Query 016993
Match_columns 379
No_of_seqs 162 out of 888
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.4 0.002 6.9E-08 48.2 11.4 82 187-350 3-86 (95)
2 4fxv_A ELAV-like protein 1; RN 97.4 0.0012 4.1E-08 50.3 10.0 37 187-229 17-53 (99)
3 3s8s_A Histone-lysine N-methyl 97.3 0.0015 5.2E-08 50.7 10.0 80 187-348 4-85 (110)
4 4a8x_A RNA-binding protein wit 97.3 0.0014 4.7E-08 48.3 9.0 37 187-229 2-38 (88)
5 2jrs_A RNA-binding protein 39; 97.3 0.003 1E-07 48.8 11.1 84 186-351 23-108 (108)
6 1fxl_A Paraneoplastic encephal 97.3 0.0035 1.2E-07 51.6 12.2 105 188-374 1-113 (167)
7 2lxi_A RNA-binding protein 10; 97.2 0.00076 2.6E-08 50.5 6.8 33 189-226 1-33 (91)
8 1x5s_A Cold-inducible RNA-bind 97.2 0.0046 1.6E-07 46.9 11.1 37 187-229 10-46 (102)
9 2lkz_A RNA-binding protein 5; 97.2 0.0011 3.8E-08 50.2 7.4 38 187-228 7-44 (95)
10 3mdf_A Peptidyl-prolyl CIS-tra 97.2 0.0026 8.9E-08 46.4 9.2 37 187-229 5-41 (85)
11 3md1_A Nuclear and cytoplasmic 97.2 0.0043 1.5E-07 45.0 10.2 34 190-229 2-35 (83)
12 3p5t_L Cleavage and polyadenyl 97.1 0.0018 6.2E-08 48.1 8.0 81 190-350 2-84 (90)
13 1whw_A Hypothetical protein ri 97.1 0.0042 1.4E-07 46.8 10.2 36 187-228 6-41 (99)
14 2dgp_A Bruno-like 4, RNA bindi 97.1 0.0064 2.2E-07 46.4 11.4 36 187-228 11-46 (106)
15 2dgs_A DAZ-associated protein 97.1 0.0072 2.5E-07 45.5 11.3 37 187-229 8-44 (99)
16 2x1f_A MRNA 3'-END-processing 97.1 0.004 1.4E-07 46.7 9.8 34 189-228 2-35 (96)
17 2do4_A Squamous cell carcinoma 97.1 0.0064 2.2E-07 45.9 10.9 37 187-229 15-51 (100)
18 3bs9_A Nucleolysin TIA-1 isofo 97.1 0.0035 1.2E-07 45.9 9.1 37 187-229 4-40 (87)
19 3nmr_A Cugbp ELAV-like family 97.1 0.0065 2.2E-07 50.5 11.9 107 188-374 2-120 (175)
20 2dnh_A Bruno-like 5, RNA bindi 97.1 0.0089 3E-07 45.5 11.6 37 187-229 13-49 (105)
21 2cph_A RNA binding motif prote 97.0 0.0085 2.9E-07 45.7 11.3 38 186-229 12-49 (107)
22 1x5u_A Splicing factor 3B subu 97.0 0.0069 2.4E-07 46.1 10.7 37 187-229 13-49 (105)
23 2cpz_A CUG triplet repeat RNA- 97.0 0.007 2.4E-07 47.0 10.9 37 187-229 23-59 (115)
24 4f25_A Polyadenylate-binding p 97.0 0.0055 1.9E-07 47.8 10.2 36 188-229 4-39 (115)
25 2e5h_A Zinc finger CCHC-type a 97.0 0.005 1.7E-07 45.9 9.3 38 186-229 13-50 (94)
26 1x5t_A Splicing factor 3B subu 97.0 0.004 1.4E-07 46.6 8.8 33 187-225 3-35 (96)
27 2dgv_A HnRNP M, heterogeneous 97.0 0.0089 3E-07 44.3 10.7 37 187-229 6-42 (92)
28 2fy1_A RNA-binding motif prote 97.0 0.008 2.7E-07 47.0 10.8 37 187-229 5-41 (116)
29 1b7f_A Protein (SXL-lethal pro 96.9 0.0076 2.6E-07 49.7 11.1 104 188-373 2-113 (168)
30 2d9p_A Polyadenylate-binding p 96.9 0.0086 3E-07 45.4 10.6 37 187-229 13-49 (103)
31 1p27_B RNA-binding protein 8A; 96.9 0.011 3.6E-07 45.1 11.0 37 187-229 21-57 (106)
32 2dnp_A RNA-binding protein 14; 96.9 0.01 3.6E-07 43.8 10.6 35 187-227 7-41 (90)
33 2dgo_A Cytotoxic granule-assoc 96.9 0.0094 3.2E-07 46.2 10.6 37 187-229 13-49 (115)
34 2dgt_A RNA-binding protein 30; 96.9 0.011 3.7E-07 43.9 10.5 36 186-227 7-42 (92)
35 2dnq_A RNA-binding protein 4B; 96.9 0.013 4.6E-07 43.2 10.7 35 187-227 6-40 (90)
36 1x4c_A Splicing factor, argini 96.8 0.006 2.1E-07 46.9 9.0 36 187-228 13-48 (108)
37 2cqg_A TDP-43, TAR DNA-binding 96.8 0.0069 2.3E-07 46.0 9.2 37 187-229 13-49 (103)
38 1h2v_Z 20 kDa nuclear CAP bind 96.8 0.0083 2.8E-07 49.4 10.1 37 187-229 37-73 (156)
39 2dnm_A SRP46 splicing factor; 96.8 0.0092 3.2E-07 45.3 9.7 36 187-228 11-46 (103)
40 1x4h_A RNA-binding protein 28; 96.8 0.01 3.5E-07 45.6 10.0 37 187-229 13-49 (111)
41 1p1t_A Cleavage stimulation fa 96.8 0.0098 3.4E-07 45.1 9.7 37 187-229 6-42 (104)
42 1wi8_A EIF-4B, eukaryotic tran 96.8 0.01 3.4E-07 45.2 9.7 37 186-229 12-48 (104)
43 2cq0_A Eukaryotic translation 96.8 0.0072 2.5E-07 45.9 8.8 37 187-229 13-49 (103)
44 2dgu_A Heterogeneous nuclear r 96.8 0.015 5.2E-07 44.1 10.5 34 187-226 9-42 (103)
45 1oo0_B CG8781-PA, drosophila Y 96.7 0.012 4.1E-07 45.2 9.9 37 186-228 23-59 (110)
46 2cqb_A Peptidyl-prolyl CIS-tra 96.7 0.0059 2E-07 46.3 8.0 36 187-228 10-45 (102)
47 1x4g_A Nucleolysin TIAR; struc 96.7 0.017 5.8E-07 44.4 10.6 36 187-228 23-58 (109)
48 3ex7_B RNA-binding protein 8A; 96.7 0.013 4.5E-07 46.2 10.2 38 186-229 19-56 (126)
49 2kt5_A RNA and export factor-b 96.7 0.013 4.4E-07 46.2 10.1 37 187-229 33-69 (124)
50 3ns6_A Eukaryotic translation 96.7 0.0049 1.7E-07 46.8 7.0 36 188-229 5-46 (100)
51 2la6_A RNA-binding protein FUS 96.6 0.018 6.2E-07 43.3 10.2 33 186-224 10-42 (99)
52 3md3_A Nuclear and cytoplasmic 96.6 0.017 5.9E-07 47.3 10.9 100 190-372 1-110 (166)
53 1x4a_A Splicing factor, argini 96.6 0.019 6.5E-07 44.0 10.4 35 187-227 20-54 (109)
54 4f02_A Polyadenylate-binding p 96.6 0.02 7E-07 49.6 11.8 106 187-374 13-128 (213)
55 2kxn_B Transformer-2 protein h 96.6 0.012 4.2E-07 46.9 9.5 37 187-229 44-80 (129)
56 1wf1_A RNA-binding protein RAL 96.6 0.013 4.6E-07 45.0 9.4 37 313-349 62-100 (110)
57 3lqv_A PRE-mRNA branch site pr 96.6 0.015 5.2E-07 45.0 9.7 95 187-368 6-102 (115)
58 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.6 0.014 4.7E-07 46.8 9.6 36 187-228 61-96 (140)
59 2a3j_A U1 small nuclear ribonu 96.5 0.012 4.1E-07 46.9 8.8 43 313-355 72-116 (127)
60 3beg_B Splicing factor, argini 96.5 0.0087 3E-07 46.7 7.6 35 187-227 14-48 (115)
61 2cqp_A RNA-binding protein 12; 96.5 0.0061 2.1E-07 45.8 6.5 40 311-350 55-96 (98)
62 1x5o_A RNA binding motif, sing 96.4 0.025 8.7E-07 43.6 10.1 37 187-229 23-59 (114)
63 1u6f_A Tcubp1, RNA-binding pro 96.4 0.025 8.6E-07 45.4 10.4 37 187-229 40-76 (139)
64 1wg5_A Heterogeneous nuclear r 96.4 0.012 4.1E-07 44.9 8.0 36 187-228 13-49 (104)
65 2f3j_A RNA and export factor b 96.4 0.014 4.9E-07 49.3 8.9 85 187-354 86-172 (177)
66 1l3k_A Heterogeneous nuclear r 96.4 0.024 8.2E-07 48.0 10.5 105 187-373 11-128 (196)
67 2qfj_A FBP-interacting repress 96.3 0.044 1.5E-06 47.1 12.1 103 188-372 27-148 (216)
68 2jvo_A Nucleolar protein 3; nu 96.3 0.027 9.2E-07 43.3 9.5 27 187-217 29-55 (108)
69 2cpe_A RNA-binding protein EWS 96.3 0.029 9.9E-07 43.2 9.6 37 311-347 63-101 (113)
70 2kvi_A Nuclear polyadenylated 96.3 0.023 8E-07 42.4 8.8 34 187-226 8-42 (96)
71 1nu4_A U1A RNA binding domain; 96.3 0.021 7.2E-07 42.6 8.4 40 313-352 51-92 (97)
72 2xnq_A Nuclear polyadenylated 96.3 0.05 1.7E-06 40.8 10.5 35 186-226 19-54 (97)
73 2dnl_A Cytoplasmic polyadenyla 96.2 0.014 4.8E-07 45.3 7.2 31 187-223 6-36 (114)
74 2dis_A Unnamed protein product 96.2 0.037 1.3E-06 42.2 9.7 37 187-228 6-42 (109)
75 2j76_E EIF-4B, EIF4B, eukaryot 96.2 0.012 4E-07 44.5 6.6 36 187-229 17-52 (100)
76 3sde_A Paraspeckle component 1 96.1 0.043 1.5E-06 49.2 11.2 61 314-374 59-121 (261)
77 2jvr_A Nucleolar protein 3; RN 96.0 0.033 1.1E-06 43.2 8.5 28 187-218 26-53 (111)
78 2kn4_A Immunoglobulin G-bindin 96.0 0.033 1.1E-06 45.7 9.2 37 187-229 68-104 (158)
79 2cpi_A CCR4-NOT transcription 96.0 0.014 4.8E-07 45.1 6.3 37 187-229 13-52 (111)
80 1b7f_A Protein (SXL-lethal pro 96.0 0.05 1.7E-06 44.6 10.2 37 187-229 87-123 (168)
81 2i2y_A Fusion protein consists 96.0 0.062 2.1E-06 43.7 10.6 36 187-228 71-106 (150)
82 3nmr_A Cugbp ELAV-like family 95.9 0.059 2E-06 44.5 10.5 37 187-229 93-129 (175)
83 3smz_A Protein raver-1, ribonu 95.8 0.069 2.4E-06 48.2 11.1 62 313-374 57-120 (284)
84 2qfj_A FBP-interacting repress 95.7 0.072 2.5E-06 45.7 10.6 37 187-229 123-159 (216)
85 2adc_A Polypyrimidine tract-bi 95.7 0.15 5.2E-06 44.5 12.5 36 187-228 32-68 (229)
86 2g4b_A Splicing factor U2AF 65 95.6 0.018 6.2E-07 47.6 6.0 39 188-230 3-50 (172)
87 1fxl_A Paraneoplastic encephal 95.6 0.11 3.7E-06 42.4 10.7 37 187-229 86-122 (167)
88 3md3_A Nuclear and cytoplasmic 95.6 0.073 2.5E-06 43.4 9.6 37 187-229 85-121 (166)
89 2diu_A KIAA0430 protein; struc 95.4 0.025 8.7E-07 42.3 5.3 41 314-354 47-89 (96)
90 3pgw_S U1-70K; protein-RNA com 94.9 0.1 3.6E-06 50.5 9.7 36 188-229 101-136 (437)
91 1jmt_A Splicing factor U2AF 35 94.8 0.11 3.8E-06 39.5 7.7 58 290-347 33-104 (104)
92 2ghp_A U4/U6 snRNA-associated 94.7 0.14 4.9E-06 46.3 9.7 102 187-374 39-142 (292)
93 3smz_A Protein raver-1, ribonu 94.5 0.16 5.3E-06 45.8 9.3 82 187-350 182-265 (284)
94 1s79_A Lupus LA protein; RRM, 94.3 0.058 2E-06 41.0 5.1 38 187-230 9-46 (103)
95 2ywk_A Putative RNA-binding pr 94.3 0.076 2.6E-06 39.3 5.6 38 187-230 14-51 (95)
96 3s7r_A Heterogeneous nuclear r 94.2 0.076 2.6E-06 38.6 5.4 38 187-230 9-46 (87)
97 1sjr_A Polypyrimidine tract-bi 94.0 0.53 1.8E-05 39.0 10.7 35 313-347 84-122 (164)
98 3ucg_A Polyadenylate-binding p 94.0 0.084 2.9E-06 38.4 5.3 37 188-230 5-41 (89)
99 1sjq_A Polypyrimidine tract-bi 93.9 0.095 3.2E-06 40.1 5.6 39 186-230 13-51 (105)
100 2cpd_A Apobec-1 stimulating pr 93.9 0.12 4.2E-06 38.5 6.2 41 186-230 12-52 (99)
101 2dha_A FLJ20171 protein; RRM d 93.9 0.082 2.8E-06 41.7 5.3 40 187-230 21-62 (123)
102 2cq3_A RNA-binding protein 9; 93.9 0.12 4.2E-06 38.8 6.2 39 186-230 12-50 (103)
103 2cqc_A Arginine/serine-rich sp 93.9 0.12 4.1E-06 38.1 6.0 38 187-230 13-50 (95)
104 3sde_A Paraspeckle component 1 93.8 0.33 1.1E-05 43.3 9.9 36 188-229 95-130 (261)
105 2dit_A HIV TAT specific factor 93.7 0.25 8.4E-06 37.9 7.8 64 293-356 36-109 (112)
106 2div_A TRNA selenocysteine ass 93.7 0.14 4.7E-06 38.1 6.1 39 186-230 6-45 (99)
107 2cpf_A RNA binding motif prote 93.7 0.11 3.6E-06 38.7 5.4 39 187-231 3-41 (98)
108 2ytc_A PRE-mRNA-splicing facto 93.6 0.15 5E-06 36.7 6.0 38 186-229 9-46 (85)
109 3pgw_A U1-A; protein-RNA compl 93.6 0.71 2.4E-05 41.3 11.9 36 187-228 7-46 (282)
110 3d2w_A TAR DNA-binding protein 93.5 0.074 2.5E-06 39.2 4.2 38 187-230 9-46 (89)
111 2cqi_A Nucleolysin TIAR; RNA r 93.5 0.18 6.2E-06 37.8 6.5 38 187-230 13-50 (103)
112 2cqd_A RNA-binding region cont 93.3 0.15 5.2E-06 39.3 5.9 37 187-229 15-51 (116)
113 1wex_A Hypothetical protein (r 93.2 0.16 5.6E-06 38.6 5.9 38 186-229 12-49 (104)
114 2dhg_A TRNA selenocysteine ass 93.2 0.19 6.6E-06 37.7 6.2 39 187-230 7-45 (104)
115 1wf0_A TDP-43, TAR DNA-binding 93.1 0.079 2.7E-06 38.6 3.8 38 187-230 3-40 (88)
116 3ulh_A THO complex subunit 4; 93.1 0.15 5.2E-06 38.5 5.5 39 186-230 26-64 (107)
117 2xs2_A Deleted in azoospermia- 93.0 0.15 5E-06 38.3 5.3 38 187-230 7-44 (102)
118 1x4e_A RNA binding motif, sing 92.9 0.094 3.2E-06 37.9 3.9 38 187-230 3-40 (85)
119 2do0_A HnRNP M, heterogeneous 92.9 0.14 4.9E-06 39.2 5.2 38 187-230 13-50 (114)
120 2ad9_A Polypyrimidine tract-bi 92.9 0.14 4.8E-06 40.1 5.1 39 186-230 28-66 (119)
121 2dh8_A DAZ-associated protein 92.8 0.12 4.1E-06 39.0 4.6 38 187-230 14-51 (105)
122 2dng_A Eukaryotic translation 92.8 0.19 6.6E-06 37.7 5.7 38 186-230 12-49 (103)
123 2dgw_A Probable RNA-binding pr 92.6 0.22 7.4E-06 36.4 5.7 37 187-230 8-44 (91)
124 3r27_A HnRNP L, heterogeneous 92.6 0.21 7E-06 37.8 5.5 37 186-228 18-54 (100)
125 2khc_A Testis-specific RNP-typ 92.5 0.12 4.3E-06 39.9 4.4 37 187-229 38-74 (118)
126 1uaw_A Mouse-musashi-1; RNP-ty 92.5 0.1 3.5E-06 36.8 3.5 35 190-230 1-35 (77)
127 2err_A Ataxin-2-binding protei 92.4 0.17 5.9E-06 38.6 5.0 39 186-230 26-64 (109)
128 2rs2_A Musashi-1, RNA-binding 92.4 0.14 4.9E-06 39.1 4.5 38 187-230 23-60 (109)
129 2cq1_A PTB-like protein L; RRM 92.2 0.16 5.6E-06 38.4 4.5 39 186-230 12-50 (101)
130 1iqt_A AUF1, heterogeneous nuc 92.0 0.1 3.5E-06 36.6 3.0 33 191-229 1-33 (75)
131 2cq4_A RNA binding motif prote 92.0 0.16 5.6E-06 38.9 4.5 37 188-230 24-60 (114)
132 1why_A Hypothetical protein ri 91.9 0.22 7.4E-06 36.9 4.9 37 187-229 15-51 (97)
133 2cpj_A Non-POU domain-containi 91.7 0.19 6.5E-06 37.5 4.4 37 187-229 13-49 (99)
134 2dgx_A KIAA0430 protein; RRM d 91.5 0.39 1.3E-05 35.5 5.9 37 187-229 7-47 (96)
135 3s6e_A RNA-binding protein 39; 91.4 0.33 1.1E-05 37.6 5.6 45 292-336 26-78 (114)
136 2cpy_A RNA-binding protein 12; 91.1 0.14 4.9E-06 39.4 3.2 38 187-230 13-51 (114)
137 2jwn_A Embryonic polyadenylate 91.1 0.23 8E-06 38.6 4.5 37 188-230 35-71 (124)
138 1x4d_A Matrin 3; structural ge 91.0 0.16 5.5E-06 38.6 3.3 37 187-229 13-50 (102)
139 2ki2_A SS-DNA binding protein 90.9 0.12 4E-06 37.8 2.4 34 190-229 2-35 (90)
140 1x4b_A Heterogeneous nuclear r 90.9 0.26 8.8E-06 37.9 4.5 37 188-230 26-62 (116)
141 2e44_A Insulin-like growth fac 90.7 0.28 9.5E-06 36.2 4.5 37 187-229 13-50 (96)
142 2hvz_A Splicing factor, argini 90.7 0.33 1.1E-05 36.2 4.9 35 190-230 1-35 (101)
143 2mss_A Protein (musashi1); RNA 90.7 0.19 6.3E-06 35.2 3.2 33 191-229 1-33 (75)
144 1rk8_A CG8781-PA, CG8781-PA pr 90.5 0.47 1.6E-05 39.1 6.1 39 186-230 69-107 (165)
145 2dnn_A RNA-binding protein 12; 90.4 0.22 7.6E-06 38.2 3.7 36 188-230 15-50 (109)
146 3v4m_A Splicing factor U2AF 65 90.2 0.69 2.4E-05 35.1 6.4 36 312-347 58-95 (105)
147 3n9u_C Cleavage and polyadenyl 90.1 0.48 1.6E-05 38.8 5.7 39 188-230 54-92 (156)
148 2db1_A Heterogeneous nuclear r 90.1 0.26 8.9E-06 38.2 3.9 40 187-230 15-55 (118)
149 2d9o_A DNAJ (HSP40) homolog, s 90.0 0.45 1.5E-05 35.9 5.1 37 311-347 52-88 (100)
150 2krb_A Eukaryotic translation 90.0 0.31 1.1E-05 34.7 4.0 38 189-228 1-40 (81)
151 2la4_A Nuclear and cytoplasmic 90.0 0.46 1.6E-05 35.3 5.2 36 187-228 25-60 (101)
152 2cjk_A Nuclear polyadenylated 89.8 0.27 9.3E-06 40.1 4.0 37 189-231 3-39 (167)
153 2ek1_A RNA-binding protein 12; 89.7 0.15 5.1E-06 37.6 2.1 36 187-228 13-48 (95)
154 1wez_A HnRNP H', FTP-3, hetero 89.6 0.27 9.1E-06 37.1 3.5 37 187-230 13-49 (102)
155 1wg1_A KIAA1579 protein, homol 89.2 0.26 8.9E-06 35.8 3.1 39 312-350 39-79 (88)
156 2fc8_A NCL protein; structure 89.0 0.52 1.8E-05 35.1 4.8 39 311-349 52-92 (102)
157 1whx_A Hypothetical protein ri 88.7 0.39 1.3E-05 36.8 3.9 36 187-228 8-43 (111)
158 2lea_A Serine/arginine-rich sp 88.6 0.3 1E-05 38.9 3.3 37 187-229 45-81 (135)
159 2e5j_A Methenyltetrahydrofolat 88.6 0.9 3.1E-05 33.5 5.9 39 311-349 54-94 (97)
160 2hzc_A Splicing factor U2AF 65 88.6 0.88 3E-05 32.6 5.7 40 187-230 4-52 (87)
161 2hgl_A HNRPF protein, heteroge 88.3 0.36 1.2E-05 38.6 3.6 40 187-230 42-82 (136)
162 2m2b_A RNA-binding protein 10; 88.1 0.43 1.5E-05 37.6 3.9 38 187-230 21-60 (131)
163 1x4f_A Matrin 3; structural ge 88.0 0.33 1.1E-05 37.5 3.1 36 187-228 23-59 (112)
164 2voo_A Lupus LA protein; RNA-b 87.8 0.58 2E-05 39.8 4.8 36 189-230 109-144 (193)
165 2hgm_A HNRPF protein, heteroge 87.7 0.48 1.6E-05 37.4 4.0 37 187-230 40-78 (126)
166 2krb_A Eukaryotic translation 87.6 0.73 2.5E-05 32.7 4.6 25 311-335 45-69 (81)
