Query 016995
Match_columns 379
No_of_seqs 217 out of 345
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.6 0.00029 9.8E-09 69.0 10.8 161 87-269 6-172 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.4 0.00045 1.5E-08 65.7 8.4 162 86-269 5-173 (263)
3 1g9r_A Glycosyl transferase; a 96.6 0.0028 9.5E-08 60.9 6.3 168 88-268 3-196 (311)
4 3tzt_A Glycosyl transferase fa 96.4 0.014 4.9E-07 55.2 9.7 179 88-285 8-210 (276)
5 3p9x_A Phosphoribosylglycinami 39.4 1.7E+02 0.0058 26.3 9.7 71 100-189 13-87 (211)
6 4ds3_A Phosphoribosylglycinami 31.6 2.2E+02 0.0074 25.5 9.0 72 100-189 18-92 (209)
7 3l9k_W Dynein intermediate cha 29.6 24 0.00083 23.7 1.6 32 157-188 7-38 (38)
8 1jkx_A GART;, phosphoribosylgl 29.1 2.9E+02 0.01 24.5 9.5 72 100-189 11-85 (212)
9 1meo_A Phosophoribosylglycinam 25.8 3.5E+02 0.012 23.9 10.0 72 100-189 11-85 (209)
10 3tqr_A Phosphoribosylglycinami 23.9 3.9E+02 0.013 23.9 9.3 71 100-189 16-89 (215)
11 1o7q_A N-acetyllactosaminide a 23.2 2.7E+02 0.0093 26.5 8.3 177 85-289 48-260 (289)
12 3kcq_A Phosphoribosylglycinami 20.4 4.4E+02 0.015 23.5 8.9 68 100-189 19-88 (215)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.60 E-value=0.00029 Score=69.01 Aligned_cols=161 Identities=18% Similarity=0.126 Sum_probs=90.8
Q ss_pred EEEEEccccccCCcchHHHHHHHhh-hcCCCccccccEEEEEcC---HHHHHHhhhcCCcEEEecCCCCCCCccccccCC
Q 016995 87 VIITTLNQAWAEPNSIFDIFLESFR-TGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALNTSGLDFSGKEAYFMT 162 (379)
Q Consensus 87 VIlT~~N~a~a~p~s~ldlfLeS~r-~G~~t~~ll~~llVvAlD---~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s 162 (379)
-|+.++|..|.. -+-..+.|++ .+ +. ..++|+..| ++..+.+++.+.....++.-......+-..+..
T Consensus 6 ~vt~~~d~~Yl~---~a~vl~~SL~~~~--s~---~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~ 77 (333)
T 1ll2_A 6 FVTLTTNDAYAK---GALVLGSSLKQHR--TS---RRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKR 77 (333)
T ss_dssp EEEEESSHHHHH---HHHHHHHHHHHTT--CC---SEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHC
T ss_pred EEEEEeCHHHHH---HHHHHHHHHHHhC--CC---CCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccc
Confidence 344456888753 2344567876 33 21 334445443 566677777765544443211111110000011
Q ss_pred HHHHHHHHHHHHHHHHHHHcCceEEEecCccEEEccCCcccCCCCCCeEEeccCCCCCCCCCCCCCceeEEEEEeChhHH
Q 016995 163 SSYLEMMWIRIRLLSDVLAMGYNFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSNNRTI 242 (379)
Q Consensus 163 ~~yl~mmw~K~~~l~~vL~lGy~vLfs~DvDVVWlRNPf~~~~~~aDi~issD~~~g~~~d~~~~~NtGf~yvRst~rTi 242 (379)
. +...+|.|+.+.. +.+.. .|||. |+|++.++|+-+.|..+ .+....|. | .....|+|++.++++..+-
T Consensus 78 ~-~~~~t~~Kl~i~~-l~~yd-rvlYL-DaD~lv~~di~eLf~~~-~~aAv~d~--~----~~~~fNsGvmlin~~~~~~ 146 (333)
T 1ll2_A 78 P-ELGVTLTKLHCWS-LTQYS-KCVFM-DADTLVLANIDDLFERE-ELSAAPDP--G----WPDCFNSGVFVYQPSVETY 146 (333)
T ss_dssp G-GGHHHHHHGGGGG-CTTCS-EEEEE-CTTEEECSCCGGGGGSC-SSEEEECS--S----STTSEEEEEEEECCCHHHH
T ss_pred c-chHHHHHHHHHhH-hcCCC-eEEEE-eCCEEeccCHHHHhCCC-ceeEEecC--C----CCcceeeeEEEEeCCHHHH
Confidence 1 2346778877665 22222 59999 99999999998887654 34444442 1 1357999999999985543
Q ss_pred HHHHHHHHHHHcC--CCCCchHHHHHHHc
Q 016995 243 EFYKFWYNSRKMF--PGLHDQDVLNEIKF 269 (379)
Q Consensus 243 ~f~~~W~~~r~~~--pg~~DQ~vfN~il~ 269 (379)
+.+.+..... -...||++||.+..
