Query 016998
Match_columns 379
No_of_seqs 344 out of 2872
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02406 ethanolamine-phosphat 100.0 1.3E-77 2.9E-82 601.0 32.9 361 10-374 2-379 (418)
2 KOG2803 Choline phosphate cyti 100.0 8.8E-79 1.9E-83 577.2 22.3 285 61-350 4-292 (358)
3 PTZ00308 ethanolamine-phosphat 100.0 8.9E-67 1.9E-71 517.7 32.6 304 61-374 7-319 (353)
4 cd02174 CCT CTP:phosphocholine 100.0 5.2E-31 1.1E-35 233.3 16.8 137 65-205 2-140 (150)
5 PLN02413 choline-phosphate cyt 100.0 3.7E-30 8E-35 245.1 16.8 142 60-205 22-167 (294)
6 COG0615 TagD Cytidylyltransfer 100.0 4.8E-30 1E-34 222.1 13.7 132 65-202 1-139 (140)
7 KOG2804 Phosphorylcholine tran 100.0 5.9E-30 1.3E-34 242.8 10.4 154 62-225 60-215 (348)
8 PLN02406 ethanolamine-phosphat 100.0 9.6E-29 2.1E-33 248.6 16.9 146 54-203 240-390 (418)
9 cd02173 ECT CTP:phosphoethanol 100.0 2E-28 4.4E-33 217.2 17.0 135 65-203 2-140 (152)
10 cd02172 RfaE_N N-terminal doma 100.0 1.3E-27 2.9E-32 210.2 16.8 134 65-203 4-142 (144)
11 cd02174 CCT CTP:phosphocholine 100.0 3.3E-28 7.1E-33 215.4 12.2 117 256-374 2-127 (150)
12 cd02170 cytidylyltransferase c 100.0 2.3E-27 5E-32 205.8 16.9 133 65-202 1-135 (136)
13 cd02173 ECT CTP:phosphoethanol 100.0 4.3E-28 9.3E-33 215.2 12.4 119 256-374 2-129 (152)
14 PTZ00308 ethanolamine-phosphat 99.9 2.5E-27 5.3E-32 235.8 16.3 146 54-203 181-330 (353)
15 PLN02413 choline-phosphate cyt 99.9 8.3E-27 1.8E-31 222.2 12.5 121 252-374 23-154 (294)
16 COG0615 TagD Cytidylyltransfer 99.9 6.1E-27 1.3E-31 202.8 9.6 97 258-355 3-99 (140)
17 TIGR02199 rfaE_dom_II rfaE bif 99.9 6.8E-26 1.5E-30 199.3 15.8 130 65-201 11-143 (144)
18 TIGR01518 g3p_cytidyltrns glyc 99.9 2.4E-25 5.2E-30 190.9 13.8 123 68-200 1-125 (125)
19 cd02171 G3P_Cytidylyltransfera 99.9 6.7E-25 1.4E-29 188.7 15.7 128 65-202 1-128 (129)
20 KOG2803 Choline phosphate cyti 99.9 1.4E-23 3.1E-28 200.5 7.8 93 257-351 9-101 (358)
21 PRK07143 hypothetical protein; 99.9 1E-21 2.2E-26 190.0 16.0 137 64-203 14-162 (279)
22 cd02064 FAD_synthetase_N FAD s 99.9 6.7E-22 1.5E-26 179.9 13.6 134 68-203 2-158 (180)
23 COG2870 RfaE ADP-heptose synth 99.9 5.2E-22 1.1E-26 196.0 11.4 119 256-375 332-456 (467)
24 PRK11316 bifunctional heptose 99.9 3E-21 6.6E-26 199.0 16.2 133 64-202 339-473 (473)
25 PRK05627 bifunctional riboflav 99.9 3.6E-21 7.8E-26 188.6 14.8 135 67-203 15-173 (305)
26 KOG2804 Phosphorylcholine tran 99.8 2.1E-21 4.5E-26 184.8 7.6 93 257-351 64-158 (348)
27 TIGR02199 rfaE_dom_II rfaE bif 99.8 2.2E-20 4.9E-25 164.3 13.2 118 255-373 10-133 (144)
28 PF06574 FAD_syn: FAD syntheta 99.8 7.7E-21 1.7E-25 169.6 8.8 131 63-195 3-157 (157)
29 TIGR00083 ribF riboflavin kina 99.8 4.2E-20 9E-25 179.6 13.7 134 68-203 1-156 (288)
30 TIGR01518 g3p_cytidyltrns glyc 99.8 5.7E-20 1.2E-24 157.6 11.6 111 259-371 1-114 (125)
31 PRK11316 bifunctional heptose 99.8 2.4E-19 5.2E-24 184.9 12.2 120 254-374 338-463 (473)
32 cd02171 G3P_Cytidylyltransfera 99.8 4.2E-19 9.1E-24 152.7 11.2 114 257-372 2-116 (129)
33 COG2870 RfaE ADP-heptose synth 99.8 3.4E-19 7.5E-24 176.2 11.8 131 66-202 333-465 (467)
34 COG0196 RibF FAD synthase [Coe 99.8 1.2E-18 2.6E-23 169.9 13.0 137 65-203 15-173 (304)
35 cd02170 cytidylyltransferase c 99.8 1.8E-18 3.9E-23 150.0 11.3 95 257-354 2-96 (136)
36 cd02172 RfaE_N N-terminal doma 99.8 2.4E-18 5.1E-23 151.5 12.2 97 255-354 3-99 (144)
37 cd02039 cytidylyltransferase_l 99.8 6.1E-18 1.3E-22 145.6 11.6 131 67-199 1-143 (143)
38 COG0669 CoaD Phosphopantethein 99.8 3.5E-18 7.6E-23 149.9 9.6 108 256-370 2-121 (159)
39 PRK00777 phosphopantetheine ad 99.7 1.6E-17 3.5E-22 147.7 9.3 132 66-203 2-145 (153)
40 PRK13964 coaD phosphopantethei 99.7 4.4E-16 9.6E-21 136.3 11.0 109 257-372 2-123 (140)
41 PRK00168 coaD phosphopantethei 99.6 1.5E-14 3.3E-19 129.2 12.3 130 65-203 1-138 (159)
42 smart00764 Citrate_ly_lig Citr 99.6 1.6E-14 3.6E-19 131.9 12.7 127 70-203 4-165 (182)
43 cd02169 Citrate_lyase_ligase C 99.6 1.5E-14 3.2E-19 141.6 12.1 130 65-203 114-280 (297)
44 PRK00777 phosphopantetheine ad 99.6 1.2E-14 2.6E-19 129.2 9.8 110 257-372 2-127 (153)
45 PLN02388 phosphopantetheine ad 99.6 5.1E-15 1.1E-19 134.2 6.6 138 61-205 15-169 (177)
46 PRK00168 coaD phosphopantethei 99.6 2.9E-14 6.2E-19 127.4 11.2 106 257-369 2-119 (159)
47 TIGR01527 arch_NMN_Atrans nico 99.5 9.2E-14 2E-18 125.0 13.6 126 67-203 1-136 (165)
48 PRK01170 phosphopantetheine ad 99.5 4.5E-14 9.9E-19 138.8 10.1 110 258-373 2-125 (322)
49 cd02163 PPAT Phosphopantethein 99.5 1.1E-13 2.3E-18 123.0 11.4 127 68-203 2-136 (153)
50 PRK01170 phosphopantetheine ad 99.5 4.6E-14 1E-18 138.8 8.9 125 67-201 2-140 (322)
51 PF01467 CTP_transf_2: Cytidyl 99.5 8.2E-14 1.8E-18 120.7 6.7 62 69-131 1-63 (157)
52 TIGR00125 cyt_tran_rel cytidyl 99.5 1.3E-13 2.8E-18 104.5 6.8 65 258-324 1-65 (66)
53 cd02166 NMNAT_Archaea Nicotina 99.4 1.2E-12 2.6E-17 117.5 13.3 126 67-202 1-137 (163)
54 TIGR00125 cyt_tran_rel cytidyl 99.4 2.1E-13 4.5E-18 103.4 6.7 64 67-130 1-64 (66)
55 TIGR01510 coaD_prev_kdtB pante 99.4 1.5E-12 3.2E-17 115.9 12.1 119 67-203 1-136 (155)
56 cd02039 cytidylyltransferase_l 99.4 2.5E-12 5.4E-17 110.6 11.4 110 258-370 1-129 (143)
57 cd02164 PPAT_CoAS phosphopante 99.4 7.2E-13 1.6E-17 116.6 7.8 122 67-198 1-142 (143)
58 PRK00071 nadD nicotinic acid m 99.4 4.2E-12 9.2E-17 117.5 12.7 136 64-203 3-180 (203)
59 COG1057 NadD Nicotinic acid mo 99.4 5E-12 1.1E-16 116.8 11.5 137 64-203 2-174 (197)
60 cd02163 PPAT Phosphopantethein 99.3 5.6E-12 1.2E-16 112.0 10.6 87 258-351 1-88 (153)
61 PRK06973 nicotinic acid mononu 99.3 1.2E-11 2.5E-16 118.0 13.3 117 65-185 22-154 (243)
62 cd02165 NMNAT Nicotinamide/nic 99.3 7.9E-12 1.7E-16 114.6 11.4 133 68-203 2-171 (192)
63 TIGR01527 arch_NMN_Atrans nico 99.3 3.7E-12 8E-17 114.7 8.3 106 259-369 2-118 (165)
64 PF01467 CTP_transf_2: Cytidyl 99.3 1.6E-12 3.4E-17 112.7 5.5 91 260-353 1-121 (157)
65 PRK08887 nicotinic acid mononu 99.3 1.9E-11 4.2E-16 110.9 11.2 133 66-203 3-149 (174)
66 TIGR00482 nicotinate (nicotina 99.2 6.4E-11 1.4E-15 108.9 12.1 131 70-203 2-172 (193)
67 cd02064 FAD_synthetase_N FAD s 99.2 3.2E-11 6.9E-16 109.8 10.0 111 259-370 2-139 (180)
68 cd02168 NMNAT_Nudix Nicotinami 99.2 1.6E-11 3.6E-16 112.1 7.9 129 68-203 2-145 (181)
69 PRK13964 coaD phosphopantethei 99.2 6.1E-11 1.3E-15 104.0 10.8 124 65-201 1-137 (140)
70 TIGR01510 coaD_prev_kdtB pante 99.2 5.8E-11 1.3E-15 105.7 10.1 86 258-350 1-87 (155)
71 COG1019 Predicted nucleotidylt 99.2 5.2E-11 1.1E-15 104.2 9.4 127 63-199 3-145 (158)
72 PRK05379 bifunctional nicotina 99.2 4.5E-11 9.7E-16 119.2 10.2 135 63-204 4-151 (340)
73 PRK01153 nicotinamide-nucleoti 99.2 2.3E-10 4.9E-15 104.0 13.9 127 67-203 2-139 (174)
74 PRK07152 nadD putative nicotin 99.2 1.1E-10 2.3E-15 116.5 11.9 135 65-203 1-168 (342)
75 cd02166 NMNAT_Archaea Nicotina 99.2 5.5E-11 1.2E-15 106.8 8.7 107 259-370 2-121 (163)
76 cd02156 nt_trans nucleotidyl t 99.2 2.2E-11 4.8E-16 101.1 5.0 85 258-371 1-95 (105)
77 cd02167 NMNAT_NadR Nicotinamid 99.2 3.5E-10 7.6E-15 101.1 11.9 127 68-201 2-147 (158)
78 cd02164 PPAT_CoAS phosphopante 99.0 4.6E-10 1E-14 98.8 7.0 109 259-372 2-128 (143)
79 PRK13670 hypothetical protein; 99.0 8.7E-10 1.9E-14 111.7 9.5 94 66-162 2-103 (388)
80 PRK08099 bifunctional DNA-bind 99.0 4.4E-09 9.4E-14 107.1 14.3 130 65-201 52-204 (399)
81 COG0669 CoaD Phosphopantethein 99.0 1.5E-09 3.3E-14 95.7 8.6 125 65-203 2-139 (159)
82 PRK05627 bifunctional riboflav 99.0 2E-09 4.4E-14 105.8 10.5 112 258-370 15-154 (305)
83 COG1019 Predicted nucleotidylt 99.0 7.5E-10 1.6E-14 97.0 6.1 113 255-372 4-131 (158)
84 cd02167 NMNAT_NadR Nicotinamid 98.9 1.1E-08 2.3E-13 91.5 10.9 105 259-367 2-128 (158)
85 cd09286 NMNAT_Eukarya Nicotina 98.9 1.5E-08 3.2E-13 95.7 11.1 84 67-152 2-98 (225)
86 PLN02945 nicotinamide-nucleoti 98.9 2.3E-08 4.9E-13 95.0 11.9 96 66-163 23-140 (236)
87 cd00560 PanC Pantoate-beta-ala 98.8 4.4E-09 9.6E-14 102.0 5.8 113 65-181 24-163 (277)
88 TIGR00124 cit_ly_ligase [citra 98.8 7.7E-08 1.7E-12 95.8 13.6 129 65-202 139-308 (332)
89 PRK00380 panC pantoate--beta-a 98.8 7E-09 1.5E-13 100.9 5.4 110 67-181 26-162 (281)
90 cd02156 nt_trans nucleotidyl t 98.7 1.1E-08 2.3E-13 84.9 5.0 57 68-126 2-58 (105)
91 PRK07143 hypothetical protein; 98.7 9.4E-08 2E-12 93.0 12.1 98 255-354 14-119 (279)
92 PRK13671 hypothetical protein; 98.7 7E-08 1.5E-12 94.5 10.1 90 69-163 4-103 (298)
93 PRK13793 nicotinamide-nucleoti 98.7 6.5E-08 1.4E-12 89.3 9.3 60 65-126 4-63 (196)
94 PRK05379 bifunctional nicotina 98.7 1.4E-07 3.1E-12 94.2 11.5 97 255-355 5-117 (340)
95 cd02168 NMNAT_Nudix Nicotinami 98.7 3.4E-08 7.3E-13 90.3 6.4 57 259-319 2-58 (181)
96 PLN02388 phosphopantetheine ad 98.7 4.1E-08 8.9E-13 89.3 6.9 99 251-353 14-120 (177)
97 PRK00071 nadD nicotinic acid m 98.6 1.3E-07 2.9E-12 87.5 9.4 111 256-370 4-136 (203)
98 cd02165 NMNAT Nicotinamide/nic 98.6 7.1E-08 1.5E-12 88.5 7.1 108 258-370 1-130 (192)
99 PRK01153 nicotinamide-nucleoti 98.6 1.6E-07 3.6E-12 85.3 9.3 107 258-368 2-120 (174)
100 PRK13671 hypothetical protein; 98.5 4.2E-07 9.2E-12 89.0 8.9 87 263-354 7-105 (298)
101 TIGR00124 cit_ly_ligase [citra 98.5 4E-07 8.6E-12 90.7 8.4 65 255-328 138-203 (332)
102 PRK13793 nicotinamide-nucleoti 98.5 3.7E-07 7.9E-12 84.3 7.1 60 256-319 4-63 (196)
103 TIGR01526 nadR_NMN_Atrans nico 98.5 3.6E-07 7.7E-12 90.8 7.6 58 66-125 2-59 (325)
104 TIGR01526 nadR_NMN_Atrans nico 98.5 4.3E-07 9.4E-12 90.2 8.1 67 257-327 2-70 (325)
105 KOG3351 Predicted nucleotidylt 98.4 8.8E-07 1.9E-11 83.5 8.4 137 57-201 134-285 (293)
106 COG1056 NadR Nicotinamide mono 98.4 2.6E-06 5.7E-11 77.0 10.2 60 64-125 2-61 (172)
107 KOG3351 Predicted nucleotidylt 98.3 1.6E-06 3.4E-11 81.8 7.6 84 250-334 136-227 (293)
108 PRK08099 bifunctional DNA-bind 98.3 1.6E-06 3.5E-11 88.5 8.3 116 251-368 47-186 (399)
109 PRK08887 nicotinic acid mononu 98.3 4.9E-06 1.1E-10 75.5 10.5 65 256-327 2-69 (174)
110 TIGR00482 nicotinate (nicotina 98.3 3.7E-06 7.9E-11 77.4 8.8 107 261-371 2-130 (193)
111 COG1056 NadR Nicotinamide mono 98.2 2.7E-06 5.9E-11 76.9 6.0 60 256-319 3-62 (172)
112 PRK07152 nadD putative nicotin 98.1 7.7E-06 1.7E-10 81.7 8.7 110 257-370 2-133 (342)
113 smart00764 Citrate_ly_lig Citr 98.1 1.9E-05 4.2E-10 72.3 10.3 100 264-372 7-148 (182)
114 PF06574 FAD_syn: FAD syntheta 98.1 1E-05 2.3E-10 72.3 8.4 114 255-370 4-146 (157)
115 cd02169 Citrate_lyase_ligase C 98.1 7.4E-06 1.6E-10 80.5 7.7 107 255-370 113-261 (297)
116 COG1057 NadD Nicotinic acid mo 98.0 1.8E-05 3.8E-10 73.4 8.3 114 255-372 2-138 (197)
117 PRK06973 nicotinic acid mononu 98.0 2.9E-05 6.2E-10 74.3 9.5 109 256-370 22-157 (243)
118 PF08218 Citrate_ly_lig: Citra 98.0 8.1E-05 1.8E-09 67.5 11.5 124 71-203 5-165 (182)
119 TIGR00018 panC pantoate--beta- 97.9 2E-05 4.3E-10 76.8 6.9 64 67-134 26-92 (282)
120 PLN02660 pantoate--beta-alanin 97.8 3.6E-05 7.7E-10 75.0 7.1 65 66-134 24-91 (284)
121 TIGR00083 ribF riboflavin kina 97.8 6.1E-05 1.3E-09 73.8 8.0 95 259-354 1-110 (288)
122 cd09286 NMNAT_Eukarya Nicotina 97.7 0.00011 2.4E-09 69.4 8.2 82 258-342 2-95 (225)
123 PLN02945 nicotinamide-nucleoti 97.6 0.00039 8.4E-09 66.1 9.9 96 253-351 19-139 (236)
124 COG3053 CitC Citrate lyase syn 97.6 0.0012 2.7E-08 64.1 13.1 135 62-203 142-316 (352)
125 PRK13670 hypothetical protein; 97.6 0.00025 5.4E-09 72.3 8.9 87 262-352 7-104 (388)
126 PF05636 HIGH_NTase1: HIGH Nuc 97.4 0.00021 4.6E-09 72.8 5.8 93 66-163 2-104 (388)
127 COG0196 RibF FAD synthase [Coe 97.4 0.0011 2.4E-08 65.4 9.9 114 256-371 15-155 (304)
128 COG1323 Predicted nucleotidylt 97.3 0.00063 1.4E-08 68.3 7.9 89 70-162 6-103 (358)
129 TIGR00339 sopT ATP sulphurylas 97.0 0.0073 1.6E-07 61.5 11.4 93 66-163 184-289 (383)
130 COG1323 Predicted nucleotidylt 96.6 0.0052 1.1E-07 61.8 7.5 84 264-352 9-104 (358)
131 PF08218 Citrate_ly_lig: Citra 96.6 0.0063 1.4E-07 55.4 7.0 99 265-372 8-148 (182)
132 PF05636 HIGH_NTase1: HIGH Nuc 96.4 0.0064 1.4E-07 62.1 6.2 85 264-353 9-105 (388)
133 TIGR00018 panC pantoate--beta- 95.7 0.029 6.3E-07 54.9 7.0 66 259-328 27-93 (282)
134 PRK00380 panC pantoate--beta-a 95.5 0.046 1E-06 53.5 7.8 72 255-328 21-93 (281)
135 PLN02660 pantoate--beta-alanin 95.4 0.05 1.1E-06 53.3 7.6 66 259-328 26-92 (284)
136 COG3053 CitC Citrate lyase syn 94.8 0.11 2.3E-06 50.9 7.6 111 253-372 142-299 (352)
137 cd00560 PanC Pantoate-beta-ala 94.5 0.11 2.4E-06 50.8 7.1 88 259-350 27-120 (277)
138 PF02569 Pantoate_ligase: Pant 94.4 0.1 2.2E-06 51.0 6.7 66 68-134 24-92 (280)
139 PRK13477 bifunctional pantoate 94.0 0.16 3.4E-06 53.8 7.5 68 67-135 21-91 (512)
140 COG0414 PanC Panthothenate syn 93.9 0.2 4.2E-06 48.7 7.4 74 58-134 16-92 (285)
141 PRK04149 sat sulfate adenylylt 93.7 1.9 4.1E-05 44.2 14.5 94 65-163 186-290 (391)
142 COG2046 MET3 ATP sulfurylase ( 93.0 1.4 3E-05 44.6 11.8 95 65-164 183-288 (397)
143 cd00517 ATPS ATP-sulfurylase. 92.7 1.8 4E-05 43.8 12.5 94 66-164 157-263 (353)
144 PF01747 ATP-sulfurylase: ATP- 92.4 0.56 1.2E-05 44.2 7.9 93 67-164 22-126 (215)
145 PRK13477 bifunctional pantoate 92.0 0.27 5.8E-06 52.1 5.8 64 257-328 21-91 (512)
146 KOG3199 Nicotinamide mononucle 92.0 2.7 5.9E-05 39.4 11.5 60 65-125 8-72 (234)
147 PF02569 Pantoate_ligase: Pant 91.4 0.42 9.2E-06 46.7 6.0 69 256-327 22-92 (280)
148 PRK05537 bifunctional sulfate 91.1 2.6 5.7E-05 45.3 12.1 96 65-164 186-291 (568)
149 TIGR00339 sopT ATP sulphurylas 89.8 4.2 9.1E-05 41.6 11.8 110 258-374 185-332 (383)
150 KOG3042 Panthothenate syntheta 89.1 0.89 1.9E-05 42.8 5.7 76 56-134 16-94 (283)
151 COG0414 PanC Panthothenate syn 88.7 0.44 9.6E-06 46.3 3.6 39 255-294 21-59 (285)
152 KOG3042 Panthothenate syntheta 72.2 6.5 0.00014 37.2 4.7 39 255-294 23-61 (283)
153 KOG3199 Nicotinamide mononucle 72.1 14 0.0003 34.9 6.8 70 258-330 10-85 (234)
154 PLN02341 pfkB-type carbohydrat 70.7 1.3 2.7E-05 46.4 -0.3 29 255-283 413-441 (470)
155 PLN02341 pfkB-type carbohydrat 47.4 9.3 0.0002 40.0 1.3 29 64-92 413-441 (470)
156 PRK04149 sat sulfate adenylylt 43.1 2.1E+02 0.0046 29.5 10.3 111 257-374 187-328 (391)
157 KOG2007 Cysteinyl-tRNA synthet 39.3 71 0.0015 34.0 6.2 124 61-191 51-207 (586)
158 cd00517 ATPS ATP-sulfurylase. 34.3 5.1E+02 0.011 26.3 11.8 109 259-374 159-302 (353)
159 cd01715 ETF_alpha The electron 29.3 2.6E+02 0.0056 24.6 7.5 82 259-355 4-96 (168)
160 COG2046 MET3 ATP sulfurylase ( 26.9 71 0.0015 32.7 3.7 112 255-373 182-323 (397)
161 PRK02615 thiamine-phosphate py 25.9 1.8E+02 0.004 29.4 6.5 27 75-101 219-247 (347)
162 PF08115 Toxin_28: SFI toxin f 24.4 38 0.00082 22.4 0.8 8 372-379 7-14 (35)
163 cd00951 KDGDH 5-dehydro-4-deox 22.8 4E+02 0.0087 25.8 8.1 115 78-201 20-147 (289)
164 PRK12457 2-dehydro-3-deoxyphos 22.6 55 0.0012 32.2 1.9 62 73-134 195-273 (281)
165 PRK05537 bifunctional sulfate 22.5 5.1E+02 0.011 28.0 9.5 111 258-374 188-333 (568)
166 PRK00536 speE spermidine synth 22.3 82 0.0018 30.6 3.1 39 60-105 68-106 (262)
167 PRK05198 2-dehydro-3-deoxyphos 22.2 61 0.0013 31.6 2.2 58 73-130 187-261 (264)
168 COG0826 Collagenase and relate 22.1 6.8E+02 0.015 25.3 9.7 108 82-203 52-159 (347)
169 COG2355 Zn-dependent dipeptida 21.8 1.8E+02 0.004 29.1 5.4 91 75-168 166-267 (313)
170 PRK03170 dihydrodipicolinate s 21.5 5.6E+02 0.012 24.6 8.8 92 79-177 22-120 (292)
171 cd00408 DHDPS-like Dihydrodipi 21.4 3.8E+02 0.0083 25.5 7.6 93 79-178 18-117 (281)
172 PF13651 EcoRI_methylase: Aden 21.1 1E+02 0.0022 31.0 3.5 44 115-162 125-168 (336)
173 cd01715 ETF_alpha The electron 21.0 5.3E+02 0.012 22.5 7.9 74 77-163 13-93 (168)
No 1
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=1.3e-77 Score=600.98 Aligned_cols=361 Identities=70% Similarity=1.058 Sum_probs=316.3
Q ss_pred cccccccccccccchhhhhhhhhhcccccccccccccCcccchHHhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHH
Q 016998 10 WIWDGLYYYPHFFGGLMLTAALLGVSTSYFGGIGVFSLPHLWSDCFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAK 89 (379)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~ 89 (379)
+.|.++++++|++||+|+++|+||+++.+++. ..|++|+..-..+++++.++.|||++||||++|.||+++|+||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk 77 (418)
T PLN02406 2 SISSAKYVASCLIGGLMLGASVLGLSLAGFGS----SLPYAWPDLGIFKKKKKKKPVRVYMDGCFDMMHYGHANALRQAR 77 (418)
T ss_pred CccccceeeehhhHHHHHHHHHHHHHhccccc----cccccchhhhhhccccCCCceEEEEcCeeCCCCHHHHHHHHHHH
Confidence 45678889999999999999999999998872 25777776222255566778899999999999999999999999
Q ss_pred HcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHHHHHHhhccCccEEEEcCCCCCCCCC
Q 016998 90 ALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDG 169 (379)
Q Consensus 90 ~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g 169 (379)
++||+|+|||++|+++..+|++|+++++||++++++|+|||+|++++||.++.+|+++++++++||++|||+||+...++
T Consensus 78 ~lGd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g 157 (418)
T PLN02406 78 ALGDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDG 157 (418)
T ss_pred HhCCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCccccCCc
Confidence 99999999999999998889999999999999999999999999999999999999888889999999999999998999
Q ss_pred chHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCCCchh-------hhccccccccccccccce
Q 016998 170 TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPRDPLR-------AIQSKDAHLSQFLPTSRR 242 (379)
Q Consensus 170 ~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 242 (379)
.+.|+..+..|++++++|++++|||+|++||+.++++++....+...+++++|+. .+.+..+.+++|++|+++
T Consensus 158 ~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 237 (418)
T PLN02406 158 TDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERSISDSHNHSSLQRQFSHGHSQFEDGGSGSGTRVSHFLPTSRR 237 (418)
T ss_pred hHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHhhhccccccccchhhhhhhhccccccccccCCCCCCCcccccccHHH
Confidence 9999999999999999999999999999999999999875333322333333331 122344667899999999
Q ss_pred eeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCc
Q 016998 243 IVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYV 322 (379)
Q Consensus 243 i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~V 322 (379)
|.||++|+.|.++.++||++|+||+||.||+++|++|+++||+|||||++|+.++++||.++|+|+++||+++|++||||
T Consensus 238 i~qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~V 317 (418)
T PLN02406 238 IVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYV 317 (418)
T ss_pred HHHHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CceEeCCCCCchHHHHHHcCCcEEEEcCCCCCCC----------CCCCCceEEEEeeeccee
Q 016998 323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSETNT----------PLTVSLQFLYLPLINYCI 374 (379)
Q Consensus 323 d~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~~~~----------~l~~~~evv~lp~~~~~~ 374 (379)
|+|++++|+..+.+++++++||++|||++|+... .......+..+|++.+++
T Consensus 318 D~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iS 379 (418)
T PLN02406 318 DEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDIT 379 (418)
T ss_pred cEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCc
Confidence 9999999999999999999999999998875321 222356677777776554
No 2
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=8.8e-79 Score=577.15 Aligned_cols=285 Identities=56% Similarity=0.939 Sum_probs=265.5
Q ss_pred CCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccc
Q 016998 61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI 140 (379)
Q Consensus 61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~ 140 (379)
++.++.|||++||||++|+||.++|+|||++|++|+||||+|++|..+||+|+|+.|||++|+++|||||+||+++||.+
T Consensus 4 ~~~~~~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvt 83 (358)
T KOG2803|consen 4 KKNRPVRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVT 83 (358)
T ss_pred cCCCceeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeec
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCC
Q 016998 141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPR 220 (379)
Q Consensus 141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~~ 220 (379)
+.++++ +|+||++|||+|.+..++|.|+|.+.|++|++++++||+|||||+|+.||+..++++. ++....+..+.
T Consensus 84 t~~~md----~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll~~~~~~-~~~~~~~~~e~ 158 (358)
T KOG2803|consen 84 TLEWMD----KYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLLKKRNHH-SDEVSSSQREL 158 (358)
T ss_pred cHHHHH----HhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhhHhhhhccCCC-ccccchhhhhh
Confidence 999985 7899999999999999999999999999999999999999999999999999998887 33322222222
Q ss_pred Cch----hhhccccccccccccccceeeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcch
Q 016998 221 DPL----RAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV 296 (379)
Q Consensus 221 ~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v 296 (379)
.++ ....++++++++|+|++++|+||++|+.|.|++++||++|.|||||+||+++|++|+.+||+|||||++|+++
T Consensus 159 ~~~~g~~~~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~v 238 (358)
T KOG2803|consen 159 SFSSGTDDDGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTV 238 (358)
T ss_pred hhccccCCcccCCccceeeeeecCccceEeecCCCCCCCCcEEEEcCchhhhccchHHHHHHHHhccCceEEEeecCcch
Confidence 222 3345778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHHHHcCCcEEEEcC
Q 016998 297 SEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGT 350 (379)
Q Consensus 297 ~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i~~~~~d~vv~G~ 350 (379)
|++||.++||||++||.++|++|||||+|++++|+..+.++++.++++.|++|.
