7766665555443 457888999876421
Q ss_pred CCCceeEEEEec
Q 016992 186 PVTKVDIIISEW 197 (379)
Q Consensus 186 ~~~~~D~Iv~~~ 197 (379)
..+.+|+|+...
T Consensus 86 ~~~~id~vi~~a 97 (259)
T PRK08213 86 RFGHVDILVNNA 97 (259)
T ss_pred HhCCCCEEEECC
Confidence 014689998753
No 500
>PRK05866 short chain dehydrogenase; Provisional
Probab=67.64 E-value=26 Score=32.55 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCchHHHHHH----HcCCCEEEEEecHH-HHHHHHHHHHHcCCCCcEEEEEcceeeccC----------C
Q 016992 122 KDKVVLDVGAGTGILSLFCA----KAGAAHVYAVECSQ-MANMAKQIVEANGFSNVITVLKGKIEEIEL----------P 186 (379)
Q Consensus 122 ~~~~VLDlGcG~G~~~~~la----~~g~~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~ 186 (379)
.+++||-.|++.| ++..++ +.|. +|++++.+. .++...+.+...+ ..+.++.+|+.+... .
T Consensus 39 ~~k~vlItGasgg-IG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999997654 444443 4465 899999887 6665555454433 347788888876420 1
Q ss_pred CCceeEEEEec
Q 016992 187 VTKVDIIISEW 197 (379)
Q Consensus 187 ~~~~D~Iv~~~ 197 (379)
.+.+|++|...
T Consensus 115 ~g~id~li~~A 125 (293)
T PRK05866 115 IGGVDILINNA 125 (293)
T ss_pred cCCCCEEEECC
Confidence 24789999753
Done!