Query 017001
Match_columns 379
No_of_seqs 233 out of 1605
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1485 Mitochondrial Fe2+ tra 100.0 1.7E-54 3.6E-59 421.7 31.0 302 75-376 70-384 (412)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 1E-46 2.2E-51 364.8 33.8 261 107-373 5-270 (304)
3 PRK09509 fieF ferrous iron eff 100.0 2.7E-45 5.8E-50 355.3 35.0 258 112-374 8-269 (299)
4 PRK03557 zinc transporter ZitB 100.0 3.2E-42 7E-47 335.5 31.9 246 113-364 17-267 (312)
5 TIGR01297 CDF cation diffusion 100.0 4E-41 8.6E-46 320.6 28.2 243 127-374 2-249 (268)
6 COG1230 CzcD Co/Zn/Cd efflux s 100.0 4.9E-37 1.1E-41 292.2 28.4 250 109-364 16-269 (296)
7 PF01545 Cation_efflux: Cation 100.0 2.1E-38 4.6E-43 303.9 13.6 254 117-375 1-263 (284)
8 KOG1484 Putative Zn2+ transpor 99.9 1.9E-25 4.1E-30 212.0 23.2 252 114-372 34-335 (354)
9 KOG1482 Zn2+ transporter [Inor 99.9 3.7E-25 8.1E-30 212.9 18.0 250 111-365 69-342 (379)
10 KOG1483 Zn2+ transporter ZNT1 99.9 9.8E-24 2.1E-28 203.8 13.7 253 115-372 9-355 (404)
11 COG3965 Predicted Co/Zn/Cd cat 99.9 5.5E-23 1.2E-27 188.4 17.4 256 113-374 18-291 (314)
12 KOG2802 Membrane protein HUEL 99.9 7.9E-21 1.7E-25 181.5 14.0 222 111-375 203-449 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.0 6E-05 1.3E-09 73.5 12.1 98 111-216 117-214 (304)
14 TIGR01297 CDF cation diffusion 97.9 9.6E-05 2.1E-09 70.3 11.1 95 114-216 97-191 (268)
15 PRK09509 fieF ferrous iron eff 97.8 0.00025 5.4E-09 68.9 12.4 95 114-216 118-212 (299)
16 PRK03557 zinc transporter ZitB 97.0 0.0071 1.5E-07 59.2 11.2 90 118-215 129-218 (312)
17 KOG1485 Mitochondrial Fe2+ tra 94.5 0.13 2.8E-06 51.7 7.6 93 115-215 231-323 (412)
18 PF01545 Cation_efflux: Cation 92.1 0.19 4E-06 48.0 4.5 92 117-215 109-203 (284)
19 COG1230 CzcD Co/Zn/Cd efflux s 87.7 9.4 0.0002 37.2 12.0 72 241-312 39-118 (296)
20 PF07444 Ycf66_N: Ycf66 protei 83.8 14 0.0003 29.1 9.0 45 259-303 34-81 (84)
21 COG4858 Uncharacterized membra 80.7 34 0.00074 31.0 11.4 103 194-300 102-210 (226)
22 COG4956 Integral membrane prot 76.8 66 0.0014 31.6 12.9 53 260-312 78-139 (356)
23 PF10934 DUF2634: Protein of u 70.8 21 0.00046 29.5 7.1 51 306-356 52-107 (112)
24 KOG1484 Putative Zn2+ transpor 68.3 56 0.0012 32.4 10.4 86 227-312 38-131 (354)
25 PF06570 DUF1129: Protein of u 66.1 1.1E+02 0.0023 28.0 13.5 17 231-247 185-201 (206)
26 PRK14856 nhaA pH-dependent sod 55.7 2.1E+02 0.0044 29.6 12.3 123 122-267 23-146 (438)
27 PF11381 DUF3185: Protein of u 47.8 65 0.0014 23.6 5.4 48 186-238 6-56 (59)
28 COG1183 PssA Phosphatidylserin 47.5 2.2E+02 0.0047 26.8 10.3 85 225-311 37-121 (234)
29 TIGR02865 spore_II_E stage II 47.1 3.8E+02 0.0083 29.7 13.7 38 173-210 144-181 (764)
30 PRK10263 DNA translocase FtsK; 46.7 5.6E+02 0.012 30.4 15.5 35 266-300 141-175 (1355)
31 PRK09560 nhaA pH-dependent sod 41.3 3.8E+02 0.0083 27.2 11.5 122 123-267 15-138 (389)
32 PHA02975 hypothetical protein; 40.9 1.6E+02 0.0034 22.3 7.1 63 183-245 2-66 (69)
33 COG1955 FlaJ Archaeal flagella 39.1 4.1E+02 0.0089 28.0 11.5 62 30-95 77-140 (527)
34 PRK10764 potassium-tellurite e 38.6 3.9E+02 0.0083 26.1 11.4 22 190-211 14-35 (324)
35 PF11712 Vma12: Endoplasmic re 38.5 2.5E+02 0.0054 23.9 11.1 47 117-163 77-126 (142)
36 cd04870 ACT_PSP_1 CT domains f 38.4 1.5E+02 0.0032 22.0 6.5 56 316-373 9-64 (75)
37 TIGR03221 muco_delta muconolac 38.2 43 0.00093 26.7 3.4 22 348-369 2-23 (90)
38 PF02790 COX2_TM: Cytochrome C 35.6 1.7E+02 0.0037 22.0 6.6 30 172-201 52-81 (84)
39 PF03595 SLAC1: Voltage-depend 35.0 1.9E+02 0.0042 27.9 8.3 22 280-301 106-127 (330)
40 TIGR00816 tdt C4-dicarboxylate 34.4 4.3E+02 0.0093 25.6 10.7 22 280-301 100-121 (320)
41 PRK14855 nhaA pH-dependent sod 33.6 5.1E+02 0.011 26.7 11.1 123 122-267 18-141 (423)
42 PF14535 AMP-binding_C_2: AMP- 33.0 2.4E+02 0.0052 22.1 7.8 42 320-361 6-47 (96)
43 PF13740 ACT_6: ACT domain; PD 31.2 1.7E+02 0.0036 21.9 5.7 53 316-371 12-64 (76)