T Consensus 239 neykgs~~PiMnl~ER~LsvlackyVdeVvvGaP~~v~s~~i~~~~~~~v~~g~ 292 (358)
T KOG2803|consen 239 NEYKGSNYPIMNLHERVLSVLACKYVDEVVVGAPYEVTSEFIKLFNIDKVAHGT 292 (358)
T ss_pred hhhccCCCccchHHHHHHHHhhhcccceEEEcCchhccHHHHHhcCceEEEEec
Confidence 999999999999999999999999999999999999999999999999999997
No 3
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=8.9e-67 Score=517.67 Aligned_cols=304 Identities=46% Similarity=0.778 Sum_probs=270.4
Q ss_pred CCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccc
Q 016998 61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI 140 (379)
Q Consensus 61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~ 140 (379)
++.++++||++||||++|.||+++|+||+++|+.|+||+++|+.+.+.|++|+++++||++++++|+|||+|+.++||..
T Consensus 7 ~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~ 86 (353)
T PTZ00308 7 KKPGTIRVWVDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEGYPYTT 86 (353)
T ss_pred CCCCcEEEEEEeecccCCHHHHHHHHHHHHhCCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEECCCCCc
Confidence 44557899999999999999999999999999999999999999988888899999999999999999999999889987
Q ss_pred cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCCC
Q 016998 141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLPR 220 (379)
Q Consensus 141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~~ 220 (379)
+.+|++ +++||+||||+||++|.+|.++|+.+++.|+++.++|++++|||+|++||+.++++++.... ....+
T Consensus 87 ~~~fI~----~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~~~~~~~~-~~~~~-- 159 (353)
T PTZ00308 87 RLEDLE----RLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTKSHLLKSV-DEVQL-- 159 (353)
T ss_pred hHHHHH----HhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhhccccccc-ccccc--
Confidence 777774 68999999999999999999999999999999999999999999999999999988763211 11111
Q ss_pred CchhhhccccccccccccccceeeccccCCCCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccC
Q 016998 221 DPLRAIQSKDAHLSQFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHR 300 (379)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~K 300 (379)
+ ...+.++..++|++++++|.||+.+..|.+++++||++|+||+||.||+++|++|+++||+|||||++|+++++.|
T Consensus 160 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~K 236 (353)
T PTZ00308 160 --E-SSLFPYTPTSHCLTTSRKIVQFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQK 236 (353)
T ss_pred --c-cccccCCCcceeecchhheeeccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhc
Confidence 1 1123445678899999999999999888888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHHHHcCCcEEEEcCCCCCC---------CCCCCCceEEEEeeec
Q 016998 301 GSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETN---------TPLTVSLQFLYLPLIN 371 (379)
Q Consensus 301 g~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~~~---------~~l~~~~evv~lp~~~ 371 (379)
|.++|+|+++||++++++|+|||+|++++|+.++.+++++++||++|||.|+..+ .....+.++..+|++.
T Consensus 237 g~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~ 316 (353)
T PTZ00308 237 GSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGC 316 (353)
T ss_pred CCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCC
Confidence 9778999999999999999999999999999999999999999999999987531 1234567889999987
Q ss_pred cee
Q 016998 372 YCI 374 (379)
Q Consensus 372 ~~~ 374 (379)
++|
T Consensus 317 ~~s 319 (353)
T PTZ00308 317 DLT 319 (353)
T ss_pred Ccc
Confidence 765
No 4
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.97 E-value=5.2e-31 Score=233.30 Aligned_cols=137 Identities=61% Similarity=1.005 Sum_probs=127.6
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ 142 (379)
++|||+.|+||++|.||+++|++|+++| |+|+|||++|+.+..+|++|+++++||.+++++|+|||+|+.+.|+..+.
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~~ 81 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTTP 81 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCChH
Confidence 5689999999999999999999999999 99999999999988888889999999999999999999999998988777
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccc
Q 016998 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME 205 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~ 205 (379)
+|++ +++||++++|+||..+..+.+.|+.+++.|+++.+++++++|||.|++||++...
T Consensus 82 ~~i~----~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~ 140 (150)
T cd02174 82 EFLD----KYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYR 140 (150)
T ss_pred HHHH----HhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHH
Confidence 8775 6799999999999988777788999999999999999999999999999997644
No 5
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.97 E-value=3.7e-30 Score=245.12 Aligned_cols=142 Identities=43% Similarity=0.766 Sum_probs=128.5
Q ss_pred cCCCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCC
Q 016998 60 CGKKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAP 137 (379)
Q Consensus 60 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p 137 (379)
+...++++||++|+||++|.||+++|++|+++| ++|+|||++|+.+...|++|+|+++||+++|++|+|||+|++++|
T Consensus 22 ~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeVV~~aP 101 (294)
T PLN02413 22 SPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEVIPDAP 101 (294)
T ss_pred CCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEEeeCCC
Confidence 355778899999999999999999999999996 799999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHhhccCccEEEEcCCCCCCC--CCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccc
Q 016998 138 YAITEQFMNRLFNEHKIDYIIHGDDPCLLP--DGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSME 205 (379)
Q Consensus 138 ~~~t~efl~~ll~~~~~d~VV~GdD~~~g~--~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~ 205 (379)
|..+++|++ +++||++|||++..... .+.+.|+.+++.|++..++|++++|||+|++||++.+.
T Consensus 102 ~~~t~efI~----~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~ 167 (294)
T PLN02413 102 WVITQEFLD----KHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYN 167 (294)
T ss_pred ccccHHHHH----HhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHH
Confidence 999999986 67999999998654322 45678999999999999999999999999999997643
No 6
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.97 E-value=4.8e-30 Score=222.14 Aligned_cols=132 Identities=44% Similarity=0.714 Sum_probs=117.5
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhc-cCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIA-NKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQ 143 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~-~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~e 143 (379)
+++||+.||||++|+||+++|+||+++||+++|.+.+|+.+.. .|++|+++.+||++++++|+|||+|++++||+++.+
T Consensus 1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~ 80 (140)
T COG0615 1 MKRVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE 80 (140)
T ss_pred CcEEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence 3579999999999999999999999999998888888888765 566999999999999999999999999999999888
Q ss_pred HHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCC------CCHHHHHHHHHh
Q 016998 144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG------VSSTDIVGRILS 202 (379)
Q Consensus 144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~------VSST~Ir~rI~~ 202 (379)
+++ +++||+|++|+||+ +..+...|+..+ .|.+.+++|+++ +||++|.+++..
T Consensus 81 ~i~----~~k~Div~lG~D~~-~d~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 81 DIE----EYKPDIVVLGDDQK-FDEDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred HHH----HhCCCEEEECCCCc-CChHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 875 68999999999999 555566676666 999999999987 899999999863
No 7
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.96 E-value=5.9e-30 Score=242.79 Aligned_cols=154 Identities=41% Similarity=0.639 Sum_probs=138.4
Q ss_pred CCCCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCcc
Q 016998 62 KKKRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYA 139 (379)
Q Consensus 62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~ 139 (379)
..++.|||++|.||++|+||++.|+||++++ -+|+|||.+|+...+.||+.+|+.+||++.|++|+|||+|+.++||.
T Consensus 60 ~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~APW~ 139 (348)
T KOG2804|consen 60 TDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAPWT 139 (348)
T ss_pred CCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCCcc
Confidence 5789999999999999999999999999998 47999999999988999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhccccccccccccCCCCC
Q 016998 140 ITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSSMEDTKACEDHNNASLP 219 (379)
Q Consensus 140 ~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~~~~~~~~~~~~~~~~~ 219 (379)
++.+|++ ++++|+|+|.+-+..+.+..|.|+.+|+.|++++.+||+||||++|+.||...+.. ..++.|+
T Consensus 140 lt~EFL~----~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~------YvrRNL~ 209 (348)
T KOG2804|consen 140 LTPEFLE----KHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDV------YVRRNLA 209 (348)
T ss_pred ccHHHHH----hcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHH------HHHhhhc
Confidence 9999986 68999999999887766666779999999999999999999999999999866432 3455666
Q ss_pred CCchhh
Q 016998 220 RDPLRA 225 (379)
Q Consensus 220 ~~~~~~ 225 (379)
|.+++.
T Consensus 210 RGys~k 215 (348)
T KOG2804|consen 210 RGYSAK 215 (348)
T ss_pred ccCCHH
Confidence 666543
No 8
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.96 E-value=9.6e-29 Score=248.63 Aligned_cols=146 Identities=33% Similarity=0.627 Sum_probs=133.2
Q ss_pred HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccE
Q 016998 54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDE 131 (379)
Q Consensus 54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~ 131 (379)
||+....++...++||++|+||++|.||+++|++|+++||+|+|||++|+.+..+|+ +|+|+++||.+++++|+|||+
T Consensus 240 qf~~g~~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lGd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~ 319 (418)
T PLN02406 240 QFSNGKGPGPDARIVYIDGAFDLFHAGHVEILRLARALGDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDE 319 (418)
T ss_pred HHhccCCCCCCCeEEEECCeeccCCHHHHHHHHHHHHhCCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccE
Confidence 777776666778899999999999999999999999999999999999999988887 899999999999999999999
Q ss_pred EEeCCCccccHHHHHHHhhccCccEEEEcCCCC---CCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPC---LLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 132 Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~---~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
|++++||..+++|++ +++||++|||+||. +..++.|.|...++.|+++.+++++++|||+|++||+..
T Consensus 320 VVi~ap~~~~~~~i~----~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~ 390 (418)
T PLN02406 320 VIIGAPWEVSKDMIT----TFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVAN 390 (418)
T ss_pred EEeCCCCCCCHHHHH----HhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHh
Confidence 999999999999886 67999999999874 233457889999999999999999999999999999964
No 9
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.96 E-value=2e-28 Score=217.21 Aligned_cols=135 Identities=40% Similarity=0.723 Sum_probs=123.2
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ 142 (379)
.++||+.|+||++|.||+++|++|+++||+|+|||++|+.+...|+ +|+++++||++++++|+|||+|+...|+.++.
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~ 81 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK 81 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence 4589999999999999999999999999999999999999887776 69999999999999999999999988887777
Q ss_pred HHHHHHhhccCccEEEEcCCCCCC--CCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 143 QFMNRLFNEHKIDYIIHGDDPCLL--PDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~GdD~~~g--~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
+|++ +++||++++|.||... ..+.+.|+.+++.|++..+++++++|||+|++||+..
T Consensus 82 ~~~~----~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~ 140 (152)
T cd02173 82 ELIE----HFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKN 140 (152)
T ss_pred HHHH----HhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 7775 6899999999999764 3466789999999999999999999999999999865
No 10
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.95 E-value=1.3e-27 Score=210.16 Aligned_cols=134 Identities=25% Similarity=0.365 Sum_probs=117.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef 144 (379)
.++|+++|+||++|.||+++|++|+++|+.++|++.+|+.+.+.+.+|+++.+||.+++++++|||.++.. |+...++|
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~f 82 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALEI 82 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHHH
Confidence 46799999999999999999999999999999999999877655558999999999999999999999983 55445677
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCC-----chHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 145 MNRLFNEHKIDYIIHGDDPCLLPDG-----TDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 145 l~~ll~~~~~d~VV~GdD~~~g~~g-----~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
++ +++++++|+|+||+||.++ .++++.+++.|....+.+++++|||+|++||+..
T Consensus 83 i~----~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~sts~li~~i~~~ 142 (144)
T cd02172 83 ID----ALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFTGEIVFSSSALINRIFDE 142 (144)
T ss_pred HH----HhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEecCCCcchHHHHHHHHhh
Confidence 75 5899999999999999876 7889999988776555599999999999999754
No 11
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.95 E-value=3.3e-28 Score=215.44 Aligned_cols=117 Identities=34% Similarity=0.634 Sum_probs=106.6
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCc
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 333 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~ 333 (379)
.+.||++|+||+||.||+++|++|+++| |+|||||++|++++++||+ |+|+++||++++++|+|||+|++++|+.+
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~--pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~ 79 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP--PVMTEEERYEAVRHCKWVDEVVEGAPYVT 79 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC--CcCCHHHHHHHHHhcCCCCeEEECCCCCC
Confidence 3679999999999999999999999999 9999999999999999985 99999999999999999999999999999
Q ss_pred hHHHHHHcCCcEEEEcCCCCCC-------CCCCCCceEEEEeeeccee
Q 016998 334 TKDMITTFNICLVVHGTVSETN-------TPLTVSLQFLYLPLINYCI 374 (379)
Q Consensus 334 ~~~~i~~~~~d~vv~G~d~~~~-------~~l~~~~evv~lp~~~~~~ 374 (379)
+.+++++++||++++|+||... +.+....+++++|++.++|
T Consensus 80 ~~~~i~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~S 127 (150)
T cd02174 80 TPEFLDKYKCDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVS 127 (150)
T ss_pred hHHHHHHhCCCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCC
Confidence 9999999999999999998642 1334578999999998764
No 12
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.95 E-value=2.3e-27 Score=205.79 Aligned_cols=133 Identities=44% Similarity=0.675 Sum_probs=119.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef 144 (379)
+++++++|+||++|.||+++|++|+++++.++|++++|+.+.+.|++|+++.+||.+++++|+|||.++...|++ |
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~----~ 76 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWS----Y 76 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCC----H
Confidence 468999999999999999999999999999999999998776666679999999999999999999999877765 4
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEec--cCCCCCHHHHHHHHHh
Q 016998 145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK--RTEGVSSTDIVGRILS 202 (379)
Q Consensus 145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~--r~~~VSST~Ir~rI~~ 202 (379)
++.+ .++++|++|+|+||+||.++++.++.+++.|....+. ++.++|||+||++|+.
T Consensus 77 ~~~l-~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 77 FKPL-EELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred hHHH-HHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 4432 3578999999999999999999999999999988888 7889999999999963
No 13
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.95 E-value=4.3e-28 Score=215.16 Aligned_cols=119 Identities=55% Similarity=0.858 Sum_probs=107.4
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK 335 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~ 335 (379)
+++||++|+||+||.||+++|++|+++||+|||||++|+++++.||+++|+|+++||++++++|+|||+|++++|+.++.
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lgd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~~ 81 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVITK 81 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcCCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcchH
Confidence 68999999999999999999999999999999999999999999987679999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEcCCCCCCC---------CCCCCceEEEEeeeccee
Q 016998 336 DMITTFNICLVVHGTVSETNT---------PLTVSLQFLYLPLINYCI 374 (379)
Q Consensus 336 ~~i~~~~~d~vv~G~d~~~~~---------~l~~~~evv~lp~~~~~~ 374 (379)
+++++++||++++|.+|..+. .+.....+..+|++.++|
T Consensus 82 ~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~S 129 (152)
T cd02173 82 ELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLT 129 (152)
T ss_pred HHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCC
Confidence 999999999999999986531 233467788888877665
No 14
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.95 E-value=2.5e-27 Score=235.78 Aligned_cols=146 Identities=32% Similarity=0.612 Sum_probs=131.1
Q ss_pred HhhhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccE
Q 016998 54 CFHKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDE 131 (379)
Q Consensus 54 ~~~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~ 131 (379)
+|+.+..++.+.++||+.|+||++|.||+++|++|+++||+|+|||++|+.+...|+ .|+++++||.+++++|+|||.
T Consensus 181 ~~~~~~~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lgd~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~ 260 (353)
T PTZ00308 181 QFSNNRSPKPGDRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDE 260 (353)
T ss_pred eccccCCCCCCCeEEEECCccCCCCHHHHHHHHHHHHhCCEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCe
Confidence 566555444556899999999999999999999999999999999999999988887 699999999999999999999
Q ss_pred EEeCCCccccHHHHHHHhhccCccEEEEcCCCCC--CCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCL--LPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 132 Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~--g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
|++.+|+..+.+|++ +++||++|+|+|+.. ..++.+.|+..+..|++..+++++++|||+|++||+..
T Consensus 261 Vvi~~~~~~~~~~i~----~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~ 330 (353)
T PTZ00308 261 VVIGAPFDVTKEVID----SLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKN 330 (353)
T ss_pred EEEcCCCCChHHHHH----HhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHh
Confidence 999889888888875 679999999999975 55567889999999999999999999999999999854
No 15
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.94 E-value=8.3e-27 Score=222.22 Aligned_cols=121 Identities=31% Similarity=0.527 Sum_probs=105.4
Q ss_pred CCCCCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCC
Q 016998 252 PGPNARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGA 329 (379)
Q Consensus 252 ~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~ 329 (379)
+.....+||++|+||+||.||+++|++||++| |+|||||++|+++++.||+ |+|+++||+++|++|||||+|++++
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGr--PIm~~~ER~e~V~acKyVDeVV~~a 100 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGK--TVMTEDERYESLRHCKWVDEVIPDA 100 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCC--CCCCHHHHHHHHHhcccccEEeeCC
Confidence 34456789999999999999999999999996 7999999999999999994 9999999999999999999999999
Q ss_pred CCCchHHHHHHcCCcEEEEcCCCCCC---------CCCCCCceEEEEeeeccee
Q 016998 330 PWEVTKDMITTFNICLVVHGTVSETN---------TPLTVSLQFLYLPLINYCI 374 (379)
Q Consensus 330 ~~~~~~~~i~~~~~d~vv~G~d~~~~---------~~l~~~~evv~lp~~~~~~ 374 (379)
||.++.+++++++||++|+|++...+ ..+...+.+..+|++.++|
T Consensus 101 P~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvS 154 (294)
T PLN02413 101 PWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGIS 154 (294)
T ss_pred CccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcC
Confidence 99999999999999999999632211 1233457888999987664
No 16
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.94 E-value=6.1e-27 Score=202.80 Aligned_cols=97 Identities=38% Similarity=0.700 Sum_probs=91.3
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHH
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM 337 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~ 337 (379)
.|+++|+||+||+||+++|++||++||+|+|.+..|+++...|++ .|+|+.+||++++++|||||+|++++||..+.++
T Consensus 3 rV~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~-~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~~ 81 (140)
T COG0615 3 RVWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKR-KPIMPEEQRAEVLESLRYVDEVILGAPWDIKFED 81 (140)
T ss_pred EEEEeeEEEEechhHHHHHHHHHHhCCeEEEEEeccHHHHHhcCC-CCCCCHHHHHHHHHcCcchheeeeCCccccChHH
Confidence 499999999999999999999999999999999999998875554 7999999999999999999999999999998999
Q ss_pred HHHcCCcEEEEcCCCCCC
Q 016998 338 ITTFNICLVVHGTVSETN 355 (379)
Q Consensus 338 i~~~~~d~vv~G~d~~~~ 355 (379)
+++++||++++|+||..+
T Consensus 82 i~~~k~Div~lG~D~~~d 99 (140)
T COG0615 82 IEEYKPDIVVLGDDQKFD 99 (140)
T ss_pred HHHhCCCEEEECCCCcCC
Confidence 999999999999999865
No 17
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.94 E-value=6.8e-26 Score=199.30 Aligned_cols=130 Identities=35% Similarity=0.528 Sum_probs=109.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCccccH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITE 142 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ 142 (379)
.++|+++|+||++|.||+++|++|+++|+.++|++++|+.....++ +|+++.+||.+++++|+|||+++...+. ..+
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~~ 89 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TPE 89 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CHH
Confidence 4589999999999999999999999999999999999998654444 6899999999999999999999983322 235
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhC-CeEEEeccCCCCCHHHHHHHHH
Q 016998 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV-GRYKQIKRTEGVSSTDIVGRIL 201 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~-g~~~~v~r~~~VSST~Ir~rI~ 201 (379)
+|++ +++++++|+|+||++... ..++.+++. |++..+++++++|||+||+||+
T Consensus 90 ~fi~----~l~~~~vv~G~d~~~~~~--~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~ 143 (144)
T TIGR02199 90 ELIG----ELKPDILVKGGDYKVETL--VGAELVESYGGQVVLLPFVEGRSTTAIIEKIL 143 (144)
T ss_pred HHHH----HhCCCEEEECCCCCCCcc--hhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHh
Confidence 7765 689999999999988432 235556655 6999999999999999999996
No 18
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.93 E-value=2.4e-25 Score=190.94 Aligned_cols=123 Identities=35% Similarity=0.508 Sum_probs=102.6
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHHHHH
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNR 147 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~efl~~ 147 (379)
|++.|+||++|.||+++|++|+++|+.++||+++|+.....+.+|+++.+||++++++|+|||.++...|+ ++|++.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~---~~f~~~ 77 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSW---EQKKQD 77 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCc---cchHHH
Confidence 57999999999999999999999999999999999866544458999999999999999999999775544 345544
Q ss_pred HhhccCccEEEEcCCCCCCCCCchHHHHHHhC--CeEEEeccCCCCCHHHHHHHH
Q 016998 148 LFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV--GRYKQIKRTEGVSSTDIVGRI 200 (379)
Q Consensus 148 ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~--g~~~~v~r~~~VSST~Ir~rI 200 (379)
+ +++++|++++|+||. ++++.+++. .++..+++++++|||.||+.|
T Consensus 78 l-~~~~~~~vv~G~D~~------g~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 78 I-IDFNIDVFVMGDDWE------GKFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred H-HHcCCCEEEECCCcc------chHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 3 579999999999992 455666644 467788899999999999864
No 19
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.93 E-value=6.7e-25 Score=188.72 Aligned_cols=128 Identities=32% Similarity=0.496 Sum_probs=108.0
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQF 144 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~ef 144 (379)
|++|+++|+||++|.||+.+|++|+++++++++++++|+.....+.++++|.+||++++++++|||+++...++ ++|
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~---~~f 77 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNW---EQK 77 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCc---cCh
Confidence 46899999999999999999999999999999999888743222336899999999999999999999753333 345
Q ss_pred HHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 016998 145 MNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS 202 (379)
Q Consensus 145 l~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~ 202 (379)
++.+ ++++++++++|+|| .++++.+++.|++..++++.++|||.||++|..
T Consensus 78 ~~~~-~~l~~~~vv~G~d~------~g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 78 IEDI-KKYNVDVFVMGDDW------EGKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHH-HHhCCCEEEECCCC------cchHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 5543 67899999999999 356788999999999999999999999999863
No 20
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=200.47 Aligned_cols=93 Identities=38% Similarity=0.657 Sum_probs=90.7
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD 336 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~ 336 (379)
..|+++|+||.+|.||.+.|++||++||+|||||++|+.+..+||+ |+|+.+||.+++.+||||||||.++|+-.+.+
T Consensus 9 ~rVw~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGp--PV~t~eERy~~v~~ikWVDEVV~~APyvtt~~ 86 (358)
T KOG2803|consen 9 VRVWADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGP--PVFTDEERYEMVKAIKWVDEVVEGAPYVTTLE 86 (358)
T ss_pred eeEEeccchhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCC--CcccHHHHHHHHhhcchhhhhhcCCCeeccHH
Confidence 3599999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEcCC
Q 016998 337 MITTFNICLVVHGTV 351 (379)
Q Consensus 337 ~i~~~~~d~vv~G~d 351 (379)
+++++++|++|||+|
T Consensus 87 ~md~y~cd~vvHGdD 101 (358)
T KOG2803|consen 87 WMDKYGCDYVVHGDD 101 (358)
T ss_pred HHHHhCCeEEEeCCc
Confidence 999999999999987
No 21
>PRK07143 hypothetical protein; Provisional
Probab=99.88 E-value=1e-21 Score=189.98 Aligned_cols=137 Identities=16% Similarity=0.271 Sum_probs=111.1
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccC-CCCCCCHHHHHHHHhcCccccEEEeCCCcc--c
Q 016998 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANK-GPPVLSMEERLALVSGLKWVDEVIANAPYA--I 140 (379)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K-~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~--~ 140 (379)
+.+.|+++|+|||+|.||+++|++|++.++.++|...++|.....+ .+++++.+||.++++++ ++|.++. .||+ +
T Consensus 14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~-~~F~~~~ 91 (279)
T PRK07143 14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIIL-LDFNEEL 91 (279)
T ss_pred CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEE-eCCCHHH
Confidence 3457999999999999999999999999887777666665543222 25699999999999998 7888876 3442 1
Q ss_pred ----cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEecc----CCCCCHHHHHHHHHhc
Q 016998 141 ----TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKR----TEGVSSTDIVGRILSS 203 (379)
Q Consensus 141 ----t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r----~~~VSST~Ir~rI~~~ 203 (379)
.++|++.++. ++++.||+|+||+||.++.|+++.|++.+ .+..++. ...||||.||+.|.++
T Consensus 92 a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G 162 (279)
T PRK07143 92 QNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKNASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFG 162 (279)
T ss_pred hCCCHHHHHHHHHh-cCCCEEEECCCcccCCCCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcC
Confidence 2589988764 89999999999999999999999999988 5655543 3469999999999866
No 22
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.87 E-value=6.7e-22 Score=179.87 Aligned_cols=134 Identities=25% Similarity=0.379 Sum_probs=105.5
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEccchhhh--ccCC-CCCCCHHHHHHHHhcCccccEEEeCCCcc
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEII--ANKG-PPVLSMEERLALVSGLKWVDEVIANAPYA 139 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~--~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~ 139 (379)
|+++|+|||+|.||+++|++|+++|+ .+++++.+++... ..+. .++++.++|++++++++ ||+++. .|++
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~-~~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLV-LPFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEE-eCCC
Confidence 78999999999999999999999975 3555555555432 2222 68999999999999995 999997 3442
Q ss_pred -----cc-HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-----eEEEecc----CCCCCHHHHHHHHHhc
Q 016998 140 -----IT-EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILSS 203 (379)
Q Consensus 140 -----~t-~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-----~~~~v~r----~~~VSST~Ir~rI~~~ 203 (379)
.+ ++|+++++.+.+++++|+|+||+||.++.++.+.+++.+ ++..+++ +..||||.||+.|.++
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G 158 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEG 158 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhC
Confidence 12 478888776669999999999999999999888776543 3556665 3579999999999865
No 23
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=5.2e-22 Score=196.00 Aligned_cols=119 Identities=29% Similarity=0.442 Sum_probs=111.1
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchH
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTK 335 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~ 335 (379)
.++|++.|+||++|.||+.+|++||++||.||||++||.++++.||..+|+.+++.|+..+.++..||.|++++ ++.+.
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~-edTP~ 410 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFD-EDTPE 410 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEec-CCCHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999997 46679
Q ss_pred HHHHHcCCcEEEEcCCCCCCC------CCCCCceEEEEeeecceee
Q 016998 336 DMITTFNICLVVHGTVSETNT------PLTVSLQFLYLPLINYCIC 375 (379)
Q Consensus 336 ~~i~~~~~d~vv~G~d~~~~~------~l~~~~evv~lp~~~~~~~ 375 (379)
++|+.++||++|+|.||..++ -...|.++..+||-++||-
T Consensus 411 ~LI~~~~PdilVKGgDy~~~~i~g~~~v~~~GG~v~~i~f~~g~ST 456 (467)
T COG2870 411 ELIEAVKPDILVKGGDYKIEKIVGADIVEAYGGEVLLIPFEEGKST 456 (467)
T ss_pred HHHHHhCcceEEccCCCChhhccchhhhhhcCCeEEEEecccCCcH
Confidence 999999999999999999873 3446899999999999973
No 24
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.86 E-value=3e-21 Score=198.95 Aligned_cols=133 Identities=30% Similarity=0.454 Sum_probs=113.7
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCcccc
Q 016998 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT 141 (379)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t 141 (379)
..++|++.|+||++|.||+++|++|+++|++++||+++|+.+...|+ +|+++.+||.+++++|++||+|++.. ....
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~~ 417 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDTP 417 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCCH
Confidence 35789999999999999999999999999999999999998876675 68999999999999999999998632 2233
Q ss_pred HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 016998 142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS 202 (379)
Q Consensus 142 ~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~ 202 (379)
++|+ ++++||++++|+||.+... .+.+...+.+|+++.+++++++|||+|++||++
T Consensus 418 ~~~~----~~~~~d~vv~G~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~~ 473 (473)
T PRK11316 418 QRLI----AEILPDLLVKGGDYKPEEI-AGSKEVWANGGEVKVLNFEDGCSTTNIIKKIRQ 473 (473)
T ss_pred HHHH----HHhCCCEEEECCCCCCCcc-ccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHhC
Confidence 4555 4678999999999987643 345666778899999999999999999999963
No 25
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.86 E-value=3.6e-21 Score=188.57 Aligned_cols=135 Identities=24% Similarity=0.371 Sum_probs=107.2
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCe-----EEEEEccchhhh--ccCC-CCCCCHHHHHHHHhcCccccEEEeCCCc
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDE-----LVVGVVSDEEII--ANKG-PPVLSMEERLALVSGLKWVDEVIANAPY 138 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~-----LiVgV~sd~~i~--~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~ 138 (379)
.|+++|+|||+|.||+++|++|+++|+. +++.+.+++... +.+. +++++.+||.+++++++ ||.++. .||
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~-~~F 92 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLV-LPF 92 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEE-ecC
Confidence 7999999999999999999999999864 255554444321 1222 67999999999999995 999987 455
Q ss_pred c-----c-cHHHHHHHh-hccCccEEEEcCCCCCCCCCchHHHHHHhCC-----eEEEecc----CCCCCHHHHHHHHHh
Q 016998 139 A-----I-TEQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKR----TEGVSSTDIVGRILS 202 (379)
Q Consensus 139 ~-----~-t~efl~~ll-~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-----~~~~v~r----~~~VSST~Ir~rI~~ 202 (379)
+ . .++|+++++ ++++++++|+|+||+||.++.++++.+++.+ ++..++. .+.||||.||+.|.+
T Consensus 93 ~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~ 172 (305)
T PRK05627 93 DEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALAE 172 (305)
T ss_pred CHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHHc
Confidence 3 1 248998844 5699999999999999999999999988863 3444443 367999999999986
Q ss_pred c
Q 016998 203 S 203 (379)
Q Consensus 203 ~ 203 (379)
+
T Consensus 173 G 173 (305)
T PRK05627 173 G 173 (305)
T ss_pred C
Confidence 6
No 26
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=99.84 E-value=2.1e-21 Score=184.76 Aligned_cols=93 Identities=39% Similarity=0.754 Sum_probs=88.7
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCch
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT 334 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~ 334 (379)
-.||.+|.|||||.||.+.|++||+++ -||||||.+|+...+.|| +.+|+..||++.|..|||||+|+.++||.++
T Consensus 64 VRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG--~TVm~e~ERyE~lrHCryVDEVi~~APW~lt 141 (348)
T KOG2804|consen 64 VRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG--RTVMNENERYEALRHCRYVDEVIPNAPWTLT 141 (348)
T ss_pred eEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC--ceecChHHHHHHhhhhhhhhhhccCCCcccc
Confidence 469999999999999999999999987 599999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEcCC
Q 016998 335 KDMITTFNICLVVHGTV 351 (379)
Q Consensus 335 ~~~i~~~~~d~vv~G~d 351 (379)
.+||++|+||+|+|.+.