167 2hgn_A Heterogeneous nuclear r 87.1 0.34 1.2E-05 39.0 2.8 37 187-230 44-80 (139)
168 2pe8_A Splicing factor 45; RRM 86.9 0.81 2.8E-05 34.7 4.7 37 312-348 55-93 (105)
169 2lmi_A GRSF-1, G-rich sequence 86.8 0.43 1.5E-05 36.1 3.1 40 187-230 9-49 (107)
170 2e5g_A U6 snRNA-specific termi 86.7 1.1 3.7E-05 32.8 5.3 33 187-225 6-38 (94)
171 2dhx_A Poly (ADP-ribose) polym 86.7 0.94 3.2E-05 34.2 4.7 37 188-228 7-46 (104)
172 2cpj_A Non-POU domain-containi 86.5 0.9 3.1E-05 33.6 4.7 39 312-350 50-90 (99)
173 2cqi_A Nucleolysin TIAR; RNA r 86.3 0.97 3.3E-05 33.6 4.9 38 312-349 54-93 (103)
174 2fc9_A NCL protein; structure 86.3 0.94 3.2E-05 33.6 4.8 37 311-347 51-89 (101)
175 1fj7_A Nucleolin RBD1, protein 86.2 1.4 4.6E-05 32.7 5.7 36 311-347 56-93 (101)
176 1fjc_A Nucleolin RBD2, protein 86.2 0.76 2.6E-05 33.7 4.1 37 311-347 51-89 (96)
177 1why_A Hypothetical protein ri 86.0 1.2 4.1E-05 32.7 5.2 35 313-347 53-91 (97)
178 1l3k_A Heterogeneous nuclear r 86.0 0.97 3.3E-05 37.7 5.3 38 187-230 102-139 (196)
179 2dgx_A KIAA0430 protein; RRM d 85.9 0.94 3.2E-05 33.4 4.5 35 313-347 52-88 (96)
180 3q2s_C Cleavage and polyadenyl 85.8 1.1 3.8E-05 39.1 5.6 39 188-230 67-105 (229)
181 2e44_A Insulin-like growth fac 85.7 1.7 5.9E-05 31.7 6.0 39 311-349 52-92 (96)
182 2cpx_A Hypothetical protein FL 85.6 1.4 4.7E-05 33.5 5.6 37 311-347 65-103 (115)
183 1qm9_A Polypyrimidine tract-bi 85.5 0.66 2.3E-05 39.0 4.0 38 188-231 2-40 (198)
184 1x5p_A Negative elongation fac 85.5 1.1 3.7E-05 33.0 4.7 38 311-348 47-86 (97)
185 2nlw_A Eukaryotic translation 85.3 0.86 2.9E-05 34.3 4.1 39 188-228 14-54 (105)
186 1wg1_A KIAA1579 protein, homol 85.3 0.58 2E-05 33.9 3.0 33 188-227 4-36 (88)
187 2hvz_A Splicing factor, argini 85.2 1.5 5E-05 32.5 5.4 35 312-346 36-72 (101)
188 2cqc_A Arginine/serine-rich sp 85.2 0.83 2.8E-05 33.3 3.9 26 311-336 55-80 (95)
189 2cqh_A IGF-II mRNA-binding pro 85.1 0.93 3.2E-05 33.0 4.2 36 313-348 44-82 (93)
190 2cq3_A RNA-binding protein 9; 85.0 1.5 5.1E-05 32.5 5.4 38 312-349 54-93 (103)
191 2mss_A Protein (musashi1); RNA 84.9 0.97 3.3E-05 31.3 4.0 21 311-331 39-59 (75)
192 2cpf_A RNA binding motif prote 84.9 0.97 3.3E-05 33.3 4.2 36 311-346 48-85 (98)
193 2wbr_A GW182, gawky, LD47780P; 84.5 1.7 5.7E-05 32.0 5.1 36 187-228 5-40 (89)
194 2e5j_A Methenyltetrahydrofolat 84.5 1.2 4E-05 32.8 4.5 28 187-218 17-44 (97)
195 2g4b_A Splicing factor U2AF 65 84.5 1.3 4.4E-05 36.0 5.2 38 187-230 92-129 (172)
196 2div_A TRNA selenocysteine ass 83.9 1.3 4.5E-05 32.5 4.6 25 311-335 50-74 (99)
197 2cpd_A Apobec-1 stimulating pr 83.9 1.4 4.9E-05 32.4 4.8 36 312-347 50-87 (99)
198 2ki2_A SS-DNA binding protein 83.8 0.88 3E-05 32.9 3.5 38 311-349 41-80 (90)
199 1whx_A Hypothetical protein ri 83.7 1 3.5E-05 34.3 4.0 37 312-348 45-83 (111)
200 2dhg_A TRNA selenocysteine ass 83.7 1.3 4.6E-05 32.9 4.6 36 311-346 49-87 (104)
201 3ulh_A THO complex subunit 4; 83.3 1.1 3.8E-05 33.5 4.0 37 311-347 68-106 (107)
202 2ek1_A RNA-binding protein 12; 83.3 1.2 4.1E-05 32.5 4.1 26 311-336 55-80 (95)
203 1uaw_A Mouse-musashi-1; RNP-ty 83.2 0.92 3.1E-05 31.6 3.3 24 311-334 40-63 (77)
204 1x4f_A Matrin 3; structural ge 83.0 1.6 5.6E-05 33.5 4.8 42 312-353 61-106 (112)
205 1x4e_A RNA binding motif, sing 83.0 1.1 3.7E-05 32.0 3.7 26 311-336 45-70 (85)
206 2yh0_A Splicing factor U2AF 65 82.5 1.9 6.4E-05 36.0 5.5 38 187-230 112-149 (198)
207 2bz2_A Negative elongation fac 82.3 2.3 7.8E-05 32.9 5.6 38 311-348 71-110 (121)
208 3tyt_A Heterogeneous nuclear r 82.3 1.5 5.1E-05 37.5 4.9 38 187-230 2-40 (205)
209 2ywk_A Putative RNA-binding pr 82.3 1.1 3.8E-05 32.7 3.6 26 311-336 55-80 (95)
210 2nlw_A Eukaryotic translation 82.1 1.3 4.4E-05 33.3 3.9 39 311-349 59-100 (105)
211 4f02_A Polyadenylate-binding p 81.9 1.9 6.6E-05 36.8 5.5 37 188-230 102-138 (213)
212 2dgw_A Probable RNA-binding pr 81.6 1.2 4.1E-05 32.2 3.5 35 311-346 48-84 (91)
213 1iqt_A AUF1, heterogeneous nuc 81.2 0.87 3E-05 31.6 2.5 22 311-332 39-60 (75)
214 1wez_A HnRNP H', FTP-3, hetero 81.2 0.85 2.9E-05 34.2 2.6 22 311-332 53-74 (102)
215 2j8a_A Histone-lysine N-methyl 80.9 2.2 7.5E-05 33.9 4.8 36 190-231 3-42 (136)
216 3ucg_A Polyadenylate-binding p 80.7 1.6 5.3E-05 31.3 3.8 35 311-346 46-82 (89)
217 2dng_A Eukaryotic translation 80.7 1.7 5.8E-05 32.3 4.1 37 311-348 54-92 (103)
218 1fje_B Nucleolin RBD12, protei 80.6 1.9 6.4E-05 35.2 4.8 38 310-347 133-172 (175)
219 1wex_A Hypothetical protein (r 80.1 2.7 9.2E-05 31.6 5.1 36 312-347 50-89 (104)
220 2pe8_A Splicing factor 45; RRM 79.7 3.4 0.00012 31.1 5.6 42 187-231 6-49 (105)
221 2fc8_A NCL protein; structure 79.5 1.7 5.7E-05 32.2 3.7 35 187-230 13-47 (102)
222 2cqh_A IGF-II mRNA-binding pro 79.4 2 6.9E-05 31.1 4.1 28 187-218 6-33 (93)
223 2cjk_A Nuclear polyadenylated 79.3 1.3 4.6E-05 35.7 3.4 37 188-230 86-122 (167)
224 2e5i_A Heterogeneous nuclear r 79.2 3.9 0.00013 31.9 5.9 37 314-350 62-103 (124)
225 3s7r_A Heterogeneous nuclear r 79.2 1.1 3.7E-05 32.1 2.5 22 311-332 51-72 (87)
226 2err_A Ataxin-2-binding protei 79.1 1.8 6E-05 32.8 3.8 35 312-346 68-104 (109)
227 2do0_A HnRNP M, heterogeneous 79.1 2.5 8.6E-05 31.9 4.7 25 312-336 55-79 (114)
228 3ue2_A Poly(U)-binding-splicin 79.0 1.5 5.1E-05 34.0 3.4 38 311-348 69-108 (118)
229 1wel_A RNA-binding protein 12; 79.0 0.95 3.3E-05 35.1 2.3 32 187-224 23-54 (124)
230 2dnn_A RNA-binding protein 12; 78.9 1.8 6E-05 33.0 3.7 22 311-332 54-75 (109)
231 3r27_A HnRNP L, heterogeneous 78.4 2.4 8.3E-05 31.8 4.3 35 312-346 56-94 (100)
232 1wf0_A TDP-43, TAR DNA-binding 78.4 0.75 2.6E-05 33.2 1.4 37 312-348 41-77 (88)
233 3pgw_A U1-A; protein-RNA compl 78.2 2.5 8.4E-05 37.6 5.1 36 187-228 205-240 (282)
234 2lcw_A RNA-binding protein FUS 79.6 0.43 1.5E-05 36.6 0.0 32 187-224 5-36 (116)
235 2cq2_A Hypothetical protein LO 78.1 1.6 5.4E-05 33.7 3.2 23 314-336 64-86 (114)
236 2cq1_A PTB-like protein L; RRM 78.0 1.7 6E-05 32.5 3.4 35 313-347 51-89 (101)
237 3egn_A RNA-binding protein 40; 77.5 2.4 8.2E-05 33.6 4.3 36 311-346 90-127 (143)
238 1x4d_A Matrin 3; structural ge 77.4 2.4 8.2E-05 31.9 4.0 38 313-350 52-93 (102)
239 2ad9_A Polypyrimidine tract-bi 77.1 3 0.0001 32.4 4.6 35 313-347 67-105 (119)
240 2wbr_A GW182, gawky, LD47780P; 76.6 2.3 7.9E-05 31.2 3.6 36 311-346 41-78 (89)
241 2diu_A KIAA0430 protein; struc 76.4 2.1 7.1E-05 31.9 3.3 37 188-225 7-44 (96)
242 2ytc_A PRE-mRNA-splicing facto 76.0 1.8 6.2E-05 30.7 2.9 22 312-333 47-68 (85)
243 3d2w_A TAR DNA-binding protein 76.0 1.3 4.6E-05 32.1 2.2 18 312-329 47-64 (89)
244 3tyt_A Heterogeneous nuclear r 75.9 2.7 9.1E-05 35.9 4.4 37 187-229 121-159 (205)
245 2la4_A Nuclear and cytoplasmic 75.8 2.5 8.6E-05 31.1 3.8 26 311-336 61-86 (101)
246 1qm9_A Polypyrimidine tract-bi 75.7 3.1 0.00011 34.7 4.8 37 187-229 118-155 (198)
247 2lea_A Serine/arginine-rich sp 75.6 2.6 8.7E-05 33.3 4.0 36 311-346 87-124 (135)
248 1s79_A Lupus LA protein; RRM, 75.3 1.9 6.3E-05 32.4 2.9 21 311-331 50-70 (103)
249 3ue2_A Poly(U)-binding-splicin 74.9 3.1 0.00011 32.1 4.2 43 187-232 18-62 (118)
250 2cq2_A Hypothetical protein LO 74.8 3.3 0.00011 31.8 4.3 37 187-229 23-61 (114)
251 2lmi_A GRSF-1, G-rich sequence 74.7 1.9 6.4E-05 32.4 2.8 21 311-331 53-73 (107)
252 1sjq_A Polypyrimidine tract-bi 74.5 2.5 8.5E-05 32.1 3.4 22 313-334 52-73 (105)
253 2fc9_A NCL protein; structure 74.2 2.6 8.8E-05 31.1 3.5 27 187-217 13-39 (101)
254 2hzc_A Splicing factor U2AF 65 74.1 2.1 7.3E-05 30.4 2.9 22 312-334 52-73 (87)
255 1fje_B Nucleolin RBD12, protei 73.8 5.7 0.00019 32.2 5.8 62 310-372 51-122 (175)
256 1fj7_A Nucleolin RBD1, protein 73.6 3.4 0.00012 30.4 4.0 28 187-218 15-42 (101)
257 3u1l_A PRE-mRNA-splicing facto 72.8 2.8 9.7E-05 36.8 3.9 41 187-229 132-177 (240)
258 3zzy_A Polypyrimidine tract-bi 72.6 3.9 0.00013 32.3 4.3 35 315-349 68-106 (130)
259 2khc_A Testis-specific RNP-typ 72.6 2.2 7.5E-05 32.5 2.8 25 311-335 80-104 (118)
260 2jwn_A Embryonic polyadenylate 72.6 4.2 0.00015 31.1 4.5 36 311-347 76-113 (124)
261 2e5g_A U6 snRNA-specific termi 72.2 2.6 8.9E-05 30.6 3.0 34 315-349 47-82 (94)
262 2hgl_A HNRPF protein, heteroge 72.0 2.8 9.6E-05 33.3 3.3 35 311-346 86-122 (136)
263 3n9u_C Cleavage and polyadenyl 71.9 3.5 0.00012 33.5 4.0 36 311-346 97-134 (156)
264 2adc_A Polypyrimidine tract-bi 71.4 5.1 0.00017 34.5 5.2 37 187-229 149-186 (229)
265 2yh0_A Splicing factor U2AF 65 71.4 6.2 0.00021 32.6 5.6 35 312-346 155-191 (198)
266 2cpy_A RNA-binding protein 12; 71.3 2 6.9E-05 32.7 2.2 22 311-332 55-76 (114)
267 2rs2_A Musashi-1, RNA-binding 71.0 3 0.0001 31.4 3.2 36 311-346 65-101 (109)
268 2hgm_A HNRPF protein, heteroge 70.6 2 6.7E-05 33.8 2.1 22 311-332 82-103 (126)
269 2db1_A Heterogeneous nuclear r 70.5 2 6.7E-05 33.1 2.1 21 311-331 59-79 (118)
270 1rk8_A CG8781-PA, CG8781-PA pr 70.2 4.1 0.00014 33.2 4.1 35 312-346 113-149 (165)
271 2cpx_A Hypothetical protein FL 70.1 3.9 0.00013 30.8 3.7 28 187-218 23-50 (115)
272 1fjc_A Nucleolin RBD2, protein 69.9 3.1 0.00011 30.2 3.0 27 187-217 14-40 (96)
273 2dh8_A DAZ-associated protein 69.4 2.3 8E-05 31.6 2.2 21 312-332 57-77 (105)
274 2cqd_A RNA-binding region cont 69.4 3 0.0001 31.6 2.9 36 311-346 57-93 (116)
275 1x4b_A Heterogeneous nuclear r 68.9 3 0.0001 31.6 2.8 36 311-347 67-104 (116)
276 2dha_A FLJ20171 protein; RRM d 68.6 2 6.9E-05 33.5 1.7 23 310-332 65-87 (123)
277 2ghp_A U4/U6 snRNA-associated 68.6 4.1 0.00014 36.4 4.1 37 188-230 209-246 (292)
278 2hgn_A Heterogeneous nuclear r 67.7 2 6.8E-05 34.3 1.6 21 311-331 84-104 (139)
279 3v4m_A Splicing factor U2AF 65 65.6 5.5 0.00019 29.9 3.7 43 187-231 3-51 (105)
280 2kn4_A Immunoglobulin G-bindin 65.1 13 0.00043 29.7 6.1 64 311-374 11-95 (158)
281 1wel_A RNA-binding protein 12; 65.0 2.6 8.9E-05 32.5 1.7 36 311-347 65-102 (124)
282 2cq4_A RNA binding motif prote 63.8 3.7 0.00013 30.9 2.4 23 311-334 65-87 (114)
283 2m2b_A RNA-binding protein 10; 63.7 4.1 0.00014 31.7 2.7 25 311-336 65-89 (131)
284 3u1l_A PRE-mRNA-splicing facto 63.5 9.4 0.00032 33.5 5.2 25 312-336 178-202 (240)
285 2lcw_A RNA-binding protein FUS 66.7 1.6 5.3E-05 33.3 0.0 25 311-335 55-79 (116)
286 1l8d_A DNA double-strand break 62.2 47 0.0016 24.8 8.6 32 275-306 49-86 (112)
287 2e5i_A Heterogeneous nuclear r 61.7 11 0.00037 29.3 4.8 36 188-229 22-59 (124)
288 3zzy_A Polypyrimidine tract-bi 61.4 10 0.00035 29.8 4.6 34 191-230 30-63 (130)
289 3egn_A RNA-binding protein 40; 60.6 7.2 0.00025 30.7 3.7 28 187-218 43-70 (143)
290 3q2s_C Cleavage and polyadenyl 57.4 5.9 0.0002 34.3 2.8 37 311-347 110-148 (229)
291 2xs2_A Deleted in azoospermia- 56.6 2.1 7.3E-05 31.6 -0.2 20 312-331 49-68 (102)
292 2voo_A Lupus LA protein; RNA-b 56.3 7.1 0.00024 32.8 3.1 23 311-333 148-170 (193)
293 3dxb_A Thioredoxin N-terminall 55.5 11 0.00039 32.0 4.3 38 311-348 173-212 (222)
294 3he5_A Synzip1; heterodimeric 54.7 33 0.0011 20.7 5.2 20 282-301 29-48 (49)
295 1x5p_A Negative elongation fac 50.9 21 0.00072 25.7 4.6 34 187-228 13-46 (97)
296 3tht_A Alkylated DNA repair pr 49.9 11 0.00038 35.0 3.5 22 314-335 57-78 (345)
297 1owx_A Lupus LA protein, SS-B, 49.8 14 0.00048 28.6 3.5 40 187-231 16-55 (121)
298 2dnr_A Synaptojanin-1; RRM dom 43.6 9.4 0.00032 28.0 1.5 32 314-346 50-83 (91)
299 1wey_A Calcipressin 1; structu 42.2 36 0.0012 25.5 4.6 45 189-233 5-57 (104)
300 2dhx_A Poly (ADP-ribose) polym 41.0 29 0.00098 26.0 3.8 44 314-357 48-94 (104)
301 1ufw_A Synaptojanin 2; RNP dom 39.8 17 0.00059 26.8 2.4 19 313-331 58-76 (95)
302 1pfi_A Major coat protein of P 39.5 42 0.0014 20.4 3.6 26 4-29 20-45 (46)
303 1go4_E MAD1 (mitotic arrest de 38.5 1.2E+02 0.0041 22.5 6.9 71 232-307 19-91 (100)
304 1whv_A Poly(A)-specific ribonu 36.8 41 0.0014 24.9 4.1 22 313-334 49-70 (100)
305 2l2t_A Receptor tyrosine-prote 35.3 65 0.0022 20.0 4.2 15 17-31 24-38 (44)
306 2bz2_A Negative elongation fac 31.9 44 0.0015 25.3 3.9 34 187-228 37-70 (121)
307 2ks1_B Epidermal growth factor 31.5 36 0.0012 21.2 2.6 15 17-31 25-39 (44)
308 2d9o_A DNAJ (HSP40) homolog, s 29.8 1.5E+02 0.0051 21.6 6.4 41 187-229 8-51 (100)
309 2jwa_A Receptor tyrosine-prote 28.8 63 0.0021 20.1 3.3 15 16-30 24-38 (44)
310 2dnr_A Synaptojanin-1; RRM dom 28.6 73 0.0025 23.2 4.3 44 186-231 4-51 (91)
311 2ldf_A Sarafotoxin-M, SRTX-M; 23.9 22 0.00074 19.2 0.5 6 351-356 18-23 (26)
312 2lf0_A Uncharacterized protein 22.8 1.8E+02 0.0061 22.1 5.5 23 284-306 36-58 (123)
313 3ra3_A P1C; coiled coil domain 22.6 97 0.0033 16.4 3.1 6 283-288 2-7 (28)
314 1edn_A Endothelin-1; signal po 21.4 21 0.00073 19.2 0.1 8 350-357 17-24 (26)
315 2lde_A Sarafotoxin-I3; endothe 21.2 23 0.00078 19.2 0.2 7 350-356 17-23 (26)
316 2k1k_A Ephrin type-A receptor 21.1 1.3E+02 0.0044 17.9 3.6 14 17-30 25-38 (38)
317 1srb_A Sarafotoxins precursor; 20.3 24 0.00081 19.1 0.2 6 351-356 18-23 (26)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.002 Score=48.19 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=60.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.++.+.+|-.
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD---------------------------------- 42 (95)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC----------------------------------
Confidence 4579999999999875 78899999886 4687877664210
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~ 344 (379)
..+..+.|||+|.+..+|..|.+.+.... ...+.|.
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 43 ------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp ------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 01345789999999999999998765442 2346677
Q ss_pred eCCCCC
Q 016993 345 DAPESR 350 (379)
Q Consensus 345 ~AP~P~ 350 (379)
.|.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 775544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.42 E-value=0.0012 Score=50.27 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
....+|.|.|||.+++ ++.|+++|+++ |.|.++.+.+
T Consensus 17 ~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~ 53 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIR 53 (99)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeee
Confidence 3457899999999886 89999999986 5788888775
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.35 E-value=0.0015 Score=50.75 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|-.