44 KOG1482 Zn2+ transporter [Inor 31.1 1.9E+02 0.0041 29.2 7.3 68 245-312 94-169 (379)
45 TIGR00473 pssA CDP-diacylglyce 30.9 3.6E+02 0.0078 23.4 10.6 81 225-308 22-102 (151)
46 PF01889 DUF63: Membrane prote 30.2 5E+02 0.011 25.0 9.9 61 225-287 145-215 (273)
47 PRK00907 hypothetical protein; 28.5 1.1E+02 0.0023 24.5 4.3 58 310-369 22-82 (92)
48 TIGR00773 NhaA Na+/H+ antiport 27.6 6.1E+02 0.013 25.6 10.4 80 184-267 51-131 (373)
49 PF04972 BON: BON domain; Int 27.5 42 0.00092 24.0 1.7 30 309-338 29-58 (64)
50 PF02426 MIase: Muconolactone 26.7 87 0.0019 25.0 3.5 23 347-369 2-24 (91)
51 PRK09561 nhaA pH-dependent sod 26.5 6.9E+02 0.015 25.4 12.0 102 184-291 58-170 (388)
52 PF08006 DUF1700: Protein of u 26.2 4.5E+02 0.0098 23.1 13.9 13 41-53 3-15 (181)
53 PF11654 DUF2665: Protein of u 26.0 60 0.0013 22.6 2.1 18 280-297 4-21 (47)
54 PF09685 Tic20: Tic20-like pro 24.9 3.4E+02 0.0075 21.3 9.0 18 160-177 87-104 (109)
55 PF05105 Phage_holin_4: Holin 24.9 3.9E+02 0.0084 21.9 12.6 38 284-323 74-111 (118)
56 PRK14853 nhaA pH-dependent sod 24.7 7.8E+02 0.017 25.3 14.9 125 121-267 16-141 (423)
57 PRK14854 nhaA pH-dependent sod 24.6 7.5E+02 0.016 25.1 11.0 121 124-267 13-134 (383)
58 cd04875 ACT_F4HF-DF N-terminal 24.2 2.9E+02 0.0063 20.2 6.8 56 316-373 9-67 (74)
59 cd04869 ACT_GcvR_2 ACT domains 24.1 3E+02 0.0064 20.3 6.9 54 316-371 9-68 (81)
60 PF02038 ATP1G1_PLM_MAT8: ATP1 23.8 1.1E+02 0.0024 21.6 3.1 28 174-202 6-33 (50)
61 PF07086 DUF1352: Protein of u 23.8 5.5E+02 0.012 23.3 15.6 87 155-246 80-171 (186)
62 COG0428 Predicted divalent hea 23.3 4.1E+02 0.0088 25.3 8.1 79 114-196 180-258 (266)
63 COG2921 Uncharacterized conser 22.6 1.9E+02 0.0041 23.0 4.5 56 310-367 20-78 (90)
64 cd04872 ACT_1ZPV ACT domain pr 22.3 2.2E+02 0.0048 21.7 5.1 57 316-374 11-68 (88)
65 COG0581 PstA ABC-type phosphat 21.5 7.6E+02 0.016 24.0 14.2 81 228-308 82-168 (292)
66 KOG3088 Secretory carrier memb 20.5 8E+02 0.017 23.9 14.1 63 117-180 137-202 (313)
67 PRK00341 hypothetical protein; 20.0 1.8E+02 0.0038 23.1 4.1 58 310-369 22-81 (91)
No 1
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-54 Score=421.69 Aligned_cols=302 Identities=41% Similarity=0.552 Sum_probs=271.4
Q ss_pred hHHHHHHHHHHHHhhHHhhhhhccCccC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHH
Q 017001 75 GEKEYYESQFATLKSFEEVDVLVDSDCF-----IEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLD 149 (379)
Q Consensus 75 ~~~~fy~~q~~~i~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~ 149 (379)
+..+||.+|.+++++|.++......... +++.+.+.+.++++.|+++++|++++++|+++++.+||+|++||++|
T Consensus 70 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavd 149 (412)
T KOG1485|consen 70 NVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVD 149 (412)
T ss_pred ccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4458999999999999988876655221 12222334467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CccchhHH----
Q 017001 150 SLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPK-KMNTVQLE---- 224 (379)
Q Consensus 150 sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~-~~~~~~~~---- 224 (379)
|+.|+++++++|++.+.++++++++||+|++|+||+|.+.++++|+++|++++++|+..+..+.... .+++++..
T Consensus 150 Sl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a 229 (412)
T KOG1485|consen 150 SLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINA 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccch
Confidence 9999999999999999999999999999999999999999999999999999999999998822211 12223333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHhHHhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 017001 225 -WLYSIMIGATVVKLALWIYCKSSGN-KIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSET 302 (379)
Q Consensus 225 -~~i~i~~~s~~v~~~l~~~~r~~~s-~~l~a~a~~~~~D~l~n~~~lla~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~ 302 (379)
