Query 016996
Match_columns 379
No_of_seqs 253 out of 2714
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.8E-57 6.3E-62 420.7 28.8 289 76-368 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 8E-57 2.7E-61 417.3 24.2 282 80-370 3-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3.8E-41 1.3E-45 312.0 12.4 220 36-276 69-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 8.1E-41 2.8E-45 309.0 11.7 224 36-274 72-297 (297)
5 2acm_A Mucin-1; auto-catalytic 18.7 35 0.0012 22.0 0.7 20 123-142 40-59 (66)
6 3f2e_A SIRV coat protein; four 16.1 67 0.0023 21.9 1.6 34 319-352 6-43 (100)
7 3tgu_G UQCRQ, mitochondrial ub 13.9 1.5E+02 0.0052 20.4 3.1 36 241-276 33-68 (81)
8 3tgu_G UQCRQ, mitochondrial ub 12.8 1.6E+02 0.0053 20.4 2.9 36 336-371 33-69 (81)
9 2bnk_A Early protein GP16.7; D 11.6 1.4E+02 0.0048 19.0 2.1 44 300-344 21-65 (67)
10 3vjj_A P9-1; 3.00A {Rice black 11.1 1.1E+02 0.0039 26.4 2.1 35 296-337 274-308 (368)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-57 Score=420.65 Aligned_cols=289 Identities=53% Similarity=0.878 Sum_probs=243.2
Q ss_pred hhhHHHHHhhhHHHHHHHhhcccHHHHHHHHHcCchhhhcCCCCCCCCchHHHHHHHhhccccccccccchhhhHhhhHH
Q 016996 76 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPT 155 (379)
Q Consensus 76 ~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 155 (379)
.+.+.++++|++|++++.++++|+|+||||+|++..... ......|+++++++++|+++||++|||||+.+++++.+|.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 456789999999999999999999999999999864211 1112358999999999999999999999999999999999
Q ss_pred HHhHHhHHHHHHHHhccCC-CCCCchhhhHHHhHHHhHhhHhHhhhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHH
Q 016996 156 QALNFAFKDYFKRLFNFKK-DRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYK 234 (379)
Q Consensus 156 ~~~~f~~y~~~k~~~~~~~-~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
.+++|.+||.+|+.+.... ..+.........+++|++||++++++++|+|+||+|||++... ......|++++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHHHHH
Confidence 9999999999999543322 2222223456789999999999999999999999999998531 112457899999999
Q ss_pred HHHHhcCcccccccchhhHHhHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHHHHHHhhhhchHHHHHHhhccc
Q 016996 235 KTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMT 314 (379)
Q Consensus 235 ~i~~~~G~~glyrG~~~~~lr~~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~Pldviktr~q~~ 314 (379)
+|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+. .+.+....+++++++|++++++++|+||||+|||++
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999987543 234567789999999999999999999999999987
Q ss_pred CCC---CcccCCHHHHHHHHHHhhChhhcccchHHHHHHhhhhhHHHHHHHHHHHHH
Q 016996 315 SGE---AVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLVL 368 (379)
Q Consensus 315 ~~~---~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~~~~~ye~~~~~~ 368 (379)
... ...|.++++|+++|+++||++|||||+.|+++|..++++.|.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 532 346899999999999999999999999999999654443399999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8e-57 Score=417.34 Aligned_cols=282 Identities=24% Similarity=0.410 Sum_probs=248.4
Q ss_pred HHHHhhhHHHHHHHhhcccHHHHHHHHHcCchhhhc--CCCCCCCCchHHHHHHHhhccccccccccchhhhHhhhHHHH
Q 016996 80 VDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKN--GRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQA 157 (379)
Q Consensus 80 ~~~~ag~~a~~~~~~~~~Pld~iktr~Q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 157 (379)
.++++|++|++++.++++|+|+||+|+|++...... ......|+++++++++|+++||++|||||+.+++++.+|..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998642110 011235899999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhccCCCCCCchhhhHHHhHHHhHhhHhHhhhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHHHHH
Q 016996 158 LNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTL 237 (379)
Q Consensus 158 ~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (379)
++|.+||.+|+.+.+..+. ......+++|++||+++.++++|+|+||+|+|++... .....|.+.++++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHH
Confidence 9999999999988654221 2345689999999999999999999999999998541 12457899999999999
Q ss_pred HhcCcccccccchhhHHhHHHHHHHHHHHHHHhhhhhhcCC-CCchhHHHHHHHHHHHHHHhhhhchHHHHHHhhcccCC
Q 016996 238 KSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDG-MQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSG 316 (379)
Q Consensus 238 ~~~G~~glyrG~~~~~lr~~~~~~i~~~~ye~~k~~~~~~~-~~~~~~~~~~~~~~ag~~~~~~~~Pldviktr~q~~~~ 316 (379)
++||++|||||+.|+++|.+|.++++|.+||.+|+.+.+.. .+++....++++++||++++++++|+||||+|||.+..