T Consensus 4 ~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~---------------------------------- 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPR---------------------------------- 43 (110)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCC----------------------------------
Confidence 5679999999999875 89999999876 6788888876310
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~ 344 (379)
+.++.|.|||+|.+..+|+.|.+.+.... -..+.|.
T Consensus 44 ------------------------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 44 ------------------------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 12356899999999999999998776542 2345577
Q ss_pred eCCC
Q 016993 345 DAPE 348 (379)
Q Consensus 345 ~AP~ 348 (379)
.|+.
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 7763
No 4
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.31 E-value=0.0014 Score=48.30 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=29.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 2 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 38 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMPV 38 (88)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEe
Confidence 3568999999999886 78999999876 5677766553
No 5
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.29 E-value=0.003 Score=48.81 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=62.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~ 265 (379)
.+..++|.|.|||.++. ++.|+++|+++ |.|.++.+.+|-.
T Consensus 23 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSE--------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCC---------------------------------
Confidence 35679999999999875 78999999876 5688877764210
Q ss_pred CCCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEE
Q 016993 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (379)
Q Consensus 266 ~~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v 343 (379)
...+.|.|||+|.+..+|..|.+.+.... ...+.|
T Consensus 64 -------------------------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 64 -------------------------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp -------------------------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 01346799999999999999998766542 235667
Q ss_pred eeCCCCCC
Q 016993 344 SDAPESRE 351 (379)
Q Consensus 344 ~~AP~P~D 351 (379)
..|-+..|
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 77766554
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.27 E-value=0.0035 Score=51.65 Aligned_cols=105 Identities=21% Similarity=0.239 Sum_probs=76.0
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (379)
+++||.|.|||.++. ++.|+++|+++ |.|.++.+.+|-.
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~~----------------------------------- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKI----------------------------------- 39 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC-----------------------------------
Confidence 468999999999875 89999999986 4677777664210
Q ss_pred CCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEee
Q 016993 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (379)
Q Consensus 268 rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~ 345 (379)
+.++.|.|||+|.+..+|..|.+.+.... ...+.+..
T Consensus 40 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 40 -----------------------------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 11346799999999999999998765432 22344555
Q ss_pred CCCC------CCeeeCCCCCChhHHHHHHHHHHhh
Q 016993 346 APES------RELIWNNLNIKFFQRQIRHGWNIVQ 374 (379)
Q Consensus 346 AP~P------~DI~W~Nl~~~~~~r~~r~~~~~~~ 374 (379)
+..+ ..|.-.||.....+.-++.++.-..
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 113 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 113 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcC
Confidence 5433 3488889988888888888776543
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.23 E-value=0.00076 Score=50.48 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=25.6
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEE
Q 016993 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (379)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (379)
+.+|+|.|||.+.+ ++.|+++|++..+ .|.+|.
T Consensus 1 S~~i~v~nLp~~~t----e~~l~~~F~~~G~-~v~~v~ 33 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT----EDDIRGQLQSHGV-QAREVR 33 (91)
T ss_dssp CCEEEEETCCSSCC----HHHHHHHHHHHTC-CCSBCC
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHhCC-EeEEEE
Confidence 47999999999886 8999999998742 344443
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.19 E-value=0.0046 Score=46.91 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 10 ~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVK 46 (102)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5679999999999876 78999999987 4577777654
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.19 E-value=0.0011 Score=50.15 Aligned_cols=38 Identities=3% Similarity=0.057 Sum_probs=29.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
....||+|.|||.+.+ ++.|+++|+++.+-.+.+|.++
T Consensus 7 ~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~i~ 44 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIRLI 44 (95)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEECC
T ss_pred CccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEEEE
Confidence 5678999999999886 8999999988754345555544
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.17 E-value=0.0026 Score=46.43 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEEE
Confidence 5679999999999875 89999999987 4677776543
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.15 E-value=0.0043 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.5
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
+||.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~ 35 (83)
T 3md1_A 2 FNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMW 35 (83)
T ss_dssp EEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEE
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 7899999999875 79999999876 5688877765
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.13 E-value=0.0018 Score=48.12 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=53.9
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016993 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (379)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~rp 269 (379)
+||.|.|||.+.. ++.|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 6899999999875 79999999987433677777664210
Q ss_pred ccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016993 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (379)
Q Consensus 270 ~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~AP 347 (379)
+.+..|.|||+|.+..+|..|.+.+....- ..+.|..|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 113467999999999999999987765432 345566664
Q ss_pred CCC
Q 016993 348 ESR 350 (379)
Q Consensus 348 ~P~ 350 (379)
.|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.0042 Score=46.82 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 41 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYP 41 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEE
Confidence 5679999999999876 78999999977 467776654
No 14
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.13 E-value=0.0064 Score=46.41 Aligned_cols=36 Identities=11% Similarity=0.366 Sum_probs=29.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.
T Consensus 11 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 46 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVL 46 (106)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEE
Confidence 5679999999999876 78999999987 457776654
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.0072 Score=45.52 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 8 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp SSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5679999999999876 78999999886 5687777654
No 16
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.09 E-value=0.004 Score=46.70 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.9
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
+++|.|.|||.+.. ++.|+++|+++ |.|.++.+.
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 35 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMM 35 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECC
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 58999999999876 78999999987 467776654
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0064 Score=45.92 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 15 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (100)
T 2do4_A 15 LEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVT 51 (100)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEE
Confidence 5679999999999876 78999999986 5687877664
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.08 E-value=0.0035 Score=45.93 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 4 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4578999999999875 89999999987 5688877764
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.07 E-value=0.0065 Score=50.47 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=77.1
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (379)
.++||.|.|||.+.. ++.|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~---------------------------------- 41 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRSQ---------------------------------- 41 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECSS----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCCC----------------------------------
Confidence 368999999999875 89999999987 56888887753110
Q ss_pred CCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC-----CCCeE
Q 016993 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 342 (379)
Q Consensus 268 rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~-----~~~~~ 342 (379)
| ..+..|.|||+|.+..+|..|.+.+.... ...+.
T Consensus 42 ------------~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 42 ------------N----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp ------------S----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ------------C----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 1 12457899999999999999998765432 12233
Q ss_pred EeeCC-------CCCCeeeCCCCCChhHHHHHHHHHHhh
Q 016993 343 VSDAP-------ESRELIWNNLNIKFFQRQIRHGWNIVQ 374 (379)
Q Consensus 343 v~~AP-------~P~DI~W~Nl~~~~~~r~~r~~~~~~~ 374 (379)
+..+. ....|.=.||.....+.-++.++.-..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 120 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFG 120 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCC
Confidence 33332 345588889988888888888776543
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.06 E-value=0.0089 Score=45.50 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5679999999999886 78999999977 4588877664
No 21
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.03 E-value=0.0085 Score=45.74 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
....++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPK 49 (107)
T ss_dssp SSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCC
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEec
Confidence 35679999999999876 78999999986 4677766543
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.03 E-value=0.0069 Score=46.13 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=30.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPK 49 (105)
T ss_dssp CTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5679999999999876 78999999987 5677766543
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.02 E-value=0.007 Score=47.03 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 23 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5568999999999876 79999999987 5677877764
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.01 E-value=0.0055 Score=47.81 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=29.5
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
.+.+|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 4 ~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 456899999999875 89999999987 5688887764
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.005 Score=45.88 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
.+..++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 36679999999999876 78899999876 4577777654
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.004 Score=46.62 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=26.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~ 35 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEID----EKLLYDTFSAF--GVILQT 35 (96)
T ss_dssp SCCCEEEEECCCTTCC----HHHHHHHHHTT--SCBSSC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEE
Confidence 4579999999999875 89999999986 345554
No 27
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.98 E-value=0.0089 Score=44.26 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=29.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~~ 42 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIKM 42 (92)
T ss_dssp SSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 5679999999999875 79999999986 5677766553
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.97 E-value=0.008 Score=46.98 Aligned_cols=37 Identities=5% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 41 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLIK 41 (116)
T ss_dssp CSCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 4568999999999875 79999999987 4577777664
No 29
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.95 E-value=0.0076 Score=49.73 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=74.0
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (379)
+.+||.|.|||.+.. ++.|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 40 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeCC-----------------------------------
Confidence 468999999999875 78899999986 4577766543110
Q ss_pred CCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEee
Q 016993 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (379)
Q Consensus 268 rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~ 345 (379)
+..+.|.|||+|.+..+|..|.+.+.... ...+.+..