|.+++|+....+++.++++|+..++ ..++|.|+|||+|+++|.++++|+.+++++|||+||+||++++.|++++|+++
T Consensus 230 ~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t 309 (412)
T KOG1485|consen 230 LWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRT 309 (412)
T ss_pred hhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHH
Confidence 8899999999999999999998886 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCCCCHHHHHHHHHHHHcC-CCccccceEEEEEECCeEEEEEEEEeCCCCCHHHHHHhhhhhhhhh
Q 017001 303 VMENAVSLVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVGCSVPSLWLILKMIFILPIITTLF 376 (379)
Q Consensus 303 ~~e~~~~Llg~s~~~e~~~~I~~~i~~~-~~V~~V~~vr~~~~G~~~~Vev~I~l~~~~~l~e~~~i~~~~~~~~ 376 (379)
..+++..|+|+++|||+++++++.+.++ +.++.+|++++|++|..++||+||++|++|++.++|++-..+..-+
T Consensus 310 ~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~i 384 (412)
T KOG1485|consen 310 GLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKI 384 (412)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 7999999999999999999999999999999999999988776543
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-46 Score=364.84 Aligned_cols=261 Identities=24% Similarity=0.347 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHH
Q 017001 107 LQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVG 186 (379)
Q Consensus 107 ~~~~~~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~ 186 (379)
.++.+..+++.++++++|++++++|+++|+++||.||+||++||+.|++++++.+++.+.+++|+|++|||||+|+|+++
T Consensus 5 ~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~ 84 (304)
T COG0053 5 EERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLA 84 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Confidence 46677789999999999999999999999999999999999999999999999999988888887799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHhHHhhhhh
Q 017001 187 IIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFD 262 (379)
Q Consensus 187 ~li~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~----~~s~~l~a~a~~~~~D 262 (379)
+++.+++++++|++++++++.+++++.+.+ ...++++++++++++|.++++|.++ .+++.+.|++.|+++|
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~-----~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD 159 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVE-----PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSD 159 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHH
Confidence 999999999999999999999999977663 4567889999999999999999854 5688999999999999
Q ss_pred hhhhHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCccccceEEE
Q 017001 263 VVTNVVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRA 341 (379)
Q Consensus 263 ~l~n~~~lla~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~ 341 (379)
++++++++++.. +.++ |||+||++|++|+++|++.+++++++++..|+|+++||+..++|++++.+.|+|.++|++|+
T Consensus 160 ~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~ 238 (304)
T COG0053 160 VLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRT 238 (304)
T ss_pred HHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeeccee
Confidence 999997777666 6555 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEEEEEeCCCCCHHHHHHhhhhhh
Q 017001 342 YTFGVLYFVEVGCSVPSLWLILKMIFILPIIT 373 (379)
Q Consensus 342 ~~~G~~~~Vev~I~l~~~~~l~e~~~i~~~~~ 373 (379)
++.|+.+++++||++||+|+++|+|+|..-+.
T Consensus 239 R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie 270 (304)
T COG0053 239 RKSGSRIFIDVHIEVDPDLSLEEAHEIADEVE 270 (304)
T ss_pred eeeCCeEEEEEEEEECCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999876543
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=2.7e-45 Score=355.34 Aligned_cols=258 Identities=18% Similarity=0.166 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHH
Q 017001 112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA 191 (379)
Q Consensus 112 ~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~s 191 (379)