T Consensus 147 ---~~l~~~~~~~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 147 ---NQLLHVASEQGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp ---HHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred ---HHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 3333222211 23579999999883
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.36 E-value=0.00045 Score=65.71 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=91.9
Q ss_pred eEEEEE-ccccccCCcchHHHHHHHhh-hcCCCccccccEEEEE--cCHHHHHHhhhcCCcEEEecCCCCCCCcc--ccc
Q 016995 86 TVIITT-LNQAWAEPNSIFDIFLESFR-TGNGTGKLLDHLVVVA--LDSKALDHCLSTHPHCYALNTSGLDFSGK--EAY 159 (379)
Q Consensus 86 tVIlT~-~N~a~a~p~s~ldlfLeS~r-~G~~t~~ll~~llVvA--lD~~a~~~C~~~~~~cy~~~~~g~d~~~~--~~~ 159 (379)
...+|. +|.+|.. -+-..+.|+| .| +. .+-++++. +.++..+.+++.+.....++ ..+.... ...
T Consensus 5 ~AyvTl~td~~Yl~---ga~vL~~SL~~~~--s~--~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~--~l~~~~~~~~~~ 75 (263)
T 3u2u_A 5 QAFVTLTTNDAYAK---GALVLGSSLKQHR--TT--RRLVVLATPQVSDSMRKVLETVFDEVIMVD--VLDSGDSAHLTL 75 (263)
T ss_dssp EEEEEEESSHHHHH---HHHHHHHHHHHTT--CC--SEEEEEECTTSCHHHHHHHHHHSSEEEECC--CCCCCCHHHHHH
T ss_pred eEEEEEEECHHHHH---HHHHHHHHHHHhC--CC--CCEEEEecCCCCHHHHHHHHHcCCeEEEee--ecCCcchhhhhh
Confidence 344444 5776643 2344667886 33 21 33333333 45677788888776554443 1221110 001
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHcCc-eEEEecCccEEEccCCcccCCCCCCeEEeccCCCCCCCCCCCCCceeEEEEEeC
Q 016995 160 FMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTQDADIVWLQNPFQRFDPDADFQIACDRFSGNSFNLRNEPNGGFNYVKSN 238 (379)
Q Consensus 160 f~s~~yl~mmw~K~~~l~~vL~lGy-~vLfs~DvDVVWlRNPf~~~~~~aDi~issD~~~g~~~d~~~~~NtGf~yvRst 238 (379)
+..+.+ ..+|.|+.+.. ++ .| .||+. |+|++.++|.-+.|..+ .+....|. | ....+|+|++.+.++
T Consensus 76 ~~rp~~-~~~~~kl~~~~-l~--~~~~vlyl-D~D~~v~~~~~~Lf~~~-~~aA~~d~--~----~~~~fNsGv~li~p~ 143 (263)
T 3u2u_A 76 MKRPEL-GVTLTKLHCWS-LT--QYSKCVFM-DADTLVLANIDDLFDRE-ELSAAPDP--G----WPDCFNSGVFVYQPS 143 (263)
T ss_dssp TTCTTG-GGGGGGGGGGG-CT--TCSEEEEE-CTTEEECSCCGGGGGSC-SSEEEECT--T----STTSEEEEEEEECCC
T ss_pred hcCcch-hHHhHHHHhcc-cc--CcceEEEE-cCCEeeccCHHHHhCCC-cceEeccC--C----CCccccCeEEEEccc
Confidence 111111 24556766554 22 35 59999 99999999988877655 35555553 1 135689999999998
Q ss_pred hhHHHHHHHHHHHHHcCCCCCchHHHHHHHc
Q 016995 239 NRTIEFYKFWYNSRKMFPGLHDQDVLNEIKF 269 (379)
Q Consensus 239 ~rTi~f~~~W~~~r~~~pg~~DQ~vfN~il~ 269 (379)
..+-+-+-+..... ..-...||++||.+..