T Consensus 142 ~EFL~~HKIDfVAHDdI 158 (348)
T KOG2804|consen 142 PEFLEKHKIDFVAHDDI 158 (348)
T ss_pred HHHHHhcccceeeccCc
Confidence 99999999999999754
No 27
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.84 E-value=2.2e-20 Score=164.25 Aligned_cols=118 Identities=31% Similarity=0.464 Sum_probs=103.3
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCch
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT 334 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~ 334 (379)
++++|++.|.||.+|.||+.+|++|+++++.++|||+.|+...+.|+...|+++++||.+++++|++||.|+++++. ..
T Consensus 10 ~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~-~~ 88 (144)
T TIGR02199 10 GKKIVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDED-TP 88 (144)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHhCCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCC-CH
Confidence 46889999999999999999999999999999999999998876666546899999999999999999999998654 46
Q ss_pred HHHHHHcCCcEEEEcCCCCCCCC------CCCCceEEEEeeecce
Q 016998 335 KDMITTFNICLVVHGTVSETNTP------LTVSLQFLYLPLINYC 373 (379)
Q Consensus 335 ~~~i~~~~~d~vv~G~d~~~~~~------l~~~~evv~lp~~~~~ 373 (379)
.+|++.++++.+|.|.||..+.. -..|++++++|++...
T Consensus 89 ~~fi~~l~~~~vv~G~d~~~~~~~~~~~~~~~g~~v~~~~~~~~i 133 (144)
T TIGR02199 89 EELIGELKPDILVKGGDYKVETLVGAELVESYGGQVVLLPFVEGR 133 (144)
T ss_pred HHHHHHhCCCEEEECCCCCCCcchhHHHHHHcCCEEEEEeCCCCc
Confidence 99999999999999999876532 1257899999998753
No 28
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.83 E-value=7.7e-21 Score=169.60 Aligned_cols=131 Identities=26% Similarity=0.430 Sum_probs=93.9
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEccchhhhcc--CC-CCCCCHHHHHHHHhcCccccEEEe
Q 016998 63 KKRVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEIIAN--KG-PPVLSMEERLALVSGLKWVDEVIA 134 (379)
Q Consensus 63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~~~--K~-~pi~t~eER~~~l~~~~~VD~Vv~ 134 (379)
...+.++++|+|||+|+||++||++|.+.+. .+++.+.++|..... +. ..+++.+||.++++.+ +||+++.
T Consensus 3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~ 81 (157)
T PF06574_consen 3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIV 81 (157)
T ss_dssp T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEE
T ss_pred CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEE
Confidence 3456899999999999999999999999972 367777777653332 22 5699999999999997 8998876
Q ss_pred CCCcc--cc----HHHHHHHhh-ccCccEEEEcCCCCCCCCCchHHHHHHhCCe-----EEEecc----CCCCCHHH
Q 016998 135 NAPYA--IT----EQFMNRLFN-EHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR----TEGVSSTD 195 (379)
Q Consensus 135 ~~p~~--~t----~efl~~ll~-~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~-----~~~v~r----~~~VSST~ 195 (379)
.||+ +. ++|++.++. ++++..||+|+||+||.++.++.+.|++.++ +..++. ...||||+
T Consensus 82 -~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISStr 157 (157)
T PF06574_consen 82 -IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISSTR 157 (157)
T ss_dssp -E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHHH
T ss_pred -ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCCC
Confidence 3332 21 499998775 8999999999999999999999999999884 344443 24699985
No 29
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.83 E-value=4.2e-20 Score=179.64 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=106.4
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcC-----CeEEEEEccchhhhcc--CCCCCCCHHHHHHHHhcCccccEEEeCCCcc-
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALG-----DELVVGVVSDEEIIAN--KGPPVLSMEERLALVSGLKWVDEVIANAPYA- 139 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~-----d~LiVgV~sd~~i~~~--K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~- 139 (379)
++++|+|||+|.||+++|++|++.| ...++++.++|..... +.+++++.+||.++++++ +||.++. .||+
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~-~~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLV-VVFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEE-eCCCH
Confidence 5899999999999999999999876 3467777777653222 224499999999999998 8999887 4442
Q ss_pred ----cc-HHHHHHHh-hccCccEEEEcCCCCCCCCCchHHHHHHhCCeE-----EEecc---CCCCCHHHHHHHHHhc
Q 016998 140 ----IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRY-----KQIKR---TEGVSSTDIVGRILSS 203 (379)
Q Consensus 140 ----~t-~efl~~ll-~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~-----~~v~r---~~~VSST~Ir~rI~~~ 203 (379)
.+ ++|+++++ ++++++.||+|+||+||.++.++.+.|++.++. ..++. .+.||||.||+.|.++
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 11 38998876 459999999999999999999999999998752 22222 3579999999999976
No 30
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.82 E-value=5.7e-20 Score=157.61 Aligned_cols=111 Identities=37% Similarity=0.587 Sum_probs=95.5
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHHH
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMI 338 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~i 338 (379)
|++.|+||++|.||+++|++|+++|++++|||++|+....++. .|+++++||.+.+++|+|||.|+++.++....+.+
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~~~~iv~v~~d~~~~~~~~--~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLGDYLIVALSTDEFNLQKQK--KAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcCCEEEEEEechHHHhhcCC--CCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5788999999999999999999999999999999987654433 69999999999999999999998888878777888
Q ss_pred HHcCCcEEEEcCCCCCC-CCCC--CCceEEEEeeec
Q 016998 339 TTFNICLVVHGTVSETN-TPLT--VSLQFLYLPLIN 371 (379)
Q Consensus 339 ~~~~~d~vv~G~d~~~~-~~l~--~~~evv~lp~~~ 371 (379)
+.++||++++|+||..+ +.+. .+.+++++|+..
T Consensus 79 ~~~~~~~vv~G~D~~g~~~~l~~~~~~~v~~v~~~~ 114 (125)
T TIGR01518 79 IDFNIDVFVMGDDWEGKFDFLKDECPLKVVYLPRTE 114 (125)
T ss_pred HHcCCCEEEECCCccchHHHHhhccCcEEEEeCCCC
Confidence 99999999999999654 2221 368899999754
No 31
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.80 E-value=2.4e-19 Score=184.91 Aligned_cols=120 Identities=28% Similarity=0.381 Sum_probs=107.1
Q ss_pred CCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCc
Q 016998 254 PNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEV 333 (379)
Q Consensus 254 ~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~ 333 (379)
.++++|++.|+||++|.||+++|++|+++||+|+|||++|+.+++.||.++|+++++||.+.+++|++||+|+..+ +..
T Consensus 338 ~~~~iv~~~G~fD~~H~GH~~~l~~a~~~~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~ 416 (473)
T PRK11316 338 RGEKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT 416 (473)
T ss_pred cCCeEEEEecccccCCHHHHHHHHHHHHhCCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence 3469999999999999999999999999999999999999999888987789999999999999999999998876 457
Q ss_pred hHHHHHHcCCcEEEEcCCCCCCC------CCCCCceEEEEeeeccee
Q 016998 334 TKDMITTFNICLVVHGTVSETNT------PLTVSLQFLYLPLINYCI 374 (379)
Q Consensus 334 ~~~~i~~~~~d~vv~G~d~~~~~------~l~~~~evv~lp~~~~~~ 374 (379)
..+++++++||++++|+||..+. ..+.+++++++||+.++|
T Consensus 417 ~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 463 (473)
T PRK11316 417 PQRLIAEILPDLLVKGGDYKPEEIAGSKEVWANGGEVKVLNFEDGCS 463 (473)
T ss_pred HHHHHHHhCCCEEEECCCCCCCccccHHHHHHcCCEEEEEcCCCCcC
Confidence 88999999999999999986542 233579999999987764
No 32
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.79 E-value=4.2e-19 Score=152.66 Aligned_cols=114 Identities=32% Similarity=0.533 Sum_probs=96.8
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD 336 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~ 336 (379)
++|++.|+||++|.||..+|++|+++++.++|+|++|+.. ..+++ .|++|++||++++++|++||+|+...++....+
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~v~v~~d~~~-~~~~~-~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~~ 79 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLERAKALGDKLIVAVSTDEFN-AGKGK-KAVIPYEQRAEILESIRYVDLVIPETNWEQKIE 79 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHHHHHhCCEEEEEEeccHhH-HhcCC-CCCCCHHHHHHHHHcCCccCEEecCCCccChHH
Confidence 5799999999999999999999999999999999999743 33443 699999999999999999999987666666677
Q ss_pred HHHHcCCcEEEEcCCCCCC-CCCCCCceEEEEeeecc
Q 016998 337 MITTFNICLVVHGTVSETN-TPLTVSLQFLYLPLINY 372 (379)
Q Consensus 337 ~i~~~~~d~vv~G~d~~~~-~~l~~~~evv~lp~~~~ 372 (379)
.++.++++++++|.||..+ +.+...++++++|+...
T Consensus 80 ~~~~l~~~~vv~G~d~~g~~~~l~~~~~v~~~~~~~~ 116 (129)
T cd02171 80 DIKKYNVDVFVMGDDWEGKFDFLKEYCEVVYLPRTKG 116 (129)
T ss_pred HHHHhCCCEEEECCCCcchHHHHHhCcEEEEeCCCCC
Confidence 7799999999999999755 44555578999997544
No 33
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=3.4e-19 Score=176.15 Aligned_cols=131 Identities=36% Similarity=0.504 Sum_probs=115.2
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcCccccEEEeCCCccccHH
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG--PPVLSMEERLALVSGLKWVDEVIANAPYAITEQ 143 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~e 143 (379)
+.|+|-||||.+|.||..+|.||+++||.|+||++||.++.+.|| +|+.+++.|+.++.++..||.|+. |++|
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~-----F~ed 407 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVI-----FDED 407 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhCCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEE-----ecCC
Confidence 389999999999999999999999999999999999999988888 899999999999999999999998 5566
Q ss_pred HHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHh
Q 016998 144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILS 202 (379)
Q Consensus 144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~ 202 (379)
.-.++++.++||.+|.|-||+... =.+.-.....+|++..++..++.|||.|+++|.+
T Consensus 408 TP~~LI~~~~PdilVKGgDy~~~~-i~g~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 408 TPEELIEAVKPDILVKGGDYKIEK-IVGADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred CHHHHHHHhCcceEEccCCCChhh-ccchhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 666778889999999999996531 1233345567889999999999999999999975
No 34
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.78 E-value=1.2e-18 Score=169.87 Aligned_cols=137 Identities=22% Similarity=0.321 Sum_probs=108.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCC-----eEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEeCC
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGD-----ELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIANA 136 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d-----~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~~~ 136 (379)
...|+++|+|||+|+||+++|++|++.++ .+++.+.+.|.....+. ..+++.++|.+.++.+ +||.++. .
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~-gvd~~~v-~ 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY-GVDALVV-L 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc-CCcEEEE-E
Confidence 34699999999999999999999998763 35666665555322221 3499999999999998 7998886 3
Q ss_pred Ccc--cc----HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe----EEEeccC--C--CCCHHHHHHHHHh
Q 016998 137 PYA--IT----EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR----YKQIKRT--E--GVSSTDIVGRILS 202 (379)
Q Consensus 137 p~~--~t----~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~----~~~v~r~--~--~VSST~Ir~rI~~ 202 (379)
+|+ +. ++|++.++++++++++|+|+||+||.++.++.+.++..|+ +.+++.. + .||||.||+.+..
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~ 172 (304)
T COG0196 93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALRE 172 (304)
T ss_pred eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHhc
Confidence 343 22 4899877789999999999999999999999999999885 4444442 2 5999999999986
Q ss_pred c
Q 016998 203 S 203 (379)
Q Consensus 203 ~ 203 (379)
+
T Consensus 173 g 173 (304)
T COG0196 173 G 173 (304)
T ss_pred C
Confidence 5
No 35
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.77 E-value=1.8e-18 Score=150.03 Aligned_cols=95 Identities=37% Similarity=0.719 Sum_probs=86.4
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHH
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKD 336 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~ 336 (379)
++|++.|+||++|.||+.+|++|++.+|+++|+++.|+.+++.|+ .|+++.+||.+++++|++||.|++.+|+....
T Consensus 2 ~~v~~~G~FD~~H~GH~~ll~~a~~~~~~l~v~v~~~~~~~~~~~--~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~- 78 (136)
T cd02170 2 KRVYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVARDETVAKIKR--RPILPEEQRAEVVEALKYVDEVILGHPWSYFK- 78 (136)
T ss_pred eEEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECCcHHHHhcCC--CCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH-
Confidence 689999999999999999999999999999999999988776664 49999999999999999999999999888665
Q ss_pred HHHHcCCcEEEEcCCCCC
Q 016998 337 MITTFNICLVVHGTVSET 354 (379)
Q Consensus 337 ~i~~~~~d~vv~G~d~~~ 354 (379)
.+.+++||+++.|+||..
T Consensus 79 ~l~~~~~~~vv~G~d~~f 96 (136)
T cd02170 79 PLEELKPDVIVLGDDQKN 96 (136)
T ss_pred HHHHHCCCEEEECCCCCC
Confidence 467899999999999854
No 36
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.77 E-value=2.4e-18 Score=151.46 Aligned_cols=97 Identities=33% Similarity=0.496 Sum_probs=88.4
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCch
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVT 334 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~ 334 (379)
++++|++.|+||.+|.||..+|++|+++++.++|++++|+.++..|+ +|++|++||++.+++|+|||.|++.+ ...+
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~vv~~~~d~~~~~~~~--~~i~~~~eR~~~l~~lg~VD~vi~~~-~~~~ 79 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQAARSLGDILVVSLTSDRYVNKGPG--RPIFPEDLRAEVLAALGFVDYVVLFD-NPTA 79 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHHHHHhCCeEEEEEeChHHhccCCC--CCCCCHHHHHHHHHccCCccEEEECC-CCCH
Confidence 46789999999999999999999999999999999999988776553 69999999999999999999999874 5678
Q ss_pred HHHHHHcCCcEEEEcCCCCC
Q 016998 335 KDMITTFNICLVVHGTVSET 354 (379)
Q Consensus 335 ~~~i~~~~~d~vv~G~d~~~ 354 (379)
++|+++++++++|+|.||..
T Consensus 80 ~~fi~~l~~~~vv~G~d~~f 99 (144)
T cd02172 80 LEIIDALQPNIYVKGGDYEN 99 (144)
T ss_pred HHHHHHhCCCEEEECCCccc
Confidence 99999999999999999865
No 37
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.75 E-value=6.1e-18 Score=145.56 Aligned_cols=131 Identities=19% Similarity=0.259 Sum_probs=98.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc-ccEEEe-CCCcc---c
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-VDEVIA-NAPYA---I 140 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~-VD~Vv~-~~p~~---~ 140 (379)
+++++|+||++|.||+.++++|++.+ +.++|++.+++.... +.+++++.++|+++++.+.. ++.++. ..+.. .
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~~ 79 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKILL 79 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhccC
Confidence 37899999999999999999999999 999999988765432 13579999999999999863 566654 22211 1
Q ss_pred cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhC---CeEEEeccC---CCCCHHHHHHH
Q 016998 141 TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKV---GRYKQIKRT---EGVSSTDIVGR 199 (379)
Q Consensus 141 t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~---g~~~~v~r~---~~VSST~Ir~r 199 (379)
+.+|+..++..++++++++|.|+.+|.+++++ +.++.. -++..+++. ..||||.||++
T Consensus 80 ~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~-~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 80 AVVFILKILLKVGPDKVVVGEDFAFGKNASYN-KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred HHHHHHHHHHHcCCcEEEECCccccCCchhhh-HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 12466666667899999999999999988774 333332 345666665 56999999974
No 38
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.75 E-value=3.5e-18 Score=149.88 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=95.4
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCCCCch
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAPWEVT 334 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~~~~~ 334 (379)
.++++++|+|||+|.||+++++||.+++|.|+|+|..+ ..| +|.++++||..+++ +.+..++|-+....++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~n----p~K---~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAIN----PSK---KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeC----CCc---CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 57899999999999999999999999999999999866 335 69999999998875 45889999998888899
Q ss_pred HHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeee
Q 016998 335 KDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLI 370 (379)
Q Consensus 335 ~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~ 370 (379)
.|+++++++.++||| +|+++| ..+..++|++|||=.
T Consensus 75 vd~ak~~~a~~ivRGLR~~sDfeYE~qma~~N~~L~~eveTvFl~~s 121 (159)
T COG0669 75 VDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAPEVETVFLMPS 121 (159)
T ss_pred HHHHHHcCCCEEEEeccccchHHHHHHHHHHHHhhcccccEEEecCC
Confidence 999999999999999 677776 457779999999844
No 39
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.72 E-value=1.6e-17 Score=147.67 Aligned_cols=132 Identities=26% Similarity=0.335 Sum_probs=95.5
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccH---
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITE--- 142 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~--- 142 (379)
++|++.|+||++|.||..+|++|++++|+|+||+++|+.+.++|+.|+++.++|++|++. +++.+.+...+.+.+
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~--~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKK--FLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCCCCCCCHHHHHHHHHH--HHHhcCCCCcEEEEeccc
Confidence 579999999999999999999999999999999999987766666899999999999996 566654443333221
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc-----CCCCCHHHHHHHHHhc
Q 016998 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR-----TEGVSSTDIVGRILSS 203 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r-----~~~VSST~Ir~rI~~~ 203 (379)
.|.... ..++|++|+|+|...| +...-+..++.| ++..++. ++.+|||.||+++...
T Consensus 80 ~~gp~~--~~~~d~ivvs~et~~~--~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~ 145 (153)
T PRK00777 80 PYGPAL--EDDFDAIVVSPETYPG--ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDE 145 (153)
T ss_pred cCCCcc--ccCCCEEEEChhhhhh--HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhcc
Confidence 121111 1369999999995433 222233444444 2445554 5679999999998754
No 40
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.66 E-value=4.4e-16 Score=136.31 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=91.2
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCC-CCch
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP-WEVT 334 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~-~~~~ 334 (379)
++++++|+|||+|.||++++++|.+++|.|+|++..+ ..| .+.++.+||..++ ++++..+.|.+... .+++
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~n----p~K---~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~ 74 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSIN----PDK---SNASDLDSRFKNVKNKLKDFKNVEVLINENKLT 74 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccC----CCC---CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcH
Confidence 5799999999999999999999999999999999876 335 4789999999888 55577777776543 5899
Q ss_pred HHHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEeeecc
Q 016998 335 KDMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPLINY 372 (379)
Q Consensus 335 ~~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~~~~ 372 (379)
.+++++.+++++||| .|++++ ..+++++|+++||=...
T Consensus 75 v~~~~~~~a~~ivrGlR~~~DfeyE~~~a~~n~~l~~~ietvfl~~~~~ 123 (140)
T PRK13964 75 AEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLETILIIPDYD 123 (140)
T ss_pred HHHHHHCCCeEEEEecCCCccHHHHHHHHHHHHhhcCCCeEEEeecCCC
Confidence 999999999999999 455555 46888999999985543
No 41
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.58 E-value=1.5e-14 Score=129.22 Aligned_cols=130 Identities=20% Similarity=0.187 Sum_probs=88.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCccccHH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQ 143 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~e 143 (379)
|+++++.|+||++|.||+.++++|++.+|+|++++..++ .| .++.+.++|++|++. ++.++.+.+..--.++.+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~~ 75 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLLVD 75 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHHH
Confidence 357999999999999999999999999999999987654 23 578999999999997 778887766432233445
Q ss_pred HHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh-C----CeEEEeccC--CCCCHHHHHHHHHhc
Q 016998 144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK-V----GRYKQIKRT--EGVSSTDIVGRILSS 203 (379)
Q Consensus 144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~-~----g~~~~v~r~--~~VSST~Ir~rI~~~ 203 (379)
++ +++++++++.|-|-....+..-......+ . ..+..+... ..||||.||+++..+
T Consensus 76 ~~----~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 76 FA----REVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HH----HHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 54 46789999999442111010000000111 1 112222222 269999999999854
No 42
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.58 E-value=1.6e-14 Score=131.86 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=94.3
Q ss_pred EecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cccc---------EEEeCC--C
Q 016998 70 MDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD---------EVIANA--P 137 (379)
Q Consensus 70 ~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD---------~Vv~~~--p 137 (379)
+.-.||++|.||..++++|.+.++.+.|.+.+. + .+.++.++|++|++.. +... ..+... |
T Consensus 4 ~~~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~ 76 (182)
T smart00764 4 IVMNANPFTLGHRYLVEQAAAECDWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFP 76 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccCh
Confidence 345799999999999999999999888777654 2 3567999999999852 2212 111111 1
Q ss_pred ccc---------------cHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc----CCCCCHH
Q 016998 138 YAI---------------TEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR----TEGVSST 194 (379)
Q Consensus 138 ~~~---------------t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r----~~~VSST 194 (379)
--+ .++|++.+.+++++..|++|+||+||.++.|+.+.|++.+ ++..+++ ++.+|||
T Consensus 77 ~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST 156 (182)
T smart00764 77 SYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISAS 156 (182)
T ss_pred hhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHH
Confidence 111 0378875556799999999999999999999999988764 3556666 3459999
Q ss_pred HHHHHHHhc
Q 016998 195 DIVGRILSS 203 (379)
Q Consensus 195 ~Ir~rI~~~ 203 (379)
.||+.|.++
T Consensus 157 ~IR~~L~~G 165 (182)
T smart00764 157 TVRKLLKEG 165 (182)
T ss_pred HHHHHHHcC
Confidence 999999754
No 43
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.57 E-value=1.5e-14 Score=141.55 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=96.8
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-c---------cccEEEe
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K---------WVDEVIA 134 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~---------~VD~Vv~ 134 (379)
.+++.+.|+|||+|.||..++++|.+.++.++|.+.+. + ++.++.++|++|++.. + +-|.++.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~v~ 186 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGDYIIS 186 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCCeeec
Confidence 56899999999999999999999999999888877552 2 4678999999999842 1 1122222
Q ss_pred CCCcc----------------cc-HHHHHHHh-hccCccEEEEcCCCCCCCCCchHHHHHHhCCe-----EEEecc----
Q 016998 135 NAPYA----------------IT-EQFMNRLF-NEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKR---- 187 (379)
Q Consensus 135 ~~p~~----------------~t-~efl~~ll-~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~-----~~~v~r---- 187 (379)
...|. ++ ++|++ ++ +++++..||+|+||+||.++.|+...++. |+ +..++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~-~~~~gf~v~~v~~~~~~ 264 (297)
T cd02169 187 SATFPSYFIKEQDVVIKAQTALDARIFRK-YIAPALNITKRYVGEEPFSRVTAIYNQTMQEE-LLSPAIEVIEIERKKYD 264 (297)
T ss_pred cccChhhhcCChhHHHHHHhcCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcchhHHHHHHh-cccCCCEEEEecccccC
Confidence 22210 00 28887 66 56999999999999999999999555554 43 344443
Q ss_pred CCCCCHHHHHHHHHhc
Q 016998 188 TEGVSSTDIVGRILSS 203 (379)
Q Consensus 188 ~~~VSST~Ir~rI~~~ 203 (379)
.+.||||.||+.|.++
T Consensus 265 g~~ISST~IR~~l~~G 280 (297)
T cd02169 265 GQPISASTVRQLLKEG 280 (297)
T ss_pred CcEEcHHHHHHHHHcC
Confidence 3469999999999866
No 44
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.56 E-value=1.2e-14 Score=129.24 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=83.1
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc----cCcCceEe---CC
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RYVDEVII---GA 329 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~Vd~Vii---~~ 329 (379)
+.|++.|+||++|.||+.+|++|+.++|+|+|||++|+.++++|+ .|++++++|+++++.+ ...+.+.+ .+
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~~d~livgi~~d~~~~~~K~--~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGLTSDEFAKSYKK--HKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHcCCEEEEEEcCCccccccCC--CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 468999999999999999999999999999999999998877775 6999999999999854 12233332 23
Q ss_pred CCCchHHHHHHcCCcEEEEcCC-CCCCC--------CCCCCceEEEEeeecc
Q 016998 330 PWEVTKDMITTFNICLVVHGTV-SETNT--------PLTVSLQFLYLPLINY 372 (379)
Q Consensus 330 ~~~~~~~~i~~~~~d~vv~G~d-~~~~~--------~l~~~~evv~lp~~~~ 372 (379)
+++.+. ..++|++|.|+| |.... .--..++++.+|+..+
T Consensus 80 ~~gp~~----~~~~d~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~ 127 (153)
T PRK00777 80 PYGPAL----EDDFDAIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLA 127 (153)
T ss_pred cCCCcc----ccCCCEEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeec
Confidence 344332 236999999988 54431 1113488899998653
No 45
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.55 E-value=5.1e-15 Score=134.22 Aligned_cols=138 Identities=18% Similarity=0.200 Sum_probs=94.0
Q ss_pred CCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCc----c---ccE
Q 016998 61 GKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLK----W---VDE 131 (379)
Q Consensus 61 ~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~----~---VD~ 131 (379)
.......|+++|+||++|.||+.||++|.++| +.++||+.+|+.....+. ..+.+.++|.+.++..- . ++.
T Consensus 15 ~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i 94 (177)
T PLN02388 15 PPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQA 94 (177)
T ss_pred CCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 33446689999999999999999999999998 479999999997533222 57999999999998631 1 122
Q ss_pred EEeCCCccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe--EEEec---c---CCCCCHHHHHHHHHhc
Q 016998 132 VIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIK---R---TEGVSSTDIVGRILSS 203 (379)
Q Consensus 132 Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~--~~~v~---r---~~~VSST~Ir~rI~~~ 203 (379)
+-+..||..+.. .-+.|++|++..-..|...-+.+...+.... ++.++ . ...||||+||+|+.+.
T Consensus 95 ~~i~D~~Gpt~~-------~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~ 167 (177)
T PLN02388 95 EPIIDPYGPSIV-------DENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEK 167 (177)
T ss_pred EEecCCCCCccc-------CCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHH
Confidence 223455544321 1368999999988776544443332222222 22221 1 3579999999999876
Q ss_pred cc
Q 016998 204 ME 205 (379)
Q Consensus 204 ~~ 205 (379)
.+
T Consensus 168 ~~ 169 (177)
T PLN02388 168 AV 169 (177)
T ss_pred HH
Confidence 44
No 46
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.55 E-value=2.9e-14 Score=127.44 Aligned_cols=106 Identities=20% Similarity=0.329 Sum_probs=88.5
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCchH
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTK 335 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~~ 335 (379)
+++++.|+|||+|.||+.++++|++.+|.|+|+++++. .| .|.++.++|+.+++. ++++|.+.+...++.+.
T Consensus 2 ~igi~gGsFdP~H~GHl~~~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t~ 74 (159)
T PRK00168 2 KIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINP----SK---KPLFSLEERVELIREATAHLPNVEVVSFDGLLV 74 (159)
T ss_pred cEEEEeeecCCCCHHHHHHHHHHHHHCCEEEEEECCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEEecCCccHH
Confidence 68999999999999999999999999999999998763 24 489999999999977 89999999987778899
Q ss_pred HHHHHcCCcEEEEc----CCCCCC-------CCCCCCceEEEEee
Q 016998 336 DMITTFNICLVVHG----TVSETN-------TPLTVSLQFLYLPL 369 (379)
Q Consensus 336 ~~i~~~~~d~vv~G----~d~~~~-------~~l~~~~evv~lp~ 369 (379)
++++.++++++++| .||++. ..+...+++++++.
T Consensus 75 ~~~~~~~~~~~~~gl~~w~d~e~~~~~~~~~r~~~~~~~~i~~~~ 119 (159)
T PRK00168 75 DFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMP 119 (159)
T ss_pred HHHHHcCCCEEEecCcchhhHHHHHHHHHhCCCCCCCCcEEEEeC
Confidence 99999999999999 455543 11222467888763
No 47
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.54 E-value=9.2e-14 Score=125.04 Aligned_cols=126 Identities=23% Similarity=0.324 Sum_probs=84.6
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHH-hcCcccc-E---EEeCCCcccc
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV-SGLKWVD-E---VIANAPYAIT 141 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l-~~~~~VD-~---Vv~~~p~~~t 141 (379)
|+++.|.||++|.||++++++|++.+|+|++++.+++. .+|..+.++.+||++|+ ++++.++ . +++.......