..+++.++++++|++++++|+++|+.+||+|++||++||+.|++++++++++.+.++|+++++|||||+|+|++++++.+
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999997777777779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHhHHhhhhhhhhhH
Q 017001 192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~----~~s~~l~a~a~~~~~D~l~n~ 267 (379)
++|++++++++++|++++++|++.+ ...++++++++++++|.++++++++ .+|+.+++++.|+++|+++++
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~~-----~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPMN-----DPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNG 162 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653 2345677888999999998887764 568899999999999999998
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCccccceEEEEEECCe
Q 017001 268 VGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL 347 (379)
Q Consensus 268 ~~lla~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G~~ 347 (379)
+++++.++..+.++|+||++++++++++++.|+++++++...|+|+++|++..++|++.+.++|+|.++|++|+|+.|++
T Consensus 163 ~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~ 242 (299)
T PRK09509 163 AILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPT 242 (299)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEeeCCe
Confidence 65554444333388999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHhhhhhhh
Q 017001 348 YFVEVGCSVPSLWLILKMIFILPIITT 374 (379)
Q Consensus 348 ~~Vev~I~l~~~~~l~e~~~i~~~~~~ 374 (379)
+++++||++|++++++|+|++..-+++
T Consensus 243 ~~v~v~i~v~~~~~~~e~h~i~~~ie~ 269 (299)
T PRK09509 243 RFIQLHLEMEDNLPLVQAHMIADQVEQ 269 (299)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988755544
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=3.2e-42 Score=335.46 Aligned_cols=246 Identities=17% Similarity=0.146 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHH
Q 017001 113 HERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAA 192 (379)
Q Consensus 113 ~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv 192 (379)
.+|.+++++++|++++++|+++|+.+||+|++||++||+.|++++++++++.+.++||++++|||||+|+|++++++.++
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999988878777799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh---hCCHHHHHhHHhhhhhhhhhHHH
Q 017001 193 IMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS---SGNKIVRAYAKDHYFDVVTNVVG 269 (379)
Q Consensus 193 ~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~---~~s~~l~a~a~~~~~D~l~n~~~ 269 (379)
+|++++++++++|++++++|.+.+ ..++++++++++++|.+++++.++ .++..+++.+.|+++|+++++++
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRPVA------GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc------chHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875532 235667778889999988777654 34678999999999999999988
Q ss_pred HHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHH-HcCCCccccceEEEEEECCe
Q 017001 270 LVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLV-IRHPEVKRIDTVRAYTFGVL 347 (379)
Q Consensus 270 lla~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i-~~~~~V~~V~~vr~~~~G~~ 347 (379)
+++++++.++ ++|+||++++++++++++.+++++++++..|++.++|++..+++++.+ .++|+|+++|++|+|+.|++
T Consensus 171 lv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~ 250 (312)
T PRK03557 171 IIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEK 250 (312)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCe
Confidence 8887777654 789999999999999999999999999999999888777789998876 56799999999999999999
Q ss_pred EEEEEEEEeCCCCCHHH
Q 017001 348 YFVEVGCSVPSLWLILK 364 (379)
Q Consensus 348 ~~Vev~I~l~~~~~l~e 364 (379)
+++++||+++++++..+
T Consensus 251 ~~v~~hv~v~~~~~~~~ 267 (312)
T PRK03557 251 PVMTLHVQVIPPHDHDA 267 (312)
T ss_pred EEEEEEEEECCCCCHHH
Confidence 99999999999876543
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=4e-41 Score=320.59 Aligned_cols=243 Identities=23% Similarity=0.294 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017001 127 LLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAV 206 (379)