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999987643 34567788999999999999999999999999998753
Q ss_pred CCcccCCHHHHHHHHHHhhChhhcccchHHHHHHhhhhhHH-HHHHHHHHHHHcC
Q 016996 317 EAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRAVAGAGV-LAGYDKLQLVLFG 370 (379)
Q Consensus 317 ~~~~~~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~~-~~~ye~~~~~~~~ 370 (379)
..|.++++|+++|+++||++|||||+.|+++|.+|+.++ |.+||.+|+++.+
T Consensus 236 --~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 --GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp --SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred --cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999888 9999999987654
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-41 Score=312.02 Aligned_cols=220 Identities=21% Similarity=0.316 Sum_probs=194.1
Q ss_pred CccccCCCccchhhhccCCcccccCCCCcccccCCCccchhhhHHHHHhhhHHHHHHHhhcccHHHHHHHHHcCchhhhc
Q 016996 36 GSFVNRGSQNSFWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKN 115 (379)
Q Consensus 36 G~~~~~~~~~p~~a~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~Q~~~~~~~~ 115 (379)
|+.+++++.+|+.++ +|.+||.+|+.+....+ ..+....+++|++|++++.++++|+|+||+|+|++...
T Consensus 69 G~~~~l~~~~~~~~i----~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--- 138 (303)
T 2lck_A 69 GLVAGLQRQMSFASV----RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--- 138 (303)
T ss_dssp SHHHHHHHHHHHHHH----TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---
Confidence 999999999999999 99999999988765322 24567899999999999999999999999999998632
Q ss_pred CCCCCCCCchHHHHHHHhhccccccccccchhhhHhhhHHHHhHHhHHHHHHHHhccCCCCCCchhhhHHHhHHHhHhhH
Q 016996 116 GRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGA 195 (379)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~ 195 (379)
.....|++.++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+..... ......+++|++||+
T Consensus 139 -~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~---~~~~~~~~~g~~ag~ 214 (303)
T 2lck_A 139 -GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT---DDLPCHFTSAFGAGF 214 (303)
T ss_dssp -CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC---SCHHHHHHHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHH
Confidence 1123589999999999999999999999999999999999999999999999886543222 223467999999999
Q ss_pred hHhhhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHHHHHHhcCcccccccchhhHHhHHHHHHHHHHHHHHhhhhhh
Q 016996 196 SSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL 275 (379)
Q Consensus 196 ~~~~v~~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr~~~~~~i~~~~ye~~k~~~~ 275 (379)
+++++++|+|+||+|||++.. ..|.++++|+++|+++||++|||||+.|+++|.+|.++++|.+||.+|+.+.
T Consensus 215 ~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 215 CTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999753 4589999999999999999999999999999999999999999999998875
Q ss_pred c
Q 016996 276 T 276 (379)
Q Consensus 276 ~ 276 (379)
+
T Consensus 288 ~ 288 (303)
T 2lck_A 288 A 288 (303)
T ss_dssp C
T ss_pred H
Confidence 3
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.1e-41 Score=309.04 Aligned_cols=224 Identities=18% Similarity=0.278 Sum_probs=186.2
Q ss_pred CccccCCCccchhhhccCCcccccCCCCcccccC-CC-ccchhhhHHHHHhhhHHHHHHHhhcccHHHHHHHHHcCchhh
Q 016996 36 GSFVNRGSQNSFWAASQGTGLALVSPVSPIFVQA-PS-EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMI 113 (379)
Q Consensus 36 G~~~~~~~~~p~~a~~~~~~f~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~Q~~~~~~ 113 (379)
|+.+++++.+|..++ +|.+||.+++.+... .. +.........+++|++|++++.++++|+|+||+|+|++....