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~~~ 78 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIERN 78 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCccHH
Confidence 47899999999999999999999999999999888764 33444555779999999 4555553 3 2221111111
Q ss_pred HHHHHHHhhc-cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec---cCCCCCHHHHHHHHHhc
Q 016998 142 EQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK---RTEGVSSTDIVGRILSS 203 (379)
Q Consensus 142 ~efl~~ll~~-~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~---r~~~VSST~Ir~rI~~~ 203 (379)
..+...+... -++|.|+.|+.. ....+++.| ++...+ |+ ++|||+||++|.++
T Consensus 79 ~~w~~~v~~~~p~~D~vf~~~~~--------~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 79 SIWVSYVESMTPPFDVVYSNNPL--------VRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred HHHHHHHHHhCCCCCEEEECCHH--------HHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 2222111110 178999999432 245566666 445555 55 89999999999864
No 48
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.51 E-value=4.5e-14 Score=138.81 Aligned_cols=110 Identities=19% Similarity=0.365 Sum_probs=88.2
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc--cCcCceEe---CCCCC
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYVDEVII---GAPWE 332 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~Vd~Vii---~~~~~ 332 (379)
+|++.|+||+||.||+.+|++|+.+||+|||||++|+.+.++|. +| .|+++|+..|+++ ++++.+.+ .++++
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~--~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKV--YP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCC--CC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 69999999999999999999999999999999999999987664 57 9999999999995 77777555 34555
Q ss_pred chHHHHHHcCCcEEEEcCCCCCC-C-----CCC---CCceEEEEeeecce
Q 016998 333 VTKDMITTFNICLVVHGTVSETN-T-----PLT---VSLQFLYLPLINYC 373 (379)
Q Consensus 333 ~~~~~i~~~~~d~vv~G~d~~~~-~-----~l~---~~~evv~lp~~~~~ 373 (379)
.+ +..-++|++|.|.+.... . ..+ .-++++.+|+..+|
T Consensus 79 pt---~~~~~~d~IVVS~ET~~~~~~IN~~R~e~Gl~pleIv~I~~v~~~ 125 (322)
T PRK01170 79 NT---LYEEDYEIIVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVLAE 125 (322)
T ss_pred CC---cccCCCCEEEEeccccccHHHHHHHHHHCCCCceEEEEEEeEEcC
Confidence 43 456789999999876544 1 111 24788999887655
No 49
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.51 E-value=1.1e-13 Score=122.98 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=84.9
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCCccccHHHHH
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAPYAITEQFMN 146 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p~~~t~efl~ 146 (379)
+++.|+||++|.||..++++|.+.+|++++++.+++ .| +++++.++|++|++. ++.++.+.+..-..++.+++
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~~l- 75 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVDFA- 75 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHHHH-
Confidence 689999999999999999999999999999988654 24 478999999999986 66677666532112344554
Q ss_pred HHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC-----eEEEeccC--CCCCHHHHHHHHHhc
Q 016998 147 RLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG-----RYKQIKRT--EGVSSTDIVGRILSS 203 (379)
Q Consensus 147 ~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-----~~~~v~r~--~~VSST~Ir~rI~~~ 203 (379)
+.++.+++++|-|--...+..-......+.+ .+..+... ..+|||.||+++..+
T Consensus 76 ---~~l~~~~~i~G~d~~~~~e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 76 ---RKHGANVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred ---HHcCCCEEEECCcchhhHHHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 4678899999955321111110010111111 12222222 259999999999855
No 50
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=138.76 Aligned_cols=125 Identities=25% Similarity=0.354 Sum_probs=90.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC--ccccEEE---eCCCcccc
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL--KWVDEVI---ANAPYAIT 141 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~--~~VD~Vv---~~~p~~~t 141 (379)
+|++.|+||.+|.||..+|++|+++||+|+|||++|+.+.++|..| .++++|.++++++ +.++.+. +..||..+
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~Gpt 80 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETGDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYGNT 80 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcCCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Confidence 6999999999999999999999999999999999999887666667 9999999999984 4444322 23444322
Q ss_pred HHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc---C--CCCCHHHHHHHHH
Q 016998 142 EQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR---T--EGVSSTDIVGRIL 201 (379)
Q Consensus 142 ~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r---~--~~VSST~Ir~rI~ 201 (379)
. ...++|++|+|.+...+.. ..-+..++.| +++.++. . ..+|||+||+.-.
T Consensus 81 ~-------~~~~~d~IVVS~ET~~~~~--~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~ei 140 (322)
T PRK01170 81 L-------YEEDYEIIVVSPETYQRAL--KINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEI 140 (322)
T ss_pred c-------ccCCCCEEEEeccccccHH--HHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhc
Confidence 1 1347999999999866532 2223334444 2333333 2 3489999998654
No 51
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.46 E-value=8.2e-14 Score=120.73 Aligned_cols=62 Identities=42% Similarity=0.558 Sum_probs=47.1
Q ss_pred EEecccCcCCHHHHHHHHHHHHcCCe-EEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccE
Q 016998 69 YMDGCFDLMHYGHANALRQAKALGDE-LVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131 (379)
Q Consensus 69 ~~~G~FD~lH~GH~~lL~qA~~~~d~-LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~ 131 (379)
+++|+||++|.||.++|++|++.++. +++++.++....+.+ +++++.++|++|++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~-~~~~~~~~R~~ml~~~~~~~~ 63 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK-KPIFSFEERLEMLRAAFKDDP 63 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT-SSSSTHHHHHHHHHHHHTTCT
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc-cccCcHHHHHHHHHHHHhhcC
Confidence 57999999999999999999999986 577777777543322 489999999999998766555
No 52
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.46 E-value=1.3e-13 Score=104.49 Aligned_cols=65 Identities=43% Similarity=0.719 Sum_probs=59.4
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCc
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE 324 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~ 324 (379)
++++.|+||++|.||+.++++|++.+|.++|+|.+|+..+..|. .|+++.++|..++++|++++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKG--EPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCC--CCCCCHHHHHHHHHHhccccC
Confidence 47899999999999999999999999999999999988877664 399999999999999999875
No 53
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.45 E-value=1.2e-12 Score=117.48 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=84.4
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHh-cCcccc------EEEeCCCcc
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVS-GLKWVD------EVIANAPYA 139 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD------~Vv~~~p~~ 139 (379)
+++++|+||++|.||.+++++|.+.+|+|+|++.++... .+....++.+||++|++ .+...| .++.-....
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~--~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~~ 78 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQES--HTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDIE 78 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCCC
Confidence 378999999999999999999999999999998765432 23344578899999999 445554 333321122
Q ss_pred ccHHHHHHHhhcc-CccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEeccC--CCCCHHHHHHHHHh
Q 016998 140 ITEQFMNRLFNEH-KIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIKRT--EGVSSTDIVGRILS 202 (379)
Q Consensus 140 ~t~efl~~ll~~~-~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~r~--~~VSST~Ir~rI~~ 202 (379)
..+.+...+.... ++|.++.|++|.. ..++..| .+..++++ +++|+|.||++|.+
T Consensus 79 ~~~~w~~~v~~~vp~~div~~g~~~~~--------~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~ 137 (163)
T cd02166 79 RNSLWVSYVESLTPPFDVVYSGNPLVA--------RLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG 137 (163)
T ss_pred chHHHHHHHHHHCCCCCEEEECchHHH--------HhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence 3334443322222 4788999965311 2333444 44566663 47999999999974
No 54
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.44 E-value=2.1e-13 Score=103.39 Aligned_cols=64 Identities=52% Similarity=0.768 Sum_probs=57.0
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcccc
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD 130 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD 130 (379)
++++.|+||++|.||+.++++|+++++.+++++.+|+.....|..++++.++|.++++.+.+++
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCCEEEEEECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence 4799999999999999999999999999999999887766555459999999999999987765
No 55
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.42 E-value=1.5e-12 Score=115.92 Aligned_cols=119 Identities=22% Similarity=0.314 Sum_probs=79.1
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcccc----EEEeCCCccccH
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD----EVIANAPYAITE 142 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD----~Vv~~~p~~~t~ 142 (379)
++++.|+||++|.||+.++++|++.+|++++++..+ +.| .+..+.++|++|++.+- .| +|.. .+ .++.
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k-~~~~~~~~R~~m~~~a~-~~~~~~~v~~-~e-~yt~ 72 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK-KPLFSLEERVELIKDAT-KHLPNVRVDV-FD-GLLV 72 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC-CCCcCHHHHHHHHHHHH-hhCCCeEEcC-cc-chHH
Confidence 378999999999999999999999999999988643 234 47789999999998752 33 2222 11 2344
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh---CC-------eEEEeccCC---CCCHHHHHHHHHhc
Q 016998 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK---VG-------RYKQIKRTE---GVSSTDIVGRILSS 203 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~---~g-------~~~~v~r~~---~VSST~Ir~rI~~~ 203 (379)
+++ +.++.++++.|-|-. .+++.+.+ .. ....+..+. .+|||.||+++..+
T Consensus 73 dt~----~~l~~~~~i~G~~~~------~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 73 DYA----KELGATFIVRGLRAA------TDFEYELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred HHH----HHcCCCEEEecCcch------hhHHHHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 444 456788999884421 12221111 11 111121222 69999999999865
No 56
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.40 E-value=2.5e-12 Score=110.56 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=87.8
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccC-cCceEeCCCCCc--
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRY-VDEVIIGAPWEV-- 333 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~-Vd~Vii~~~~~~-- 333 (379)
++++.|+||++|.||+.++++|++.+ |.++|++.++..... + +.++++.++|+.+++++.. +|.|++......
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~-~--~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~ 77 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKK-R--NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKI 77 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhc-c--cccCCCHHHHHHHHHHhccCCcEEEEEecChhhc
Confidence 47889999999999999999999999 999999999865432 1 2589999999999999986 788777432221
Q ss_pred ------hHHHHHHcCCcEEEEcCCCCCCC---------CCCCCceEEEEeee
Q 016998 334 ------TKDMITTFNICLVVHGTVSETNT---------PLTVSLQFLYLPLI 370 (379)
Q Consensus 334 ------~~~~i~~~~~d~vv~G~d~~~~~---------~l~~~~evv~lp~~ 370 (379)
....+..+++++++.|.|+.... .+..+++++.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~ 129 (143)
T cd02039 78 LLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRV 129 (143)
T ss_pred cCHHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEec
Confidence 22456778999999999876542 45578999999987
No 57
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.39 E-value=7.2e-13 Score=116.61 Aligned_cols=122 Identities=28% Similarity=0.348 Sum_probs=81.0
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCC--CCCCCHHHHHHHHhcC----c---cccEEEeCC
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSGL----K---WVDEVIANA 136 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~~----~---~VD~Vv~~~ 136 (379)
+|++.|+||++|.||+.+|++|.+++ +++++|+.+|+.. ..|. .++++.++|+++++.+ . -++.+-...
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~-~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELL-KNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhc-ccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 38899999999999999999999998 7899999998843 3343 3689999999999863 1 112222345
Q ss_pred CccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCC----eEEEecc------CCCCCHHHHHH
Q 016998 137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVG----RYKQIKR------TEGVSSTDIVG 198 (379)
Q Consensus 137 p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g----~~~~v~r------~~~VSST~Ir~ 198 (379)
||..+.. .-..|++|+...-..|...-... -++.| +++.++. ...||||+||+
T Consensus 80 ~~Gpt~~-------~~~~d~lVVS~ET~~~~~~iN~~--R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT-------DPDLEAIVVSPETYPGALKINRK--REENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc-------CCCCCEEEEcHHHhhhHHHHHHH--HHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 5543321 12578999997765543322222 12333 1233322 34699999996
No 58
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.38 E-value=4.2e-12 Score=117.55 Aligned_cols=136 Identities=21% Similarity=0.167 Sum_probs=90.4
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcC-ccccEEEe-----
Q 016998 64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEVIA----- 134 (379)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~-~~VD~Vv~----- 134 (379)
.+++++++|+||++|.||+.++++|++.. |.+++.+.+.+. .|. +.+++.++|++|++.. ...+.+..
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 35688999999999999999999999876 777777766542 243 4688999999999742 33333332
Q ss_pred -CCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEecc-----------------------
Q 016998 135 -NAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKR----------------------- 187 (379)
Q Consensus 135 -~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r----------------------- 187 (379)
.....+|.+.++.+.+.+ ++ ++++|.|--..-..+..++.+-+...+.+++|
T Consensus 80 ~~~~~syT~~tl~~l~~~~-p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i 158 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARY-PDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRPGYPLEALALPALQQLLEAAGAI 158 (203)
T ss_pred hCCCCCCHHHHHHHHHHHC-CCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCccccchhHHHHhhccCCCE
Confidence 123345556776655554 33 89999995433334444544444444433333
Q ss_pred ------CCCCCHHHHHHHHHhc
Q 016998 188 ------TEGVSSTDIVGRILSS 203 (379)
Q Consensus 188 ------~~~VSST~Ir~rI~~~ 203 (379)
...||||+||+++.++
T Consensus 159 ~~~~~~~~~ISST~IR~~l~~g 180 (203)
T PRK00071 159 TLLDVPLLAISSTAIRERIKEG 180 (203)
T ss_pred EEEeCCCCccCHHHHHHHHHcC
Confidence 1249999999999854
No 59
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.36 E-value=5e-12 Score=116.83 Aligned_cols=137 Identities=23% Similarity=0.198 Sum_probs=102.7
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-Ccccc------EEE
Q 016998 64 KRVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVD------EVI 133 (379)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD------~Vv 133 (379)
.+++++++|+||++|.||+.+.++|.+.. |+|++.++..+ ..|. +...+.++|++|++- ++... ..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 46789999999999999999999999976 55565544433 3444 679999999999973 22222 223
Q ss_pred eCCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCC---------------------
Q 016998 134 ANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTE--------------------- 189 (379)
Q Consensus 134 ~~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~--------------------- 189 (379)
......+|.+.++.+.+++++| +.++|.|---.-..+..++.+.+..++..++|..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~ 158 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLP 158 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEccCc
Confidence 3445567778888776678888 5899999765556677888888888887777632
Q ss_pred --CCCHHHHHHHHHhc
Q 016998 190 --GVSSTDIVGRILSS 203 (379)
Q Consensus 190 --~VSST~Ir~rI~~~ 203 (379)
.||||.||+++..+
T Consensus 159 ~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 159 RLDISSTEIRERIRRG 174 (197)
T ss_pred cccCchHHHHHHHhCC
Confidence 49999999999865
No 60
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.35 E-value=5.6e-12 Score=112.01 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=77.0
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCCchHH
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWEVTKD 336 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~~~~~ 336 (379)
++++.|+|||+|.||+.++++|++.+|.|+|+++++. .| .|.++.++|+.+++. ++.++.+.+...+..+.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~d~v~v~~~~~~----~k---~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLFDEVIVAVAVNP----SK---KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCC----CC---CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 4688999999999999999999999999999998763 24 478999999999976 799999999876678999
Q ss_pred HHHHcCCcEEEEcCC
Q 016998 337 MITTFNICLVVHGTV 351 (379)
Q Consensus 337 ~i~~~~~d~vv~G~d 351 (379)
+++.++.+++++|.|
T Consensus 74 ~l~~l~~~~~i~G~d 88 (153)
T cd02163 74 FARKHGANVIVRGLR 88 (153)
T ss_pred HHHHcCCCEEEECCc
Confidence 999999999999943
No 61
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.34 E-value=1.2e-11 Score=117.99 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=78.5
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-Ccc----------ccE
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKW----------VDE 131 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~----------VD~ 131 (379)
+++++.+|+||++|.||+.++++|.+.. |++++....++ ..| ....+.++|++|++. ++. .|.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~~~ 97 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK-ADVSAAEHRLAMTRAAAASLVLPGVTVRVATD 97 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC-CCCCCHHHHHHHHHHHHHhccCCCceEEEeHh
Confidence 4578999999999999999999999875 77777766543 234 567899999999973 111 111
Q ss_pred EEeCCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEe
Q 016998 132 VIANAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185 (379)
Q Consensus 132 Vv~~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v 185 (379)
-+......+|-+.++.+-+++.++ ++++|.|--..-..+..++.+-+...+.++
T Consensus 98 Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~ 154 (243)
T PRK06973 98 EIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAA 154 (243)
T ss_pred hhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEE
Confidence 122223445667777766667445 799999965444455555555554444433
No 62
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.34 E-value=7.9e-12 Score=114.63 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=90.8
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc-cccEEEe------CCCc
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WVDEVIA------NAPY 138 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~VD~Vv~------~~p~ 138 (379)
++++|+||++|.||..++++|++.+ |++.+.+..++. .|+....+.++|++|++.+. ....+.. ....
T Consensus 2 ~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~~ 78 (192)
T cd02165 2 ALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDGP 78 (192)
T ss_pred eEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCCC
Confidence 6899999999999999999999998 888887765432 24357889999999998532 2222222 1123
Q ss_pred cccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC--------------------------CC
Q 016998 139 AITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------------EG 190 (379)
Q Consensus 139 ~~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~--------------------------~~ 190 (379)
.+|.+.++.+.+.+. .+ ++++|.|--..-..+..++.+.+...+.+++|. ..
T Consensus 79 ~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
T cd02165 79 SYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNPLLN 158 (192)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCCccc
Confidence 455566766655552 33 788899964444445555555555555544441 25
Q ss_pred CCHHHHHHHHHhc
Q 016998 191 VSSTDIVGRILSS 203 (379)
Q Consensus 191 VSST~Ir~rI~~~ 203 (379)
||||+||+++.++
T Consensus 159 iSST~IR~~~~~g 171 (192)
T cd02165 159 ISSTEIRERLKNG 171 (192)
T ss_pred cCHHHHHHHHHcC
Confidence 9999999999855
No 63
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.33 E-value=3.7e-12 Score=114.66 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=79.6
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcC-c---eEeCCCCCc
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVD-E---VIIGAPWEV 333 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd-~---Vii~~~~~~ 333 (379)
.++.|+|||||.||+.++++|++.+|.|+|+|.+++. ..|.+ .|+ +.+||..++ ++++.++ . ++..... .
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~D~lii~i~s~~~--~~k~~-~p~-~~~eR~~mi~~al~~~~~~~~~~vP~~d~-~ 76 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQE--SHTLE-NPF-TAGERILMITQSLKEVGDLTYYIIPIEDI-E 76 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHCCEEEEEEcCCCC--CCCCC-CCC-CHHHHHHHHHHHHhcCCCceEEEEecCCc-c
Confidence 5789999999999999999999999999999998865 33432 345 779999999 7778874 3 2222222 3
Q ss_pred hHHHHHHc------CCcEEEEcCCCCCCCCCCCCceEEEEee
Q 016998 334 TKDMITTF------NICLVVHGTVSETNTPLTVSLQFLYLPL 369 (379)
Q Consensus 334 ~~~~i~~~------~~d~vv~G~d~~~~~~l~~~~evv~lp~ 369 (379)
..+...++ ++|+|+.|.........+.|++|+++|.
T Consensus 77 ~~~~w~~~v~~~~p~~D~vf~~~~~~~~~f~e~g~~v~~~p~ 118 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVVYSNNPLVRRLFKEAGYEVKRPPM 118 (165)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHcCCEEEECCC
Confidence 45566676 8999999954333345567999999993
No 64
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.32 E-value=1.6e-12 Score=112.67 Aligned_cols=91 Identities=30% Similarity=0.482 Sum_probs=74.2
Q ss_pred EEcCccccCChHHHHHHHHHHhcCCE-EEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCc--------------
Q 016998 260 YIDGAFDLFHAGHVEILKKARQLGDF-LLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDE-------------- 324 (379)
Q Consensus 260 ~~~G~FDl~H~GHi~~L~~A~~~gd~-liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~-------------- 324 (379)
+++|+|||+|.||+.+|++|++.+|. +++++.+|....+.+ +++++.++|+.+++.+...+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~ 77 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK 77 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence 57899999999999999999999997 788888887654322 489999999999999987777
Q ss_pred --------eEeCCC-------CCchHHHHHHcCCcEEEEcCCCC
Q 016998 325 --------VIIGAP-------WEVTKDMITTFNICLVVHGTVSE 353 (379)
Q Consensus 325 --------Vii~~~-------~~~~~~~i~~~~~d~vv~G~d~~ 353 (379)
++++++ |....++++.+++.++.|+.++.
T Consensus 78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~ 121 (157)
T PF01467_consen 78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDP 121 (157)
T ss_dssp HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTT
T ss_pred hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCc
Confidence 788887 77788999999999999996654
No 65
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.30 E-value=1.9e-11 Score=110.86 Aligned_cols=133 Identities=17% Similarity=0.100 Sum_probs=89.3
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccc--cEEEe-C------
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWV--DEVIA-N------ 135 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~V--D~Vv~-~------ 135 (379)
++++..|+||++|.||..+++++ +..|++.+.+.... +.+ ++..+.++|++|++.+ +.. ..+.. +
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~~~ 77 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQELY 77 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhhhc
Confidence 57899999999999999999996 45688887754421 112 3677999999999853 111 12221 1
Q ss_pred --CCccccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 136 --APYAITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 136 --~p~~~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
.+..+|-+.++.+.+++. .+ ++++|.|--..-..+..++.+.+...+...++...||||+||+++..+
T Consensus 78 ~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 78 APDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWTVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred cCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence 122345566666655552 22 577799865444445556666666667777766789999999999854
No 66
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.25 E-value=6.4e-11 Score=108.91 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=85.0
Q ss_pred EecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhc-CccccEEEe------CCCcc
Q 016998 70 MDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSG-LKWVDEVIA------NAPYA 139 (379)
Q Consensus 70 ~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~-~~~VD~Vv~------~~p~~ 139 (379)
.+|+||++|.||..++++|.+.. |++.+.+...+ ..|. +...+.++|++|++. +...+.+.. .....
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s 78 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS 78 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence 58999999999999999999975 66777665544 2343 455799999999983 333333322 12234
Q ss_pred ccHHHHHHHhhccC-cc-EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC----------------------------C
Q 016998 140 ITEQFMNRLFNEHK-ID-YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT----------------------------E 189 (379)
Q Consensus 140 ~t~efl~~ll~~~~-~d-~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~----------------------------~ 189 (379)
+|-+.++.+-+++. .+ ++++|.|--..-..+..++.+-+...+.+++|. .
T Consensus 79 yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (193)
T TIGR00482 79 YTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHNPRV 158 (193)
T ss_pred CHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcCCcc
Confidence 55677766655552 23 788999954333344455555444444444331 2
Q ss_pred CCCHHHHHHHHHhc
Q 016998 190 GVSSTDIVGRILSS 203 (379)
Q Consensus 190 ~VSST~Ir~rI~~~ 203 (379)
.||||+||+++.++
T Consensus 159 ~iSST~IR~~l~~g 172 (193)
T TIGR00482 159 PISSTEIRQRIRQG 172 (193)
T ss_pred ccCHHHHHHHHHcC
Confidence 59999999999854
No 67
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.25 E-value=3.2e-11 Score=109.80 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=82.3
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCC---EEEEEEecCcchhc---cCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC-
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGD---FLLVGIYTDQIVSE---HRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW- 331 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd---~liVgv~~D~~v~~---~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~- 331 (379)
|++-|+||.+|.||..+|++|+++++ ...|.++-|..... .+....|+++.++|..+++++. ||.|++.+..
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~~f~~ 80 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVLPFDK 80 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEeCCCH
Confidence 67889999999999999999999875 35666665654321 1222368999999999999998 9999985431
Q ss_pred ----CchHHHHHH----cCCcEEEEcCCCCCC-------C----C-CCCCceEEEEeee
Q 016998 332 ----EVTKDMITT----FNICLVVHGTVSETN-------T----P-LTVSLQFLYLPLI 370 (379)
Q Consensus 332 ----~~~~~~i~~----~~~d~vv~G~d~~~~-------~----~-l~~~~evv~lp~~ 370 (379)
....+|++. .+++.+|.|.||... + . .+.+.+++.+|+.
T Consensus 81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~ 139 (180)
T cd02064 81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPV 139 (180)
T ss_pred HHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcE
Confidence 134555554 389999999998632 1 1 2347889999975
No 68
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.24 E-value=1.6e-11 Score=112.05 Aligned_cols=129 Identities=15% Similarity=0.133 Sum_probs=81.2
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cc--cc--EEE-eCCC-cc-
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KW--VD--EVI-ANAP-YA- 139 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~--VD--~Vv-~~~p-~~- 139 (379)
++++|.||++|.||+.++++|.+.+++|+|++.+.+.. +.+ ++.++.+||++|++.. .. +| .+. ...| ..
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~-~~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~~~ 79 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTA-RNI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDHLY 79 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCC-CCC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCCCC
Confidence 57899999999999999999999999999998776432 222 3568999999999874 21 11 222 1111 11
Q ss_pred ccHHHH---HHHhh---ccCccEEEEcCCCCCCCCCchHHH-HHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 140 ITEQFM---NRLFN---EHKIDYIIHGDDPCLLPDGTDAYA-LAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 140 ~t~efl---~~ll~---~~~~d~VV~GdD~~~g~~g~~~y~-~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
.++-+. +.... ..+++++++|.|... ..-|. ...+.+ +..++..+.+|||.||++|..+
T Consensus 80 ~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~----~~~~~~lfpe~~-~~~~p~~~~iSsT~IR~~i~~~ 145 (181)
T cd02168 80 SDNLWLAEVQQQVLEIAGGSASVGLVGHRKDA----SSYYLRSFPQWD-YLEVPNYPDLNATDIRRAYFEG 145 (181)
T ss_pred ChHHHHHHHHHhChHhhCCCCcEEEeCCccCC----CccceeecCCcC-eecCccccccCHHHHHHHHHhc
Confidence 122222 21111 225688999977621 11111 111222 3355555689999999999863
No 69
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.24 E-value=6.1e-11 Score=103.98 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=80.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccEEEeCCC-ccccH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVIANAP-YAITE 142 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv~~~p-~~~t~ 142 (379)
|+++++.|+||++|.||+.++++|.+++|+++|++..++ .| +++++.+||+++++. ++....|-.... -....
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l~v 75 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKLTA 75 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhCCEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCcHH
Confidence 357999999999999999999999999999999988664 34 478999999999964 222222222110 12333
Q ss_pred HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHH-----hCC---eEEE-ecc--CCCCCHHHHHHHHH
Q 016998 143 QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-----KVG---RYKQ-IKR--TEGVSSTDIVGRIL 201 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk-----~~g---~~~~-v~r--~~~VSST~Ir~rI~ 201 (379)
+|. ++.+++++|.|=.-..+. .|+.-. ... +.+. ... ...||||.||+...
T Consensus 76 ~~~----~~~~a~~ivrGlR~~~Df----eyE~~~a~~n~~l~~~ietvfl~~~~~~~~iSSs~vre~~~ 137 (140)
T PRK13964 76 EIA----KKLGANFLIRSARNNIDF----QYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLRHKKF 137 (140)
T ss_pred HHH----HHCCCeEEEEecCCCccH----HHHHHHHHHHHhhcCCCeEEEeecCCCCCEEeHHHHHHHHH
Confidence 554 467999999995431111 133211 111 1111 212 34699999998764
No 70
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.22 E-value=5.8e-11 Score=105.66 Aligned_cols=86 Identities=22% Similarity=0.383 Sum_probs=72.7
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCCCCCchHH
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWEVTKD 336 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~~~~~~~~ 336 (379)
+++++|+|||+|.||+.++++|++.+|.|+++++.+ ..| .+..+.++|+.+++.+ +.-+.+.+...+..|.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~d~v~~~~~~~----p~k---~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKN----PSK---KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhCCEEEEEEcCC----CCC---CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 478999999999999999999999999999999744 334 3788999999999665 55566677666678999
Q ss_pred HHHHcCCcEEEEcC
Q 016998 337 MITTFNICLVVHGT 350 (379)
Q Consensus 337 ~i~~~~~d~vv~G~ 350 (379)
.++.++.+++++|-
T Consensus 74 t~~~l~~~~~i~G~ 87 (155)
T TIGR01510 74 YAKELGATFIVRGL 87 (155)
T ss_pred HHHHcCCCEEEecC
Confidence 99999999999994
No 71
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.22 E-value=5.2e-11 Score=104.23 Aligned_cols=127 Identities=26% Similarity=0.285 Sum_probs=89.2
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc----Ccccc--EEEeCC
Q 016998 63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG----LKWVD--EVIANA 136 (379)
Q Consensus 63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~----~~~VD--~Vv~~~ 136 (379)
.++..|.+.|+||.+|.||..||+.|..+|+.+++|++||+.+..+|..++.+++.|++-|.. ++.-. .+-.+.
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D 82 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD 82 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC
Confidence 456779999999999999999999999999999999999998876666899999999998874 22111 334567
Q ss_pred CccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHH-hCC----eEEEecc-----CCCCCHHHHHHH
Q 016998 137 PYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAK-KVG----RYKQIKR-----TEGVSSTDIVGR 199 (379)
Q Consensus 137 p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk-~~g----~~~~v~r-----~~~VSST~Ir~r 199 (379)
||..+.+ .-..+++|+...-.-++ -..+..+ +.| +++.++. ...+|||+||.-
T Consensus 83 p~G~t~~-------~~~~e~iVVS~ET~~~A---l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 83 PYGPTVE-------DPDFEAIVVSPETYPGA---LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred CCCCCCC-------cCceeEEEEccccchhH---HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence 7765532 12468889886643322 1222222 334 2334443 346999999954
No 72
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.22 E-value=4.5e-11 Score=119.22 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=87.6
Q ss_pred CCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cccc--EEE-eCCCc
Q 016998 63 KKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD--EVI-ANAPY 138 (379)
Q Consensus 63 ~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD--~Vv-~~~p~ 138 (379)
.+.++++++|.||++|.||..++++|.+.+|+|+|++.+.... ..+ +..++.+||++|++.. +.++ .+. ...|-
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~-~~~-~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~d 81 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLA-RSI-KNPFSFEERAQMIRAALAGIDLARVTIRPLRD 81 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCC-CcC-CCCCCHHHHHHHHHHHhhcCCCceEEEEECCC
Confidence 3466899999999999999999999999999999999765422 122 3458999999999864 3222 222 21121
Q ss_pred c-cc-H---HHHHHHhh---ccCccEEEEcCCCCCCCCCchHHHHH-HhCCeEEEeccCCCCCHHHHHHHHHhcc
Q 016998 139 A-IT-E---QFMNRLFN---EHKIDYIIHGDDPCLLPDGTDAYALA-KKVGRYKQIKRTEGVSSTDIVGRILSSM 204 (379)
Q Consensus 139 ~-~t-~---efl~~ll~---~~~~d~VV~GdD~~~g~~g~~~y~~l-k~~g~~~~v~r~~~VSST~Ir~rI~~~~ 204 (379)
. ++ . ..++.... ..++|++++|+|.. +..-|..+ .+.|.. .++..+++|+|.||++|..+-
T Consensus 82 ~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~----~~~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~~ 151 (340)
T PRK05379 82 SLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD----ASSYYLRSFPQWELV-DVPNTEDLSATEIRDAYFEGR 151 (340)
T ss_pred CCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC----CChHHHHhccccccc-cCCcccccCccHHHHHHHcCC
Confidence 1 12 2 22222221 25789999998872 12222222 233333 555668899999999998653
No 73
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.22 E-value=2.3e-10 Score=103.97 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=81.5
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-c--cc--cEE-EeCCC-cc
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-K--WV--DEV-IANAP-YA 139 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~--~V--D~V-v~~~p-~~ 139 (379)
+++++|.||++|.||+.++++|.+.+|+|++++.+... ..+....++.+||++|++.. . .+ +.+ +...| ..
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D~~ 79 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPDIE 79 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCCcc
Confidence 58999999999999999999999999999998865431 12223457889999999843 1 12 122 22222 22
Q ss_pred ccHHHHHHHhhc-cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec--cCCCCCHHHHHHHHHhc
Q 016998 140 ITEQFMNRLFNE-HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--RTEGVSSTDIVGRILSS 203 (379)
Q Consensus 140 ~t~efl~~ll~~-~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~--r~~~VSST~Ir~rI~~~ 203 (379)
..+.+...+... ..+|.++.|+.+ .....+..| ++...+ +...+|+|+||++|.++
T Consensus 80 ~~~~w~~~v~~~~~~~d~v~~~~~y--------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g 139 (174)
T PRK01153 80 FNSIWVSHVESYTPPFDVVYTGNPL--------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG 139 (174)
T ss_pred hHHHHHHHHHHhCCCCCEEEECChH--------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence 333344433222 257889999532 122223444 344444 34689999999999754
No 74
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.20 E-value=1.1e-10 Score=116.54 Aligned_cols=135 Identities=21% Similarity=0.114 Sum_probs=93.9
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcC-ccccEEEe------
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGL-KWVDEVIA------ 134 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~-~~VD~Vv~------ 134 (379)
|++++++|+||++|.||..++++|.+. .|++.+.+...+ +.|. .+..+.++|++|++.. +..+.+..
