BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017001
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
 pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
           Transporter Yiip
          Length = 283

 Score = 33.1 bits (74), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/238 (18%), Positives = 98/238 (41%), Gaps = 23/238 (9%)

Query: 126 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 177
           +LL  KIFA   +GS++I A+ +DSL+D+ A         ++ N+ + +Y +        
Sbjct: 15  LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 65

Query: 178 -GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 236
            G  + + +  +  +  ++     + +  ++ L+   P        +  + +++    +V
Sbjct: 66  FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 125

Query: 237 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWW--IDPAGAILLAVY 294
               W+  + + ++ VRA    +  D               S+Y W   D   A+ + +Y
Sbjct: 126 SFQRWV-VRRTQSQAVRADMLHYQSDVMMNGAILLALGL--SWYGWHRADALFALGIGIY 182

Query: 295 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEV 352
            + +      E   SL+ ++ P E  Q++  +V   P V     +R    G   F+++
Sbjct: 183 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQI 240


>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
 pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
          Length = 300

 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/238 (18%), Positives = 98/238 (41%), Gaps = 23/238 (9%)

Query: 126 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 177
           +LL  KIFA   +GS++I A+ +DSL+D+ A         ++ N+ + +Y +        
Sbjct: 22  LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 72

Query: 178 -GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 236
            G  + + +  +  +  ++     + +  ++ L+   P        +  + +++    +V
Sbjct: 73  FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 132

Query: 237 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWW--IDPAGAILLAVY 294
               W+  + + ++ VRA    +  D               S+Y W   D   A+ + +Y
Sbjct: 133 SFQRWV-VRRTQSQAVRADMLHYQSDVMMNGAILLALGL--SWYGWHRADALFALGIGIY 189

Query: 295 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEV 352
            + +      E   SL+ ++ P E  Q++  +V   P V     +R    G   F+++
Sbjct: 190 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQI 247


>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
 pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
           Revealed By Cryo-electron Microscopy
          Length = 306

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 97/241 (40%), Gaps = 11/241 (4%)

Query: 116 AMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAG--GILWFTHVAMKNINIY 173
           A + S    + L+  K+ A + SGS ++ AS  DS  D +A     +   +  +   + +
Sbjct: 14  ASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDH 73

Query: 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGA 233
           +Y  GK   +P+  +  +A +    F +L    E+L+   P +      +  + +I++  
Sbjct: 74  RYGHGK--AEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTL 131

Query: 234 TVV---KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWWIDPAGAIL 290
            +V   K AL     ++ + +V A +  +  D                 +WW D   A+L
Sbjct: 132 ALVLLQKRAL----AATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVL 187

Query: 291 LAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFV 350
           +A Y      +    +  +L+ +    +  Q++  +    P V  +  +R    G   F+
Sbjct: 188 IACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFI 247

Query: 351 E 351
           +
Sbjct: 248 Q 248


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,324,019
Number of Sequences: 62578
Number of extensions: 332926
Number of successful extensions: 638
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 6
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)