Q Consensus 127 l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi 206 (379)
++++|+++|+.+||.+++||++||+.|++++++++++.+.++|+++++|||||+|+|++++++.+++|++.+++++++|+
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999997777777779999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhhhhhh
Q 017001 207 EKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWW 282 (379)
Q Consensus 207 ~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~----~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~~~~~ 282 (379)
+++++|++.+ ...++++++++++++|+++++++++ .+++.+++++.|+++|++++++++++..+..+.++|
T Consensus 82 ~~l~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPEI-----DGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCcc-----cchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876442 2356778899999999999999876 457889999999999999999777777666655889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCccccceEEEEEECC-eEEEEEEEEeCCCCC
Q 017001 283 IDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVGCSVPSLWL 361 (379)
Q Consensus 283 ~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G~-~~~Vev~I~l~~~~~ 361 (379)
+||++++++++++++.++++++++...|+|.++|++..+++++.+.++|+|.++|++|+|+.|+ ++++++||++|++++
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~ 236 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLD 236 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhhhhh
Q 017001 362 ILKMIFILPIITT 374 (379)
Q Consensus 362 l~e~~~i~~~~~~ 374 (379)
++|+|++..-+.+
T Consensus 237 ~~~ah~i~~~i~~ 249 (268)
T TIGR01297 237 LKQAHDIALEIER 249 (268)
T ss_pred hhHHHHHHHHHHH
Confidence 9999988755543
No 6
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-37 Score=292.20 Aligned_cols=250 Identities=17% Similarity=0.212 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHH
Q 017001 109 EQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGII 188 (379)
Q Consensus 109 ~~~~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~l 188 (379)
...+.+|.+++++.+|.+++++|+++|+.|||+||+||++|++.|+++.++++++.+.++|+.+.+|||||.|+|.++++
T Consensus 16 ~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~ 95 (296)
T COG1230 16 DNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAF 95 (296)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999997777777668899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhh--CCHHHHHhHHhhhhhhhhh
Q 017001 189 IFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS--GNKIVRAYAKDHYFDVVTN 266 (379)
Q Consensus 189 i~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~--~s~~l~a~a~~~~~D~l~n 266 (379)
+.+++++.+++++++|+++|+++|.+.+ ...|++++++++++|+++.+..++- ++.++|+...|..+|.+.|
T Consensus 96 ~nav~Li~~s~~I~~EAi~R~~~P~~i~------~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgs 169 (296)
T COG1230 96 LNALLLIVVSLLILWEAIQRLLAPPPIH------YSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGS 169 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC------ccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 2467889999999999998887765 3678999999999999999
Q ss_pred HHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCccccceEEEEEEC
Q 017001 267 VVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFG 345 (379)
Q Consensus 267 ~~~lla~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G 345 (379)
+++++++++..++ |.|+||+.+++++++++..++++++++...|++..|+....+++++.+.+.|+|.++|++|+|..+
T Consensus 170 v~vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~ 249 (296)
T COG1230 170 VGVIIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSIT 249 (296)
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCC
Confidence 9999999999887 789999999999999999999999999999998777677799999999988999999999999997
Q ss_pred C-eEEEEEEEEeCCCCCHHH
Q 017001 346 V-LYFVEVGCSVPSLWLILK 364 (379)