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 457899999999999999999999986 377877665543 3344 3455569999999742 22222221
Q ss_pred CCCccccHHHHHHHhhccCcc---EEEEcCCCCCCCCCchHHHHHHhCCeEEEeccC--------------------CCC
Q 016998 135 NAPYAITEQFMNRLFNEHKID---YIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRT--------------------EGV 191 (379)
Q Consensus 135 ~~p~~~t~efl~~ll~~~~~d---~VV~GdD~~~g~~g~~~y~~lk~~g~~~~v~r~--------------------~~V 191 (379)
.....+|-+.++.+.+++ |+ ++++|.|.-..-..+..++.+-+...+.+++|. ..|
T Consensus 78 ~~~~syt~~tl~~l~~~~-p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~i 156 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKY-PNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLNI 156 (342)
T ss_pred CCCCCcHHHHHHHHHHhC-CCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCCCCcccccccCcEEEecCCcccc
Confidence 122344556666555555 33 889999976555567777777777777777662 249
Q ss_pred CHHHHHHHHHhc
Q 016998 192 SSTDIVGRILSS 203 (379)
Q Consensus 192 SST~Ir~rI~~~ 203 (379)
|||+||+++..+
T Consensus 157 SST~IR~~~~~~ 168 (342)
T PRK07152 157 SSTKIRKGNLLG 168 (342)
T ss_pred CHHHHHHHHHcC
Confidence 999999999865
No 75
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.20 E-value=5.5e-11 Score=106.79 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=79.5
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcC----ceEe--CCCC
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD----EVII--GAPW 331 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd----~Vii--~~~~ 331 (379)
.++.|+|||||.||+.++++|++.+|.|+|+|.++.... +. .+-++.+||..+++ +++.+| .|.+ ....
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d~l~v~v~s~~~~~--~~--~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVDELIIGIGSAQESH--TL--ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCEEEEEecCCCCCC--CC--CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC
Confidence 578999999999999999999999999999998775432 22 23468899999997 668875 3333 2222
Q ss_pred CchHHHHHHc------CCcEEEEcCCCCCCCCCCCCceEEEEeee
Q 016998 332 EVTKDMITTF------NICLVVHGTVSETNTPLTVSLQFLYLPLI 370 (379)
Q Consensus 332 ~~~~~~i~~~------~~d~vv~G~d~~~~~~l~~~~evv~lp~~ 370 (379)
. ..+...++ +.|+++-|.++......+.+++++.+|++
T Consensus 78 ~-~~~~w~~~v~~~vp~~div~~g~~~~~~~f~~~g~~v~~~p~~ 121 (163)
T cd02166 78 E-RNSLWVSYVESLTPPFDVVYSGNPLVARLFKEAGYEVRRPPMF 121 (163)
T ss_pred C-chHHHHHHHHHHCCCCCEEEECchHHHHhhhhcCCeEecCCcc
Confidence 2 23444444 78999999765554555678999999985
No 76
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.18 E-value=2.2e-11 Score=101.13 Aligned_cols=85 Identities=25% Similarity=0.284 Sum_probs=70.9
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCCCchHHH
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDM 337 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~~~~~~~ 337 (379)
++++.|+||++|.||+.++++|++++|.+++++.++.... .+ .++.++++|...++++
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~---~~-~~~~~~~~R~~~l~~~------------------ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVK---VW-QDPHELEERKESIEED------------------ 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCccc---cc-CChHHHHHHHHHHHHH------------------
Confidence 3788999999999999999999999999999999886543 22 3689999999999988
Q ss_pred HHHcCCcEEEEcCCCCCC----------CCCCCCceEEEEeeec
Q 016998 338 ITTFNICLVVHGTVSETN----------TPLTVSLQFLYLPLIN 371 (379)
Q Consensus 338 i~~~~~d~vv~G~d~~~~----------~~l~~~~evv~lp~~~ 371 (379)
++++|.+|..+ ..+..++|++++|+.+
T Consensus 59 -------~~~~G~~~~~~~~~e~~~~~n~~l~~~~e~v~~~~~~ 95 (105)
T cd02156 59 -------ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLN 95 (105)
T ss_pred -------HHHHHhhhhhchhHHHHHHHhcCCCCCCeEEEccccc
Confidence 77888766543 2466789999999966
No 77
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.16 E-value=3.5e-10 Score=101.12 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=80.2
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccccEE-E-----eCCCccc
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEV-I-----ANAPYAI 140 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~V-v-----~~~p~~~ 140 (379)
++++|+||++|.||+.++++|.+.+|+|+|++.+.+.. + ..+..++.++|++|++.. ...+.+ + .+.|+..
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~~-~-~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~~~ 79 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDTR-D-DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPEYP 79 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCcc-c-ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCc
Confidence 57899999999999999999999999999999887632 1 125678999999999853 221112 1 1223211
Q ss_pred --cH---HHHHHHhhc---cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEe--cc-CCCCCHHHHHHHHH
Q 016998 141 --TE---QFMNRLFNE---HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQI--KR-TEGVSSTDIVGRIL 201 (379)
Q Consensus 141 --t~---efl~~ll~~---~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v--~r-~~~VSST~Ir~rI~ 201 (379)
-. ..++..+.+ .++|.++.|+++. ...+......| +...+ .+ ...+|+|.||+-..
T Consensus 80 ~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~-----~~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~ 147 (158)
T cd02167 80 NGWDIWSNRVKTLIAENTRCRPDIVFTAEEYE-----AAFELVLAYLGAQVVLVDPDRTDISVSATQIRENPF 147 (158)
T ss_pred hhHHHHHHHHHHHHhhhcCCCCCEEEEccCcc-----hhhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHH
Confidence 11 223333332 1688999998762 11211123333 33332 23 45799999998654
No 78
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.03 E-value=4.6e-10 Score=98.82 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=77.0
Q ss_pred EEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCc------CceEeCCC
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV------DEVIIGAP 330 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V------d~Vii~~~ 330 (379)
|++.|+||++|.||..+|++|.+++ |.++||+++|+.... |....+++++++|+.+++.+ ... +-+-+.+|
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~-k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~ 80 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKN-KSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP 80 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhccc-CCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence 7899999999999999999999998 899999999985433 32224699999999888766 222 23344677
Q ss_pred CCchHHHHHHcCCcEEEEcCCCCCC----------CCCCCCceEEEEeeecc
Q 016998 331 WEVTKDMITTFNICLVVHGTVSETN----------TPLTVSLQFLYLPLINY 372 (379)
Q Consensus 331 ~~~~~~~i~~~~~d~vv~G~d~~~~----------~~l~~~~evv~lp~~~~ 372 (379)
++.+.. .-++|.+|-..+.... .-+ .-++++..|+..+
T Consensus 81 ~Gpt~~---~~~~d~lVVS~ET~~~~~~iN~~R~~~gl-~pl~i~~v~~v~~ 128 (143)
T cd02164 81 YGPTGT---DPDLEAIVVSPETYPGALKINRKREENGL-SPLEIVVVPLVKA 128 (143)
T ss_pred CCCccc---CCCCCEEEEcHHHhhhHHHHHHHHHHCCC-CceeEEEEEeecc
Confidence 776532 3568888877553322 112 3567777776643
No 79
>PRK13670 hypothetical protein; Provisional
Probab=99.02 E-value=8.7e-10 Score=111.73 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=73.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCC-eEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCcccc---
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALGD-ELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAIT--- 141 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d-~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t--- 141 (379)
+.+=++-=|||+|.||+.+|++|++.+. .++++|.|-..+.+ ..+.+++.++|.+++..+ +||.|++ .||.+.
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g~p~i~~~~~R~~~a~~~-GvD~vie-lpf~~a~~s 78 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-GEPAIVDKWTRAKMALEN-GVDLVVE-LPFLYSVQS 78 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-CCCCCCCHHHHHHHHHHc-CCCEEEE-eCCchHhCC
Confidence 3455566699999999999999999763 34555555554433 226699999999999997 9999998 666554
Q ss_pred -HHHHHH---HhhccCccEEEEcCC
Q 016998 142 -EQFMNR---LFNEHKIDYIIHGDD 162 (379)
Q Consensus 142 -~efl~~---ll~~~~~d~VV~GdD 162 (379)
++|++. ++.+++++++|+|.|
T Consensus 79 ae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 79 ADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred HHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 479887 778899999999999
No 80
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.02 E-value=4.4e-09 Score=107.13 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=84.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh-----hccCCCCCCCHHHHHHHHhcC-ccccEEE-e---
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI-----IANKGPPVLSMEERLALVSGL-KWVDEVI-A--- 134 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i-----~~~K~~pi~t~eER~~~l~~~-~~VD~Vv-~--- 134 (379)
.++++++|.|||+|.||+.+|++|.+++|+|+|+|.+++.- ...|.+..++.++|.++++.. +..+.|. .
T Consensus 52 ~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~~~~ 131 (399)
T PRK08099 52 KKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIHAFN 131 (399)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEEecC
Confidence 35799999999999999999999999999999988877631 111225688999999999864 2322121 1
Q ss_pred --CCC-cccc-H---HHHHHHhhc--cCccEEEEcCCCCCCCCCchHHHHHHhCC-eEEEec--c-CCCCCHHHHHHHHH
Q 016998 135 --NAP-YAIT-E---QFMNRLFNE--HKIDYIIHGDDPCLLPDGTDAYALAKKVG-RYKQIK--R-TEGVSSTDIVGRIL 201 (379)
Q Consensus 135 --~~p-~~~t-~---efl~~ll~~--~~~d~VV~GdD~~~g~~g~~~y~~lk~~g-~~~~v~--r-~~~VSST~Ir~rI~ 201 (379)
+.| +... . +-++..+.+ .++++++.|.++ +...| ++..| +...++ | ..+||+|.||+--.
T Consensus 132 ~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~-----d~~~~--~~~~~~~~~~vd~~r~~~~iSaT~IR~~p~ 204 (399)
T PRK08099 132 EEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQ-----DAPQY--EEHLGIETVLVDPKRTFMNISGTQIRENPF 204 (399)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCC-----ChHHH--HHhcCCceeeeccccccCCcCHHHHhhCHH
Confidence 112 2111 1 223333332 268999999776 12334 34333 344343 3 35799999998654
No 81
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.00 E-value=1.5e-09 Score=95.74 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=83.4
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-ccccEEEeCCCccccHH
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVDEVIANAPYAITEQ 143 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD~Vv~~~p~~~t~e 143 (379)
+++++..|+||+++.||+.+|++|.++.|+++|+|..++ .| +|+++.+||.++++.. +..+.|-.. .+ + .
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~-~f--~-~ 72 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVV-GF--S-G 72 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhccEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEE-ec--c-c
Confidence 568999999999999999999999999999999998765 34 7999999999999853 222222221 11 1 2
Q ss_pred HHHHHhhccCccEEEEcCCCCCCCCCchH-HHHHHh-----C-Ce---EEEeccC--CCCCHHHHHHHHHhc
Q 016998 144 FMNRLFNEHKIDYIIHGDDPCLLPDGTDA-YALAKK-----V-GR---YKQIKRT--EGVSSTDIVGRILSS 203 (379)
Q Consensus 144 fl~~ll~~~~~d~VV~GdD~~~g~~g~~~-y~~lk~-----~-g~---~~~v~r~--~~VSST~Ir~rI~~~ 203 (379)
++-++.++.++..+|-|=- ...|- |+.--. . .+ +...+.. .-||||-+|+-..-+
T Consensus 73 Llvd~ak~~~a~~ivRGLR-----~~sDfeYE~qma~~N~~L~~eveTvFl~~s~~~~~iSSs~Vreia~~g 139 (159)
T COG0669 73 LLVDYAKKLGATVLVRGLR-----AVSDFEYELQMAHMNRKLAPEVETVFLMPSPEYSFISSSLVREIAAFG 139 (159)
T ss_pred HHHHHHHHcCCCEEEEecc-----ccchHHHHHHHHHHHHhhcccccEEEecCCcceehhhHHHHHHHHHhC
Confidence 4444446789999999932 22221 332111 1 11 2222222 359999999876643
No 82
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.99 E-value=2e-09 Score=105.83 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=83.3
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEE---EEEEecCcchhcc---CCCCCCCCCHHHHHHHHHHccCcCceEeCCCC
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFL---LVGIYTDQIVSEH---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPW 331 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~l---iVgv~~D~~v~~~---Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~ 331 (379)
.|++-|.||.+|.||..+|++|+++++.+ .+.++-|...... +....++++.+||...+++|. ||.+++.+..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~~F~ 93 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVLPFD 93 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEecCC
Confidence 79999999999999999999999998754 3455555433321 222368999999999999998 9999984421
Q ss_pred -----CchHHHHHH-----cCCcEEEEcCCCCCC-------CC-----CCCCceEEEEeee
Q 016998 332 -----EVTKDMITT-----FNICLVVHGTVSETN-------TP-----LTVSLQFLYLPLI 370 (379)
Q Consensus 332 -----~~~~~~i~~-----~~~d~vv~G~d~~~~-------~~-----l~~~~evv~lp~~ 370 (379)
....+|+++ ++++.+|.|.||-.. +. ...+.+++.+|..
T Consensus 94 ~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~ 154 (305)
T PRK05627 94 EEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEV 154 (305)
T ss_pred HHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccE
Confidence 145677764 899999999998632 11 1236888888764
No 83
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.98 E-value=7.5e-10 Score=97.02 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=82.1
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc----cC-cC-ceEeC
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----RY-VD-EVIIG 328 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~----~~-Vd-~Vii~ 328 (379)
...+|.+.|+||.+|.||..||+.|...|+.+++|++||+.+.++|. +++.|++.|...|... +. -+ -|-+.
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~--~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~ 81 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKK--EKIEPYEVRLRNLRNFLESIKADYEEIVPID 81 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHhCCeEEEEEccHHHHHHhcc--ccCCcHHHHHHHHHHHHHHhcCCcceEEEec
Confidence 35789999999999999999999999999999999999999988654 6999999999776543 21 11 34457
Q ss_pred CCCCchHHHHHHcCCcEEEEcCCCCCC---------CCCCCCceEEEEeeecc
Q 016998 329 APWEVTKDMITTFNICLVVHGTVSETN---------TPLTVSLQFLYLPLINY 372 (379)
Q Consensus 329 ~~~~~~~~~i~~~~~d~vv~G~d~~~~---------~~l~~~~evv~lp~~~~ 372 (379)
+|++.+. +.-..|++|...+.... +.=-+-++++.+|+..+
T Consensus 82 Dp~G~t~---~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~a 131 (158)
T COG1019 82 DPYGPTV---EDPDFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLA 131 (158)
T ss_pred CCCCCCC---CcCceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhh
Confidence 7777653 23356777766543322 11113477888877643
No 84
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=98.91 E-value=1.1e-08 Score=91.54 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=73.0
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeC---CCCCc-
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIG---APWEV- 333 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~---~~~~~- 333 (379)
.++.|+|||+|.||+.++++|.+.+|.|+|.+.++.. .|.+ ++.++.++|..+++.. +.-+.+.+. .+...
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d~v~vi~~~~~~---~~~~-~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~ 77 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVDELLIIVGSDDT---RDDA-RTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPE 77 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc---cccc-CCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCC
Confidence 5789999999999999999999999999999998853 2322 4567999999888544 664555441 11111
Q ss_pred --------h---HHHHHHc---CCcEEEEcCCCCCCC---CCCCCceEEEE
Q 016998 334 --------T---KDMITTF---NICLVVHGTVSETNT---PLTVSLQFLYL 367 (379)
Q Consensus 334 --------~---~~~i~~~---~~d~vv~G~d~~~~~---~l~~~~evv~l 367 (379)
. ...+.+. ++|+++-|.+..... ....+.+++..
T Consensus 78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~v 128 (158)
T cd02167 78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAEEYEAAFELVLAYLGAQVVLV 128 (158)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCCEEEEccCcchhhhhHhhcCCCeEEEe
Confidence 1 2333322 789999997765443 24457788775
No 85
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.87 E-value=1.5e-08 Score=95.67 Aligned_cols=84 Identities=17% Similarity=0.140 Sum_probs=50.3
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCC--e-E-EE-EE-ccchhhhccCCCCCCCHHHHHHHHhc-CccccEEE------
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGD--E-L-VV-GV-VSDEEIIANKGPPVLSMEERLALVSG-LKWVDEVI------ 133 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d--~-L-iV-gV-~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~Vv------ 133 (379)
..+..|+||++|.||+.++++|.+..+ . + ++ ++ .+.. ....| ....+.++|++|++. +.....+.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~ 79 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVN-DAYGK-KGLASAKHRVAMCRLAVQSSDWIRVDDWES 79 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeec-cCCCC-CCCCCHHHHHHHHHHHHccCCCEEEEehhc
Confidence 357889999999999999999988753 2 1 22 11 1211 11123 567899999999983 22222222
Q ss_pred eCCCccccHHHHHHHhhcc
Q 016998 134 ANAPYAITEQFMNRLFNEH 152 (379)
Q Consensus 134 ~~~p~~~t~efl~~ll~~~ 152 (379)
....+.+|-+.++.+.+++
T Consensus 80 ~~~~~syT~~TL~~l~~~~ 98 (225)
T cd09286 80 LQPEWMRTAKVLRHHREEI 98 (225)
T ss_pred cCCccccHHHHHHHHHHHh
Confidence 2222334556666655555
No 86
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.86 E-value=2.3e-08 Score=95.03 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=57.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeE-EE--EEccchhhhccCCCCCCCHHHHHHHHh-cCccccE------EE
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALG--DEL-VV--GVVSDEEIIANKGPPVLSMEERLALVS-GLKWVDE------VI 133 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~L-iV--gV~sd~~i~~~K~~pi~t~eER~~~l~-~~~~VD~------Vv 133 (379)
...+.+|+||++|.||+.+++.|++.- +.+ +| .+.+.. ....| ....+.++|++|++ ++..... -+
T Consensus 23 ~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~-~~~~k-~~~~~~~~Rl~Ml~lai~~~~~~~V~~~E~ 100 (236)
T PLN02945 23 VVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVN-DAYKK-KGLASAEHRIQMCQLACEDSDFIMVDPWEA 100 (236)
T ss_pred EEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCC-ccccc-CCCCCHHHHHHHHHHHhcCCCCeEecHHHh
Confidence 345777899999999999999888864 332 23 233211 11122 35779999999997 2222221 12
Q ss_pred eCCCccccHHHHHHHhhccC-------c--c-EEEEcCCC
Q 016998 134 ANAPYAITEQFMNRLFNEHK-------I--D-YIIHGDDP 163 (379)
Q Consensus 134 ~~~p~~~t~efl~~ll~~~~-------~--d-~VV~GdD~ 163 (379)
....+..|-+.++.+.++++ + + ++++|.|.
T Consensus 101 ~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 101 RQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred CCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 22223445566665555552 2 3 78999993
No 87
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=98.82 E-value=4.4e-09 Score=102.02 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=87.0
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEeCCCcccc
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT 141 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t 141 (379)
--.|.|.|. +|.||+.||++|++.++.++|.+..+|.-... .. +.+.+.++|.++++.. +||.++.....++.
T Consensus 24 ig~V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~ 99 (277)
T cd00560 24 IGFVPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMY 99 (277)
T ss_pred EEEEECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcC
Confidence 345779999 99999999999999999999999888764221 22 4588899999999997 89998642222222
Q ss_pred -HHHHHHHhhccCccEEEEcC----------------------C-CCCCCCCchHHHHHHhCCe
Q 016998 142 -EQFMNRLFNEHKIDYIIHGD----------------------D-PCLLPDGTDAYALAKKVGR 181 (379)
Q Consensus 142 -~efl~~ll~~~~~d~VV~Gd----------------------D-~~~g~~g~~~y~~lk~~g~ 181 (379)
++|+..+.+..++..+++|. | ++||.++.+....+++.++
T Consensus 100 p~~f~~~~v~~~~~~~il~G~~RpghF~GV~tvv~kLf~iv~Pd~~~FG~kd~gq~~~Lk~~~~ 163 (277)
T cd00560 100 PEGLFSTFVDVGPLSEVLEGASRPGHFRGVATVVAKLFNLVQPDRAYFGEKDAQQLAVIRRMVR 163 (277)
T ss_pred CCCCceEEEecCCCceEEecCCCCccccceeeeehhhhcccCCCeEEECCCccccHHHHHHHHH
Confidence 35554233557889999999 9 9999999999988888754
No 88
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.79 E-value=7.7e-08 Score=95.79 Aligned_cols=129 Identities=21% Similarity=0.203 Sum_probs=88.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-CccccE--EEeCCCcccc
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVDE--VIANAPYAIT 141 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~~~VD~--Vv~~~p~~~t 141 (379)
.+++...|+||++|.||+.++++|.+++|.++|.|..+ + +++++.++|++|++. ++..+. |+...+|-++
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~is 211 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYIIS 211 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCceec
Confidence 46899999999999999999999999999999988632 2 579999999999985 222221 2222223221
Q ss_pred H------------------------HHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHh----------CCeEEEecc
Q 016998 142 E------------------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKK----------VGRYKQIKR 187 (379)
Q Consensus 142 ~------------------------efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~----------~g~~~~v~r 187 (379)
. -|-+.+-..+++..-.+|+.+..-. +..|..... .-+..+++|
T Consensus 212 ~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~--t~~yn~~m~~~~~~~~~~~~I~~~~I~R 289 (332)
T TIGR00124 212 RATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV--TALYNQKMKYWLEEPNDAPPIEVVEIQR 289 (332)
T ss_pred cccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh--HHHHHHHHHHhhhccCCCCCcEEEEEee
Confidence 0 1222244568888999999985533 234543221 235678888
Q ss_pred C----CCCCHHHHHHHHHh
Q 016998 188 T----EGVSSTDIVGRILS 202 (379)
Q Consensus 188 ~----~~VSST~Ir~rI~~ 202 (379)
. ..+|.|.||+.|.+
T Consensus 290 ~~~~~~~~SASaIR~~L~~ 308 (332)
T TIGR00124 290 KLAAGGPISASTVRELLAK 308 (332)
T ss_pred ecCCCCeeCHHHHHHHHHc
Confidence 3 35899999999964
No 89
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=98.77 E-value=7e-09 Score=100.89 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=82.9
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEeCCCcccc-H
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIANAPYAIT-E 142 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t-~ 142 (379)
-|.++|+ +|.||+.+|++|++.++.++|++.++|.-... .. +.++|.++|.++++.+ +||.++....-++. +
T Consensus 26 ~v~tmG~---lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p~~~~myp~ 101 (281)
T PRK00380 26 LVPTMGA---LHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAPSVEEMYPQ 101 (281)
T ss_pred EEEccCc---eeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeCCHHHCCCc
Confidence 3567777 99999999999999999888888888764222 22 4588999999999997 89999874222222 2
Q ss_pred HHHHHHhhccCccEEEEcC----------------------CC-CCCCCCchHHHHHHhCCe
Q 016998 143 QFMNRLFNEHKIDYIIHGD----------------------DP-CLLPDGTDAYALAKKVGR 181 (379)
Q Consensus 143 efl~~ll~~~~~d~VV~Gd----------------------D~-~~g~~g~~~y~~lk~~g~ 181 (379)
+|...++.. ++..+++|. |+ .||.++.+....+++.++
T Consensus 102 ~f~~~i~~~-~~~~vl~G~~RpghF~Gv~tvv~kLf~iv~Pd~a~FG~kd~qq~~~l~~~~~ 162 (281)
T PRK00380 102 GLQTYVSVP-GLSDVLEGASRPGHFRGVATVVTKLFNIVQPDVAYFGEKDYQQLAVIRRMVA 162 (281)
T ss_pred cceeEEEcc-cccccccCCCCCccccchhhHHHHHhhccCCCeeEECCCcchhHHHHHHHHH
Confidence 454433222 377899999 99 999999999888887653
No 90
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.75 E-value=1.1e-08 Score=84.93 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=49.7
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~ 126 (379)
+++.|+||++|.||+.++++|+++++.+++++..++.... + .++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIADQCVVRIDDNPPVKV-W-QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988775432 2 3689999999999985
No 91
>PRK07143 hypothetical protein; Provisional
Probab=98.74 E-value=9.4e-08 Score=92.98 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=76.8
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC---
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW--- 331 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~--- 331 (379)
....|++-|.||-+|.||..+|++|++.++.++|...+++... .++...++++++||...++++. +|.+++.+..
T Consensus 14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~~~~vV~tF~~P~~~-~~~~~~~l~~~~er~~~l~~~G-vd~~~~~~F~~~~ 91 (279)
T PRK07143 14 FEKPTFVLGGFESFHLGHLELFKKAKESNDEIVIVIFKNPENL-PKNTNKKFSDLNSRLQTLANLG-FKNIILLDFNEEL 91 (279)
T ss_pred CCCeEEEEccCCcCCHHHHHHHHHHHHCCCcEEEEEeCChHHh-cccCcccCCCHHHHHHHHHHCC-CCEEEEeCCCHHH
Confidence 3567899999999999999999999999999988888764322 1222357999999999999984 6888775421
Q ss_pred --CchHHHHHH---cCCcEEEEcCCCCC
Q 016998 332 --EVTKDMITT---FNICLVVHGTVSET 354 (379)
Q Consensus 332 --~~~~~~i~~---~~~d~vv~G~d~~~ 354 (379)
-..++|++. ++++.+|.|.|+--
T Consensus 92 a~ls~e~Fi~~ll~l~~~~iVvG~Df~F 119 (279)
T PRK07143 92 QNLSGNDFIEKLTKNQVSFFVVGKDFRF 119 (279)
T ss_pred hCCCHHHHHHHHHhcCCCEEEECCCccc
Confidence 144667665 79999999999774
No 92
>PRK13671 hypothetical protein; Provisional
Probab=98.71 E-value=7e-08 Score=94.47 Aligned_cols=90 Identities=24% Similarity=0.402 Sum_probs=71.2
Q ss_pred EEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCcccc----
Q 016998 69 YMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT---- 141 (379)
Q Consensus 69 ~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t---- 141 (379)
=++-.||++|.||..++++|++. +|.+++.+..++ ..|+ +.+++.++|.+|++.+ +||.|++ -|+.+.
T Consensus 4 GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~pa~~~~~~R~~ma~~~-G~DLViE-LP~~~a~~sA 78 (298)
T PRK13671 4 GIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGEIAVASFEKRKKIALKY-GVDKVIK-LPFEYATQAA 78 (298)
T ss_pred eEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCCCCCCCHHHHHHHHHHc-CCCEEEe-ccHHHHhhch
Confidence 35567999999999999999997 477888776665 3455 6677999999999998 8999997 555443
Q ss_pred HHHHH---HHhhccCccEEEEcCCC
Q 016998 142 EQFMN---RLFNEHKIDYIIHGDDP 163 (379)
Q Consensus 142 ~efl~---~ll~~~~~d~VV~GdD~ 163 (379)
+.|.. .++.++++|.++.|.++
T Consensus 79 e~FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 79 HIFAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 24432 37788999999999876
No 93
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.70 E-value=6.5e-08 Score=89.27 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=50.5
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~ 126 (379)
....+++|-|.++|.||.++|++|.+.||+|+|++.|....... +.-+|..||..|++..
T Consensus 4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a 63 (196)
T PRK13793 4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNI--KNPFLAIEREQMILSN 63 (196)
T ss_pred eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence 34689999999999999999999999999999999996543221 4567899999999864
No 94
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.68 E-value=1.4e-07 Score=94.21 Aligned_cols=97 Identities=18% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcC--ceEeCC-C
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVD--EVIIGA-P 330 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd--~Vii~~-~ 330 (379)
..+++++.|+||+||.||+.++++|++.+|.|+|++.+.......| +| ++.+||..+++.+ +.+| .|.+.+ +
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~d~l~v~i~s~~~~~~~~---~~-~~~~~R~~mi~~~~~~~~~~r~~~~pi~ 80 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIK---NP-FSFEERAQMIRAALAGIDLARVTIRPLR 80 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEEccCCCCCcCC---CC-CCHHHHHHHHHHHhhcCCCceEEEEECC
Confidence 4678999999999999999999999999999999998764322222 35 7999999999666 5444 333321 1
Q ss_pred CCc-----hHHHHHH-------cCCcEEEEcCCCCCC
Q 016998 331 WEV-----TKDMITT-------FNICLVVHGTVSETN 355 (379)
Q Consensus 331 ~~~-----~~~~i~~-------~~~d~vv~G~d~~~~ 355 (379)
... -...+++ -++|+++.|.|++.+
T Consensus 81 d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~~ 117 (340)
T PRK05379 81 DSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDAS 117 (340)
T ss_pred CCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCCC
Confidence 111 1112221 478999999777544
No 95
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=98.67 E-value=3.4e-08 Score=90.32 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=47.7
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (379)
.++.|+|||||.||+.++++|.+.+|.|+|+|.+..... .+ ++.++.+||..+++.+
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~~vii~i~s~~~~~-~~---~~p~~~~eR~~mi~~~ 58 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAKKVIILIGSARTAR-NI---KNPWTSEEREVMIEAA 58 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCCeEEEEeCCCCCCC-CC---CCCcCHHHHHHHHHHH
Confidence 578999999999999999999999999999998775422 22 2457999999999775
No 96
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.67 E-value=4.1e-08 Score=89.31 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cC------c
Q 016998 251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY------V 322 (379)
Q Consensus 251 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~------V 322 (379)
.+......|++.|+||.+|.||..+|++|.+++ +.++||+++|+...+ |.....++++++|...++++ .. +
T Consensus 14 ~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~-k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~ 92 (177)
T PLN02388 14 SPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSK-KQFAELIQPIEERMHNVEEYIKSIKPELVV 92 (177)
T ss_pred CCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcc-cCCCcccCCHHHHHHHHHHHHHHcCCCceE
Confidence 333346789999999999999999999999998 489999999987643 33235799999999888766 22 2
Q ss_pred CceEeCCCCCchHHHHHHcCCcEEEEcCCCC
Q 016998 323 DEVIIGAPWEVTKDMITTFNICLVVHGTVSE 353 (379)
Q Consensus 323 d~Vii~~~~~~~~~~i~~~~~d~vv~G~d~~ 353 (379)
+-+-+.+|++.+. ..-++|.+|.+.+..