T Consensus 144 ~~~~~~l~~~~~~~-~~~~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 144 VETYNQLLHLASEQ-GSFDGGDQGILNTFFS 173 (263)
T ss_dssp HHHHHHHHHHHHHH-CCTTSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc-CCCCcccHHHHHHHhc
Confidence 65544333333322 2234589999999983
No 3
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.57 E-value=0.0028 Score=60.86 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=88.9
Q ss_pred EEEEccccccCCcchHHHHHHHh-hhcCCCccccccEEEEEcC--HHHHHHhhhc----CCcEEEecCCCCCCCcc-c-c
Q 016995 88 IITTLNQAWAEPNSIFDIFLESF-RTGNGTGKLLDHLVVVALD--SKALDHCLST----HPHCYALNTSGLDFSGK-E-A 158 (379)
Q Consensus 88 IlT~~N~a~a~p~s~ldlfLeS~-r~G~~t~~ll~~llVvAlD--~~a~~~C~~~----~~~cy~~~~~g~d~~~~-~-~ 158 (379)
|+.++|..|.. .+-..+.|+ ... +..-+ ++.|++.| ++..+.+++. +............+..- . .
T Consensus 3 I~~~~d~~Y~~---~~~vli~Sl~l~~--~~~~~-~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 76 (311)
T 1g9r_A 3 IVFAADDNYAA---YLCVAAKSVEAAH--PDTEI-RFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNI 76 (311)
T ss_dssp EEEEECGGGHH---HHHHHHHHHHHTC--TTSCC-EEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCC
T ss_pred EEEECCHhHHH---HHHHHHHHHHHHc--CCCCc-eEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCcccc
Confidence 55667888854 455677888 322 21112 34455544 5655555554 43333222221112110 0 1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCc-eEEEecCccEEEccCCcccCCC---CCCeEEeccCCCC-CC--------CCCC
Q 016995 159 YFMTSSYLEMMWIRIRLLSDVLAMGY-NFVFTQDADIVWLQNPFQRFDP---DADFQIACDRFSG-NS--------FNLR 225 (379)
Q Consensus 159 ~f~s~~yl~mmw~K~~~l~~vL~lGy-~vLfs~DvDVVWlRNPf~~~~~---~aDi~issD~~~g-~~--------~d~~ 225 (379)
.+-+ ..++.|+.+ -++|. .| .||+. |+|++-++|.-+.+.. +.-+....|.+.. .+ ....
T Consensus 77 ~~~s----~~~y~Rl~l-~~ll~-~~~kvlyL-D~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~ 149 (311)
T 1g9r_A 77 RHIS----ITTYARLKL-GEYIA-DCDKVLYL-DIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGE 149 (311)
T ss_dssp TTCC----GGGGGGGGH-HHHCC-SCSCEEEE-CSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTS
T ss_pred ccCC----HHHHHHHHH-HHHhh-hcCEEEEE-cCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCC
Confidence 1111 123335543 44443 33 59999 9999999998776653 3345555554321 00 0123
Q ss_pred CCCceeEEEEEeCh----hHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 016995 226 NEPNGGFNYVKSNN----RTIEFYKFWYNSRKMFPGLHDQDVLNEIK 268 (379)
Q Consensus 226 ~~~NtGf~yvRst~----rTi~f~~~W~~~r~~~pg~~DQ~vfN~il 268 (379)
...|+|++.+..+. ...+-+..|.......-...||++||.+.