T Consensus 41 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 41 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 11345799999999999999998665432 22334544
Q ss_pred CC------CCCCeeeCCCCCChhHHHHHHHHHHh
Q 016993 346 AP------ESRELIWNNLNIKFFQRQIRHGWNIV 373 (379)
Q Consensus 346 AP------~P~DI~W~Nl~~~~~~r~~r~~~~~~ 373 (379)
|. .+.-|.-.||.....+.-++.++.-.
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 113 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKY 113 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSS
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcC
Confidence 43 34568889998888888888776543
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.0086 Score=45.45 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMM 49 (103)
T ss_dssp SSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 5679999999999876 78899999876 4577777664
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.93 E-value=0.011 Score=45.14 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 21 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 57 (106)
T 1p27_B 21 VEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 57 (106)
T ss_dssp TTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEe
Confidence 4568999999999876 78999999987 5688887764
No 32
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.92 E-value=0.01 Score=43.78 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=28.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~ 41 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDV 41 (90)
T ss_dssp CCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEE
Confidence 5679999999999875 79999999987 44666554
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.90 E-value=0.0094 Score=46.24 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+||.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVK 49 (115)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5679999999999876 78999999987 5688887765
No 34
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.89 E-value=0.011 Score=43.91 Aligned_cols=36 Identities=6% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEE
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (379)
....++|.|.|||.++. ++.|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~~ 42 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECDI 42 (92)
T ss_dssp CCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 35679999999999875 89999999986 45666554
No 35
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.013 Score=43.16 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 40 (90)
T 2dnq_A 6 SGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECDI 40 (90)
T ss_dssp SCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEEE
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEE
Confidence 5679999999999875 78899999876 44555443
No 36
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.006 Score=46.94 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~i~ 48 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADVY 48 (108)
T ss_dssp SCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEe
Confidence 4578999999998875 89999999987 456665543
No 37
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.0069 Score=46.02 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999876 78999999987 5688887765
No 38
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.81 E-value=0.0083 Score=49.42 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=30.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 37 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 73 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGL 73 (156)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4579999999999875 79999999987 4688887765
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.0092 Score=45.27 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=29.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.
T Consensus 11 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 46 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIP 46 (103)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 4579999999999875 79999999876 567776654
No 40
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.01 Score=45.61 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=29.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999875 79999999876 4677776543
No 41
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.0098 Score=45.13 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+||.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 6 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~ 42 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVY 42 (104)
T ss_dssp HHHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEE
T ss_pred CCccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEe
Confidence 3568999999999876 78999999986 4677777664
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=0.01 Score=45.20 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=30.0
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
....+||.|.|||.++. ++.|+++|+++ | |.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp SSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 35679999999999875 79999999876 5 87777653
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=0.0072 Score=45.91 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp SSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 5679999999999875 78899999876 5688877764
No 44
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.75 E-value=0.015 Score=44.11 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.
T Consensus 9 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 4568999999999875 79999999987 4465554
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.73 E-value=0.012 Score=45.24 Aligned_cols=37 Identities=5% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
....++|.|.|||.++. ++.|+++|+++ |.|.++.+.
T Consensus 23 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 59 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLN 59 (110)
T ss_dssp BTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35678999999999875 78899999987 567776654
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.73 E-value=0.0059 Score=46.28 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.
T Consensus 10 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 45 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 45 (102)
T ss_dssp CCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEEE
Confidence 5679999999999875 79999999876 456665543
No 47
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.70 E-value=0.017 Score=44.36 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.+|.+.
T Consensus 23 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 58 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVF 58 (109)
T ss_dssp SSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 5679999999999875 89999999987 457666554
No 48
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.70 E-value=0.013 Score=46.21 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.2
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
....++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 19 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35678999999999875 89999999976 4677776553
No 49
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.69 E-value=0.013 Score=46.16 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 33 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 4568999999999875 78899999986 5677777654
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.65 E-value=0.0049 Score=46.77 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=28.1
Q ss_pred CcceEEEecCCC------CCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 188 QQFAVLVRDLPD------LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 188 ~~~TVlV~~IP~------~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
.++||.|.|||. +.. ++.|+++|+++ |.|.+|.+++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~----~~~L~~~F~~~--G~i~~v~i~~ 46 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVL----KKALTSLFSKA--GKVVNMEFPI 46 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHH----HHHHHHHHHTT--SCEEEEECCE
T ss_pred cCcEEEEeCCCcCChHHHHHH----HHHHHHHHHhc--CCEeEEEEEE
Confidence 368999999997 543 78899999876 5677777664
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.64 E-value=0.018 Score=43.28 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=26.8
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceE
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~ 224 (379)
.+..++|.|.|||.+.. ++.|+++|++. |.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 36679999999999876 89999999876 44555
No 52
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.017 Score=47.29 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=68.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016993 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (379)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~rp 269 (379)
|||.|.|||.+.. ++.|+++|+++ |.|.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~-------------------------------------- 36 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIMIDK-------------------------------------- 36 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEECCC--------------------------------------
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEEECC--------------------------------------
Confidence 6899999999876 79999999987 468887776310
Q ss_pred ccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016993 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (379)
Q Consensus 270 ~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~AP 347 (379)
+.+..|.|||+|.+..+|..|.+.+..... ..+.+..|.
T Consensus 37 ---------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 37 ---------------------------------------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp ---------------------------------------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------------------------------------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 012356899999999999999976654321 223344332
Q ss_pred C--------CCCeeeCCCCCChhHHHHHHHHHH
Q 016993 348 E--------SRELIWNNLNIKFFQRQIRHGWNI 372 (379)
Q Consensus 348 ~--------P~DI~W~Nl~~~~~~r~~r~~~~~ 372 (379)
. +..|.=.||.....+.-++.++.-
T Consensus 78 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 110 (166)
T 3md3_A 78 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKD 110 (166)
T ss_dssp CCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTT
T ss_pred CCCCCCCCCCceEEECCCCCCCCHHHHHHHHhc
Confidence 2 223666788777777777766643
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.63 E-value=0.019 Score=44.02 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 4568999999999875 89999999987 45666554
No 54
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.63 E-value=0.02 Score=49.62 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=75.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
...+||.|.|||.++. ++.|+++|+++ |.|.+|.+.+|-.
T Consensus 13 ~p~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 52 (213)
T 4f02_A 13 YPMASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI---------------------------------- 52 (213)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC----------------------------------
Confidence 3468999999999886 89999999987 5788888765310
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~ 344 (379)
..+..|.|||+|.+..+|..|.+.+..... ..+.+.
T Consensus 53 ------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 53 ------------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 113467999999999999999987654321 122344
Q ss_pred eCCC--------CCCeeeCCCCCChhHHHHHHHHHHhh
Q 016993 345 DAPE--------SRELIWNNLNIKFFQRQIRHGWNIVQ 374 (379)
Q Consensus 345 ~AP~--------P~DI~W~Nl~~~~~~r~~r~~~~~~~ 374 (379)
.+.. ...|.=.||.....+.-++.++.-..
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 128 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 128 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred cccccccccccccccceECCcccccHHHHHHHHHhhcC
Confidence 3332 23578888888888888888776543
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.61 E-value=0.012 Score=46.89 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 44 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~ 80 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 80 (129)
T ss_dssp CCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5578999999999876 78999999876 5688877764
No 56
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.61 E-value=0.013 Score=45.01 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=26.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 349 (379)
.+.|||+|.+..+|..|.+.+.... ...+.|..|-.|
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4789999999999999998765432 234556666433
No 57
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.60 E-value=0.015 Score=45.04 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
...+||.|.|||.++. ++.|+++|+.+ |.|.++.+.+|
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~------------------------------------ 43 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNT------------------------------------ 43 (115)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECS------------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC------------------------------------
Confidence 4578999999999875 78899999976 56777766521
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~ 344 (379)
....|.|||+|.+..+|..|.+.+.... ...+.|.
T Consensus 44 -------------------------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 44 -------------------------------------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp -------------------------------------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred -------------------------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 0114689999999999999999776543 2345677
Q ss_pred eCCCCCCeeeCCCCCChhHHHHHH
Q 016993 345 DAPESRELIWNNLNIKFFQRQIRH 368 (379)
Q Consensus 345 ~AP~P~DI~W~Nl~~~~~~r~~r~ 368 (379)
.|-.+..- +|+.....+.-++.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EecCChhh--hhhhHhHhHHHHHH
Confidence 66543322 45544444444443
No 58
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.56 E-value=0.014 Score=46.85 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.
T Consensus 61 ~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~ 96 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 96 (140)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECC
T ss_pred CCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 5679999999999875 79999999987 467776654
No 59
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.53 E-value=0.012 Score=46.91 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=32.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCCCeeeC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 355 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DI~W~ 355 (379)
.|.|||+|.+..+|..|.+.+.... ...+.|..|-.+++...+
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 4679999999999999998765543 235678888877776654
No 60
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.47 E-value=0.0087 Score=46.68 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+
T Consensus 14 r~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 48 (115)
T 3beg_B 14 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 48 (115)
T ss_dssp ---CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 3568999999998876 68899999876 45666543
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.47 E-value=0.0061 Score=45.82 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=29.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~ 350 (379)
++.+.|||+|.+..+|..|.+.+... ....+.|+.|-.|.
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 34689999999999999999876543 22345677776553
No 62
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.44 E-value=0.025 Score=43.64 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 4568999999999875 78899999876 4687877665
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.43 E-value=0.025 Score=45.37 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=30.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 40 ~~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4468999999999886 78999999987 5688887764
No 64
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.012 Score=44.85 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceE-EEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR-SMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~-v~i~ 228 (379)
...++|.|.|||.+.+ ++.|+++|+++ |.|.+ |.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~~v~i~ 49 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPNGMTLP 49 (104)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcceeEEEE
Confidence 4679999999999876 79999999876 44544 4433
No 65
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.38 E-value=0.014 Score=49.28 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
....+|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|-
T Consensus 86 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~----------------------------------- 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDR----------------------------------- 124 (177)
T ss_dssp TTCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 4568999999999876 78999999986 467777665421
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~ 344 (379)
..+..|.|||+|.+..+|..|.+.+.... ...+.|+
T Consensus 125 ------------------------------------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 125 ------------------------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp ------------------------------------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred ------------------------------------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 01235789999999999999998765432 2345677
Q ss_pred eCCCCCCeee
Q 016993 345 DAPESRELIW 354 (379)
Q Consensus 345 ~AP~P~DI~W 354 (379)
.|..+....|
T Consensus 163 ~a~~~~~~~~ 172 (177)
T 2f3j_A 163 LVASQIDLEH 172 (177)
T ss_dssp EESSGGGGCC
T ss_pred EecCCCCCCC
Confidence 7765444433
No 66
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.37 E-value=0.024 Score=47.98 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=72.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|..
T Consensus 11 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 50 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRDPN---------------------------------- 50 (196)
T ss_dssp GGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEcCC----------------------------------
Confidence 5679999999999875 89999999987 5688887765310
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcC-CCCCeEEee
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ-LVDTWTVSD 345 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~-~~~~~~v~~ 345 (379)
.....|.|||+|.+..+|..|.+..... ....+.+..
T Consensus 51 ------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 51 ------------------------------------------TKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred ------------------------------------------CCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 1134579999999999999999762111 111222333
Q ss_pred CC------------CCCCeeeCCCCCChhHHHHHHHHHHh
Q 016993 346 AP------------ESRELIWNNLNIKFFQRQIRHGWNIV 373 (379)
Q Consensus 346 AP------------~P~DI~W~Nl~~~~~~r~~r~~~~~~ 373 (379)
|. .+..|.=.||.....+.-++.++.-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~ 128 (196)
T 1l3k_A 89 AVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128 (196)
T ss_dssp CCC-----------CCSEEEEECCTTTCCHHHHHHHHTTT
T ss_pred ccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcC
Confidence 32 22557788888887787787776543
No 67
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.33 E-value=0.044 Score=47.13 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=73.5
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (379)
..+||.|.|||.++. ++.|+++|+++ |.|.+|.+.+|..
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 65 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSWDSV----------------------------------- 65 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECCC-C-----------------------------------
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEeecCC-----------------------------------
Confidence 468999999999875 89999999987 5687777654210
Q ss_pred CCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEee
Q 016993 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSD 345 (379)
Q Consensus 268 rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~ 345 (379)
+.+..|.|||+|.+..+|..|.+.+....- ..+.+..
T Consensus 66 -----------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 66 -----------------------------------------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp -----------------------------------------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred -----------------------------------------CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 013567999999999999999987654322 2334443
Q ss_pred CC-----------------CCCCeeeCCCCCChhHHHHHHHHHH
Q 016993 346 AP-----------------ESRELIWNNLNIKFFQRQIRHGWNI 372 (379)
Q Consensus 346 AP-----------------~P~DI~W~Nl~~~~~~r~~r~~~~~ 372 (379)
+. ...-|.-.||.....+.-++.++.-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc
Confidence 32 2356888888888777777777654
No 68
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.32 E-value=0.027 Score=43.29 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (379)
...++|.|.|||.+.. ++.|+++|+++
T Consensus 29 ~~~~~l~V~nLp~~~t----~~~L~~~F~~~ 55 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQ----ESELNEIFGPF 55 (108)
T ss_dssp CSCSEEEECSSCTTCC----HHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc
Confidence 5679999999999875 78899999876
No 69
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.029 Score=43.21 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=26.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
+..|.|||+|.+..+|..|.+.+.... -..+.|..|-
T Consensus 63 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 63 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 457899999999999999998765432 2234565553
No 70
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.023 Score=42.44 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCcceEEE
Q 016993 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (379)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (379)
+..++|.|.|||. ++. ++.|+++|+++ |.|.++.
T Consensus 8 ~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~ 42 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQIN 42 (96)
T ss_dssp -CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEE
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEE
Confidence 5679999999997 765 78999999876 4454443
No 71
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.25 E-value=0.021 Score=42.62 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=29.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCCCe
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESREL 352 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DI 352 (379)
.|.|||+|.+..+|..|.+.+.... ...+.+..|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 4689999999999999998766542 234567777655553
No 72
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.25 E-value=0.05 Score=40.80 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCcceEEE
Q 016993 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (379)
Q Consensus 186 ~~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~ 226 (379)
.+..++|.|.|||. +.. ++.|+++|+++ |.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~ 54 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQIN 54 (97)
T ss_dssp CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEE
Confidence 36689999999996 775 78999999876 4455544
No 73
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.014 Score=45.33 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcce
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 223 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~ 223 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.
T Consensus 6 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID----EDEITASFRRF--GPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE
Confidence 4579999999999876 79999999876 4454
No 74
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.18 E-value=0.037 Score=42.23 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.+.. ++.|+++|+++.+ .|.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~G~-~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK----REEILEEIAKVTE-GVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCCTTSC----HHHHHHHHHHHST-TEEEEECC
T ss_pred cCCCEEEEeCCCCcCC----HHHHHHHHHHhcC-CceEEEEE
Confidence 4579999999999875 7999999998842 26666543
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.18 E-value=0.012 Score=44.53 Aligned_cols=36 Identities=11% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+||.|.|||.+.. ++.|+++|+++ | |.+|.+.+
T Consensus 17 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 52 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 52 (100)
T ss_dssp ---CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEe
Confidence 5679999999999876 68899999876 5 87777653
No 76
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.11 E-value=0.043 Score=49.15 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=49.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCCCeeeCCCCCChhHHHHHHHHHHhh
Q 016993 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWNNLNIKFFQRQIRHGWNIVQ 374 (379)
Q Consensus 314 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~DI~W~Nl~~~~~~r~~r~~~~~~~ 374 (379)
|.|||+|.+..+|..|.+.+.... ...+.+..|....-|.=.||.....+.-++.++.-..
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G 121 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFG 121 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcC
Confidence 699999999999999998665442 3346688888888899999998888888888876544
No 77
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.01 E-value=0.033 Score=43.18 Aligned_cols=28 Identities=7% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (379)
+..++|.|.|||.+.+ ++.|+++|++..
T Consensus 26 ~~~~~l~VgnLp~~~t----e~dL~~~F~~~G 53 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCS----WQDLKDLARENS 53 (111)
T ss_dssp CCCEEEEEECSSCCCC----HHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHhC
Confidence 4578999999999876 799999999873
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.00 E-value=0.033 Score=45.68 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=29.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 68 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~~ 104 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 104 (158)
T ss_dssp CBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 4568999999999875 79999999887 4677776553
No 79
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.98 E-value=0.014 Score=45.08 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHH---HHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~---~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+ ++|+++ |.|.++.+..
T Consensus 13 ~~~~~l~V~nLp~~~~----~~~l~~~~~~F~~~--G~i~~v~i~~ 52 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLA----DPEVLKRPEYFGKF--GKIHKVVINN 52 (111)
T ss_dssp CCSSCEEEEEECTTTC----CHHHHHSTTTTTTT--SCEEEEEEEC
T ss_pred cCCCEEEEECCCCCCC----HHHHHHHHHHhhcc--CCEEEEEEec
Confidence 5678999999999887 57787 888876 5688887764
No 80
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.98 E-value=0.05 Score=44.62 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 87 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 123 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILR 123 (168)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEE
T ss_pred CCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEE
Confidence 4578999999999875 79999999876 4677777664
No 81
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.96 E-value=0.062 Score=43.70 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.