T Consensus 93 ~i~~i~D~~Gpt~---~~~~~d~LVVS~ET~ 120 (177)
T PLN02388 93 QAEPIIDPYGPSI---VDENLEAIVVSKETL 120 (177)
T ss_pred EEEEecCCCCCcc---cCCCCCEEEEcHhHh
Confidence 2344567788763 245788888886533
No 97
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.64 E-value=1.3e-07 Score=87.53 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=75.8
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeC----
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIG---- 328 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~---- 328 (379)
+++++++|+||++|.||+.++++|++.. |.+++..+... ..|.. ....+.++|+.+++ +++..+.+.+.
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~---~~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGP---PHKPQ-KPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 4789999999999999999999999866 78887776653 22322 36889999998884 55777776664
Q ss_pred --CCCCchHHHHHHc---CCc---EEEEcCCCCCC-------CCCCCCceEEEEeee
Q 016998 329 --APWEVTKDMITTF---NIC---LVVHGTVSETN-------TPLTVSLQFLYLPLI 370 (379)
Q Consensus 329 --~~~~~~~~~i~~~---~~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~ 370 (379)
.....|.+.++.+ .|+ +++.|.|.-.. +.+-..++++.+|+.
T Consensus 80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~ 136 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRP 136 (203)
T ss_pred hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCC
Confidence 1234455555543 355 78899763222 223335666666664
No 98
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=98.63 E-value=7.1e-08 Score=88.46 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=73.7
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCC-----
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGA----- 329 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~----- 329 (379)
+++++|+|||+|.||+.+++.|++.+ |.|++....+. ..|+ .+..+.++|+.+++.+ +..+.+.+..
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~---~~k~--~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP---PHKP--PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCC--CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 46889999999999999999999998 99999876653 2343 4778999999999655 5666666632
Q ss_pred -CCCchHHHHHHc---CCc---EEEEcCCCC-------CCCCCCCCceEEEEeee
Q 016998 330 -PWEVTKDMITTF---NIC---LVVHGTVSE-------TNTPLTVSLQFLYLPLI 370 (379)
Q Consensus 330 -~~~~~~~~i~~~---~~d---~vv~G~d~~-------~~~~l~~~~evv~lp~~ 370 (379)
....|.+.++.+ .++ +++.|.|.- ..+.+-..+.++.+++.
T Consensus 76 ~~~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~ 130 (192)
T cd02165 76 DGPSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRP 130 (192)
T ss_pred CCCCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCC
Confidence 124455555444 343 677897632 22233335566666654
No 99
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.62 E-value=1.6e-07 Score=85.27 Aligned_cols=107 Identities=22% Similarity=0.257 Sum_probs=69.9
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cC--c--CceEeCC-C-
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RY--V--DEVIIGA-P- 330 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~--V--d~Vii~~-~- 330 (379)
.+++.|+|||||.||+.++++|.+.+|.|+|+|.+... ..+.+ +| ++.+||..+++.. +. + +.+.+.+ +
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~d~v~v~i~s~~~--~~~~~-~p-~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQE--SHTLK-NP-FTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhCCEEEEEecCCCC--CCCCC-CC-CCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 47889999999999999999999999999999975432 11221 34 6899999888644 32 2 2344432 1
Q ss_pred CCchHHHHHHc-----CCcEEEEcCCCCCCCCCCCCceEEEEe
Q 016998 331 WEVTKDMITTF-----NICLVVHGTVSETNTPLTVSLQFLYLP 368 (379)
Q Consensus 331 ~~~~~~~i~~~-----~~d~vv~G~d~~~~~~l~~~~evv~lp 368 (379)
........... .+|+++-|..+-.....+.+.+++-.|
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~~y~~~~f~~~g~~v~~~p 120 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGNPLVARLFREAGYEVRQPP 120 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECChHHHHhchhhCCeEecCC
Confidence 12233333333 679999886433333445566666665
No 100
>PRK13671 hypothetical protein; Provisional
Probab=98.49 E-value=4.2e-07 Score=89.01 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=69.2
Q ss_pred CccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC-CC-c-----
Q 016998 263 GAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-WE-V----- 333 (379)
Q Consensus 263 G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~-~~-~----- 333 (379)
-+|||||.||+.++++|++. .|.+|+....|. ..||. .++++..+|+++++.+ .||-|+--+. +. .
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~---~qrg~-pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY---TQRGE-IAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC---CCCCC-CCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHHH
Confidence 47999999999999999987 588888887775 34554 5677999999999998 8998884321 11 2
Q ss_pred ---hHHHHHHcCCcEEEEcCCCCC
Q 016998 334 ---TKDMITTFNICLVVHGTVSET 354 (379)
Q Consensus 334 ---~~~~i~~~~~d~vv~G~d~~~ 354 (379)
...++.+.++|.++-|+++..
T Consensus 82 A~gaV~lL~~lgvd~l~FGsE~~d 105 (298)
T PRK13671 82 AKGAIKKLNKEKIDKLIFGSESND 105 (298)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC
Confidence 457889999999999988754
No 101
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.48 E-value=4e-07 Score=90.72 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG 328 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~ 328 (379)
++++..+.|+|||||.||+.++++|.+++|.++|+|..+ + .+.++.++|..++ ++++..++|.+.
T Consensus 138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~~~------~---~~~f~~~~R~~~v~~~~~~~~nv~v~ 203 (332)
T TIGR00124 138 GNKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFVVKE------D---ASLFSYDERFALVKQGIQDLSNVTVH 203 (332)
T ss_pred CCcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEEEeC------C---CCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999999999999999999999632 2 4799999999888 455777776653
No 102
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.46 E-value=3.7e-07 Score=84.32 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=51.0
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (379)
..+.++.|.|.|||.||++.+++|.+.+|+|||||.|.+.....| +|+ +..||..++...
T Consensus 4 yd~~v~iGRFQPfH~GHl~~I~~al~~~devII~IGSA~~s~t~~---NPF-Ta~ER~~MI~~a 63 (196)
T PRK13793 4 FDYLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIK---NPF-LAIEREQMILSN 63 (196)
T ss_pred eeEEEEEecCCCCcHHHHHHHHHHHHhCCEEEEEEccCCCCCCCC---CCC-CHHHHHHHHHHh
Confidence 457889999999999999999999999999999999986544433 565 899999888665
No 103
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.46 E-value=3.6e-07 Score=90.78 Aligned_cols=58 Identities=24% Similarity=0.144 Sum_probs=48.8
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~ 125 (379)
+++++.|+||++|.||+.++++|.+++|+|+|.+.+.+. ..|..+..+.++|++|++.
T Consensus 2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~~--~~~~~~~~~~~~R~~~l~~ 59 (325)
T TIGR01526 2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLFY--DSKAKRPPPVQDRLRWLRE 59 (325)
T ss_pred cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCCc--CccCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999998876321 1133678899999999975
No 104
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.46 E-value=4.3e-07 Score=90.20 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=54.3
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCc-eEe
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDE-VII 327 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~-Vii 327 (379)
+++++.|+|||+|.||+.++++|.+++|.|+|.+.+.. ..+.+ .+.++.++|+.++ ++++.... |.+
T Consensus 2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~d~v~v~~~~~~---~~~~~-~~~~~~~~R~~~l~~~~~~~~~~v~v 70 (325)
T TIGR01526 2 TIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVGSLF---YDSKA-KRPPPVQDRLRWLREIFKYQKNQIFI 70 (325)
T ss_pred cEEEEeeccCCCCHHHHHHHHHHHHHCCEEEEEECCCC---cCccC-CCCCCHHHHHHHHHHHhccCCCeEEE
Confidence 57899999999999999999999999999999997632 12111 5788999999988 55587777 554
No 105
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.42 E-value=8.8e-07 Score=83.45 Aligned_cols=137 Identities=25% Similarity=0.288 Sum_probs=89.2
Q ss_pred hcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCC--CCCCCHHHHHHHHhc----Ccc-
Q 016998 57 KKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKG--PPVLSMEERLALVSG----LKW- 128 (379)
Q Consensus 57 ~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~--~pi~t~eER~~~l~~----~~~- 128 (379)
.+.++.++..++...|+||-+|.||.-+|..|..++ ++++|||..|+.+.+ |. ..+-+.++|++.+.. ++.
T Consensus 134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~k-K~~~Eliepie~R~~~V~~Fl~~IKp~ 212 (293)
T KOG3351|consen 134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKK-KVLKELIEPIEERKEHVSNFLKSIKPD 212 (293)
T ss_pred ccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHH-hHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 334455667789999999999999999999999998 889999998886543 33 568899999998764 322
Q ss_pred --ccEEEeCCCccccHHHHHHHhhccCccEEEEcCCCCCCCCCchHHHHHHhCCe--EEEeccC---CCCCHHHHHHHHH
Q 016998 129 --VDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGR--YKQIKRT---EGVSSTDIVGRIL 201 (379)
Q Consensus 129 --VD~Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~--~~~v~r~---~~VSST~Ir~rI~ 201 (379)
++.+=.-.||..+-. .-..+.+|+...-..|...-.....-+...+ ++.+.-. +.+|+|++++...
T Consensus 213 l~~~~vpi~Dp~GPt~~-------d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~~~kls~t~~~~~kv 285 (293)
T KOG3351|consen 213 LNVRVVPIHDPFGPTIT-------DPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYDAQKLSSTENRELKV 285 (293)
T ss_pred ceEEEEecccCCCCCcc-------CCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccChhhcchhHHHHhhh
Confidence 232323455544321 1246788888776665433322211111222 3344332 4589999887544
No 106
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.37 E-value=2.6e-06 Score=76.99 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=51.2
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998 64 KRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125 (379)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~ 125 (379)
++++.+..|-|-++|.||+++|+.|.+..|+|+|++.|+..-... +--+|..||..|++.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~--~nPfTagER~~mi~~ 61 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTL--KNPFTAGERIPMIRD 61 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCcccccc--cCCCCccchhHHHHH
Confidence 467899999999999999999999999999999999998753222 345778999999884
No 107
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.32 E-value=1.6e-06 Score=81.77 Aligned_cols=84 Identities=32% Similarity=0.455 Sum_probs=64.1
Q ss_pred CCCCCCCeEEEEcCccccCChHHHHHHHHHHhcC-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc----c---C
Q 016998 250 KGPGPNARVVYIDGAFDLFHAGHVEILKKARQLG-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC----R---Y 321 (379)
Q Consensus 250 ~~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~----~---~ 321 (379)
.++..+..++.++|+||-+|.||-=+|..|..++ |.|||||+.|+.+.+.+-+ --+-+.+||++.|..+ | .
T Consensus 136 ~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~-Eliepie~R~~~V~~Fl~~IKp~l~ 214 (293)
T KOG3351|consen 136 SGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLK-ELIEPIEERKEHVSNFLKSIKPDLN 214 (293)
T ss_pred ccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHH-HHhhhHHHHHHHHHHHHHhcCCCce
Confidence 4455556789999999999999999999999987 8999999999988764422 3588999999776543 2 2
Q ss_pred cCceEeCCCCCch
Q 016998 322 VDEVIIGAPWEVT 334 (379)
Q Consensus 322 Vd~Vii~~~~~~~ 334 (379)
|+.|=+-+|++++
T Consensus 215 ~~~vpi~Dp~GPt 227 (293)
T KOG3351|consen 215 VRVVPIHDPFGPT 227 (293)
T ss_pred EEEEecccCCCCC
Confidence 4444455666654
No 108
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.31 E-value=1.6e-06 Score=88.47 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCCCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcch-----hccCCCCCCCCCHHHHHHHHHHc-cCcCc
Q 016998 251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIV-----SEHRGSYHPIMHLHERSLSVLAC-RYVDE 324 (379)
Q Consensus 251 ~~~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v-----~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~ 324 (379)
.+....+++++.|+||++|.||+.++++|.+++|.|+|+|.++..- +..| ....++.++|..+++.. +..+.
T Consensus 47 ~~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l~v~v~~~~~~~~~~~~~~~--~~~~~s~~~R~~~l~~~~~~~~~ 124 (399)
T PRK08099 47 FPRQMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIICYDDERDRKLFEDSA--MSQQPTVSDRLRWLLQTFKYQKN 124 (399)
T ss_pred hhhhcCcEEEEEEecCCCCHHHHHHHHHHHHHCCeeEEEEEccCCcchhhccccc--ccCCCCHHHHHHHHHHHhCCCCC
Confidence 3334467899999999999999999999999999999999887521 1111 14688999999888655 77776
Q ss_pred eEeCC----C---C--C------chHHHHHH--cCCcEEEEcCCCCCCCCC-CCCceEEEEe
Q 016998 325 VIIGA----P---W--E------VTKDMITT--FNICLVVHGTVSETNTPL-TVSLQFLYLP 368 (379)
Q Consensus 325 Vii~~----~---~--~------~~~~~i~~--~~~d~vv~G~d~~~~~~l-~~~~evv~lp 368 (379)
|.+.. + + + .....+.. .++|+++-|.+.+.+..+ -.+.+++.++
T Consensus 125 v~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d~~~~~~~~~~~~~~vd 186 (399)
T PRK08099 125 IKIHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQDAPQYEEHLGIETVLVD 186 (399)
T ss_pred EEEEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCChHHHHHhcCCceeeec
Confidence 66641 1 1 1 11222333 268999999776533222 2355555444
No 109
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.30 E-value=4.9e-06 Score=75.54 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=48.4
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCc--CceEe
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYV--DEVII 327 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~V--d~Vii 327 (379)
+++++.+|+|||+|.||+.+.+++ ...|.+++..+... ..| ++..+.++|+.+++.. +.. +.+.+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~d~v~~vP~~~~---~~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v 69 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAH---AWG---KTMLDYETRCQLVDAFIQDLGLSNVQR 69 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcCCEEEEEECCCC---ccc---CCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 368999999999999999999996 46799888765421 222 3677999999988544 543 35655
No 110
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=98.26 E-value=3.7e-06 Score=77.36 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=69.4
Q ss_pred EcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCC------CC
Q 016998 261 IDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGA------PW 331 (379)
Q Consensus 261 ~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~------~~ 331 (379)
.+|+|||+|.||+.++++|.+.. |.+++....+. ..|.. ....+.++|+.+++ +++..+.+.+.. ..
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~---p~k~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANP---PHKKT-YEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 57999999999999999999875 67777666553 23332 34579999999985 667777666642 12
Q ss_pred CchHHHHHHc---CCc---EEEEcCCCCCC-------CCCCCCceEEEEeeec
Q 016998 332 EVTKDMITTF---NIC---LVVHGTVSETN-------TPLTVSLQFLYLPLIN 371 (379)
Q Consensus 332 ~~~~~~i~~~---~~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~~ 371 (379)
..|.+.++.+ -++ +++.|.|.-.. +.+-..+.++.+++..
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g 130 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPG 130 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCC
Confidence 3355555444 344 57889763322 2233346666666543
No 111
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.19 E-value=2.7e-06 Score=76.91 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=51.0
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC 319 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~ 319 (379)
++..++-|.|-|||.||+.++++|.+..|.|||+|.||+.....| +|+ |-.||..+++.+
T Consensus 3 ~~rgv~~GRFqP~H~GHl~vi~~al~~vDeliI~iGSa~~~~t~~---nPf-TagER~~mi~~~ 62 (172)
T COG1056 3 MKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLK---NPF-TAGERIPMIRDR 62 (172)
T ss_pred ceEEEEEeccCCccHhHHHHHHHHHHhCCEEEEEEccCccccccc---CCC-CccchhHHHHHH
Confidence 567889999999999999999999999999999999998654444 455 888999888744
No 112
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=98.13 E-value=7.7e-06 Score=81.75 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=72.4
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCC---
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP--- 330 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~--- 330 (379)
++++.+|+|||+|.||+.+.+.|.+. .|.+++..+.+. ..|.. .+..+.++|+.++ ++++..+.+.+.+.
T Consensus 2 ~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~-~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 2 KIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKK-QKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred eEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCC-CCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 68899999999999999999999875 488887776543 33432 3455568999888 45566666665321
Q ss_pred ---CCchHHH---HHHcCCc---EEEEcCCCCCC-------CCCCCCceEEEEeee
Q 016998 331 ---WEVTKDM---ITTFNIC---LVVHGTVSETN-------TPLTVSLQFLYLPLI 370 (379)
Q Consensus 331 ---~~~~~~~---i~~~~~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~ 370 (379)
...|.+. +++.-|+ +++.|.|.-.. +.+-..++++.+|+.
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~ 133 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRK 133 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECC
Confidence 1233344 4443454 78889763332 334446777777764
No 113
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.12 E-value=1.9e-05 Score=72.27 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=70.4
Q ss_pred ccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-cCcCceEeCCCCC----------
Q 016998 264 AFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-RYVDEVIIGAPWE---------- 332 (379)
Q Consensus 264 ~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~~Vd~Vii~~~~~---------- 332 (379)
.|||+|.||++++++|.+.+|.++|++-+. + .+.++.++|.++++.. +..+.|.+....+
T Consensus 7 ~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~------~---~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~~ 77 (182)
T smart00764 7 NANPFTLGHRYLVEQAAAECDWVHLFVVSE------D---ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPS 77 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceEEEEEeC------C---CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccChh
Confidence 699999999999999999999999888754 2 3567999999888544 6544433321100
Q ss_pred ----------------chHHHH----HHcCCcEEEEcCCCCCC-----------CCCCCCceEEEEeeecc
Q 016998 333 ----------------VTKDMI----TTFNICLVVHGTVSETN-----------TPLTVSLQFLYLPLINY 372 (379)
Q Consensus 333 ----------------~~~~~i----~~~~~d~vv~G~d~~~~-----------~~l~~~~evv~lp~~~~ 372 (379)
...+|+ +++++..++.|.|+-.. ...+.++++.-+|....
T Consensus 78 ~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~ 148 (182)
T smart00764 78 YFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKA 148 (182)
T ss_pred hhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccC
Confidence 123444 46899999999987654 12344788888877543
No 114
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=98.12 E-value=1e-05 Score=72.29 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcC---CEEE--EEEecCc--chhccCCCCCCCCCHHHHHHHHHHccCcCceEe
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLG---DFLL--VGIYTDQ--IVSEHRGSYHPIMHLHERSLSVLACRYVDEVII 327 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~g---d~li--Vgv~~D~--~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii 327 (379)
.++.+++-|.||-+|.||..+|++|.+.+ +... +....+. ..+..+ ....+++.+||...++++ .||.+++
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~-~~~~l~s~~ek~~~l~~~-Gvd~~~~ 81 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDK-PPKLLTSLEEKLELLESL-GVDYVIV 81 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTC-CGGBSS-HHHHHHHHHHT-TESEEEE
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCC-cccCCCCHHHHHHHHHHc-CCCEEEE
Confidence 45789999999999999999999988775 3333 3333332 122112 225699999999999997 4898877
Q ss_pred CCC-----CCchHHHHHH-----cCCcEEEEcCCCCCCC------------CCCCCceEEEEeee
Q 016998 328 GAP-----WEVTKDMITT-----FNICLVVHGTVSETNT------------PLTVSLQFLYLPLI 370 (379)
Q Consensus 328 ~~~-----~~~~~~~i~~-----~~~d~vv~G~d~~~~~------------~l~~~~evv~lp~~ 370 (379)
.+. .-...+|++. +++..+|.|.|+-... .-+.+.++..+|-.
T Consensus 82 ~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 82 IPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPV 146 (157)
T ss_dssp E-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---
T ss_pred ecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCE
Confidence 432 2345677775 6899999999976441 22345777777654
No 115
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.10 E-value=7.4e-06 Score=80.52 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHH-ccCcCceEeCCCCC-
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLA-CRYVDEVIIGAPWE- 332 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~-~~~Vd~Vii~~~~~- 332 (379)
.++++-+-|+|||+|.||+.++++|.+.+|.++|.+-+. + .+.++.++|..+++. ++..+.+.+....+
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~------~---~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l 183 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLFVVSE------D---KSLFSFADRFKLVKKGTKHLKNVTVHSGGDY 183 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhCCeEEEEEEcC------C---CCCCCHHHHHHHHHHHhCCCCCEEEEecCCe
Confidence 357889999999999999999999999999998888643 2 478899999988854 46555444422211
Q ss_pred -------------------------chHHHH----HHcCCcEEEEcCCCCCCC----------C-CCCCceEEEEeee
Q 016998 333 -------------------------VTKDMI----TTFNICLVVHGTVSETNT----------P-LTVSLQFLYLPLI 370 (379)
Q Consensus 333 -------------------------~~~~~i----~~~~~d~vv~G~d~~~~~----------~-l~~~~evv~lp~~ 370 (379)
...+|+ +++++..+|.|.|+-... . .+.+.+++.+|..
T Consensus 184 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~ 261 (297)
T cd02169 184 IISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERK 261 (297)
T ss_pred eeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEeccc
Confidence 123444 457999999999876541 1 2236777776643
No 116
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.03 E-value=1.8e-05 Score=73.41 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC---
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG--- 328 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~--- 328 (379)
.+++++.+|+|||.|.||+.+.++|.+.. |.|+.-.+.. +..|.. .+.-+.++|..++ ++++..+...+.
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~---~p~k~~-~~~a~~~~R~~Ml~la~~~~~~~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV---PPHKKK-KELASAEHRLAMLELAIEDNPRFEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC---CCCCCC-ccCCCHHHHHHHHHHHHhcCCCcceeHHH
Confidence 46899999999999999999999998765 5544444433 233432 4789999999887 677766653321
Q ss_pred ---CCCCchHH---HHH-HcCCcE---EEEcCCCCCC-------CCCCCCceEEEEeeecc
Q 016998 329 ---APWEVTKD---MIT-TFNICL---VVHGTVSETN-------TPLTVSLQFLYLPLINY 372 (379)
Q Consensus 329 ---~~~~~~~~---~i~-~~~~d~---vv~G~d~~~~-------~~l~~~~evv~lp~~~~ 372 (379)
.....|.| .++ +.++|. ++-|.|.-.. +.+-.-++++-+++.-.
T Consensus 78 ~~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~ 138 (197)
T COG1057 78 IKRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGY 138 (197)
T ss_pred HHcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCc
Confidence 11233333 333 667884 8899874433 33445667777666554
No 117
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=98.01 E-value=2.9e-05 Score=74.27 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=69.1
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcC----ceEeC
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVD----EVIIG 328 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd----~Vii~ 328 (379)
+++.+.+|+||+.|.||+.+.++|.+.. |.+++--+.+. ..| .+..+.++|+.|++ +++..| .+.+.
T Consensus 22 ~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~p---p~K---~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~ 95 (243)
T PRK06973 22 RRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQP---WQK---ADVSAAEHRLAMTRAAAASLVLPGVTVRVA 95 (243)
T ss_pred ceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcC---CCC---CCCCCHHHHHHHHHHHHHhccCCCceEEEe
Confidence 5789999999999999999999998764 77777766553 223 36779999998884 445321 23222
Q ss_pred ------CCCCchHHHHHHc---C-Cc---EEEEcCCCCCC-------CCCCCCceEEEEeee
Q 016998 329 ------APWEVTKDMITTF---N-IC---LVVHGTVSETN-------TPLTVSLQFLYLPLI 370 (379)
Q Consensus 329 ------~~~~~~~~~i~~~---~-~d---~vv~G~d~~~~-------~~l~~~~evv~lp~~ 370 (379)
.....|.+.++.+ - ++ +++.|.|.-.. +.+-..+.++.+++.
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~~R~ 157 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAATRP 157 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEEECC
Confidence 1123445555443 2 55 68889763322 223334566666553
No 118
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.99 E-value=8.1e-05 Score=67.46 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=84.2
Q ss_pred ecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-C---------ccccEEEeCCCcc-
Q 016998 71 DGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-L---------KWVDEVIANAPYA- 139 (379)
Q Consensus 71 ~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~---------~~VD~Vv~~~p~~- 139 (379)
..+-.++++||+.|+++|.+.+|.|.|-|.+.+ .-+++.++|++|++. + .+-|++|..+.|.
T Consensus 5 VMNaNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPs 77 (182)
T PF08218_consen 5 VMNANPFTLGHRYLIEQAAKECDWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPS 77 (182)
T ss_pred EEcCCCCccHHHHHHHHHHHhCCEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChh
Confidence 345679999999999999999998877666643 467999999999984 1 1224444433331
Q ss_pred -cc-H--------------HHHHHHhhccCccEEEEcCCCCCCCCCchHHH-----HHHhC-CeEEEeccC----CCCCH
Q 016998 140 -IT-E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYA-----LAKKV-GRYKQIKRT----EGVSS 193 (379)
Q Consensus 140 -~t-~--------------efl~~ll~~~~~d~VV~GdD~~~g~~g~~~y~-----~lk~~-g~~~~v~r~----~~VSS 193 (379)
|. + -|.+.+...+++..-.+|+.+..-.. ..|. .|... -++.+++|. +.||.
T Consensus 78 YFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT--~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISA 155 (182)
T PF08218_consen 78 YFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT--RIYNEAMKEILPPYGIEVVEIPRKEINGEPISA 155 (182)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH--HHHHHHHHHhccccCCEEEEEecccCCCcEEcH
Confidence 00 0 23333445689999999998855332 2333 23334 367889984 35999
Q ss_pred HHHHHHHHhc
Q 016998 194 TDIVGRILSS 203 (379)
Q Consensus 194 T~Ir~rI~~~ 203 (379)
|..|+.|.++
T Consensus 156 S~VR~~l~~~ 165 (182)
T PF08218_consen 156 SRVRKLLKEG 165 (182)
T ss_pred HHHHHHHHcC
Confidence 9999999865
No 119
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=97.93 E-value=2e-05 Score=76.79 Aligned_cols=64 Identities=30% Similarity=0.301 Sum_probs=53.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA 134 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~ 134 (379)
-|.|+|+ +|.||+.||++|++.++.++|.+..+|.-... .. +.+++.++|.++++.+ +||.++.
T Consensus 26 ~VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~ 92 (282)
T TIGR00018 26 FVPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA 92 (282)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence 4679999 99999999999999999899999888764222 22 4588999999999997 8999886
No 120
>PLN02660 pantoate--beta-alanine ligase
Probab=97.85 E-value=3.6e-05 Score=75.02 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=54.3
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhcc-CC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIAN-KG--PPVLSMEERLALVSGLKWVDEVIA 134 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~-K~--~pi~t~eER~~~l~~~~~VD~Vv~ 134 (379)
--|.|+|. +|.||+.||++|++.++.++|.+..+|.-... .. +.+++.++|.++++.+ +||.++.
T Consensus 24 gfVpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~ 91 (284)
T PLN02660 24 ALVPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFN 91 (284)
T ss_pred EEEEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence 34788999 99999999999999999889988888764221 22 4688999999999997 8999886
No 121
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.80 E-value=6.1e-05 Score=73.75 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=64.2
Q ss_pred EEEcCccccCChHHHHHHHHHHhcC-----CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC--
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLG-----DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW-- 331 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~g-----d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~-- 331 (379)
|++-|.||-+|.||..+|++|++.+ .-.++........--......++++.+||...++++ .||.+++-+..
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEEeCCCHH
Confidence 3567999999999999999887653 344555544322111111112399999999999998 49988885431
Q ss_pred ---CchHHHHH-----HcCCcEEEEcCCCCC
Q 016998 332 ---EVTKDMIT-----TFNICLVVHGTVSET 354 (379)
Q Consensus 332 ---~~~~~~i~-----~~~~d~vv~G~d~~~ 354 (379)
-...+|++ ++++..+|.|.|+--
T Consensus 80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~F 110 (288)
T TIGR00083 80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRF 110 (288)
T ss_pred HHcCCHHHHHHHHHHhccCCcEEEECCCccC
Confidence 12344553 368999999999763
No 122
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=97.72 E-value=0.00011 Score=69.41 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=52.4
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcC--CE--EEEEEe-cCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCC-
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLG--DF--LLVGIY-TDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP- 330 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~g--d~--liVgv~-~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~- 330 (379)
+.+.+|+|||.|.||+.+++.|.+.. |. .+|.+. .=...+..| .+..+.++|+.+++ ++...+.+.+.+.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E 78 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK---KGLASAKHRVAMCRLAVQSSDWIRVDDWE 78 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC---CCCCCHHHHHHHHHHHHccCCCEEEEehh
Confidence 57889999999999999999998765 22 232221 100011123 46779999998885 7777776666432
Q ss_pred -----CCchHHHHHHcC
Q 016998 331 -----WEVTKDMITTFN 342 (379)
Q Consensus 331 -----~~~~~~~i~~~~ 342 (379)
...|.+.++.++
T Consensus 79 ~~~~~~syT~~TL~~l~ 95 (225)
T cd09286 79 SLQPEWMRTAKVLRHHR 95 (225)
T ss_pred ccCCccccHHHHHHHHH
Confidence 223556666553
No 123
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=97.60 E-value=0.00039 Score=66.13 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCccccCChHHHHHHHHHHhcC--C-EEEEEEecCcc-hhccCCCCCCCCCHHHHHHHHH-HccCcCceEe
Q 016998 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLG--D-FLLVGIYTDQI-VSEHRGSYHPIMHLHERSLSVL-ACRYVDEVII 327 (379)
Q Consensus 253 ~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~g--d-~liVgv~~D~~-v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii 327 (379)
.....+.+.+|+|||.|.||+.+.+.|++.- | ..+|++.--.. ....| ....+.++|+.|++ ++..-+.+.+
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k---~~~~~~~~Rl~Ml~lai~~~~~~~V 95 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK---KGLASAEHRIQMCQLACEDSDFIMV 95 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCCCCeEe
Confidence 3446778889999999999999999887643 3 33444321111 11122 25679999999984 6665444443
Q ss_pred C-----CC-CCchHHHHHHc----C-------Cc---EEEEcCC
Q 016998 328 G-----AP-WEVTKDMITTF----N-------IC---LVVHGTV 351 (379)
Q Consensus 328 ~-----~~-~~~~~~~i~~~----~-------~d---~vv~G~d 351 (379)
. -+ ...|.+.++.+ . ++ +++.|.|
T Consensus 96 ~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D 139 (236)
T PLN02945 96 DPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSD 139 (236)
T ss_pred cHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechh
Confidence 2 11 23455665333 1 33 5888976
No 124
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.59 E-value=0.0012 Score=64.11 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=91.3
Q ss_pred CCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhc-C---------ccccE
Q 016998 62 KKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-L---------KWVDE 131 (379)
Q Consensus 62 ~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~-~---------~~VD~ 131 (379)
....++.-+..+-.++.+||+.|++||.+.||.|.+=+.+++ ...++.++|.++++. . .+-|+
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdY 214 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGSDY 214 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCCCe
Confidence 344568888899999999999999999999998766555543 357899999999973 1 24566
Q ss_pred EEeCCCcc--cc-H--------------HHHHHHhhccCccEEEEcCCCCCCCCCc---hHHHHHHhCC------eEEEe
Q 016998 132 VIANAPYA--IT-E--------------QFMNRLFNEHKIDYIIHGDDPCLLPDGT---DAYALAKKVG------RYKQI 185 (379)
Q Consensus 132 Vv~~~p~~--~t-~--------------efl~~ll~~~~~d~VV~GdD~~~g~~g~---~~y~~lk~~g------~~~~v 185 (379)
+|..+.|. |- + -|-+.+...+++..-.+|..+..-.... ..-.+|...+ +++++
T Consensus 215 iISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vvei 294 (352)
T COG3053 215 IISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVVEI 294 (352)
T ss_pred EEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEEEe
Confidence 66655442 11 0 1222244568899999998874422211 1122444433 46788
Q ss_pred ccC----CCCCHHHHHHHHHhc
Q 016998 186 KRT----EGVSSTDIVGRILSS 203 (379)
Q Consensus 186 ~r~----~~VSST~Ir~rI~~~ 203 (379)
+|. ..||.|..|+.+.+.