T Consensus 150 ~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f 196 (311)
T 1g9r_A 150 YYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLF 196 (311)
T ss_dssp CCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHH
T ss_pred ceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHH
Confidence 46999999998763 22233444554332223468999999988
No 4
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=96.35 E-value=0.014 Score=55.18 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=83.9
Q ss_pred EEEEccccccCCcchHHHHHHHhh-hcCCCccccccEEEEEc--CHHHHHHhhh----cCCcEEEecCCCCCCCcccccc
Q 016995 88 IITTLNQAWAEPNSIFDIFLESFR-TGNGTGKLLDHLVVVAL--DSKALDHCLS----THPHCYALNTSGLDFSGKEAYF 160 (379)
Q Consensus 88 IlT~~N~a~a~p~s~ldlfLeS~r-~G~~t~~ll~~llVvAl--D~~a~~~C~~----~~~~cy~~~~~g~d~~~~~~~f 160 (379)
|+.++|..|.. .+-.-+.|+. .+.. .. + ++.|+.- .++..+.+++ .+............+.+ .-
T Consensus 8 I~~~~d~~Y~~---~~~v~i~Sl~~~~~~-~~-~-~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~---~~ 78 (276)
T 3tzt_A 8 LLLTLDENYIP---QMKVLMTSIYINNPG-RI-F-DVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSF---AK 78 (276)
T ss_dssp EEEECCGGGHH---HHHHHHHHHHHHSTT-CC-E-EEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-----------
T ss_pred EEEEeCHhHHH---HHHHHHHHHHHhCCC-Cc-e-EEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhc---Cc
Confidence 56788888864 4555667774 4311 11 1 2333433 3444444333 23222222221111221 00
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCc-eEEEecCccEEEccCCcccCCC---CCCeEEeccCCCCCC---------CCCCCC
Q 016995 161 MTSSYLEMMWIRIRLLSDVLAMGY-NFVFTQDADIVWLQNPFQRFDP---DADFQIACDRFSGNS---------FNLRNE 227 (379)
Q Consensus 161 ~s~~yl~mmw~K~~~l~~vL~lGy-~vLfs~DvDVVWlRNPf~~~~~---~aDi~issD~~~g~~---------~d~~~~ 227 (379)
.+..|..+++.|+.+ -+++...| .+|+. |+|++.++|.-+.+.. +.-+....|+..... ......
T Consensus 79 ~~~~~s~~~~~rl~~-~~l~p~~~~kvlyl-D~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~y 156 (276)
T 3tzt_A 79 VTDRYPKEMYYRLLA-GEFLPENLGEILYL-DPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDY 156 (276)
T ss_dssp -----CHHHHHHHTH-HHHSCTTCCEEEEE-CSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------C
T ss_pred cccccCHHHHHHHHH-HHHcccccCeEEEE-eCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCe
Confidence 122334455556543 33443333 69999 9999999999877753 234555566533210 011267
Q ss_pred CceeEEEEEeCh----hHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCccCcceEEEEcCc
Q 016995 228 PNGGFNYVKSNN----RTIEFYKFWYNSRKMFPGLHDQDVLNEIKFDPYIQKIQVKIRFLDT 285 (379)
Q Consensus 228 ~NtGf~yvRst~----rTi~f~~~W~~~r~~~pg~~DQ~vfN~il~~~~~~~~gl~v~~Ld~ 285 (379)
.|+|++.+..+. ...+-+..|.......-...||++||.+.. + ++..||.