T Consensus 71 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 106 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWVA 106 (150)
T ss_dssp TTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEe
Confidence 5679999999999886 68899999987 467766554
No 82
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.92 E-value=0.059 Score=44.48 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 93 ~~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 4678999999999875 78999999987 4588877764
No 83
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.77 E-value=0.069 Score=48.21 Aligned_cols=62 Identities=21% Similarity=0.148 Sum_probs=49.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCCCCCeeeCCCCCChhHHHHHHHHHHhh
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRHGWNIVQ 374 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~DI~W~Nl~~~~~~r~~r~~~~~~~ 374 (379)
.|.|||+|.+..+|..|.+.+... ....+.+..+|...-|.=.||.....+.-++.++.-..
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcC
Confidence 368999999999999999876543 23345688888888899999998888888888776543
No 84
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.73 E-value=0.072 Score=45.71 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 123 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 159 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLAR 159 (216)
T ss_dssp TTSCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEE
T ss_pred CCCcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEe
Confidence 3468999999999875 89999999876 5788888765
No 85
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.65 E-value=0.15 Score=44.50 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
+..+||+|.|||. +.. ++.|+++|+++ |.|.+|.+.
T Consensus 32 ~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEE
Confidence 5679999999998 665 89999999987 457776654
No 86
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.62 E-value=0.018 Score=47.64 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=30.2
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhh----C----CC-cceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----PD-TFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~----~----p~-~v~~v~i~~d 230 (379)
.+++|.|.|||.+.. ++.|+++|++. . |+ .|.++.+.++
T Consensus 3 ~~~~l~V~nLp~~~t----~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~ 50 (172)
T 2g4b_A 3 SARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 50 (172)
T ss_dssp GGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT
T ss_pred cccEEEEcCCCcccC----HHHHHHHHHHHhhhcccccCCCCceeeeEecCC
Confidence 368999999999876 89999999987 2 11 6777776544
No 87
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.59 E-value=0.11 Score=42.38 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4568999999999875 78999999987 5677777664
No 88
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.073 Score=43.40 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 85 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 121 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMW 121 (166)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEE
T ss_pred CCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEe
Confidence 4578999999999875 79999999876 5677877664
No 89
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.36 E-value=0.025 Score=42.35 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=35.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCCCeee
Q 016993 314 GAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESRELIW 354 (379)
Q Consensus 314 ~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~AP~P~DI~W 354 (379)
|.|||+|.++.+|..|.+.+....- ..+.+..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 9999999999999999988776543 4688999999999863
No 90
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.91 E-value=0.1 Score=50.53 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=29.3
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...||+|.|||..+. ++.|.++|+++ |.|.+|.++.
T Consensus 101 ~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~ 136 (437)
T 3pgw_S 101 AFKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVY 136 (437)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeec
Confidence 357999999999875 78999999986 5677777654
No 91
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=94.77 E-value=0.11 Score=39.51 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHhHHHHHHH-HHhhc-----------ccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 290 NEKIKEIIPKLEAEQ-KITLK-----------EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 290 ~~~l~~l~~~i~~~~-~~~~~-----------~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
++..+.+.+++.++- ++.++ .++.|.|||+|.+..+|..|.+.+.... .....+..+|
T Consensus 33 ~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 33 QEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 344455666666665 55431 2357999999999999999998876542 2234466665
No 92
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.75 E-value=0.14 Score=46.29 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=72.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
...+||.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|.
T Consensus 39 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSL----------------------------------- 77 (292)
T ss_dssp ---CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 5679999999999886 79999999987 567777765310
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~ 344 (379)
....|.|||+|.+..+|..|.+ +... ....+.+.
T Consensus 78 -------------------------------------------~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 78 -------------------------------------------KKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------------------------------------------TSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred -------------------------------------------CCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 0124799999999999999996 3222 12234466
Q ss_pred eCCCCCCeeeCCCCCChhHHHHHHHHHHhh
Q 016993 345 DAPESRELIWNNLNIKFFQRQIRHGWNIVQ 374 (379)
Q Consensus 345 ~AP~P~DI~W~Nl~~~~~~r~~r~~~~~~~ 374 (379)
.++ +.-|.=.||.....+.-++.++....
T Consensus 114 ~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 114 HLT-ECTLWMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp ECC-SCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred ECC-CCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 664 56788889988888888887776544
No 93
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.47 E-value=0.16 Score=45.81 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=60.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (379)
...++|.|.|||.++.+ ++.|+++|+.+ |.|.++.+.+|-
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 45689999999998756 89999999876 567777766421
Q ss_pred CCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHhhcccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016993 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (379)
Q Consensus 267 ~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~ 344 (379)
+.++.|.|||+|.+..+|..|.+.+....- ..+.+.
T Consensus 222 ------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 222 ------------------------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp ------------------------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 012458999999999999999997765432 245577
Q ss_pred eCCCCC
Q 016993 345 DAPESR 350 (379)
Q Consensus 345 ~AP~P~ 350 (379)
.|....
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 775433
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.34 E-value=0.058 Score=41.05 Aligned_cols=38 Identities=5% Similarity=0.190 Sum_probs=32.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|
T Consensus 9 ~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~~d 46 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRRT 46 (103)
T ss_dssp SGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEECC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEEEC
Confidence 5679999999999876 89999999986 57999998864
No 95
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.28 E-value=0.076 Score=39.25 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=32.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 14 ~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~~ 51 (95)
T 2ywk_A 14 EADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICKD 51 (95)
T ss_dssp TGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 5679999999999875 79999999987 57889988864
No 96
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.22 E-value=0.076 Score=38.57 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=32.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 9 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp SCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeec
Confidence 5679999999999885 89999999876 67999988864
No 97
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.00 E-value=0.53 Score=38.96 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=27.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC----CCeEEeeCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAP 347 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~AP 347 (379)
.+.|||+|.+..+|..|.+.+....- ..+.|+.|=
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 36899999999999999998766543 356677664
No 98
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=93.98 E-value=0.084 Score=38.42 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=31.6
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..+||.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 468999999999875 89999999987 57889988864
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.94 E-value=0.095 Score=40.12 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.5
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.+...+|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 36789999999999875 89999999987 67999998864
No 100
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.93 E-value=0.12 Score=38.54 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
....++|.|.|||.++. ++.|+++|+++.+|.|.++.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~~~~~g 52 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERVKKIRD 52 (99)
T ss_dssp SSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEEEECSS
T ss_pred cCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEEEEeCC
Confidence 35679999999999875 899999999997788988877654
No 101
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.92 E-value=0.082 Score=41.71 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=33.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCC--CcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p--~~v~~v~i~~d 230 (379)
...++|.|.|||.+.+ ++.|+++|+++.+ +.|.+|.+++|
T Consensus 21 ~~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 3468999999999876 8999999998865 45788888875
No 102
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.88 E-value=0.12 Score=38.78 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
....++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 50 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIFN 50 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 35679999999999876 78999999986 57889888764
No 103
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.86 E-value=0.12 Score=38.08 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=32.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
+..++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 50 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVYD 50 (95)
T ss_dssp CGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEEc
Confidence 5679999999999875 78999999986 56889888764
No 104
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.83 E-value=0.33 Score=43.26 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=30.0
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+|.|.|||.... ++.|+++|+.+ |.|.+|.+.+
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeee
Confidence 467999999999875 79999999876 5688887775
No 105
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.74 E-value=0.25 Score=37.91 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=42.6
Q ss_pred HHHHhHHHHHHHHHhh--------cccCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCCCCCeeeCC
Q 016993 293 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 356 (379)
Q Consensus 293 l~~l~~~i~~~~~~~~--------~~~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~DI~W~N 356 (379)
++++++++.++=.+.+ ...+.|.|||+|.+..+|..|.+.+... ......+..|.+..|..+..
T Consensus 36 ~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 36 LNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 4455555655544432 1235799999999999999999877654 23345678887666665544
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.69 E-value=0.14 Score=38.15 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcce-EEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~-~v~i~~d 230 (379)
....++|.|.|||.++. ++.|+++|+++ |.|. ++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~~ 45 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIRN 45 (99)
T ss_dssp CSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEEC
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEeec
Confidence 35679999999999875 89999999987 5677 8888764
No 107
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.69 E-value=0.11 Score=38.74 Aligned_cols=39 Identities=8% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 41 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKKK 41 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 4578999999999875 89999999977 568898888653
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.64 E-value=0.15 Score=36.73 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
....++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 35679999999999875 89999999987 5688888875
No 109
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=93.63 E-value=0.71 Score=41.30 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHH----HHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~----~~f~~~~p~~v~~v~i~ 228 (379)
...+||.|.|||.++. ++.|+ ++|+++ |.|.+|.+.
T Consensus 7 ~~~~~l~V~nlp~~~~----~~~l~~~L~~~F~~~--G~i~~v~~~ 46 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIK----KDELKKSLYAIFSQF--GQILDILVS 46 (282)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHHhcc--CCeEEEEEc
Confidence 5579999999999886 56655 666654 456665543
No 110
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.51 E-value=0.074 Score=39.17 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
++.+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|
T Consensus 9 ~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~~~ 46 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIPKP 46 (89)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEeeC
Confidence 6789999999999886 89999999987 67999888763
No 111
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.48 E-value=0.18 Score=37.84 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=32.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMITE 50 (103)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEECC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 5579999999999875 89999999988 56889988864
No 112
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.31 E-value=0.15 Score=39.26 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+||.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 15 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVIT 51 (116)
T ss_dssp CSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEESC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEEE
Confidence 5679999999999876 79999999987 5688888765
No 113
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.22 E-value=0.16 Score=38.59 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
.+..++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~~ 49 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMMP 49 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEC
Confidence 35679999999999875 89999999986 6788888764
No 114
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.16 E-value=0.19 Score=37.71 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=32.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|++.| |.|.+|.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~~ 45 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVLD 45 (104)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEEC
Confidence 5679999999999875 899999999834 57899988864
No 115
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.09 E-value=0.079 Score=38.65 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEEecC
Confidence 3579999999999876 79999999887 56888887754
No 116
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=93.08 E-value=0.15 Score=38.54 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
....++|.|.|||.++. ++.|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEC
Confidence 35679999999999876 78999999976 57889888864
No 117
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.00 E-value=0.15 Score=38.29 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 5679999999999875 79999999987 57889888764
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.92 E-value=0.094 Score=37.88 Aligned_cols=38 Identities=5% Similarity=0.111 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 40 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAILD 40 (85)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEECC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4578999999999886 78899999876 57888887753
No 119
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.92 E-value=0.14 Score=39.18 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=32.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...+||.|.|||.++. ++.|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~ 50 (114)
T 2do0_A 13 RLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADILED 50 (114)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEC
Confidence 4578999999999875 89999999987 57888888764
No 120
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.88 E-value=0.14 Score=40.12 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=32.9
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.+..++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.++
T Consensus 28 ~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 35679999999999875 89999999976 67999988764
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.83 E-value=0.12 Score=39.03 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 14 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 5679999999999875 89999999986 57889888864
No 122
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.82 E-value=0.19 Score=37.71 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.2
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
....++|.|.|||.++. ++.|+++|+++ + |.+|.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp SSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEeec
Confidence 35679999999999876 79999999987 4 999988864
No 123
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.64 E-value=0.22 Score=36.42 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.. ++.|+++|++. .|.++.+.+|
T Consensus 8 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEEC
Confidence 5679999999999876 78999999876 4888888865
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=92.62 E-value=0.21 Score=37.84 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=31.8
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
.+.+++|.|.|||.+.. ++.|++.|+++ |.|.+|.+.
T Consensus 18 ~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 46789999999999875 89999999987 678898876
No 125
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=92.55 E-value=0.12 Score=39.86 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 38 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 74 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVFI 74 (118)
T ss_dssp CCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 5579999999999875 89999999876 6788888765
No 126
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.48 E-value=0.1 Score=36.79 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=28.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.||.|.|||.+.. ++.|+++|++. |.|.++.+.+|
T Consensus 1 ~~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 35 (77)
T 1uaw_A 1 CKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CCEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEECC
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 4799999999886 68899999987 56888887753
No 127
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.43 E-value=0.17 Score=38.62 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
....++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 64 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIFN 64 (109)
T ss_dssp TTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEECCB
T ss_pred CCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 35679999999999876 79999999987 56888887753
No 128
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=92.37 E-value=0.14 Score=39.08 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEEC
Confidence 4579999999999876 78999999986 57888888764
No 129
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.15 E-value=0.16 Score=38.41 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=32.2
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.+..++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.++
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEECC
Confidence 35679999999999875 78999999876 67889887753
No 130
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=92.04 E-value=0.1 Score=36.62 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
||.|.|||.+.. ++.|+++|++. |.|.++.+.+
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 33 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIELPM 33 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECCCC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 689999999875 89999999987 4577776654
No 131
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.01 E-value=0.16 Score=38.94 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=30.8
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..+||.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 24 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 24 DARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCS
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEec
Confidence 358999999999876 78999999886 57888888753
No 132
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.92 E-value=0.22 Score=36.95 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=31.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
+..++|.|.|||.++. ++.|+++|+++ |.|.++.+..
T Consensus 15 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~~~~ 51 (97)
T 1why_A 15 NPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTIDHVK 51 (97)
T ss_dssp CCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEeC
Confidence 5579999999999875 89999999987 5688887764
No 133
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.74 E-value=0.19 Score=37.45 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=31.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~~~ 49 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDIT----EEEMRKLFEKY--GKAGEVFIHK 49 (99)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHHTSTT--CCCSEEEEET
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhhc--CCeEEEEEec
Confidence 5678999999999876 78999999887 5688888763
No 134
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.49 E-value=0.39 Score=35.55 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHH----HHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~----~~f~~~~p~~v~~v~i~~ 229 (379)
....+|.|.|||.+.. ++.|+ ++|+++ |.|.+|.+.+
T Consensus 7 ~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~~ 47 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELSP 47 (96)
T ss_dssp SSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEECS
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEEe
Confidence 4568999999999876 78888 999887 5788888875
No 135
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=91.40 E-value=0.33 Score=37.61 Aligned_cols=45 Identities=24% Similarity=0.133 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHHHHHhhc--------ccCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 292 KIKEIIPKLEAEQKITLK--------EKQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 292 ~l~~l~~~i~~~~~~~~~--------~~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
..++++++|.++-++.++ ..+.|.|||+|.+..+|..|.+.+...
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 345666666666555431 234799999999999999999987654
No 136
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.08 E-value=0.14 Score=39.37 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcc-eEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v-~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+++ |.| .+|.+++|
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~~d 51 (114)
T 2cpy_A 13 SAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVLVD 51 (114)
T ss_dssp SCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEECCC
T ss_pred CCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEEEC
Confidence 4579999999999876 78999999886 566 66777654
No 137
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=91.08 E-value=0.23 Score=38.64 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=31.6
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..+||.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEec
Confidence 358999999999875 89999999987 57899988864
No 138
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.97 E-value=0.16 Score=38.56 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=31.5
Q ss_pred CCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.|.|||. +.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~~ 50 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLILN 50 (102)
T ss_dssp CCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 4578999999999 765 78999999987 6799998875
No 139
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.90 E-value=0.12 Score=37.81 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.1
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEECC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 6899999999876 78899999987 5688888765
No 140
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.88 E-value=0.26 Score=37.90 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.9
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 26 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 26 QFRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 348999999999875 79999999876 57888888764
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.74 E-value=0.28 Score=36.19 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEE-EEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v-~i~~ 229 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.++ .+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~i~~ 50 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESCEQVNT 50 (96)
T ss_dssp CSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEEEEECC
T ss_pred CCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEEEEeec
Confidence 4578999999999876 78999999987 568887 4553
No 142
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=90.69 E-value=0.33 Score=36.17 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.2
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.||.|.|||.++. ++.|+++|+++ |.|.++.+.+|
T Consensus 1 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEESS
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 3799999999875 89999999988 56889998876
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=90.67 E-value=0.19 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
+|.|.|||.+.. ++.|+++|++. |.|.++.+.+
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 33 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAMLMF 33 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECCCB
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 488999999876 79999999987 5677776654
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=90.53 E-value=0.47 Score=39.06 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
....+||+|.|||..+. ++.|+++|+++ |.|.+|.+..|
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~~ 107 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNLD 107 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEec
Confidence 35568999999999875 89999999987 57889988764
No 145
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.42 E-value=0.22 Score=38.23 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=30.1
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..++|.|.|||.+.+ ++.|+++|+.+ .|.+|.+++|
T Consensus 15 ~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~~d 50 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLLKD 50 (109)
T ss_dssp HHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEECCC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEEEC
Confidence 458999999999876 89999999976 4788888764
No 146
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=90.24 E-value=0.69 Score=35.07 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=26.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
+.|.|||+|.+..+|..|.+.+.... .....+..+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 46899999999999999999886542 2234455544
No 147
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=90.09 E-value=0.48 Score=38.82 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=31.7
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..++|.|.|||.++. ++.|+++|+++.+..|.+|.+++|
T Consensus 54 ~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp --CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEec
Confidence 468999999999886 899999999875437999998865
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=90.09 E-value=0.26 Score=38.22 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCC-CcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p-~~v~~v~i~~d 230 (379)
...+||.|.|||.+.+ ++.|+++|+++.+ +.|.+|.+++|
T Consensus 15 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEEEC
Confidence 4568999999999886 7899999998643 23788888764
No 149
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.04 E-value=0.45 Score=35.86 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=26.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~~~~~~v~~AP 347 (379)
+..|.|||+|.+..+|..|.+.........+.|..|-
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 4578999999999999999987433333345566553
No 150
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=90.01 E-value=0.31 Score=34.74 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=28.3
Q ss_pred cceEEEecCCCCCCCCC--hHHHHHHHHHhhCCCcceEEEEe
Q 016993 189 QFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 189 ~~TVlV~~IP~~~~~~~--~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
++||.|.|||....++- .++.|+++|+++ |.|.++.+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~ 40 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 40 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec
Confidence 47999999998774210 268899999886 568887765
No 151
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=89.97 E-value=0.46 Score=35.34 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
+..+||.|.|||.++. ++.|+++|+++ |.|.++.+.