T Consensus 72 G~~~~l~~~~~~~~~----~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~ 147 (297)
T 1okc_A 72 GNLANVIRYFPTQAL----NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG 147 (297)
T ss_dssp TTHHHHHHHHHHHHH----HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC
Confidence 999999999999999 999999999854332 11 222234577899999999999999999999999999975321
Q ss_pred hcCCCCCCCCchHHHHHHHhhccccccccccchhhhHhhhHHHHhHHhHHHHHHHHhccCCCCCCchhhhHHHhHHHhHh
Q 016996 114 KNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAA 193 (379)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~a 193 (379)
.....|+++++++++|+++||++|||||+.+++++.+|..+++|.+||.+|+.+.+..+ ......+++|++|
T Consensus 148 ---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~-----~~~~~~~~~g~~a 219 (297)
T 1okc_A 148 ---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-----VHIIVSWMIAQTV 219 (297)
T ss_dssp ---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-----SCHHHHHHHHHHH
T ss_pred ---CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----ccHHHHHHHHHHH
Confidence 11245899999999999999999999999999999999999999999999997754321 1234678999999
Q ss_pred hHhHhhhhccHHHHHHHHhcchhhhhcCCCcccCcHHHHHHHHHHhcCcccccccchhhHHhHHHHHHHHHHHHHHhhhh
Q 016996 194 GASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPV 273 (379)
Q Consensus 194 g~~~~~v~~P~dvvktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~lr~~~~~~i~~~~ye~~k~~ 273 (379)
|++++++++|+|+||+|||++.... +....|+++++|+++|+++||++|||||+.|+++|. +.++++|.+||.+|+.
T Consensus 220 g~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 220 TAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHHhcChHHHHHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999999999975421 123478999999999999999999999999999996 5789999999999875
Q ss_pred h
Q 016996 274 V 274 (379)
Q Consensus 274 ~ 274 (379)
+
T Consensus 297 l 297 (297)
T 1okc_A 297 V 297 (297)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=18.68 E-value=35 Score=22.01 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.2
Q ss_pred CchHHHHHHHhhcccccccc
Q 016996 123 KGISDCFARTVKDEGILSLW 142 (379)
Q Consensus 123 ~~~~~~~~~i~~~eG~~gly 142 (379)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999998885
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=16.05 E-value=67 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.496 Sum_probs=23.0
Q ss_pred cccCCHHHHHHHHHHhhCh----hhcccchHHHHHHhh
Q 016996 319 VKYKSSLHAFQEIIKNEGT----KSLFKGAGANILRAV 352 (379)
Q Consensus 319 ~~~~~~~~~~~~i~~~eG~----~gly~G~~~~~~~~~ 352 (379)
+++.++-.-+..++.+-|+ ++.|.|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4566666666777777775 678888888777654
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=13.90 E-value=1.5e+02 Score=20.45 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=26.3
Q ss_pred CcccccccchhhHHhHHHHHHHHHHHHHHhhhhhhc
Q 016996 241 GIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLT 276 (379)
Q Consensus 241 G~~glyrG~~~~~lr~~~~~~i~~~~ye~~k~~~~~ 276 (379)
|+...+|-+.-.++..+|...+.+.+|+..++....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444445567888999999999999998877653
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=12.75 E-value=1.6e+02 Score=20.41 Aligned_cols=36 Identities=3% Similarity=-0.094 Sum_probs=25.1
Q ss_pred ChhhcccchHHHHHHhhhhhHH-HHHHHHHHHHHcCC
Q 016996 336 GTKSLFKGAGANILRAVAGAGV-LAGYDKLQLVLFGK 371 (379)
Q Consensus 336 G~~gly~G~~~~~~~~~~~~~~-~~~ye~~~~~~~~~ 371 (379)
|+...+|-+.-.+++++|..++ +.+|+..++.-...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566788889987777 89998887765433
No 9
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=11.60 E-value=1.4e+02 Score=19.05 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=28.1
Q ss_pred hhchHHHHHHhhcccCCC-CcccCCHHHHHHHHHHhhChhhcccch
Q 016996 300 ASYPIDTVRRRMMMTSGE-AVKYKSSLHAFQEIIKNEGTKSLFKGA 344 (379)
Q Consensus 300 ~~~Pldviktr~q~~~~~-~~~~~~~~~~~~~i~~~eG~~gly~G~ 344 (379)
+--|+|+|---. .+... ...-.+....-|.-|+-|.-+-+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 456999887543 22221 112234556668889989989999985
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=11.12 E-value=1.1e+02 Score=26.42 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=25.6
Q ss_pred HHhhhhchHHHHHHhhcccCCCCcccCCHHHHHHHHHHhhCh
Q 016996 296 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGT 337 (379)
Q Consensus 296 ~~~~~~~Pldviktr~q~~~~~~~~~~~~~~~~~~i~~~eG~ 337 (379)
.+++=.||||.+|-.++.- -+....+++.+.+||+
T Consensus 274 LaTFdnypfdllRfqL~Sl-------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL-------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC-------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh-------ccChHHHHHHHHhcCc
Confidence 4556679999998877632 2445678899999983
Done!