T Consensus 157 fNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~-~-------~~~~Lp~ 210 (276)
T 3tzt_A 157 YNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILNAMYG-D-------RIYPLDD 210 (276)
T ss_dssp EEEEEEEEEHHHHHHHCCHHHHHHHHHHC--------CHHHHHHHG-G-------GEEEEEH
T ss_pred EEeeEEEEEHHHHHhhhHHHHHHHHHHhccccccCCChhHHHHHHh-C-------CEEECCc
Confidence 999999998764 112222233332211123689999999983 1 3667775
No 5
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=39.42 E-value=1.7e+02 Score=26.29 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=45.2
Q ss_pred cchHHHHHHHhhhcCCCccccccEEEEEcC---HHHHHHhhhcCCcEEEecCCCCCCCccccccCCH-HHHHHHHHHHHH
Q 016995 100 NSIFDIFLESFRTGNGTGKLLDHLVVVALD---SKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTS-SYLEMMWIRIRL 175 (379)
Q Consensus 100 ~s~ldlfLeS~r~G~~t~~ll~~llVvAlD---~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~-~yl~mmw~K~~~ 175 (379)
|+-|...++..+.|+- --.++.|..| ....++|++.|++++.++.. .|.++ +|- ..+
T Consensus 13 Gsnl~ali~~~~~~~l----~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~---------~~~~r~~~d------~~~ 73 (211)
T 3p9x_A 13 GTNAEAIIQSQKAGQL----PCEVALLITDKPGAKVVERVKVHEIPVCALDPK---------TYPSKEAYE------IEV 73 (211)
T ss_dssp CHHHHHHHHHHHTTCC----SSEEEEEEESCSSSHHHHHHHTTTCCEEECCGG---------GSSSHHHHH------HHH
T ss_pred chHHHHHHHHHHcCCC----CcEEEEEEECCCCcHHHHHHHHcCCCEEEeChh---------hcCchhhhH------HHH
Confidence 5778888988887732 1234434334 45679999999999886532 22222 222 355
Q ss_pred HHHHHHcCceEEEe
Q 016995 176 LSDVLAMGYNFVFT 189 (379)
Q Consensus 176 l~~vL~lGy~vLfs 189 (379)
+..+-+.+.|++++
T Consensus 74 ~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 74 VQQLKEKQIDFVVL 87 (211)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHhcCCCEEEE
Confidence 66666788888777
No 6
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=31.55 E-value=2.2e+02 Score=25.48 Aligned_cols=72 Identities=7% Similarity=0.048 Sum_probs=45.1
Q ss_pred cchHHHHHHHhhhcCCCccccccEEEEEc--CHHHHHHhhhcCCcEEEecCCCCCCCccccccCCH-HHHHHHHHHHHHH
Q 016995 100 NSIFDIFLESFRTGNGTGKLLDHLVVVAL--DSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTS-SYLEMMWIRIRLL 176 (379)
Q Consensus 100 ~s~ldlfLeS~r~G~~t~~ll~~llVvAl--D~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~-~yl~mmw~K~~~l 176 (379)
|+.+...++.++.|+- -.+=.+|++- |....++|++.|++++..+. ..|.++ .|. -.++
T Consensus 18 gsnl~all~~~~~~~l---~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~---------~~~~~r~~~d------~~~~ 79 (209)
T 4ds3_A 18 GSNMEALIRAAQAPGF---PAEIVAVFSDKAEAGGLAKAEAAGIATQVFKR---------KDFASKEAHE------DAIL 79 (209)
T ss_dssp CHHHHHHHHHHTSTTC---SEEEEEEEESCTTCTHHHHHHHTTCCEEECCG---------GGSSSHHHHH------HHHH
T ss_pred cHHHHHHHHHHHcCCC---CcEEEEEEECCcccHHHHHHHHcCCCEEEeCc---------cccCCHHHHH------HHHH
Confidence 5678888888876621 1222445552 34557899999999998652 223332 222 3556
Q ss_pred HHHHHcCceEEEe
Q 016995 177 SDVLAMGYNFVFT 189 (379)
Q Consensus 177 ~~vL~lGy~vLfs 189 (379)
..+-+.+.|++++