T Consensus 25 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~~~ 60 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDFKHY 60 (101)
T ss_dssp SSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEEEEE
T ss_pred CCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEEEEe
Confidence 5678999999999875 79999999987 568888775
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=89.79 E-value=0.27 Score=40.05 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=31.8
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
+++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|.
T Consensus 3 ~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~ 39 (167)
T 2cjk_A 3 SCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDP 39 (167)
T ss_dssp GGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCT
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECC
Confidence 68999999999885 89999999986 578899888763
No 153
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=89.67 E-value=0.15 Score=37.61 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=26.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
+..++|.|.|||.+.. ++.|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~~~ 48 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS----IDEILDFFYGY--QVIPGSVCL 48 (95)
T ss_dssp --CEEEEEECCCTTCC----HHHHHHHTTTS--CBCTTCCEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCccceEEE
Confidence 5579999999999876 79999999876 445544444
No 154
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.62 E-value=0.27 Score=37.10 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.+ ++.|+++|+++. +.+|.+++|
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G---~~~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRAT----ENDIYNFFSPLN---PMRVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCC----HHHHHHSSCSCC---CSEEEEEES
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHcC---ceEEEEEEC
Confidence 4578999999999876 899999998763 348888764
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=89.22 E-value=0.26 Score=35.82 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=29.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P~ 350 (379)
..|.|||+|.+..+|..|.+.+... ....+.+..||...
T Consensus 39 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 4579999999999999999977654 23345678887643
No 156
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.01 E-value=0.52 Score=35.08 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=28.2
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 349 (379)
+..+.|||+|.+..+|..|.+.+.... ...+.|..|-.+
T Consensus 52 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 52 SSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp SEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 356899999999999999998765542 234556666443
No 157
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.71 E-value=0.39 Score=36.76 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=29.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
.+.++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.
T Consensus 8 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~ 43 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVLLP 43 (111)
T ss_dssp EEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 3568999999999875 89999999986 568887765
No 158
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=88.65 E-value=0.3 Score=38.94 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+||.|.|||.+++ ++.|+++|+++ |.|.+|.+.+
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 81 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 81 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 4568999999999875 89999999987 5688887764
No 159
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.62 E-value=0.9 Score=33.48 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 349 (379)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|-.+
T Consensus 54 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 54 GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 356899999999999999998776542 345667766443
No 160
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=88.60 E-value=0.88 Score=32.56 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh----C----C-CcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----P-DTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~----~----p-~~v~~v~i~~d 230 (379)
...+||.|.|||.+.. ++.|+++|++. . | +.|.++.+.++
T Consensus 4 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 4579999999999875 79999999987 3 1 16888887654
No 161
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=88.26 E-value=0.36 Score=38.64 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-cceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~v~~v~i~~d 230 (379)
...++|.|.|||.+.+ ++.|+++|+++.+- .|.+|.+++|
T Consensus 42 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~G~v~~v~~v~i~~d 82 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS----VEDVQNFLSDCTIHDGAAGVHFIYT 82 (136)
T ss_dssp CTTCEEEEESCCTTCC----HHHHHHHTTTCCCSSSSTTEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhCCcCceeEEEEEEC
Confidence 4578999999999876 89999999986321 1778888864
No 162
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=88.08 E-value=0.43 Score=37.65 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=29.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceE--EEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~--v~i~~d 230 (379)
...++|+|.|||.+++ ++.|+++|+++ |.|.. |.+++|
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~~d 60 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVIKD 60 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECCBC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEEEc
Confidence 4568999999999886 68899999987 45644 676654
No 163
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.97 E-value=0.33 Score=37.50 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=30.3
Q ss_pred CCcceEEEecCCCC-CCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|||.+ .+ ++.|+++|+++ |.|.+|.+.
T Consensus 23 ~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i~ 59 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYILM 59 (112)
T ss_dssp CCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEEE
T ss_pred CCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 45799999999997 75 68899999876 678898885
No 164
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=87.75 E-value=0.58 Score=39.77 Aligned_cols=36 Identities=6% Similarity=0.203 Sum_probs=30.9
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.+||.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEEC
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEEC
Confidence 48999999999865 89999999986 56999988864
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=87.73 E-value=0.48 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcce--EEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY--RSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~--~v~i~~d 230 (379)
...++|.|.|||.+.+ ++.|+++|+++ + |. +|.+++|
T Consensus 40 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--~-i~~~~v~i~~d 78 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT----KEEIVQFFSGL--E-IVPNGITLPVD 78 (126)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHTTTS--C-EEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC--C-ceeeEEEEEEC
Confidence 4578999999999876 89999999976 3 55 7776653
No 166
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=87.64 E-value=0.73 Score=32.69 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~ 335 (379)
++.|.|||+|.+..+|..|.+.+..
T Consensus 45 ~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 45 KTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp BCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred cEeEEEEEEECCHHHHHHHHHHhcC
Confidence 4578999999999999999986544
No 167
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=87.15 E-value=0.34 Score=38.99 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.+ +++|+++|+++. +.+|.+++|
T Consensus 44 ~~~~~lfV~nLp~~~t----e~dL~~~F~~~G---i~~v~i~~d 80 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT----ENDIYNFFSPLN---PVRVHIEIG 80 (139)
T ss_dssp -CCCCEECCSCCTTCC----HHHHHHHHCSCC---CSEEECCCS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhcC---CeEEEEEEC
Confidence 4568999999999876 899999999863 557777654
No 168
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=86.90 E-value=0.81 Score=34.68 Aligned_cols=37 Identities=11% Similarity=-0.054 Sum_probs=28.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 348 (379)
+.|.|||+|.+..+|..|.+.+.... .....+..|++
T Consensus 55 ~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 55 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 57899999999999999999876542 23455677763
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=86.77 E-value=0.43 Score=36.14 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCC-CcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p-~~v~~v~i~~d 230 (379)
...++|.|.|||.+.+ ++.|+++|+.+.+ +.|.+|.+.+|
T Consensus 9 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i~~~ 49 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHFLLN 49 (107)
T ss_dssp SSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEECCCC
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEEEEC
Confidence 4678999999999886 6889999998642 23777777653
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.74 E-value=1.1 Score=32.81 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (379)
...++|.|.|||.++. ++.|+++|+++ |.|.+|
T Consensus 6 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4568999999999876 89999999986 557776
No 171
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.67 E-value=0.94 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=29.7
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHh---hCCCcceEEEEe
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMVV 228 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~---~~p~~v~~v~i~ 228 (379)
...+|.|+|+|+++. ++.|+-|||+ -.+|.|.++...
T Consensus 7 ~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred CccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEEc
Confidence 458999999999774 7899999998 466788776543
No 172
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.47 E-value=0.9 Score=33.57 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=29.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESR 350 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P~ 350 (379)
..+.|||+|.+..+|..|.+.+.... ...+.|..|-.+.
T Consensus 50 ~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 50 DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 46899999999999999998776542 3456677775443
No 173
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.35 E-value=0.97 Score=33.64 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=27.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P 349 (379)
..+.|||+|.+..+|..|.+.+... .-..+.|..|-.+
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 4689999999999999999876543 2234557666443
No 174
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.35 E-value=0.94 Score=33.57 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=26.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 347 (379)
+..+.|||+|.+..+|..|.+.+... .-..+.|..|-
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 51 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 35689999999999999999976543 22345566653
No 175
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.24 E-value=1.4 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=26.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
++.|.|||+|.+..+|..|.+ +.... ...+.|..|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 467899999999999999998 54432 2345566653
No 176
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.17 E-value=0.76 Score=33.71 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=27.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 457899999999999999999765432 2345677763
No 177
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.99 E-value=1.2 Score=32.70 Aligned_cols=35 Identities=20% Similarity=0.036 Sum_probs=26.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC----CCCeEEeeCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQL----VDTWTVSDAP 347 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~~----~~~~~v~~AP 347 (379)
.+.|||+|.+..+|..|.+.+.... ...+.|..|-
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 6799999999999999998765432 2345676663
No 178
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=85.98 E-value=0.97 Score=37.70 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+.+ |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 4568999999999875 89999999876 67999988864
No 179
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.89 E-value=0.94 Score=33.36 Aligned_cols=35 Identities=29% Similarity=0.081 Sum_probs=26.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 347 (379)
.+.|||+|.+..+|+.|.+.+... ....+.|..|-
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 678999999999999999876543 22345566653
No 180
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=85.77 E-value=1.1 Score=39.14 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=31.5
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..++|+|.|||.++. ++.|+++|+++....|.+|.+.+|
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEec
Confidence 467999999999886 899999999874327999999876
No 181
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.74 E-value=1.7 Score=31.67 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=28.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 349 (379)
+..+.|||+|.+..+|..|.+.+.... ...+.|..|.+.
T Consensus 52 ~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 52 SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 345669999999999999998765442 335667777654
No 182
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.62 E-value=1.4 Score=33.47 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=27.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|-
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 457899999999999999998765432 2345566653
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=85.54 E-value=0.66 Score=39.01 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=31.8
Q ss_pred CcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 188 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 188 ~~~TVlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
++++|.|.|||. +.. ++.|+++|+++ |.|.+|.+.+|-
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEEeCC
Confidence 468999999999 765 89999999987 568888888764
No 184
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.46 E-value=1.1 Score=33.03 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=27.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~ 348 (379)
+..+.|||+|.+..+|..|.+.+... ....+.|..|-.
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34679999999999999999876543 223455666643
No 185
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=85.30 E-value=0.86 Score=34.26 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=29.7
Q ss_pred CcceEEEecCCCCCCCCC--hHHHHHHHHHhhCCCcceEEEEe
Q 016993 188 QQFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~--~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
..++|.|.|||....++- .++.|+++|+++ |.|.++.+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~ 54 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 54 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEee
Confidence 468999999998774210 268899999987 568887765
No 186
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=85.29 E-value=0.58 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.6
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEE
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i 227 (379)
..++|.|.|||.+.. ++.|+++|+++ .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t----~~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSN----CQEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCC----HHHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHhhC---CeEEEEE
Confidence 468999999999876 79999999887 4777766
No 187
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=85.21 E-value=1.5 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=25.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
+.+.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 57899999999999999998765432 223555554
No 188
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.16 E-value=0.83 Score=33.32 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
++.+.|||+|.+..+|..|.+.+...
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 55 RSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCC
Confidence 44689999999999999999976543
No 189
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.13 E-value=0.93 Score=33.01 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=26.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhc-C--CCCCeEEeeCCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHA-Q--LVDTWTVSDAPE 348 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~-~--~~~~~~v~~AP~ 348 (379)
.+.|||+|.+..+|..|.+.+.. . ....+.|..|-.
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 57999999999999999987765 2 223455666643
No 190
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.04 E-value=1.5 Score=32.54 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=27.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~P 349 (379)
..+.|||+|.+..+|..|.+.+... ....+.|..|-.+
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 5789999999999999999876543 2234556666443
No 191
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=84.95 E-value=0.97 Score=31.34 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.5
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q 331 (379)
++.|.|||+|.+..+|..|.+
T Consensus 39 ~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 39 RHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp TSCBEEEEECSCHHHHHHHHS
T ss_pred CcCcEEEEEECCHHHHHHHHH
Confidence 457899999999999999876
No 192
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.89 E-value=0.97 Score=33.25 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=25.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
+..+.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 446899999999999999999765432 223445544
No 193
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=84.52 E-value=1.7 Score=31.97 Aligned_cols=36 Identities=6% Similarity=-0.080 Sum_probs=30.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
..+..++|.||+.+.+ ++.|++.|.++ |.|.++++.
T Consensus 5 ~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l~ 40 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHPY 40 (89)
T ss_dssp CCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEEE
T ss_pred CccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEEc
Confidence 5678999999999886 79999999998 568888873
No 194
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.52 E-value=1.2 Score=32.83 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (379)
...++|.|.|||.++. ++.|+++|+++.
T Consensus 17 ~~~~~l~V~nL~~~~t----~~~l~~~F~~~G 44 (97)
T 2e5j_A 17 PLAADVYVGNLPRDAR----VSDLKRALRELG 44 (97)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCcCc----HHHHHHHHHhcC
Confidence 4578999999999886 799999999874
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=84.45 E-value=1.3 Score=36.03 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|+|.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 92 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 3468999999999875 89999999976 57888888764
No 196
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=1.3 Score=32.55 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.1
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~ 335 (379)
+..|.|||+|.+..+|..|.+.+..
T Consensus 50 ~~~g~afV~f~~~~~a~~A~~~l~g 74 (99)
T 2div_A 50 IPAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp CEEEEEEEECSCHHHHHHHHHTTTT
T ss_pred CcCCEEEEEeCCHHHHHHHHHHHcC
Confidence 3458999999999999999986654
No 197
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.87 E-value=1.4 Score=32.43 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=26.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
..+.|||+|.+..+|..|.+.+.... ...+.|..|-
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999765432 2345566553
No 198
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=83.78 E-value=0.88 Score=32.88 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=25.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 349 (379)
++.|.|||+|.+.. |..|.+.+.... .....|..|..+
T Consensus 41 ~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 41 KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45789999999999 999988665432 234456666443
No 199
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.69 E-value=1 Score=34.28 Aligned_cols=37 Identities=22% Similarity=0.014 Sum_probs=27.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 348 (379)
..+.|||+|.+..+|..|.+.+.... ...+.|..|+.
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 56789999999999999998776542 23455666653
No 200
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.68 E-value=1.3 Score=32.85 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=26.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC---CCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL---VDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~---~~~~~v~~A 346 (379)
+..|.|||+|.+..+|..|.+.+.... -..+.|..|
T Consensus 49 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 49 VSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 357899999999999999998765433 223445555
No 201
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=83.33 E-value=1.1 Score=33.50 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=26.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~AP 347 (379)
+..+.|||+|.+..+|..|.+.+....- ..+.|..|.
T Consensus 68 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 68 RSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4578999999999999999997654422 234455543
No 202
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=83.32 E-value=1.2 Score=32.49 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=21.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
++.+.|||+|.+..+|..|.+.+...
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 55 MPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999876543
No 203
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.23 E-value=0.92 Score=31.57 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhh
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLH 334 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~ 334 (379)
++.|.|||+|.+..+|..|.+.+.
T Consensus 40 ~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 40 RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CcCceEEEEEcCHHHHHHHHHhCC
Confidence 457899999999999999998665
No 204
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.03 E-value=1.6 Score=33.50 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=30.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCCCCCCee
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPESRELI 353 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP~P~DI~ 353 (379)
.-|.|||+|.+..+|..|.+.+... .-..+.|..|-...++.
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 4689999999999999999876432 22356677776655554
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.01 E-value=1.1 Score=31.97 Aligned_cols=26 Identities=38% Similarity=0.351 Sum_probs=21.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
+..|.|||+|.+..+|..|.+.+...
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 45 KCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp SCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 45789999999999999999876543
No 206
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=82.47 E-value=1.9 Score=35.96 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeec
Confidence 4569999999999875 79999999986 56888888764
No 207
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=82.35 E-value=2.3 Score=32.94 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=27.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 348 (379)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|-.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 356899999999999999998765442 23455666643
No 208
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=82.34 E-value=1.5 Score=37.50 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCcceEEEecCC-CCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP-~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
+...||+|.||| .++. ++.|.+.|+++ |.|.+|.+.+|
T Consensus 2 ~~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~~~ 40 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFMKS 40 (205)
T ss_dssp CCCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEECTT
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEecC
Confidence 356899999999 6664 78999999876 67999998876
No 209
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=82.33 E-value=1.1 Score=32.65 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=21.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
++.+.|||+|.+..+|..|.+.+...
T Consensus 55 ~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 55 KPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp CEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCC
Confidence 34789999999999999999876543
No 210
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=82.09 E-value=1.3 Score=33.26 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=29.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCC-CeEEeeCCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVD-TWTVSDAPES 349 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~-~~~v~~AP~P 349 (379)
++.|.|||+|.+..+|..|.+.+... ... .+.|..|-+-
T Consensus 59 ~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 59 KTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp BSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 45789999999999999999976543 222 4667777543
No 211
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=81.93 E-value=1.9 Score=36.76 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=31.7
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...+|.|.|||.++. ++.|+++|+++ |.|.++.+.+|
T Consensus 102 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~d 138 (213)
T 4f02_A 102 GVGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVCD 138 (213)
T ss_dssp CTTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred ccccceECCcccccH----HHHHHHHHhhc--CCeEEEEeecc
Confidence 457899999999876 79999999987 57999988875
No 212
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.57 E-value=1.2 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=24.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
++.|.|||+|.+..+|..|.+ +.... .....|..|
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 48 NKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 457899999999999999999 54332 223445554
No 213
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=81.24 E-value=0.87 Score=31.56 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
++.|.|||+|.+..+|..|.+.
T Consensus 39 ~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 39 KRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSCCCEEEECSSSHHHHHHHTT
T ss_pred CcCCEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999884
No 214
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.20 E-value=0.85 Score=34.23 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
++.|.|||+|.+..+|..|.+.