T Consensus 295 ~Rk~~~~~~ISAS~VR~~l~~~ 316 (352)
T COG3053 295 ERKKYQEMPISASRVRQLLAKN 316 (352)
T ss_pred ehhhhcCCcccHHHHHHHHHhC
Confidence 883 479999999999743
No 125
>PRK13670 hypothetical protein; Provisional
Probab=97.59 E-value=0.00025 Score=72.25 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=62.8
Q ss_pred cCccccCChHHHHHHHHHHhcCC-EEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC---CchHH-
Q 016998 262 DGAFDLFHAGHVEILKKARQLGD-FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW---EVTKD- 336 (379)
Q Consensus 262 ~G~FDl~H~GHi~~L~~A~~~gd-~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~---~~~~~- 336 (379)
-=-||+||.||..+|++|++... .++++|-+-..+.+ |. .++++..+|+.+++.+ .||.|+.-+.. ....+
T Consensus 7 IaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr--g~-p~i~~~~~R~~~a~~~-GvD~vielpf~~a~~sae~F 82 (388)
T PRK13670 7 IVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR--GE-PAIVDKWTRAKMALEN-GVDLVVELPFLYSVQSADFF 82 (388)
T ss_pred EeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC--CC-CCCCCHHHHHHHHHHc-CCCEEEEeCCchHhCCHHHH
Confidence 34599999999999999997542 34455556656544 44 3599999999999887 59988875431 12233
Q ss_pred ------HHHHcCCcEEEEcCCC
Q 016998 337 ------MITTFNICLVVHGTVS 352 (379)
Q Consensus 337 ------~i~~~~~d~vv~G~d~ 352 (379)
++..++++.+|.|.|.
T Consensus 83 ~~~aV~iL~~l~v~~lv~G~e~ 104 (388)
T PRK13670 83 AEGAVSILDALGVDSLVFGSES 104 (388)
T ss_pred HHhHHHHHHHcCCCEEEEcCCC
Confidence 4455899999999883
No 126
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.41 E-value=0.00021 Score=72.76 Aligned_cols=93 Identities=26% Similarity=0.422 Sum_probs=38.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCcccc-
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAIT- 141 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t- 141 (379)
+.+-++-=|.++|.||...|++||+.. | .+|.|-|-..+ ..| |-+++--.|.++.-.+ ++|.|++ -|+.++
T Consensus 2 k~~GIIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFv--QRGEPAi~dKw~RA~~AL~~-GaDLViE-LP~~~a~ 76 (388)
T PF05636_consen 2 KVVGIIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFV--QRGEPAIIDKWTRAEMALKN-GADLVIE-LPVVYAL 76 (388)
T ss_dssp -----E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTS--BTSSB-SS-HHHHHHHHHHH-T-SEEEE----G---
T ss_pred CCCCeEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCcc--cCCCeeeCCHHHHHHHHHHc-CCCEEEE-CCCcccc
Confidence 344455569999999999999999863 5 45556665544 345 7799999999998776 8999997 565544
Q ss_pred ---HHHHH---HHhhccCccEEEEcCCC
Q 016998 142 ---EQFMN---RLFNEHKIDYIIHGDDP 163 (379)
Q Consensus 142 ---~efl~---~ll~~~~~d~VV~GdD~ 163 (379)
+.|.. .++.++++|+++.|...
T Consensus 77 qsA~~FA~gaV~lL~~lgvd~l~FGsE~ 104 (388)
T PF05636_consen 77 QSAEYFARGAVSLLNALGVDYLSFGSES 104 (388)
T ss_dssp ----------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 24433 37788899999999753
No 127
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.36 E-value=0.0011 Score=65.35 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=75.9
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCC--EE-EEEEecCcchhccCCC---CCCCCCHHHHHHHHHHccCcCceEeCC
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGD--FL-LVGIYTDQIVSEHRGS---YHPIMHLHERSLSVLACRYVDEVIIGA 329 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd--~l-iVgv~~D~~v~~~Kg~---~~pi~~~~eR~~~v~~~~~Vd~Vii~~ 329 (379)
...|++-|.||-+|.||-.+|++|++.+. .+ .+.++-++--.+...+ ..-+++++||...+..+. ||.+++..
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~ 93 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD 93 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence 45688999999999999999998885542 11 3333333222222111 122899999999999996 88877743
Q ss_pred CC-----CchHHHHH----HcCCcEEEEcCCCCCCC------------CCCCCceEEEEeeec
Q 016998 330 PW-----EVTKDMIT----TFNICLVVHGTVSETNT------------PLTVSLQFLYLPLIN 371 (379)
Q Consensus 330 ~~-----~~~~~~i~----~~~~d~vv~G~d~~~~~------------~l~~~~evv~lp~~~ 371 (379)
.. -...+|++ .+++..+|-|.|+-..+ ..+ +.+|+.+|-..
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~~L~~~~~~-gf~v~~v~~~~ 155 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKIN 155 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCCHHHHHHhccC-CceEEEeccEe
Confidence 21 23445555 88999999998876431 122 67888887654
No 128
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.33 E-value=0.00063 Score=68.30 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=63.1
Q ss_pred EecccCcCCHHHHHHHHHHHHc-CCeEEEEEccchhhhccCC-CCCCCHHHHHHHHhcCccccEEEeCCCccccH---HH
Q 016998 70 MDGCFDLMHYGHANALRQAKAL-GDELVVGVVSDEEIIANKG-PPVLSMEERLALVSGLKWVDEVIANAPYAITE---QF 144 (379)
Q Consensus 70 ~~G~FD~lH~GH~~lL~qA~~~-~d~LiVgV~sd~~i~~~K~-~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~---ef 144 (379)
.+--||++|.||+.+|++|+++ .+..++.+-+-... ..+ +.+.+..+|.++..+. ++|.|++ .|+.++- ++
T Consensus 6 ii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~--qRgepai~~k~~r~~~aL~~-g~D~VIe-lP~~~s~q~a~~ 81 (358)
T COG1323 6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFT--QRGEPAIGHKWERKKMALEG-GADLVIE-LPLERSGQGAPY 81 (358)
T ss_pred eeeecCcccccHHHHHHHHHHhccCCceEEeeecchh--hcCCCccccHHHHHhhhhhc-CceEEEE-cceEEecCCCch
Confidence 3445999999999999999984 33344444444433 233 7899999999999885 8999998 5665442 22
Q ss_pred H-H---HHhhccCccEEEEcCC
Q 016998 145 M-N---RLFNEHKIDYIIHGDD 162 (379)
Q Consensus 145 l-~---~ll~~~~~d~VV~GdD 162 (379)
. . .++..+++|.|+.|..
T Consensus 82 fa~~av~il~~l~~~~i~fgse 103 (358)
T COG1323 82 FATRAVRILNALGGDDIAFGSP 103 (358)
T ss_pred hhHHHHHHHHhcCCCeEEEeCC
Confidence 2 1 2556788888888754
No 129
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=96.96 E-value=0.0073 Score=61.53 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=62.6
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHc--CCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc-c---cEE-EeCCCc
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW-V---DEV-IANAPY 138 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~--~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~-V---D~V-v~~~p~ 138 (379)
++|+..=+||++|.||..++++|.+. +|.|++-+.-- ..| +-.++.+-|+++++.+.- . +.+ +.-.|+
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~ 258 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL 258 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence 46888999999999999999999997 67666654432 223 367889999999986411 1 111 222233
Q ss_pred ccc----HHHHHH--HhhccCccEEEEcCCC
Q 016998 139 AIT----EQFMNR--LFNEHKIDYIIHGDDP 163 (379)
Q Consensus 139 ~~t----~efl~~--ll~~~~~d~VV~GdD~ 163 (379)
++. .+.+.. +-+.|++.++++|.|.
T Consensus 259 em~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred HhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 222 144433 3356899999999986
No 130
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.65 E-value=0.0052 Score=61.79 Aligned_cols=84 Identities=25% Similarity=0.277 Sum_probs=63.5
Q ss_pred ccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC----------C
Q 016998 264 AFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP----------W 331 (379)
Q Consensus 264 ~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~----------~ 331 (379)
.||+||.||..+|++|+++ +|..++++..| .+. .|. .++.+-.||..+.+++ -+|.||..+- .
T Consensus 9 eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~q--Rge-pai~~k~~r~~~aL~~-g~D~VIelP~~~s~q~a~~fa 83 (358)
T COG1323 9 EYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQ--RGE-PAIGHKWERKKMALEG-GADLVIELPLERSGQGAPYFA 83 (358)
T ss_pred ecCcccccHHHHHHHHHHhccCCceEEeeecc-hhh--cCC-CccccHHHHHhhhhhc-CceEEEEcceEEecCCCchhh
Confidence 4999999999999999973 46667777666 544 344 5799999999999887 4788887432 1
Q ss_pred CchHHHHHHcCCcEEEEcCCC
Q 016998 332 EVTKDMITTFNICLVVHGTVS 352 (379)
Q Consensus 332 ~~~~~~i~~~~~d~vv~G~d~ 352 (379)
.-....+.++++|.++.|+..
T Consensus 84 ~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 84 TRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred HHHHHHHHhcCCCeEEEeCCC
Confidence 123567778899999999654
No 131
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=96.61 E-value=0.0063 Score=55.39 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=72.1
Q ss_pred cccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeCCC--CCch-------
Q 016998 265 FDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIGAP--WEVT------- 334 (379)
Q Consensus 265 FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~~~--~~~~------- 334 (379)
-.||+.||.-++++|.+.+|.|.|=|-+++ +..+++++|..+| +.++..++|.+-+. +-++
T Consensus 8 aNPFT~GH~yLiE~Aa~~~d~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsY 78 (182)
T PF08218_consen 8 ANPFTLGHRYLIEQAAKECDWLHVFVVSED---------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSY 78 (182)
T ss_pred CCCCccHHHHHHHHHHHhCCEEEEEEEccc---------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhh
Confidence 468999999999999999999988887653 4799999999877 66788888877322 1100
Q ss_pred -----H----------------HHHHHcCCcEEEEcCCCCCC----------CCCC-CCceEEEEeeecc
Q 016998 335 -----K----------------DMITTFNICLVVHGTVSETN----------TPLT-VSLQFLYLPLINY 372 (379)
Q Consensus 335 -----~----------------~~i~~~~~d~vv~G~d~~~~----------~~l~-~~~evv~lp~~~~ 372 (379)
. -+...++|..-..|++.-.. +.|+ .|++++.+|+...
T Consensus 79 FlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~ 148 (182)
T PF08218_consen 79 FLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKEI 148 (182)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEecccC
Confidence 0 13344577777778765443 2344 5799999999854
No 132
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.37 E-value=0.0064 Score=62.08 Aligned_cols=85 Identities=21% Similarity=0.404 Sum_probs=37.9
Q ss_pred ccccCChHHHHHHHHHHhc-C-CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCC-C---------
Q 016998 264 AFDLFHAGHVEILKKARQL-G-DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAP-W--------- 331 (379)
Q Consensus 264 ~FDl~H~GHi~~L~~A~~~-g-d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~-~--------- 331 (379)
-|.|||.||.-+|++||+. + |. ||+|-|-.++. +|. ..+++--+|+.+.+.+ .||-|+--+. +
T Consensus 9 EYNPFHnGH~y~i~~~k~~~~ad~-ii~vMSGnFvQ--RGE-PAi~dKw~RA~~AL~~-GaDLViELP~~~a~qsA~~FA 83 (388)
T PF05636_consen 9 EYNPFHNGHLYQIEQAKKITGADV-IIAVMSGNFVQ--RGE-PAIIDKWTRAEMALKN-GADLVIELPVVYALQSAEYFA 83 (388)
T ss_dssp --TT--HHHHHHHHHHH---TSSE-EEEEE--TTSB--TSS-B-SS-HHHHHHHHHHH-T-SEEEE---G----------
T ss_pred eECCccHHHHHHHHHHhccCCCCE-EEEEECCCccc--CCC-eeeCCHHHHHHHHHHc-CCCEEEECCCccccccccccc
Confidence 4899999999999999975 3 65 44555555765 465 5799999999988887 4887776321 1
Q ss_pred CchHHHHHHcCCcEEEEcCCCC
Q 016998 332 EVTKDMITTFNICLVVHGTVSE 353 (379)
Q Consensus 332 ~~~~~~i~~~~~d~vv~G~d~~ 353 (379)
.-...++.+.++|.++-|++..
T Consensus 84 ~gaV~lL~~lgvd~l~FGsE~~ 105 (388)
T PF05636_consen 84 RGAVSLLNALGVDYLSFGSESG 105 (388)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 1124677888999999997653
No 133
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=95.70 E-value=0.029 Score=54.89 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=48.4
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG 328 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~ 328 (379)
|.+-|. +|.||..++++|++.+|.++|.+..+..--.. .....-++++++|...++++ .||.++..
T Consensus 27 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 93 (282)
T TIGR00018 27 VPTMGN---LHDGHMSLIDRAVAENDVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAP 93 (282)
T ss_pred EECCCc---ccHHHHHHHHHHHHhCCeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 445576 99999999999999999999999877432111 11113467999999988887 57766653
No 134
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=95.54 E-value=0.046 Score=53.48 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG 328 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~ 328 (379)
+++++++. +..-+|.||..++++|++.++.++|.+..+..--.. .....-+.++++|...++++ .||.+++.
T Consensus 21 ~~~i~~v~-tmG~lH~GH~~Li~~a~~~a~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p 93 (281)
T PRK00380 21 GKRIGLVP-TMGALHEGHLSLVREARAEADIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP 93 (281)
T ss_pred CCeEEEEE-ccCceeHHHHHHHHHHHHhCCEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence 45565554 444499999999999999999999999877432111 11113467899999988887 58877764
No 135
>PLN02660 pantoate--beta-alanine ligase
Probab=95.43 E-value=0.05 Score=53.30 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=48.7
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIG 328 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~ 328 (379)
|.+-|. +|.||..++++|++.+|.++|.+..+..--.. ....+..+++++|...++++ .||.++..
T Consensus 26 VpTmG~---LH~GH~~LI~~a~~~a~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 92 (284)
T PLN02660 26 VPTMGY---LHEGHLSLVRAARARADVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNP 92 (284)
T ss_pred EEcCch---hhHHHHHHHHHHHHhCCEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 455566 99999999999999999999999877543111 11123467999999988887 57877653
No 136
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=94.75 E-value=0.11 Score=50.95 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHH-HHccCcCceEeC--C
Q 016998 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSV-LACRYVDEVIIG--A 329 (379)
Q Consensus 253 ~~~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v-~~~~~Vd~Vii~--~ 329 (379)
.++++|.-+--.-.||+.||--++++|.+.+|.|-+=|.+++ ...++.++|..++ +..++.++|.+- .
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgs 212 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKED---------SSLFPYEDRLDLVKKGTADLPNVTVHSGS 212 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEEEecc---------cccCCHHHHHHHHHHhhccCCceEEecCC
Confidence 356788888888999999999999999999999987777663 4688999999655 677888877652 1
Q ss_pred CCCch----------------------------HHHHHHcCCcEEEEcCCCCCC----------CC------CCCCceEE
Q 016998 330 PWEVT----------------------------KDMITTFNICLVVHGTVSETN----------TP------LTVSLQFL 365 (379)
Q Consensus 330 ~~~~~----------------------------~~~i~~~~~d~vv~G~d~~~~----------~~------l~~~~evv 365 (379)
++-++ .-+...++|.--..|++.... .+ -.+-++++
T Consensus 213 dYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vv 292 (352)
T COG3053 213 DYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVV 292 (352)
T ss_pred CeEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEE
Confidence 11110 113445577777778765433 12 22359999
Q ss_pred EEeeecc
Q 016998 366 YLPLINY 372 (379)
Q Consensus 366 ~lp~~~~ 372 (379)
.+|+...
T Consensus 293 ei~Rk~~ 299 (352)
T COG3053 293 EIERKKY 299 (352)
T ss_pred Eeehhhh
Confidence 9998654
No 137
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=94.52 E-value=0.11 Score=50.81 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=56.7
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhcc-CCCCCCCCCHHHHHHHHHHccCcCceEeCC-----CCC
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEH-RGSYHPIMHLHERSLSVLACRYVDEVIIGA-----PWE 332 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~-Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~-----~~~ 332 (379)
|.+-|. +|.||..++++|++.+|.++|.+..+..--.. .....-+.+++++...++++ .||.++... |.+
T Consensus 27 V~TmG~---LH~GH~~LI~~a~~~a~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p~~~~m~p~~ 102 (277)
T cd00560 27 VPTMGA---LHEGHLSLVRRARAENDVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAPSVEEMYPEG 102 (277)
T ss_pred EECCCc---ccHHHHHHHHHHHHhCCEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECCCHHHcCCCC
Confidence 445566 99999999999999999999999877543111 11113467899999988887 578774321 122
Q ss_pred chHHHHHHcCCcEEEEcC
Q 016998 333 VTKDMITTFNICLVVHGT 350 (379)
Q Consensus 333 ~~~~~i~~~~~d~vv~G~ 350 (379)
...-++...++..++.|.
T Consensus 103 f~~~~v~~~~~~~il~G~ 120 (277)
T cd00560 103 LFSTFVDVGPLSEVLEGA 120 (277)
T ss_pred CceEEEecCCCceEEecC
Confidence 111112234566667776
No 138
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=94.45 E-value=0.1 Score=51.02 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=39.7
Q ss_pred EEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCC---CCCCCHHHHHHHHhcCccccEEEe
Q 016998 68 VYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKG---PPVLSMEERLALVSGLKWVDEVIA 134 (379)
Q Consensus 68 V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~---~pi~t~eER~~~l~~~~~VD~Vv~ 134 (379)
+-+..+-=-+|-||+.|+++|++.+|.++|.+.-+|.=...+. ...-+.+.=.++++.. +||.++.
T Consensus 24 igfVPTMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 24 IGFVPTMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp EEEEEE-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred EEEECCCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence 4444555567999999999999999999998876664211111 2334567777888876 8998875
No 139
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=94.00 E-value=0.16 Score=53.83 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=50.3
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchh-hhccCC--CCCCCHHHHHHHHhcCccccEEEeC
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEE-IIANKG--PPVLSMEERLALVSGLKWVDEVIAN 135 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~-i~~~K~--~pi~t~eER~~~l~~~~~VD~Vv~~ 135 (379)
++-+.-+-=.+|-||+.|+++|++.+|.++|.+.-+|. ...... ...-++++=.++++.. +||.|+..
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence 57777778889999999999999999999988855543 111111 2234678888888886 89988753
No 140
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=93.94 E-value=0.2 Score=48.72 Aligned_cols=74 Identities=27% Similarity=0.262 Sum_probs=47.2
Q ss_pred cccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEEEe
Q 016998 58 KKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEVIA 134 (379)
Q Consensus 58 ~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~Vv~ 134 (379)
.|+++++ +|-..=+--.+|-||+.|+++|++.+|.++|.+.-+|.=. ++.. ..--++++=.++++.. +||.++.
T Consensus 16 ~~r~~gk--~Vg~VPTMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~-gvd~vF~ 92 (285)
T COG0414 16 ALRKEGK--RVGLVPTMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE-GVDIVFA 92 (285)
T ss_pred HHHHcCC--EEEEEcCCcccchHHHHHHHHHhhcCCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence 4555443 5666667778999999999999999998888877655411 1111 1123345555555553 6776664
No 141
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=93.71 E-value=1.9 Score=44.21 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=61.0
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc----ccEEEe-CCCcc
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEVIA-NAPYA 139 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~----VD~Vv~-~~p~~ 139 (379)
-++|+..=+-+++|.||..+++.|.+.+|-|++ ++ .+ ..+++-=++.+-|++..+.+.- -+.++. ..|..
T Consensus 186 w~~VvafqTrnP~HraHe~l~~~a~e~~d~lll--~p--lv-G~~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~ 260 (391)
T PRK04149 186 WKTVVAFQTRNPPHRAHEYLQKCALEIVDGLLL--NP--LV-GETKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPAA 260 (391)
T ss_pred CCeEEEeecCCCCchHHHHHHHHHHHhcCeEEE--ec--Cc-CCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 347888899999999999999999999984444 22 11 1122345778889888877411 112222 12221
Q ss_pred -----ccHHHHHHHh-hccCccEEEEcCCC
Q 016998 140 -----ITEQFMNRLF-NEHKIDYIIHGDDP 163 (379)
Q Consensus 140 -----~t~efl~~ll-~~~~~d~VV~GdD~ 163 (379)
..+..+..++ +.++|.++++|-|.
T Consensus 261 mryAGPrEa~lhAivrkN~GcTh~IvGrDH 290 (391)
T PRK04149 261 MRYAGPREAIFHAIVRKNYGCTHFIVGRDH 290 (391)
T ss_pred hcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 1134455555 45999999999986
No 142
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=92.99 E-value=1.4 Score=44.62 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=61.3
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC---cc-ccEEEeC-CCcc
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL---KW-VDEVIAN-APYA 139 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~---~~-VD~Vv~~-~p~~ 139 (379)
-++|++.=+++++|.||-.+.+.|.+.+|.|+|-.. + ..+++-=.+.+-|++..+.+ .+ =|.++.. .|+.
T Consensus 183 wk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~pl----V-G~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~a 257 (397)
T COG2046 183 WKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPL----V-GATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAA 257 (397)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEee----e-ccccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHH
Confidence 458999999999999999999999999996544322 1 11222334566676665542 12 3445442 2222
Q ss_pred cc-----HHHHHHHh-hccCccEEEEcCCCC
Q 016998 140 IT-----EQFMNRLF-NEHKIDYIIHGDDPC 164 (379)
Q Consensus 140 ~t-----~efl~~ll-~~~~~d~VV~GdD~~ 164 (379)
.. +.-+..++ +.++|.+.++|-|..
T Consensus 258 MRyagPrEa~~HaIIRkNyGcTHfIVGRDHA 288 (397)
T COG2046 258 MRYAGPREALLHAIIRKNYGCTHFIVGRDHA 288 (397)
T ss_pred hhhcCcHHHHHHHHHHhhcCCeeeeecCCCC
Confidence 11 34445555 459999999999974
No 143
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=92.73 E-value=1.8 Score=43.76 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred eEEEEecccCcCCHHHHHHHHHHHHcC--CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc--cc--cEEEe-CCCc
Q 016998 66 VRVYMDGCFDLMHYGHANALRQAKALG--DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK--WV--DEVIA-NAPY 138 (379)
Q Consensus 66 ~~V~~~G~FD~lH~GH~~lL~qA~~~~--d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~--~V--D~Vv~-~~p~ 138 (379)
++|+..=+-+++|.||..+++.|.+.+ +.|++-.. + ..+++-=++.+-|++..+.+. +. +.++. ..|.
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~pl----v-G~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPL----V-GWTKPGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEec----c-CCCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 468888999999999999999999977 43433221 1 112234567888888877641 22 33332 2233
Q ss_pred cc-----cHHHHHHHh-hccCccEEEEcCCCC
Q 016998 139 AI-----TEQFMNRLF-NEHKIDYIIHGDDPC 164 (379)
Q Consensus 139 ~~-----t~efl~~ll-~~~~~d~VV~GdD~~ 164 (379)
.. .+..+..++ +.++|.++++|-|..
T Consensus 232 ~mryAGPrEallhAiirkN~GcThfIvGrDHA 263 (353)
T cd00517 232 PMRYAGPREALWHAIIRKNYGATHFIVGRDHA 263 (353)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 21 134455555 459999999999863
No 144
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=92.41 E-value=0.56 Score=44.21 Aligned_cols=93 Identities=19% Similarity=0.248 Sum_probs=53.7
Q ss_pred EEEEecccCcCCHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcc----ccEEEe-CCCcc-
Q 016998 67 RVYMDGCFDLMHYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKW----VDEVIA-NAPYA- 139 (379)
Q Consensus 67 ~V~~~G~FD~lH~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~----VD~Vv~-~~p~~- 139 (379)
+|+..=+-+++|.||..+++.|.+.+ +.|.+-.. + ..+++--++.+-|++..+.+.- -+.++. ..|..
T Consensus 22 ~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~pl----v-G~~k~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~m 96 (215)
T PF01747_consen 22 RVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPL----V-GPTKPGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLPM 96 (215)
T ss_dssp SEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEB----E-SB-STTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEec----c-CCCCcCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCchh
Confidence 46777779999999999999999986 65555332 2 1122345678888887775311 122332 12221
Q ss_pred -cc---HHHHHHHh-hccCccEEEEcCCCC
Q 016998 140 -IT---EQFMNRLF-NEHKIDYIIHGDDPC 164 (379)
Q Consensus 140 -~t---~efl~~ll-~~~~~d~VV~GdD~~ 164 (379)
+. +.-+..++ +.++|.++++|.|..
T Consensus 97 r~aGPrEallhAiirkN~GcTh~IvGrdhA 126 (215)
T PF01747_consen 97 RYAGPREALLHAIIRKNYGCTHFIVGRDHA 126 (215)
T ss_dssp --SHHHHHHHHHHHHHHTT-SEEEE-TTTT
T ss_pred cccCcHHHHHHHHHHHHCCCceEEeCCcCC
Confidence 11 24445555 459999999999974
No 145
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=92.02 E-value=0.27 Score=52.08 Aligned_cols=64 Identities=22% Similarity=0.415 Sum_probs=41.9
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCc-------chhccCCCCCCCCCHHHHHHHHHHccCcCceEeC
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ-------IVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIG 328 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~-------~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~ 328 (379)
++.+++ |-=-+|.||++++++|++.+|.+||.|.-+. ...+ ||- ++++=+..+++. .||.|+..
T Consensus 21 ~ig~VP-TMG~LH~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~~~-----YPr-~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 21 TIGFVP-TMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLER-----YPR-TLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred cEEEEC-CCcchhHHHHHHHHHHHHhCCEEEEEEccCcccCCCchhhhh-----CCC-CHHHHHHHHHhc-CCCEEECC
Confidence 444443 4445899999999999999999999996442 2221 444 445444444443 57866653
No 146
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=91.95 E-value=2.7 Score=39.43 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=46.1
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcC----C-eEEEEEccchhhhccCCCCCCCHHHHHHHHhc
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALG----D-ELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~----d-~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~ 125 (379)
+...++.|+|.++-.+|..+++-|+..- . +++=|+-| |.-..+|++-+.+.-.|+.|++.
T Consensus 8 ~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~El 72 (234)
T KOG3199|consen 8 PVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVEL 72 (234)
T ss_pred eEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHh
Confidence 4456889999999999999999999852 2 35556554 43345666789999999999985
No 147
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=91.42 E-value=0.42 Score=46.75 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=34.8
Q ss_pred CeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCC--CCCCCCCHHHHHHHHHHccCcCceEe
Q 016998 256 ARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRG--SYHPIMHLHERSLSVLACRYVDEVII 327 (379)
Q Consensus 256 ~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg--~~~pi~~~~eR~~~v~~~~~Vd~Vii 327 (379)
+++.+++ |-=-+|.||++++++|++.+|.+||.|.-+..=-.... ..||- +++.=+..+++. .||-|+.
T Consensus 22 ~~igfVP-TMGaLHeGHlsLi~~A~~~~d~vVVSIFVNP~QF~~~eD~~~YPR-~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 22 KTIGFVP-TMGALHEGHLSLIRRARAENDVVVVSIFVNPTQFGPNEDFDKYPR-TLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp SSEEEEE-E-SS--HHHHHHHHHHHHHSSEEEEEE---GGGSSTTSHTTTS----HHHHHHHHHHT-T-SEEE-
T ss_pred CeEEEEC-CCchhhHHHHHHHHHHHhCCCEEEEEECcCcccCCCcchhhhCCC-ChHHHHHHHhcc-CCCEEEc
Confidence 4444443 22236999999999999999999999975532111000 01343 444444444443 5886655
No 148
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.07 E-value=2.6 Score=45.28 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=59.9
Q ss_pred CeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc---cccEEEe-CCCcc-
Q 016998 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK---WVDEVIA-NAPYA- 139 (379)
Q Consensus 65 ~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~---~VD~Vv~-~~p~~- 139 (379)
-++|+..=+-+++|.||..+++.|.+.+|.. +-+++ .+-. +.+--++.+-|++..+.+. --+.++. ..|..
T Consensus 186 w~~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~-~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m 261 (568)
T PRK05537 186 WRRVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGM-TKPGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAM 261 (568)
T ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCC-CCCCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchh
Confidence 3468889999999999999999999988732 22333 1211 1134567888888777631 1122221 12221
Q ss_pred ----ccHHHHHHHh-hccCccEEEEcCCCC
Q 016998 140 ----ITEQFMNRLF-NEHKIDYIIHGDDPC 164 (379)
Q Consensus 140 ----~t~efl~~ll-~~~~~d~VV~GdD~~ 164 (379)
..+..+..++ +.++|.++++|-|..