T Consensus 80 ~~l~~~~~Dliv~ 92 (209)
T 4ds3_A 80 AALDVLKPDIICL 92 (209)
T ss_dssp HHHHHHCCSEEEE
T ss_pred HHHHhcCCCEEEE
Confidence 6667788888877
No 7
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=29.64 E-value=24 Score=23.66 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=27.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCceEEE
Q 016995 157 EAYFMTSSYLEMMWIRIRLLSDVLAMGYNFVF 188 (379)
Q Consensus 157 ~~~f~s~~yl~mmw~K~~~l~~vL~lGy~vLf 188 (379)
.....|.+|....-+..+++.+.|.-.||+++
T Consensus 7 ~~I~~S~~F~~F~~rsskviERAL~e~yDi~~ 38 (38)
T 3l9k_W 7 QMIILSENFQRFVVRAGRVIERALSENVDIYT 38 (38)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHcccccccC
Confidence 35678899999999999999999999998653
No 8
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=29.09 E-value=2.9e+02 Score=24.47 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=42.8
Q ss_pred cchHHHHHHHhhhcCCCccccccEEEEEc--CHHHHHHhhhcCCcEEEecCCCCCCCccccccCCH-HHHHHHHHHHHHH
Q 016995 100 NSIFDIFLESFRTGNGTGKLLDHLVVVAL--DSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTS-SYLEMMWIRIRLL 176 (379)
Q Consensus 100 ~s~ldlfLeS~r~G~~t~~ll~~llVvAl--D~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~-~yl~mmw~K~~~l 176 (379)
|+.+...++.++.|+. ..+=..|++- |....++|++.|++++..+. ..|.++ .|- -.++
T Consensus 11 gsnl~ali~~~~~~~~---~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~---------~~~~~r~~~~------~~~~ 72 (212)
T 1jkx_A 11 GSNLQAIIDACKTNKI---KGTVRAVFSNKADAFGLERARQAGIATHTLIA---------SAFDSREAYD------RELI 72 (212)
T ss_dssp CHHHHHHHHHHHTTSS---SSEEEEEEESCTTCHHHHHHHHTTCEEEECCG---------GGCSSHHHHH------HHHH
T ss_pred cHHHHHHHHHHHcCCC---CceEEEEEeCCCchHHHHHHHHcCCcEEEeCc---------ccccchhhcc------HHHH
Confidence 4678888888877631 1222344543 34567999999999988642 122222 222 2345
Q ss_pred HHHHHcCceEEEe
Q 016995 177 SDVLAMGYNFVFT 189 (379)
Q Consensus 177 ~~vL~lGy~vLfs 189 (379)
..+-+.+.|++++
T Consensus 73 ~~l~~~~~Dliv~ 85 (212)
T 1jkx_A 73 HEIDMYAPDVVVL 85 (212)
T ss_dssp HHHGGGCCSEEEE
T ss_pred HHHHhcCCCEEEE
Confidence 5556677777777
No 9
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.77 E-value=3.5e+02 Score=23.95 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=42.3
Q ss_pred cchHHHHHHHhhhcCCCccccccEEEEEcC--HHHHHHhhhcCCcEEEecCCCCCCCccccccCCH-HHHHHHHHHHHHH
Q 016995 100 NSIFDIFLESFRTGNGTGKLLDHLVVVALD--SKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTS-SYLEMMWIRIRLL 176 (379)
Q Consensus 100 ~s~ldlfLeS~r~G~~t~~ll~~llVvAlD--~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~-~yl~mmw~K~~~l 176 (379)
|+.|...++.++.|+. ..+=.+|++-- ....++|++.|++++.++.. .|.++ +|. -.++
T Consensus 11 Gs~L~aLi~~~~~~~~---~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~---------~~~~r~~~~------~~~~ 72 (209)
T 1meo_A 11 GSNLQALIDSTREPNS---SAQIDIVISNKAAVAGLDKAERAGIPTRVINHK---------LYKNRVEFD------SAID 72 (209)
T ss_dssp CTTHHHHHHHHHSTTC---SCEEEEEEESSTTCHHHHHHHHTTCCEEECCGG---------GSSSHHHHH------HHHH
T ss_pred chHHHHHHHHHhcCCC---CcEEEEEEeCCCChHHHHHHHHcCCCEEEECcc---------ccCchhhhh------HHHH