T Consensus 53 ~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 53 RVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp CEEEEEEEECSSSHHHHHHHTT
T ss_pred CEeeEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999964
No 215
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=80.86 E-value=2.2 Score=33.85 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=29.8
Q ss_pred ceEEEecC----CCCCCCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 190 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 190 ~TVlV~~I----P~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
..|+|.|+ |..+. ++.|++||+++ |+|.++.+..|-
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp 42 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDP 42 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 46899999 98775 89999999976 578888877764
No 216
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=80.73 E-value=1.6 Score=31.32 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=24.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
++.|.|||+|.+..+|..|. .+.... ...+.|..|
T Consensus 46 ~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 46 HPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp SCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 45789999999999999998 544332 223456655
No 217
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=80.66 E-value=1.7 Score=32.28 Aligned_cols=37 Identities=19% Similarity=0.024 Sum_probs=25.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~ 348 (379)
+..|.|||+|.+..+|..|. .+... .-..+.|..|-.
T Consensus 54 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 54 KFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred ccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 35789999999999999999 44332 123455666643
No 218
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=80.57 E-value=1.9 Score=35.20 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=28.3
Q ss_pred ccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 310 EKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 310 ~~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
.++.|.|||+|.+..+|..|.+.+.... ...+.|..|.
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 3567899999999999999999776542 2335566663
No 219
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.09 E-value=2.7 Score=31.62 Aligned_cols=36 Identities=14% Similarity=-0.092 Sum_probs=25.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP 347 (379)
.-|.|||+|.+..+|..|.+.+... .-..+.|..|-
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3589999999999999999866432 22345566664
No 220
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=79.67 E-value=3.4 Score=31.11 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=31.2
Q ss_pred CCcceEEEecCC--CCCCCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 187 PQQFAVLVRDLP--DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 187 ~~~~TVlV~~IP--~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
..+++|++.|+. .++.+ ..++.|++.|+++ |.|.+|.+++|-
T Consensus 6 ~~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~ 49 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIP 49 (105)
T ss_dssp SCCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECS
T ss_pred CCCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCC
Confidence 457899999996 34432 3378999999987 679999998863
No 221
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.52 E-value=1.7 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...++|.|.|||.++. ++.|+++|+++ .++.+++|
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~-----~~~~~~~~ 47 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTT----EETLKESFDGS-----VRARIVTD 47 (102)
T ss_dssp CCCSSEEEECCCTTCC----HHHHHHTSTTC-----SEEEEEEC
T ss_pred CCCCEEEEeCCCCccC----HHHHHHHhcCC-----eEEEEEec
Confidence 5679999999999876 78899999853 35555554
No 222
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.37 E-value=2 Score=31.13 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=24.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (379)
...++|.|.|||.++. ++.|+++|+++.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~G 33 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVT----ADDLRQLFGDRK 33 (93)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcC
Confidence 5678999999999875 899999999874
No 223
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=79.33 E-value=1.3 Score=35.71 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=30.3
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
...+|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 86 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~ 122 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLMLD 122 (167)
T ss_dssp HCEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECCCS
T ss_pred CCCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEEEc
Confidence 357999999999876 78999999976 56888877653
No 224
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=79.25 E-value=3.9 Score=31.91 Aligned_cols=37 Identities=30% Similarity=0.332 Sum_probs=28.7
Q ss_pred c-eEEEEeCCHHHHHHHHHHhhcCCC----CCeEEeeCCCCC
Q 016993 314 G-AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESR 350 (379)
Q Consensus 314 ~-~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~AP~P~ 350 (379)
| .|||+|.+..+|..|.+.+....- ..+.|..|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5 599999999999999998876643 246788775444
No 225
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=79.23 E-value=1.1 Score=32.12 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=19.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
++.|.|||+|.+..+|..|.+.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 51 RSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CEEEEEEEEESSTHHHHHHHHS
T ss_pred ccccEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999875
No 226
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.08 E-value=1.8 Score=32.75 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=26.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 57899999999999999998765432 223445555
No 227
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.05 E-value=2.5 Score=31.89 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
..+.|||+|.+..+|..|.+.+...
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 55 SRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999999999999876543
No 228
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=79.04 E-value=1.5 Score=34.02 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=27.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 348 (379)
+..|.|||+|.+..+|..|.+.+.... -....+..+|+
T Consensus 69 ~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 69 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred cceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 346899999999999999999887652 22344555553
No 229
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.01 E-value=0.95 Score=35.13 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~ 224 (379)
...++|.|.|||.+.. ++.|+++|+.+ |.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAE----NKHVIDFFKKL--DIVED 54 (124)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS--CBCTT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCccc
Confidence 3458999999999876 79999999876 34444
No 230
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.89 E-value=1.8 Score=33.02 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
++.|.|||+|.+..+|..|.+.
T Consensus 54 ~~~G~afV~F~~~~~a~~Al~~ 75 (109)
T 2dnn_A 54 RNNGNGLVKFLSPQDTFEALKR 75 (109)
T ss_dssp CCCSEEEEECSSHHHHHHHHHT
T ss_pred CCCeEEEEEECCHHHHHHHHhc
Confidence 4689999999999999999853
No 231
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=78.44 E-value=2.4 Score=31.81 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=25.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC----CCCeEEeeC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL----VDTWTVSDA 346 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~----~~~~~v~~A 346 (379)
.-|.|||.|.+..+|..|.+.+.... ...+.|+.|
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 46899999999999999998766432 223445554
No 232
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.40 E-value=0.75 Score=33.19 Aligned_cols=37 Identities=19% Similarity=-0.023 Sum_probs=23.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCCCeEEeeCCC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPE 348 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~~~~~~v~~AP~ 348 (379)
..|.|||+|.+..+|+.+.+.........+.+..|..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 5789999999999997653321111333445555543
No 233
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=78.22 E-value=2.5 Score=37.65 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
+..++|.|.|||.+.. ++.|+++|+++ |.|.++.+.
T Consensus 205 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 4678999999999775 89999999976 678888776
No 234
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=79.64 E-value=0.43 Score=36.61 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceE
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~ 224 (379)
...++|.|.|||.+.. ++.|+++|+++ |.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 36 (116)
Confidence 4578999999999876 68899999877 34544
No 235
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.07 E-value=1.6 Score=33.73 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC
Q 016993 314 GAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 314 ~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
|.|||+|.+..+|..|.+.+...
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 68999999999999999987654
No 236
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.01 E-value=1.7 Score=32.53 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP 347 (379)
-|.|||+|.+..+|..|.+.+... ....+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 689999999999999999865422 12244566664
No 237
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=77.51 E-value=2.4 Score=33.61 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=26.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999765432 223446555
No 238
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.36 E-value=2.4 Score=31.89 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=27.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCCCCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPESR 350 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP~P~ 350 (379)
-+.|||+|.+..+|..|.+.+... .-..+.|..|-...
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 478999999999999999876543 22345566665433
No 239
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.11 E-value=3 Score=32.38 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCC
Q 016993 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~~~----~~~~~~v~~AP 347 (379)
-|.|||+|.+..+|..|.+.+... ....+.|..|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 589999999999999999865421 22345566664
No 240
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=76.63 E-value=2.3 Score=31.18 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~A 346 (379)
.+.|.|||+|.+..+|..|.+.+....- ....|..|
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3689999999999999999998765432 34556666
No 241
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.38 E-value=2.1 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=24.6
Q ss_pred Ccce-EEEecCCCCCCCCChHHHHHHHHHhhCCCcceEE
Q 016993 188 QQFA-VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (379)
Q Consensus 188 ~~~T-VlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v 225 (379)
...| +.|.|||.+...+..+..|.+.|+++ +|+|.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 3455 88999999886322233466888876 3577775
No 242
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.01 E-value=1.8 Score=30.67 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHh
Q 016993 312 QLGAALVFFTSRVAAASAAQSL 333 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~ 333 (379)
..|.|||+|.+..+|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3689999999999999999866
No 243
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=75.96 E-value=1.3 Score=32.11 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=15.6
Q ss_pred CcceEEEEeCCHHHHHHH
Q 016993 312 QLGAALVFFTSRVAAASA 329 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a 329 (379)
+.|.|||+|.+..+|..+
T Consensus 47 srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 578999999999999843
No 244
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=75.88 E-value=2.7 Score=35.86 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=29.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcc--eEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v--~~v~i~~ 229 (379)
+..+||.|.|||.+.. ++.|+++|++. |.| .++.+..
T Consensus 121 ~p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~~~ 159 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKVFS 159 (205)
T ss_dssp CCCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEECS
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEEEc
Confidence 4568999999999875 89999999987 445 6777654
No 245
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=75.85 E-value=2.5 Score=31.12 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
+..|.|||+|.+..+|..|...+...
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999876543
No 246
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=75.69 E-value=3.1 Score=34.71 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-cceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~v~~v~i~~ 229 (379)
+..++|.|.|||.+.. ++.|+++|+++ | .|.++.+..
T Consensus 118 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i~~ 155 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFFQ 155 (198)
T ss_dssp CCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEESS
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEEEe
Confidence 4579999999999875 89999999987 5 788888754
No 247
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=75.63 E-value=2.6 Score=33.31 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=26.2
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
+..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 87 ~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 87 ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp SCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 457799999999999999998665432 234556555
No 248
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.26 E-value=1.9 Score=32.43 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.1
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q 331 (379)
.+.|.|||+|.+..+|..|..
T Consensus 50 ~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 50 AFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SCCCEEEEEESSHHHHHHHHT
T ss_pred CCccEEEEEECCHHHHHHHHH
Confidence 457899999999999999988
No 249
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=74.94 E-value=3.1 Score=32.13 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCcceEEEecC--CCCCCCCChHHHHHHHHHhhCCCcceEEEEeecCc
Q 016993 187 PQQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (379)
Q Consensus 187 ~~~~TVlV~~I--P~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~~ 232 (379)
+.+++|.+.|+ |.++.+ ..++.|++.|+++ |.|.+|.++.|..
T Consensus 18 ~ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp HSCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 35799999998 555543 4578899999876 6799999988743
No 250
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.82 E-value=3.3 Score=31.84 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=29.9
Q ss_pred CCcceEEE--ecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV--~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...++|.| -|||.+++ ++.|+++|+++ |.|.+|.+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEECCT
T ss_pred CCCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEEEeC
Confidence 45689999 55998875 89999999988 4788887754
No 251
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=74.74 E-value=1.9 Score=32.42 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.4
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q 331 (379)
++.|.|||+|.+..+|..|.+
T Consensus 53 ~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 53 KRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp TTCSEEEEEBSSHHHHHHHHT
T ss_pred CEeeEEEEEECCHHHHHHHHH
Confidence 467899999999999999998
No 252
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.50 E-value=2.5 Score=32.06 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.7
Q ss_pred cceEEEEeCCHHHHHHHHHHhh
Q 016993 313 LGAALVFFTSRVAAASAAQSLH 334 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~ 334 (379)
-|.|||+|.+..+|..|.+.+.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999998654
No 253
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.23 E-value=2.6 Score=31.05 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (379)
...++|.|.|||.++. ++.|+++|+++
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSAT----EETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC
Confidence 4579999999999875 78999999875
No 254
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=74.13 E-value=2.1 Score=30.41 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhh
Q 016993 312 QLGAALVFFTSRVAAASAAQSLH 334 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~ 334 (379)
..|.|||+|.+..+|..|. .+.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcC
Confidence 4789999999999999998 544
No 255
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=73.79 E-value=5.7 Score=32.19 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=41.8
Q ss_pred ccCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCCC--------CCCeeeCCCCCChhHHHHHHHHHH
Q 016993 310 EKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE--------SRELIWNNLNIKFFQRQIRHGWNI 372 (379)
Q Consensus 310 ~~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP~--------P~DI~W~Nl~~~~~~r~~r~~~~~ 372 (379)
.+..|.|||+|.+..+|..|.+ +... ....+.+..|.. ..-|.=.||.....+.-++.++.-
T Consensus 51 ~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 51 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED 122 (175)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTT
T ss_pred CccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3567899999999999999996 3322 122344555542 245777888877777777766543
No 256
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=73.62 E-value=3.4 Score=30.37 Aligned_cols=28 Identities=7% Similarity=0.260 Sum_probs=24.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (379)
...++|.|.|||.++. ++.|+++|+++.
T Consensus 15 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~G 42 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKS----VAELKVAISELF 42 (101)
T ss_dssp SCSEEEEEECCCTTSC----HHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhC
Confidence 3578999999999886 789999999873
No 257
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=72.83 E-value=2.8 Score=36.84 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=32.0
Q ss_pred CCcceEEEecCCCCCCC-----CChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKG-----QSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~-----~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+||.|.|||.++.+ ...++.|+++|+++ |.|.+|.++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC
Confidence 56799999999987630 01289999999987 6799998873
No 258
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=72.64 E-value=3.9 Score=32.28 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.4
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCC----CCeEEeeCCCC
Q 016993 315 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPES 349 (379)
Q Consensus 315 ~aFVtF~s~~~A~~a~Q~~~~~~~----~~~~v~~AP~P 349 (379)
.|||+|.+..+|..|.+.+....- ..++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999998876543 34667777543
No 259
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=72.59 E-value=2.2 Score=32.50 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~ 335 (379)
+..|.|||+|.+..+|..|.+.+..
T Consensus 80 ~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 80 LSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CcCcEEEEEECCHHHHHHHHHHcCC
Confidence 4578999999999999999987644
No 260
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=72.57 E-value=4.2 Score=31.13 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=25.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 347 (379)
...|.|||+|.+..+|..|. .+... ....+.|..|-
T Consensus 76 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 76 HPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp SCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45789999999999999999 44332 22335566653
No 261
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.16 E-value=2.6 Score=30.64 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=23.5
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCC
Q 016993 315 AALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPES 349 (379)
Q Consensus 315 ~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~P 349 (379)
.|||+|.+..+|..|.+ +.... -..+.|..|.+.
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 99999999999999998 54332 223345555443
No 262
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=71.97 E-value=2.8 Score=33.31 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=24.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC-C-CCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL-V-DTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~-~-~~~~v~~A 346 (379)
++.|.|||+|.+..+|..|.+ +.... . ....|..|
T Consensus 86 ~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 86 RQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp CEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 457899999999999999998 43322 2 23446655
No 263
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=71.92 E-value=3.5 Score=33.50 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=26.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~A 346 (379)
+..|.|||+|.+..+|..|.+.+....- ..+.|..|
T Consensus 97 ~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 97 QSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 4578999999999999999998654322 23446655
No 264
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=71.44 E-value=5.1 Score=34.49 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=31.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-cceEEEEee
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~v~~v~i~~ 229 (379)
+..++|.|.|||.+.. ++.|+++|+++ | .|.++.+..
T Consensus 149 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~~ 186 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFFQ 186 (229)
T ss_dssp CSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEECS
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEEE
Confidence 4579999999999875 89999999987 5 788888754
No 265
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=71.36 E-value=6.2 Score=32.62 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=26.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
+.|.|||+|.+..+|..|.+.+.... ...+.+..|
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 47899999999999999999765542 234456655
No 266
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.28 E-value=2 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
+..|.|||+|.+..+|..|.+.
T Consensus 55 ~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 55 QGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SCSSCEEEECSSHHHHHHHGGG
T ss_pred CcceEEEEEECCHHHHHHHHHh
Confidence 4678999999999999999875
No 267
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=71.01 E-value=3 Score=31.45 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=25.2
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC-CCCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ-LVDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~-~~~~~~v~~A 346 (379)
...|.|||+|.+..+|..|.+..... +...+.+..|
T Consensus 65 ~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 65 RSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 45789999999999999999865321 1223445555
No 268
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=70.60 E-value=2 Score=33.78 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=19.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
++.|.|||+|.+..+|..|.+.
T Consensus 82 rsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 82 KITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSCSEEEEEESSTTHHHHHHTT
T ss_pred CCceEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999985
No 269
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=70.53 E-value=2 Score=33.05 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=19.2
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q 331 (379)
++.|.|||+|.+..+|..|.+
T Consensus 59 ~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 59 RQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCeEEEEEECCHHHHHHHHh
Confidence 457899999999999999998
No 270
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=70.18 E-value=4.1 Score=33.17 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=25.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
..|.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 113 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 113 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 46899999999999999998765432 223445444
No 271
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.11 E-value=3.9 Score=30.81 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (379)
...++|.|.|||.++. ++.|+++|+++.
T Consensus 23 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~G 50 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVT----ERDLVSLFARFQ 50 (115)
T ss_dssp SCCSEEEEECCCTTCC----HHHHHHHTHHHH
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhC
Confidence 4568999999999876 799999999873
No 272
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=69.90 E-value=3.1 Score=30.25 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (379)
...++|.|.|||.++. ++.|+++|+++
T Consensus 14 ~~~~~l~V~nL~~~~t----~~~l~~~F~~~ 40 (96)
T 1fjc_A 14 RAARTLLAKNLSFNIT----EDELKEVFEDA 40 (96)
T ss_dssp TGGGEEEEESCCSSCC----HHHHHHHHCSE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhhC
Confidence 5679999999999885 78999999876
No 273
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.43 E-value=2.3 Score=31.55 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.0
Q ss_pred CcceEEEEeCCHHHHHHHHHH
Q 016993 312 QLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
..+.|||+|.+..+|..|.+.
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 468999999999999999886
No 274
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.35 E-value=3 Score=31.64 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=25.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC-CCCCeEEeeC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ-LVDTWTVSDA 346 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~-~~~~~~v~~A 346 (379)
+..+.|||+|.+..+|..|.+.+... .-..+.|+.|
T Consensus 57 ~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 57 KSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred ccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 45789999999999999998865431 1223456666
No 275
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.89 E-value=3 Score=31.65 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=25.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~~v~~AP 347 (379)
+..|.|||+|.+..+|..|.+. ... .-..+.|..|-
T Consensus 67 ~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 67 RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp SCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4578999999999999999876 221 12234566553
No 276
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.61 E-value=2 Score=33.51 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred ccCcceEEEEeCCHHHHHHHHHH
Q 016993 310 EKQLGAALVFFTSRVAAASAAQS 332 (379)
Q Consensus 310 ~~~~~~aFVtF~s~~~A~~a~Q~ 332 (379)
.++.|.|||+|.+..+|..|.+.