T Consensus 262 ryaGpreai~hAi~r~N~Gcth~ivGrdhA 291 (568)
T PRK05537 262 RMAGPREALWHAIIRRNYGCTHFIVGRDHA 291 (568)
T ss_pred cccCcHHHHHHHHHHHhCCCCeEEECCCCC
Confidence 1134455555 459999999998864
No 149
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=89.81 E-value=4.2 Score=41.61 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred EEEEcCccccCChHHHHHHHHHHhc--CCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-c-CcC--ceEeC---
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YVD--EVIIG--- 328 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~--gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~Vd--~Vii~--- 328 (379)
.|+--=+||++|.||..+.+.|.+. .|.|++-..-- ..| .-.++.+-|+.+++.+ + |-. .+++.
T Consensus 185 ~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g----~~k---~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 257 (383)
T TIGR00339 185 TVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG----LTK---PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP 257 (383)
T ss_pred eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC----CCC---CCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 3444788999999999999999987 68665544322 223 2578999999888776 2 322 33221
Q ss_pred ------CCCCchHH--HHHHcCCcEEEEcCCCCCC-------------------CC--CCCCceEEEEeeeccee
Q 016998 329 ------APWEVTKD--MITTFNICLVVHGTVSETN-------------------TP--LTVSLQFLYLPLINYCI 374 (379)
Q Consensus 329 ------~~~~~~~~--~i~~~~~d~vv~G~d~~~~-------------------~~--l~~~~evv~lp~~~~~~ 374 (379)
.|-+.... +.+++++..++-|.|...- +. -+.+++++.++...+|.
T Consensus 258 ~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~v~~~~~~Yc~ 332 (383)
T TIGR00339 258 LAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQELFEKYKAELGIKIVPFEHVAYCP 332 (383)
T ss_pred hHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHHHHHHhCccccCceEEecceeEEEc
Confidence 12222223 4566789999999663211 11 24578888887776663
No 150
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=89.11 E-value=0.89 Score=42.80 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=46.4
Q ss_pred hhcccCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhhh-ccCC--CCCCCHHHHHHHHhcCccccEE
Q 016998 56 HKKKCGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEII-ANKG--PPVLSMEERLALVSGLKWVDEV 132 (379)
Q Consensus 56 ~~~~~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~-~~K~--~pi~t~eER~~~l~~~~~VD~V 132 (379)
...+++..+ ++-..-+---+|-||..|++|+++..++.+|.+.-+|.-. +... ...-++..-+..++++ +||.|
T Consensus 16 ~~~~R~~g~--tIgfVPTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L-gvdvv 92 (283)
T KOG3042|consen 16 TQELRETGE--TIGFVPTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL-GVDVV 92 (283)
T ss_pred HHHHHhcCC--eEEEecccccccccHHHHHHHHHhhCceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc-CceEE
Confidence 344455432 3333344555899999999999999998888776655421 1111 1122344556667777 77766
Q ss_pred Ee
Q 016998 133 IA 134 (379)
Q Consensus 133 v~ 134 (379)
+.
T Consensus 93 fa 94 (283)
T KOG3042|consen 93 FA 94 (283)
T ss_pred Ec
Confidence 63
No 151
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=88.75 E-value=0.44 Score=46.32 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=31.7
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCc
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~ 294 (379)
++++.+++ +---+|.||++++++|++..|.+||.|.-+.
T Consensus 21 gk~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP 59 (285)
T COG0414 21 GKRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNP 59 (285)
T ss_pred CCEEEEEc-CCcccchHHHHHHHHHhhcCCeEEEEEEeCh
Confidence 45556554 4556999999999999999999999998653
No 152
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=72.16 E-value=6.5 Score=37.16 Aligned_cols=39 Identities=13% Similarity=0.486 Sum_probs=32.5
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCc
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~ 294 (379)
+++|.+++ +--.+|-||.++.+++.+..++.+|.|.-+.
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP 61 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKENTYTVVSIFVNP 61 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhhCceEEEEEEech
Confidence 45666665 4567999999999999999999999998664
No 153
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=72.06 E-value=14 Score=34.87 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=46.8
Q ss_pred EEEEcCccccCChHHHHHHHHHHh----cCC-EEEEEEecCcchhccCCCCCCCCCHHHHHHHHH-HccCcCceEeCCC
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQ----LGD-FLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVL-ACRYVDEVIIGAP 330 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~----~gd-~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~-~~~~Vd~Vii~~~ 330 (379)
+.+-.|+|.+.+.+|+.+++-|+. .+. .++=|+-|- .-..+|. +.+.+..-|+.+++ +|+.-+.+-++.+
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSP-V~DaYkK--KgLipa~hrv~~~ElAt~~Skwl~vD~w 85 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSP-VGDAYKK--KGLIPAYHRVRMVELATETSKWLMVDGW 85 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecc-cchhhhc--cccchhhhHHHHHHhhhccccceecchh
Confidence 455678999999999999999984 233 456666643 1224443 36778888998884 4554445555443
No 154
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=70.67 E-value=1.3 Score=46.43 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=26.6
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcC
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLG 283 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~g 283 (379)
++++++..|+||.+|.||+++|.++..-|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 57889999999999999999999988765
No 155
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=47.40 E-value=9.3 Score=39.96 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=25.6
Q ss_pred CCeEEEEecccCcCCHHHHHHHHHHHHcC
Q 016998 64 KRVRVYMDGCFDLMHYGHANALRQAKALG 92 (379)
Q Consensus 64 ~~~~V~~~G~FD~lH~GH~~lL~qA~~~~ 92 (379)
+.+.+++-||||.+|.||+.+|+++..-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 45678999999999999999999998765
No 156
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=43.09 E-value=2.1e+02 Score=29.47 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=68.9
Q ss_pred eEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc-c-CcC--ceEeCC-C-
Q 016998 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC-R-YVD--EVIIGA-P- 330 (379)
Q Consensus 257 ~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~-~-~Vd--~Vii~~-~- 330 (379)
+.|+--=+.+++|.+|..+.+.|.+.+|-|++-- .+-..| .--++.+-|+...+++ + |.+ .|++.. |
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~d~lll~p----lvG~~k---~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 259 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIVDGLLLNP----LVGETK---SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTPA 259 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhcCeEEEec----CcCCCC---CCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 3455567799999999999999999999555411 122223 2356888899888888 2 332 343321 1
Q ss_pred ----CCchH-----HHHHHcCCcEEEEcCCCCCC-------------CC---CCCCceEEEEeeeccee
Q 016998 331 ----WEVTK-----DMITTFNICLVVHGTVSETN-------------TP---LTVSLQFLYLPLINYCI 374 (379)
Q Consensus 331 ----~~~~~-----~~i~~~~~d~vv~G~d~~~~-------------~~---l~~~~evv~lp~~~~~~ 374 (379)
.+..+ -+-+++++.-++-|.|...- +. -+.+++++.++...+|.
T Consensus 260 ~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g~~Y~~~~aq~i~~~~~~~~l~I~~v~~~~~~Yc~ 328 (391)
T PRK04149 260 AMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFTEEELGITPLKFEEAFYCP 328 (391)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCccccCCCchHHHHHHhCCcccCCceEEecceeEEec
Confidence 12222 23356799999999764321 12 24567888777666663
No 157
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.33 E-value=71 Score=34.02 Aligned_cols=124 Identities=23% Similarity=0.377 Sum_probs=63.9
Q ss_pred CCCCCeEEEEec--ccCcCCHHHHH------HHHHHHH-cCCe-EEEEEc-c--chhh-hccC-C---CCCCCHHHH---
Q 016998 61 GKKKRVRVYMDG--CFDLMHYGHAN------ALRQAKA-LGDE-LVVGVV-S--DEEI-IANK-G---PPVLSMEER--- 119 (379)
Q Consensus 61 ~~~~~~~V~~~G--~FD~lH~GH~~------lL~qA~~-~~d~-LiVgV~-s--d~~i-~~~K-~---~pi~t~eER--- 119 (379)
..+++...|++| .+|--|.||+. +|++..+ +.++ +....+ + |.-| .+.. . ......++|
T Consensus 51 ~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~ 130 (586)
T KOG2007|consen 51 NNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCY 130 (586)
T ss_pred CCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHH
Confidence 345557789999 69999999975 5666555 4332 222221 2 2223 2221 1 122456666
Q ss_pred --HHHHhcCccccEEEeCCCcccc---------HHHHHHHhhccCccEEEEcCCCCCCCCCch-HHHHHHhCCeEEEecc
Q 016998 120 --LALVSGLKWVDEVIANAPYAIT---------EQFMNRLFNEHKIDYIIHGDDPCLLPDGTD-AYALAKKVGRYKQIKR 187 (379)
Q Consensus 120 --~~~l~~~~~VD~Vv~~~p~~~t---------~efl~~ll~~~~~d~VV~GdD~~~g~~g~~-~y~~lk~~g~~~~v~r 187 (379)
.+..+.+.-.. |. .|-..+ .+|++++++. +..|.+ .-+..|..+..+ .|..|. |+...+..
T Consensus 131 ~e~eF~~DM~~Ln-vL--pPtv~tRVSeyvp~II~fIqkIIdn-G~aY~~-dGsVYFdv~kf~~~YgKL~--G~~~~~~~ 203 (586)
T KOG2007|consen 131 YEEEFLQDMAALN-VL--PPTVQTRVSEYVPQIIKFIQKIIDN-GYAYAV-DGSVYFDVDKFPHSYGKLV--GQRKNLQE 203 (586)
T ss_pred HHHHHHHHHHHhC-CC--CCcccchhhhchHHHHHHHHHHHhC-Cceeee-CCcEEEecccccchhhhhc--Cchhhccc
Confidence 22222221111 11 111111 2788888754 778888 445556666555 476666 55444444
Q ss_pred CCCC
Q 016998 188 TEGV 191 (379)
Q Consensus 188 ~~~V 191 (379)
.++.
T Consensus 204 gEg~ 207 (586)
T KOG2007|consen 204 GEGV 207 (586)
T ss_pred CcCc
Confidence 4543
No 158
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=34.28 E-value=5.1e+02 Score=26.28 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=67.5
Q ss_pred EEEcCccccCChHHHHHHHHHHhcC--CEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc--cCc--CceEeCC-C-
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYV--DEVIIGA-P- 330 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~g--d~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~V--d~Vii~~-~- 330 (379)
|+--=+.+++|.+|..+++.|.+.. |-|+|--. +-..| .--++.+-|+...+++ .|. |.+++.. |
T Consensus 159 VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~pl----vG~~k---~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 159 VVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPL----VGWTK---PGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred EEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEec----cCCCC---CCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 4446779999999999999999876 43333211 11223 2356888899888887 466 6665532 1
Q ss_pred ----CCchHH-----HHHHcCCcEEEEcCCCCC--------C--------CCC--CCCceEEEEeeeccee
Q 016998 331 ----WEVTKD-----MITTFNICLVVHGTVSET--------N--------TPL--TVSLQFLYLPLINYCI 374 (379)
Q Consensus 331 ----~~~~~~-----~i~~~~~d~vv~G~d~~~--------~--------~~l--~~~~evv~lp~~~~~~ 374 (379)
.+..+- +-+++++.-++-|.|... + +.+ +.+++++.++...+|.
T Consensus 232 ~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~ 302 (353)
T cd00517 232 PMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHPGDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCP 302 (353)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCccccCCcchhHHHHHhCcccCCceEEecceeEEec
Confidence 122222 335579999999965321 1 122 2678888887766663
No 159
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=29.33 E-value=2.6e+02 Score=24.60 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=48.4
Q ss_pred EEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHccCcCceEeCCCC-------
Q 016998 259 VYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLACRYVDEVIIGAPW------- 331 (379)
Q Consensus 259 v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~~~Vd~Vii~~~~------- 331 (379)
||.+=.-+-++.--.+++..|++++..+.+.+..+.. .++ ...+. ...+|+|+.....
T Consensus 4 V~~E~~~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~-------------~~~-~~~~~-~~Gad~v~~~~~~~~~~~~~ 68 (168)
T cd01715 4 VLAEHRNGELRELTLEAVTAARKLGGEVTALVIGSGA-------------EAV-AAALK-AYGADKVLVAEDPALAHYLA 68 (168)
T ss_pred EEEEecCCChHHHHHHHHHHHHHhCCCEEEEEECCCh-------------HHH-HHHHH-hcCCCEEEEecChhhcccCh
Confidence 3443333346677788999999997656555543310 011 11122 2368988874321
Q ss_pred ----CchHHHHHHcCCcEEEEcCCCCCC
Q 016998 332 ----EVTKDMITTFNICLVVHGTVSETN 355 (379)
Q Consensus 332 ----~~~~~~i~~~~~d~vv~G~d~~~~ 355 (379)
....+++++.+|++|+-|......
T Consensus 69 ~~~a~al~~~i~~~~p~~Vl~~~t~~g~ 96 (168)
T cd01715 69 EPYAPALVALAKKEKPSHILAGATSFGK 96 (168)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccc
Confidence 124566778899999999876554
No 160
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=26.89 E-value=71 Score=32.71 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=69.3
Q ss_pred CCeEEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc--cCc--CceEeCC-
Q 016998 255 NARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYV--DEVIIGA- 329 (379)
Q Consensus 255 ~~~~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~V--d~Vii~~- 329 (379)
+-++|+..-|+++.|.||-.+.+.|....|-|+|=-- |-..|. -=+..+-|++..+++ .|- |.+++.-
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdgllv~pl----VG~tk~---gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~ 254 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPL----VGATKP---GDIPDEVRMEYYEALLKHYYPPDRVFLSVL 254 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhcCcEEEEee----eccccC---CCchHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 3577888899999999999999999999985433221 112232 234566788777666 333 5555521
Q ss_pred --------C-CCchHHHH-HHcCCcEEEEcCCCCCC--------------CC-CCCCceEEEEeeecce
Q 016998 330 --------P-WEVTKDMI-TTFNICLVVHGTVSETN--------------TP-LTVSLQFLYLPLINYC 373 (379)
Q Consensus 330 --------~-~~~~~~~i-~~~~~d~vv~G~d~~~~--------------~~-l~~~~evv~lp~~~~~ 373 (379)
| +.+...++ +++++.-++.|-|-..- +. -+-|++.+.|+-.-+|
T Consensus 255 ~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC 323 (397)
T COG2046 255 PAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYC 323 (397)
T ss_pred HHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeec
Confidence 1 22223333 34689999999664321 11 2457777777766666
No 161
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.91 E-value=1.8e+02 Score=29.38 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=16.0
Q ss_pred CcCCHHHHHH-HHHHHHc-CCeEEEEEcc
Q 016998 75 DLMHYGHANA-LRQAKAL-GDELVVGVVS 101 (379)
Q Consensus 75 D~lH~GH~~l-L~qA~~~-~d~LiVgV~s 101 (379)
||+|+|=..+ +..|+++ +...++|+..
T Consensus 219 DGVHLgq~dl~~~~aR~llg~~~iIG~S~ 247 (347)
T PRK02615 219 DGVHLGQEDLPLAVARQLLGPEKIIGRST 247 (347)
T ss_pred CEEEeChhhcCHHHHHHhcCCCCEEEEec
Confidence 7788876554 4566663 3345666654
No 162
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=24.40 E-value=38 Score=22.39 Aligned_cols=8 Identities=63% Similarity=1.373 Sum_probs=6.3
Q ss_pred ceeeeecC
Q 016998 372 YCICYIHN 379 (379)
Q Consensus 372 ~~~~~~~~ 379 (379)
...|||||
T Consensus 7 etvcyi~n 14 (35)
T PF08115_consen 7 ETVCYIHN 14 (35)
T ss_pred CcEEEEec
Confidence 46799997
No 163
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=22.76 E-value=4e+02 Score=25.78 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcC-cccc---EEEeCCCccccHHHHHH--Hhh
Q 016998 78 HYGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGL-KWVD---EVIANAPYAITEQFMNR--LFN 150 (379)
Q Consensus 78 H~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~-~~VD---~Vv~~~p~~~t~efl~~--ll~ 150 (379)
.-+..++++...+.| +-+++.=++-+ .+.+|.+||.++++.. +.++ -|+.+... -+.+-++. ..+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE-------~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGE-------FFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcC-------cccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 357888888888876 44444322222 5789999999999852 1121 23444443 23333332 335
Q ss_pred ccCccEEEEcCCCCCCCCCchHHHHHHhCCe-----EEEeccCC-CCCHHHHHHHHH
Q 016998 151 EHKIDYIIHGDDPCLLPDGTDAYALAKKVGR-----YKQIKRTE-GVSSTDIVGRIL 201 (379)
Q Consensus 151 ~~~~d~VV~GdD~~~g~~g~~~y~~lk~~g~-----~~~v~r~~-~VSST~Ir~rI~ 201 (379)
+.++|.+++-.-+.+..+..+.++..+...+ +....++. .+|.. +..+|.
T Consensus 92 ~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~-~l~~L~ 147 (289)
T cd00951 92 KAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTAD-SLARLA 147 (289)
T ss_pred HhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHH-HHHHHH
Confidence 6899999998877665554444444443322 23333432 46654 444554
No 164
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.62 E-value=55 Score=32.20 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=45.1
Q ss_pred ccCcCC------------HHHHHHHH----HHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEe
Q 016998 73 CFDLMH------------YGHANALR----QAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIA 134 (379)
Q Consensus 73 ~FD~lH------------~GH~~lL~----qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~ 134 (379)
+||+-| -|...++. .|.+.| |-+.+=+|+||+-...-++.-+++++=.++++.++.++.++.
T Consensus 195 i~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~l~~i~~~~~ 273 (281)
T PRK12457 195 IFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQVKALDDLVK 273 (281)
T ss_pred EEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHHHHHHHHHHc
Confidence 389999 47777664 444444 889999999998666666777788888788887766665544
No 165
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=22.47 E-value=5.1e+02 Score=27.96 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=65.8
Q ss_pred EEEEcCccccCChHHHHHHHHHHhcCCEEEEEEecCcchhccCCCCCCCCCHHHHHHHHHHc--cCc-CceEeCC-C---
Q 016998 258 VVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVSEHRGSYHPIMHLHERSLSVLAC--RYV-DEVIIGA-P--- 330 (379)
Q Consensus 258 ~v~~~G~FDl~H~GHi~~L~~A~~~gd~liVgv~~D~~v~~~Kg~~~pi~~~~eR~~~v~~~--~~V-d~Vii~~-~--- 330 (379)
.|+--=+.+++|.+|..+++.|.+..|.. |-++. .+-..| .--++.+-|+...+++ ++- |.+++.. |
T Consensus 188 ~v~afqtrnP~Hr~He~l~~~a~~~~d~~-lll~p--~~G~~k---~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~p~~m 261 (568)
T PRK05537 188 RVVAFQTRNPLHRAHEELTKRAAREVGAN-LLIHP--VVGMTK---PGDIDHFTRVRCYEALLDKYPPATTLLSLLPLAM 261 (568)
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHhcCCe-EEEec--CCCCCC---CCCCCHHHHHHHHHHHHHhCCCCcEEEEeccchh
Confidence 34446779999999999999999988732 22221 121223 2366888899877776 222 2333321 1
Q ss_pred --CCch-----HHHHHHcCCcEEEEcCCCCCC-------------------CCC--CCCceEEEEeeeccee
Q 016998 331 --WEVT-----KDMITTFNICLVVHGTVSETN-------------------TPL--TVSLQFLYLPLINYCI 374 (379)
Q Consensus 331 --~~~~-----~~~i~~~~~d~vv~G~d~~~~-------------------~~l--~~~~evv~lp~~~~~~ 374 (379)
.+.. +-+-+++++..++-|.|.... +.. +.+++++.++...+|.
T Consensus 262 ryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~a~~i~~~~~~~l~i~~~~~~~~~Y~~ 333 (568)
T PRK05537 262 RMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYADEIGITMVPFKEMVYVQ 333 (568)
T ss_pred cccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchHHHHHHHhCccccCceEEecceeEEEc
Confidence 1222 223356799999999653221 112 4578888877666663
No 166
>PRK00536 speE spermidine synthase; Provisional
Probab=22.29 E-value=82 Score=30.60 Aligned_cols=39 Identities=33% Similarity=0.303 Sum_probs=28.0
Q ss_pred cCCCCCeEEEEecccCcCCHHHHHHHHHHHHcCCeEEEEEccchhh
Q 016998 60 CGKKKRVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEI 105 (379)
Q Consensus 60 ~~~~~~~~V~~~G~FD~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i 105 (379)
..-+++++|+++|-.||- .+|+..+.-. -++.|.-|+.+
T Consensus 68 ~~h~~pk~VLIiGGGDGg------~~REvLkh~~-~v~mVeID~~V 106 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLE------LAHQLFKYDT-HVDFVQADEKI 106 (262)
T ss_pred hhCCCCCeEEEEcCCchH------HHHHHHCcCC-eeEEEECCHHH
Confidence 344567899999999984 6667766654 45557788875
No 167
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=22.20 E-value=61 Score=31.58 Aligned_cols=58 Identities=28% Similarity=0.417 Sum_probs=40.8
Q ss_pred ccCcCC------------HHHHHHHHH----HHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCcccc
Q 016998 73 CFDLMH------------YGHANALRQ----AKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVD 130 (379)
Q Consensus 73 ~FD~lH------------~GH~~lL~q----A~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD 130 (379)
+||+-| -|...++.- |.+.| |-|.+=+|+||+-....++--+++++=.++++.++.++
T Consensus 187 i~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i~ 261 (264)
T PRK05198 187 IFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLKAID 261 (264)
T ss_pred EEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHHH
Confidence 489999 588877753 33333 88999999999865555566677777777777655443
No 168
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=6.8e+02 Score=25.31 Aligned_cols=108 Identities=21% Similarity=0.198 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccccHHHHHHHhhccCccEEEEcC
Q 016998 82 ANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGD 161 (379)
Q Consensus 82 ~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~t~efl~~ll~~~~~d~VV~Gd 161 (379)
+++++.|.+.+.++.|.++.-..- ..+-..++=+..+..+ +||-|+.+.|. +-.++.+..|+.=+|.+
T Consensus 52 ~e~i~~ah~~gkk~~V~~N~~~~~-----~~~~~~~~~l~~l~e~-GvDaviv~Dpg------~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 52 AEAVELAHSAGKKVYVAVNTLLHN-----DELETLERYLDRLVEL-GVDAVIVADPG------LIMLARERGPDLPIHVS 119 (347)
T ss_pred HHHHHHHHHcCCeEEEEecccccc-----chhhHHHHHHHHHHHc-CCCEEEEcCHH------HHHHHHHhCCCCcEEEe
Confidence 455666666777788887763211 0111123333444454 89999998774 22344555677666665
Q ss_pred CCCCCCCCchHHHHHHhCCeEEEeccCCCCCHHHHHHHHHhc
Q 016998 162 DPCLLPDGTDAYALAKKVGRYKQIKRTEGVSSTDIVGRILSS 203 (379)
Q Consensus 162 D~~~g~~g~~~y~~lk~~g~~~~v~r~~~VSST~Ir~rI~~~ 203 (379)
-...-.+ ....+.+++.|-.+.+ -...+|..+|++-+.+.
T Consensus 120 ~q~~v~N-~~~~~f~~~~G~~rvV-l~rEls~~ei~~i~~~~ 159 (347)
T COG0826 120 TQANVTN-AETAKFWKELGAKRVV-LPRELSLEEIKEIKEQT 159 (347)
T ss_pred eeEecCC-HHHHHHHHHcCCEEEE-eCccCCHHHHHHHHHhC
Confidence 5544433 3445677777733322 33468999999877654
No 169
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.78 E-value=1.8e+02 Score=29.07 Aligned_cols=91 Identities=21% Similarity=0.167 Sum_probs=48.4
Q ss_pred CcCCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeCCCccc-------c-HHHH-
Q 016998 75 DLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIANAPYAI-------T-EQFM- 145 (379)
Q Consensus 75 D~lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~~p~~~-------t-~efl- 145 (379)
|+-|.+.... .++.++.+.-+|.-||...... ..+.=.+ ++.++.+..-++|=-+..-.+|.. + .+++
T Consensus 166 DlSH~s~kt~-~Dvl~~s~~PviaSHSN~~al~-~h~RNl~-D~qlkaI~~~gGvIgv~~~~~fl~~~~~~~atldd~v~ 242 (313)
T COG2355 166 DLSHLSDKTF-WDVLDLSKAPVVASHSNARALV-DHPRNLS-DEQLKAIAETGGVIGVNFIPAFLRPGGAARATLDDLVR 242 (313)
T ss_pred EecccCCccH-HHHHhccCCceEEecCCchhcc-CCCCCCC-HHHHHHHHhcCCEEEEEeehhhccCCCCCCCCHHHHHH
Confidence 6677776443 3444555555665677665321 1112223 445555554456544433222222 2 2333
Q ss_pred --HHHhhccCccEEEEcCCCCCCCC
Q 016998 146 --NRLFNEHKIDYIIHGDDPCLLPD 168 (379)
Q Consensus 146 --~~ll~~~~~d~VV~GdD~~~g~~ 168 (379)
+.+.+..+.|+|..|.||.-+..
T Consensus 243 hI~h~v~~~G~dhVglGsDf~g~~~ 267 (313)
T COG2355 243 HIDHFVELVGIDHVGLGSDFDGGTG 267 (313)
T ss_pred HHHHHHHhcCcceeEecccccCCCC
Confidence 23446679999999999976544
No 170
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.53 E-value=5.6e+02 Score=24.60 Aligned_cols=92 Identities=23% Similarity=0.164 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc-ccc---EEEeCCCccccHHHHHH--Hhhc
Q 016998 79 YGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK-WVD---EVIANAPYAITEQFMNR--LFNE 151 (379)
Q Consensus 79 ~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~-~VD---~Vv~~~p~~~t~efl~~--ll~~ 151 (379)
-+-.++++...+.| +-+++.=++-+ .+.+|.+||.++++... .++ .++.+..-.-+++-++. ..++
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~GE-------~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTGE-------SPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCc-------cccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHH
Confidence 57778888887766 44443222222 47899999999998521 111 23333322223333332 3356
Q ss_pred cCccEEEEcCCCCCCCCCchHHHHHH
Q 016998 152 HKIDYIIHGDDPCLLPDGTDAYALAK 177 (379)
Q Consensus 152 ~~~d~VV~GdD~~~g~~g~~~y~~lk 177 (379)
.++|.+++..-+.+.....+-++..+
T Consensus 95 ~G~d~v~~~pP~~~~~~~~~i~~~~~ 120 (292)
T PRK03170 95 AGADGALVVTPYYNKPTQEGLYQHFK 120 (292)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHH
Confidence 89999999877766655444444444
No 171
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.37 E-value=3.8e+02 Score=25.47 Aligned_cols=93 Identities=22% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcC-CeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCc----cccEEEeCCCccccHHHHHH--Hhhc
Q 016998 79 YGHANALRQAKALG-DELVVGVVSDEEIIANKGPPVLSMEERLALVSGLK----WVDEVIANAPYAITEQFMNR--LFNE 151 (379)
Q Consensus 79 ~GH~~lL~qA~~~~-d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~----~VD~Vv~~~p~~~t~efl~~--ll~~ 151 (379)
-|=.++++...+.| +-+++.=++-+ .+.+|.+||.++++... +--.|+.+..-.-+.+.++. ..++
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE-------~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGE-------APTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcc-------cccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 35566677766655 43333222222 47789999999987521 11123444443334444432 3356
Q ss_pred cCccEEEEcCCCCCCCCCchHHHHHHh
Q 016998 152 HKIDYIIHGDDPCLLPDGTDAYALAKK 178 (379)
Q Consensus 152 ~~~d~VV~GdD~~~g~~g~~~y~~lk~ 178 (379)
.++|.+++-.-+.+.....+.++..+.
T Consensus 91 ~Gad~v~v~pP~y~~~~~~~~~~~~~~ 117 (281)
T cd00408 91 AGADGVLVVPPYYNKPSQEGIVAHFKA 117 (281)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHHH
Confidence 899999888776665544444444443
No 172
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=21.13 E-value=1e+02 Score=31.01 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=33.7
Q ss_pred CHHHHHHHHhcCccccEEEeCCCccccHHHHHHHhhccCccEEEEcCC
Q 016998 115 SMEERLALVSGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDD 162 (379)
Q Consensus 115 t~eER~~~l~~~~~VD~Vv~~~p~~~t~efl~~ll~~~~~d~VV~GdD 162 (379)
.-+|=.+++.. .|.||-+.||+.-.||+..|+ +++-+++|+|.-
T Consensus 125 rS~E~i~Ll~e---ADIVVTNPPFSLFrEyv~~Li-~~~KkFlIIGN~ 168 (336)
T PF13651_consen 125 RSDECIELLKE---ADIVVTNPPFSLFREYVAQLI-EYDKKFLIIGNI 168 (336)
T ss_pred CcHHHHHHHhc---CCEEEeCCCcHHHHHHHHHHH-HhCCCEEEEecc
Confidence 34566666654 899999999988889998665 568899999843
No 173
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=21.01 E-value=5.3e+02 Score=22.53 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEEccchhhhccCCCCCCCHHHHHHHHhcCccccEEEeC-CC-c-cccH----HHHHHHh
Q 016998 77 MHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDEVIAN-AP-Y-AITE----QFMNRLF 149 (379)
Q Consensus 77 lH~GH~~lL~qA~~~~d~LiVgV~sd~~i~~~K~~pi~t~eER~~~l~~~~~VD~Vv~~-~p-~-~~t~----efl~~ll 149 (379)
++.--.+++..|++++..+.+.+..++. .++ .+.+..+ ++|+++.- .+ + .++. +-+.+++
T Consensus 13 l~~~s~el~~~A~~l~~~v~~v~~G~~~-----------~~~-~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~al~~~i 79 (168)
T cd01715 13 LRELTLEAVTAARKLGGEVTALVIGSGA-----------EAV-AAALKAY-GADKVLVAEDPALAHYLAEPYAPALVALA 79 (168)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEECCCh-----------HHH-HHHHHhc-CCCEEEEecChhhcccChHHHHHHHHHHH
Confidence 4555678899999997555554443211 111 2222333 88888752 11 1 1111 3344566
Q ss_pred hccCccEEEEcCCC
Q 016998 150 NEHKIDYIIHGDDP 163 (379)
Q Consensus 150 ~~~~~d~VV~GdD~ 163 (379)
++.+|+.|+.|...
T Consensus 80 ~~~~p~~Vl~~~t~ 93 (168)
T cd01715 80 KKEKPSHILAGATS 93 (168)
T ss_pred HhcCCCEEEECCCc
Confidence 77889999999885
Done!