Confidence 4678888888887631 12223344432 34678899999999876521 22222 222 2345
Q ss_pred HHHHHcCceEEEe
Q 016995 177 SDVLAMGYNFVFT 189 (379)
Q Consensus 177 ~~vL~lGy~vLfs 189 (379)
..+-+.+.|++++
T Consensus 73 ~~l~~~~~Dliv~ 85 (209)
T 1meo_A 73 LVLEEFSIDIVCL 85 (209)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHhcCCCEEEE
Confidence 5556677777776
No 10
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=23.92 E-value=3.9e+02 Score=23.86 Aligned_cols=71 Identities=8% Similarity=0.128 Sum_probs=44.1
Q ss_pred cchHHHHHHHhhhcCCCccccccEEEEE--cCHHHHHHhhhcCCcEEEecCCCCCCCccccccCCH-HHHHHHHHHHHHH
Q 016995 100 NSIFDIFLESFRTGNGTGKLLDHLVVVA--LDSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTS-SYLEMMWIRIRLL 176 (379)
Q Consensus 100 ~s~ldlfLeS~r~G~~t~~ll~~llVvA--lD~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~-~yl~mmw~K~~~l 176 (379)
|+.+...++.++.| - ..+=.+|++ -|....+++++.|++++.++.. .|.++ .|- -.++
T Consensus 16 Gsnl~all~~~~~~-~---~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~---------~~~~r~~~d------~~~~ 76 (215)
T 3tqr_A 16 GTNLQAIIGAIQKG-L---AIEIRAVISNRADAYGLKRAQQADIPTHIIPHE---------EFPSRTDFE------STLQ 76 (215)
T ss_dssp CHHHHHHHHHHHTT-C---SEEEEEEEESCTTCHHHHHHHHTTCCEEECCGG---------GSSSHHHHH------HHHH
T ss_pred cHHHHHHHHHHHcC-C---CCEEEEEEeCCcchHHHHHHHHcCCCEEEeCcc---------ccCchhHhH------HHHH
Confidence 57888888888765 1 123344555 2444578999999999987521 22222 221 2455
Q ss_pred HHHHHcCceEEEe
Q 016995 177 SDVLAMGYNFVFT 189 (379)
Q Consensus 177 ~~vL~lGy~vLfs 189 (379)
..+-+.+.|++++
T Consensus 77 ~~l~~~~~Dliv~ 89 (215)
T 3tqr_A 77 KTIDHYDPKLIVL 89 (215)
T ss_dssp HHHHTTCCSEEEE
T ss_pred HHHHhcCCCEEEE
Confidence 6666778777777
No 11
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=23.19 E-value=2.7e+02 Score=26.47 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=88.0
Q ss_pred CeEEE-EEccccccCCcchHHHHHHHhh----hcCCCccccccEEEEEcCHHHHHHhhhcCCcE-EEecCCCCCCCcccc
Q 016995 85 NTVII-TTLNQAWAEPNSIFDIFLESFR----TGNGTGKLLDHLVVVALDSKALDHCLSTHPHC-YALNTSGLDFSGKEA 158 (379)
Q Consensus 85 ~tVIl-T~~N~a~a~p~s~ldlfLeS~r----~G~~t~~ll~~llVvAlD~~a~~~C~~~~~~c-y~~~~~g~d~~~~~~ 158 (379)
-||-| .++-..|.+ .+|+.|++|.. .|. --++.|.+-+.+..-. ..+++.- ..+ -.
T Consensus 48 ~tIGl~vfa~GkY~~--~fl~~Fl~SAEk~Fm~g~-----~v~YYVFTD~~~~~p~-v~l~~~r~~~V----------~~ 109 (289)
T 1o7q_A 48 ITVGLTVFAVGRYIE--HYLEEFLTSANKHFMVGH-----PVIFYIMVDDVSRMPL-IELGPLRSFKV----------FK 109 (289)
T ss_dssp CCEEEEEEECTTHHH--HHHHHHHHHHHHHBSTTS-----CEEEEEEESCGGGCCC-CCCCTTEEEEE----------EE
T ss_pred CeEEEEEEEecccHH--HHHHHHHHHHHHhccCCC-----eEEEEEEeCChhhCCc-cccCCCCeEEE----------EE
Confidence 34433 334444541 37899999963 452 2356677666554211 0111110 000 00
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH----HcCceEEEecCccEEEccCCcc-cCCCCCCeEEecc-CCCCC-----CC-----
Q 016995 159 YFMTSSYLEMMWIRIRLLSDVL----AMGYNFVFTQDADIVWLQNPFQ-RFDPDADFQIACD-RFSGN-----SF----- 222 (379)
Q Consensus 159 ~f~s~~yl~mmw~K~~~l~~vL----~lGy~vLfs~DvDVVWlRNPf~-~~~~~aDi~issD-~~~g~-----~~----- 222 (379)