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 34678999999999999999985
No 277
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=68.55 E-value=4.1 Score=36.36 Aligned_cols=37 Identities=8% Similarity=0.219 Sum_probs=30.6
Q ss_pred CcceEEEecCCCC-CCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 188 QQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 188 ~~~TVlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
..++|.|.|||.+ .. ++.|+++|+.+ |.|.++.+.+|
T Consensus 209 ~~~~l~v~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 246 (292)
T 2ghp_A 209 EGREIMIRNLSTELLD----ENLLRESFEGF--GSIEKINIPAG 246 (292)
T ss_dssp TTTEEEEEEECTTTCC----HHHHHHHHGGG--SCEEEEECCSC
T ss_pred CCceEEEECCCcccCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 4589999999998 54 89999999986 57888887653
No 278
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=67.72 E-value=2 Score=34.34 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.8
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q 331 (379)
++.|.|||+|.+..+|..|.+
T Consensus 84 ~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 84 RVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp CSSCCCEEECSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHh
Confidence 467899999999999999984
No 279
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=65.65 E-value=5.5 Score=29.88 Aligned_cols=43 Identities=7% Similarity=-0.037 Sum_probs=31.7
Q ss_pred CCcceEEEecC--CCCCCCC----ChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 187 PQQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 187 ~~~~TVlV~~I--P~~~~~~----~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
..+++|.+.|+ |.++.++ ...+.|++.|+++ |.|.+|.+++|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~ 51 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 51 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCB
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccC
Confidence 35789999998 7666541 1246788888876 679999998765
No 280
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=65.13 E-value=13 Score=29.67 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=43.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCe-------------------EEeeCCCCCCeeeCCCCCChhHHHHHHH
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW-------------------TVSDAPESRELIWNNLNIKFFQRQIRHG 369 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~--~~~~~-------------------~v~~AP~P~DI~W~Nl~~~~~~r~~r~~ 369 (379)
+..|.|||+|.+..+|..|.+..... ....| .....+.+.-|.-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 46799999999999999998764321 00111 1122344567888999888888888887
Q ss_pred HHHhh
Q 016993 370 WNIVQ 374 (379)
Q Consensus 370 ~~~~~ 374 (379)
+.-..
T Consensus 91 F~~~G 95 (158)
T 2kn4_A 91 FEKYG 95 (158)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 76543
No 281
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.98 E-value=2.6 Score=32.53 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=25.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~~--~~~~v~~AP 347 (379)
++.|.|||+|.+..+|..|.+ +....- ....|..|-
T Consensus 65 ~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 65 KATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 457899999999999999998 433221 234455553
No 282
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.75 E-value=3.7 Score=30.95 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhh
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLH 334 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~ 334 (379)
+..|.|||+|.+..+|..|. .+.
T Consensus 65 ~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 65 RSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp SCCCCEEEEESCGGGHHHHH-HHT
T ss_pred ccCcEEEEEeCcHHHHHHHH-HcC
Confidence 45789999999999999999 544
No 283
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=63.71 E-value=4.1 Score=31.75 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.4
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
+..|.|||+|.+. +|..|.+.+...
T Consensus 65 ~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 65 LNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4578999999999 999999887664
No 284
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=63.47 E-value=9.4 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC
Q 016993 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q~~~~~ 336 (379)
..|.|||+|.+..+|..|.+.+...
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4689999999999999999877654
No 285
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=66.73 E-value=1.6 Score=33.34 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.1
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~ 335 (379)
+..|.|||+|.+..+|..|.+.+..
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 4578999999999999999886543
No 286
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.25 E-value=47 Score=24.85 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=20.1
Q ss_pred cccCCCcccc------HHHHHHHHHHHHhHHHHHHHHH
Q 016993 275 FLGLLGKRVD------AIEYYNEKIKEIIPKLEAEQKI 306 (379)
Q Consensus 275 ~~~~~g~~vd------~i~~~~~~l~~l~~~i~~~~~~ 306 (379)
.|++||..++ .++.+..+++.+..++...++.
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887655 3566666666666666655443
No 287
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.68 E-value=11 Score=29.35 Aligned_cols=36 Identities=3% Similarity=-0.002 Sum_probs=28.3
Q ss_pred CcceE--EEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 188 QQFAV--LVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 188 ~~~TV--lV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
.+.++ .|.|+|..+. ++.|.+.|+++ |.|.+|.+..
T Consensus 22 ps~vl~l~V~NL~~~vt----~~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPIT----VDVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp CCSEEEEEEESCCSCCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCcEEEEEEcCcCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 34554 5899998875 78999999987 6799998864
No 288
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=61.36 E-value=10 Score=29.78 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeec
Q 016993 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (379)
Q Consensus 191 TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d 230 (379)
.|.|.|+|..++ ++.|.+.|+++ |.|.+|.+..+
T Consensus 30 ~I~V~NL~~~vt----e~~L~~lFs~y--G~V~~V~i~~~ 63 (130)
T 3zzy_A 30 RIIVENLFYPVT----LDVLHQIFSKF--GTVLKIITFTK 63 (130)
T ss_dssp EEEEESCCSCCC----HHHHHHHHTTS--SCEEEEEEEEE
T ss_pred EEEECCCCCCCC----HHHHHHHHhCc--CCEEEEEEEcC
Confidence 456999998775 78999999987 67999988764
No 289
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=60.57 E-value=7.2 Score=30.70 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (379)
....+|.|.|||.++. ++.|+++|+++.
T Consensus 43 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~G 70 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQ----EKDLKYIFGRYV 70 (143)
T ss_dssp SCCSEEEEEEECTTCC----HHHHHHHHGGGC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhC
Confidence 4578999999999875 899999999874
No 290
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=57.44 E-value=5.9 Score=34.34 Aligned_cols=37 Identities=19% Similarity=0.063 Sum_probs=26.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP 347 (379)
+..|.|||+|.+..+|..|.+.+.... -..+.|..|-
T Consensus 110 ~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 110 QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 456899999999999999998655432 2345566553
No 291
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=56.57 E-value=2.1 Score=31.58 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.3
Q ss_pred CcceEEEEeCCHHHHHHHHH
Q 016993 312 QLGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~Q 331 (379)
..|.|||+|.+..+|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 56899999999999999988
No 292
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=56.34 E-value=7.1 Score=32.82 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHh
Q 016993 311 KQLGAALVFFTSRVAAASAAQSL 333 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~ 333 (379)
.+.|.|||+|.+..+|..|.+..
T Consensus 148 ~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 148 AFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCT
T ss_pred CcccEEEEEECCHHHHHHHHHhC
Confidence 35789999999999999998754
No 293
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=55.45 E-value=11 Score=32.02 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=28.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCC
Q 016993 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (379)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~AP~ 348 (379)
+..|.+||.|.+..+|..|.+.+.... .....+..+|+
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 346899999999999999999887652 23455666663
No 294
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=54.67 E-value=33 Score=20.69 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=16.0
Q ss_pred cccHHHHHHHHHHHHhHHHH
Q 016993 282 RVDAIEYYNEKIKEIIPKLE 301 (379)
Q Consensus 282 ~vd~i~~~~~~l~~l~~~i~ 301 (379)
+.|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45778899998888888775
No 295
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.86 E-value=21 Score=25.68 Aligned_cols=34 Identities=6% Similarity=-0.077 Sum_probs=26.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|+ ++ + ++.|+++|+++ |.|.+|.+.
T Consensus 13 ~~~~~l~V~n~--~~-t---~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DM-T---PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SC-C---HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CC-C---HHHHHHHHhhC--CCEEEEEec
Confidence 45689999995 33 3 89999999987 568888774
No 296
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=49.92 E-value=11 Score=34.95 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhhc
Q 016993 314 GAALVFFTSRVAAASAAQSLHA 335 (379)
Q Consensus 314 ~~aFVtF~s~~~A~~a~Q~~~~ 335 (379)
|.|||+|.+..+|+.|.+.+..
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999987654
No 297
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.80 E-value=14 Score=28.63 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=32.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
+.-..|.|.|+|.+..+ .+.|++.|+++ |.|..|.+..|-
T Consensus 16 ~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~ 55 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGA 55 (121)
T ss_dssp CCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTC
T ss_pred cCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCC
Confidence 56678999999998445 89999999985 578888877754
No 298
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.61 E-value=9.4 Score=28.00 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=21.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC
Q 016993 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA 346 (379)
Q Consensus 314 ~~aFVtF~s~~~A~~a~Q~~~~~~--~~~~~v~~A 346 (379)
+.+||||++..+|..|.+ +.... -...+|.+|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 448999999999999988 43322 223455554
No 299
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.24 E-value=36 Score=25.51 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=31.6
Q ss_pred cceEEEecCCCCC-CCCChHHHHHHHHHhhCCC-------cceEEEEeecCch
Q 016993 189 QFAVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNKE 233 (379)
Q Consensus 189 ~~TVlV~~IP~~~-~~~~~~~~L~~~f~~~~p~-------~v~~v~i~~d~~~ 233 (379)
..|+.++|+|.++ .+++.++.+++.|..+.|. +..+|.+.++..+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
Confidence 4789999999877 4344457788888877554 4567877775543
No 300
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.00 E-value=29 Score=26.05 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=26.9
Q ss_pred ceEEEEeCCHHHHHHHHHH-hhcCCCCCeEEeeCC--CCCCeeeCCC
Q 016993 314 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDAP--ESRELIWNNL 357 (379)
Q Consensus 314 ~~aFVtF~s~~~A~~a~Q~-~~~~~~~~~~v~~AP--~P~DI~W~Nl 357 (379)
+.|.|||.+...|+.+.+. -+.-+.....|.+.| +|.-+.-.+|
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl 94 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGL 94 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecC
Confidence 8999999999999888765 222233444554433 3444444444
No 301
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.79 E-value=17 Score=26.81 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.8
Q ss_pred cceEEEEeCCHHHHHHHHH
Q 016993 313 LGAALVFFTSRVAAASAAQ 331 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q 331 (379)
.+.+||||.+..+|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
Confidence 4449999999999999998
No 302
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=39.45 E-value=42 Score=20.43 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016993 4 DSFLTSLGTSFIIFVVLMCLFAWLSS 29 (379)
Q Consensus 4 ~~~~~~l~~~~~~~~~~l~lF~~lR~ 29 (379)
.++....+-.+++-++.-++|+.+|+
T Consensus 20 ~si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 20 KAIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555666666778999986
No 303
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.46 E-value=1.2e+02 Score=22.47 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCCccccccccCCCccccHHHHHHHHHHHHhHHHHHHHHHh
Q 016993 232 KEANKIYEELEGYKKKLARAEAVYAESK--SAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKIT 307 (379)
Q Consensus 232 ~~l~~l~~~r~~~~~~LE~~~~~~~~~k--~~~~~~~~rp~~r~~~~~~~g~~vd~i~~~~~~l~~l~~~i~~~~~~~ 307 (379)
.++..|..+++++.++++....++...- +...+.+.+..| + .-.+-..+.+-.++++++|..+++..|..+
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH---~--~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH---M--SLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE---E--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee---e--cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778777777766664311 111222211111 0 001222344455677888888888888775
No 304
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=36.78 E-value=41 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhh
Q 016993 313 LGAALVFFTSRVAAASAAQSLH 334 (379)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~Q~~~ 334 (379)
-.+|||+|+++..|..|..++.
T Consensus 49 DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 49 DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEecCHHHHHHHHHhcc
Confidence 5699999999999999988764
No 305
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.30 E-value=65 Score=20.01 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCC
Q 016993 17 FVVLMCLFAWLSSKP 31 (379)
Q Consensus 17 ~~~~l~lF~~lR~~~ 31 (379)
.++.++.|.++|+|.
T Consensus 24 ~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhh
Confidence 344566688888763
No 306
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=31.93 E-value=44 Score=25.35 Aligned_cols=34 Identities=6% Similarity=-0.077 Sum_probs=26.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcceEEEEe
Q 016993 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~~L~~~f~~~~p~~v~~v~i~ 228 (379)
...++|.|.|+ ++ + ++.|+++|+++ |.|.+|.+.
T Consensus 37 ~~~~~lfVgnl--~~-t---e~~L~~~F~~~--G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DM-T---PTLLRGAFSPF--GNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SC-C---HHHHHHHHSTT--CCCSCEEEE
T ss_pred CCCCEEEEcCC--CC-C---HHHHHHHHHcc--CCEEEEEEe
Confidence 45789999995 23 3 89999999987 567777765
No 307
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.53 E-value=36 Score=21.17 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCC
Q 016993 17 FVVLMCLFAWLSSKP 31 (379)
Q Consensus 17 ~~~~l~lF~~lR~~~ 31 (379)
.++.++.|.++|+|.
T Consensus 25 ~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 25 LVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhH
Confidence 344566688888763
No 308
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.81 E-value=1.5e+02 Score=21.58 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=28.6
Q ss_pred CCcceEEEecCCCCC---CCCChHHHHHHHHHhhCCCcceEEEEee
Q 016993 187 PQQFAVLVRDLPDLP---KGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (379)
Q Consensus 187 ~~~~TVlV~~IP~~~---~~~~~~~~L~~~f~~~~p~~v~~v~i~~ 229 (379)
...+.+.|+-.++.- .....++.|+++|+++ |.|.+|.++.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~ 51 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSS 51 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEES
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEcc
Confidence 456788888766421 1112389999999987 5798988873
No 309
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.83 E-value=63 Score=20.09 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhcC
Q 016993 16 IFVVLMCLFAWLSSK 30 (379)
Q Consensus 16 ~~~~~l~lF~~lR~~ 30 (379)
+.++.+.+|.++|+|
T Consensus 24 ~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 24 VVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheehh
Confidence 334445557778776
No 310
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.64 E-value=73 Score=23.17 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=29.3
Q ss_pred CCCcceEEEecCCCCC----CCCChHHHHHHHHHhhCCCcceEEEEeecC
Q 016993 186 RPQQFAVLVRDLPDLP----KGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (379)
Q Consensus 186 ~~~~~TVlV~~IP~~~----~~~~~~~~L~~~f~~~~p~~v~~v~i~~d~ 231 (379)
.|.+=||+|...|..- -++..-..|.+.|.++ |.|..+.++.|-
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 3778999999988421 1111125677888775 578888877765
No 311
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=23.93 E-value=22 Score=19.18 Aligned_cols=6 Identities=33% Similarity=1.431 Sum_probs=3.6
Q ss_pred CeeeCC
Q 016993 351 ELIWNN 356 (379)
Q Consensus 351 DI~W~N 356 (379)
||+|-|
T Consensus 18 DiIWvn 23 (26)
T 2ldf_A 18 DVIWDE 23 (26)
T ss_dssp TCCCSC
T ss_pred cEEEeC
Confidence 566655
No 312
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.77 E-value=1.8e+02 Score=22.14 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHH
Q 016993 284 DAIEYYNEKIKEIIPKLEAEQKI 306 (379)
Q Consensus 284 d~i~~~~~~l~~l~~~i~~~~~~ 306 (379)
+.|.-+++|++.|+.+|+..+..
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999888876654
No 313
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.64 E-value=97 Score=16.43 Aligned_cols=6 Identities=50% Similarity=1.204 Sum_probs=3.3
Q ss_pred ccHHHH
Q 016993 283 VDAIEY 288 (379)
Q Consensus 283 vd~i~~ 288 (379)
+|++++
T Consensus 2 idalef 7 (28)
T 3ra3_A 2 IDALEF 7 (28)
T ss_dssp CCHHHH
T ss_pred cchHHh
Confidence 466554
No 314
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=21.38 E-value=21 Score=19.25 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=3.3
Q ss_pred CCeeeCCC
Q 016993 350 RELIWNNL 357 (379)
Q Consensus 350 ~DI~W~Nl 357 (379)
-||+|-|-
T Consensus 17 ldiIWvnt 24 (26)
T 1edn_A 17 LDIIWXXX 24 (26)
T ss_dssp TTSCC---
T ss_pred ccEEEeec
Confidence 37777663
No 315
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=21.20 E-value=23 Score=19.17 Aligned_cols=7 Identities=43% Similarity=1.284 Sum_probs=4.5
Q ss_pred CCeeeCC
Q 016993 350 RELIWNN 356 (379)
Q Consensus 350 ~DI~W~N 356 (379)
-||||-|
T Consensus 17 lDiIWvn 23 (26)
T 2lde_A 17 KDVIWVN 23 (26)
T ss_dssp TTCSTTT
T ss_pred ccEEEec
Confidence 3677766
No 316
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.12 E-value=1.3e+02 Score=17.92 Aligned_cols=14 Identities=14% Similarity=-0.045 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhcC
Q 016993 17 FVVLMCLFAWLSSK 30 (379)
Q Consensus 17 ~~~~l~lF~~lR~~ 30 (379)
.++..++|.+.|||
T Consensus 25 ~li~~l~~~~~rrr 38 (38)
T 2k1k_A 25 ALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHeecC
Confidence 33444445556553
No 317
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=20.32 E-value=24 Score=19.07 Aligned_cols=6 Identities=33% Similarity=1.226 Sum_probs=2.8
Q ss_pred CeeeCC
Q 016993 351 ELIWNN 356 (379)
Q Consensus 351 DI~W~N 356 (379)
||+|-|
T Consensus 18 DiIWvn 23 (26)
T 1srb_A 18 DVIWXX 23 (26)
T ss_dssp CCCC--
T ss_pred cEEEee
Confidence 667765
Done!