......+...+.+|.+.+.... ...+|+||+-|+|.++.. ++- -+. .|++.+-= +|.+. |+
T Consensus 110 i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~-~vG~E~L--g~lv~~lHp~~y~~~~~~fpYERrp~ 186 (289)
T 1o7q_A 110 IKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQD-KFGVETL--GESVAQLQAWWYKADPNDFTYERRKE 186 (289)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECS-CBCGGGC--SSEEEEECTTTTTSCGGGSCCCCCTT
T ss_pred eccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeec-cCCHHHH--HHHHHccCHHHhCCCCCCCCCCCCcC
Confidence 1112336677777888887765 346888888899999776 432 122 34444322 22221 11
Q ss_pred -------CCCCCCceeEEEEEeChhHHHHHHHHHHHHHc------CCCCCchHHHHHHH-cCCCccCcceEEEEcCcccc
Q 016995 223 -------NLRNEPNGGFNYVKSNNRTIEFYKFWYNSRKM------FPGLHDQDVLNEIK-FDPYIQKIQVKIRFLDTKYI 288 (379)
Q Consensus 223 -------d~~~~~NtGf~yvRst~rTi~f~~~W~~~r~~------~pg~~DQ~vfN~il-~~~~~~~~gl~v~~Ld~~~F 288 (379)
+.+..-=.|=++=-......+|.+.-...... ...-||..=||.-+ .++ .. ++|++.|.
T Consensus 187 S~AyIp~~eGdfYY~Ga~fGGt~~~vl~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf~~~K-----Pt--KvLSPEY~ 259 (289)
T 1o7q_A 187 SAAYIPFGEGDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNK-----PT--KILSPEYC 259 (289)
T ss_dssp STTCCCTTCCSCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHSC-----CS--EEECGGGS
T ss_pred ceeeecCCCCCEEEEceeeCCcHHHHHHHHHHHHHHHHHHHhCCeEEEecchhhhhHHHhhcC-----CC--EEECHHHC
Confidence 12222222223333455556666554432221 22358888999975 121 12 46888776
Q ss_pred C
Q 016995 289 A 289 (379)
Q Consensus 289 ~ 289 (379)
.
T Consensus 260 w 260 (289)
T 1o7q_A 260 W 260 (289)
T ss_dssp B
T ss_pred C
Confidence 4
No 12
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=20.36 E-value=4.4e+02 Score=23.52 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=41.9
Q ss_pred cchHHHHHHHhhhcCCCccccccEEEEEc--CHHHHHHhhhcCCcEEEecCCCCCCCccccccCCHHHHHHHHHHHHHHH
Q 016995 100 NSIFDIFLESFRTGNGTGKLLDHLVVVAL--DSKALDHCLSTHPHCYALNTSGLDFSGKEAYFMTSSYLEMMWIRIRLLS 177 (379)
Q Consensus 100 ~s~ldlfLeS~r~G~~t~~ll~~llVvAl--D~~a~~~C~~~~~~cy~~~~~g~d~~~~~~~f~s~~yl~mmw~K~~~l~ 177 (379)
|+.+...++.++.|+- ..+=.+|++- |....++|++.|+|++.++.. .|.+ -.++.
T Consensus 19 gsnl~all~~~~~~~~---~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~---------~~~~----------~~~~~ 76 (215)
T 3kcq_A 19 GSNLEALAKAFSTEES---SVVISCVISNNAEARGLLIAQSYGIPTFVVKRK---------PLDI----------EHIST 76 (215)
T ss_dssp CHHHHHHHHHTCCC-C---SEEEEEEEESCTTCTHHHHHHHTTCCEEECCBT---------TBCH----------HHHHH
T ss_pred cHHHHHHHHHHHcCCC---CcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcc---------cCCh----------HHHHH
Confidence 5678888888876521 1233345552 445678999999999986521 1111 34555
Q ss_pred HHHHcCceEEEe
Q 016995 178 DVLAMGYNFVFT 189 (379)
Q Consensus 178 ~vL~lGy~vLfs 189 (379)
.+-+.+.|++++
T Consensus 77 ~L~~~~~Dlivl 88 (215)
T 3kcq_A 77 VLREHDVDLVCL 88 (215)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHhCCCEEEE
Confidence 666777777777
Done!