Q Consensus 346 ~-~~~Vev~I~l~~~~~l~e 364 (379)
+ .....+|+++++..+-.+
T Consensus 250 ~~~~~~t~Hv~v~~~~~~~~ 269 (296)
T COG1230 250 GGEHALTLHVVVDEVADADA 269 (296)
T ss_pred CCceeEEEEEEecCccchHH
Confidence 6 788999999995555443
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=2.1e-38 Score=303.92 Aligned_cols=254 Identities=24% Similarity=0.359 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHHHH
Q 017001 117 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMAT 196 (379)
Q Consensus 117 ~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~ 196 (379)
+++++++|++++++|+++|+.+||.++++|++|++.|+++.++.+++.+..+++++.+||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999777777777999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh----hC--CHHHHHhHHhhhhhhhhhHHHH
Q 017001 197 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SG--NKIVRAYAKDHYFDVVTNVVGL 270 (379)
Q Consensus 197 ~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~----~~--s~~l~a~a~~~~~D~l~n~~~l 270 (379)
+++.++.+++++++++.+.+. ..+++.++++++++|..++++.++ .+ ++.+++.+.+++.|++.+++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSP-----PGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSST-----TTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhcccccccchh-----hhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 999999999999999965532 223445588999999999888876 44 8889999999999999999777
Q ss_pred HHHHHHhhh-hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCccccceEEEEEECC-e
Q 017001 271 VAAVLGDSF-YW-WIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-L 347 (379)
Q Consensus 271 la~~l~~~~-~~-~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G~-~ 347 (379)
++.++.... +. |+||++++++++++++.+++.++++...|+|+++||+..+++++.+++.|+|.+++++|+|+.|+ +
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~ 235 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNK 235 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-E
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCc
Confidence 777766665 44 59999999999999999999999999999999988999999999999999999999999999999 9
Q ss_pred EEEEEEEEeCCCCCHHHHHHhhhhhhhh
Q 017001 348 YFVEVGCSVPSLWLILKMIFILPIITTL 375 (379)
Q Consensus 348 ~~Vev~I~l~~~~~l~e~~~i~~~~~~~ 375 (379)
+.+++|+++|++++++|++++..-+++.
T Consensus 236 ~~v~i~v~v~~~~~v~~~~~i~~~i~~~ 263 (284)
T PF01545_consen 236 YVVEIHVQVDPDMSVEEAHEIRERIEKR 263 (284)
T ss_dssp EEEEEEEEETTTSBHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988777664
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-25 Score=211.98 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHH
Q 017001 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (379)
Q Consensus 114 ~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (379)
.|-+...+.+|+.++.++++.+..|+|+.+++|+.|+++|+.+..+.+++....+++++.+||||+.|+|.+++++.+++
T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354)
T KOG1484|consen 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHH
Confidence 57788889999999999999999999999999999999999999999999888888877999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh-h----C--------------------
Q 017001 194 MATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS-S----G-------------------- 248 (379)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~-~----~-------------------- 248 (379)
+.+.++.++.|+++|+++|++.. ......+...+.++|++-.+..+. . +
T Consensus 114 lvl~a~fi~~Es~eRl~~ppei~------t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~ 187 (354)
T KOG1484|consen 114 LVLIAFFIFSESVERLFDPPEIH------TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLG 187 (354)
T ss_pred HHHHHHHHhHHHHHHhcCchhcC------CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccc
Confidence 99999999999999999995442 223346777778888755444322 0 0
Q ss_pred ----------------CHHHHHhHHhhhhhhhhhHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 017001 249 ----------------NKIVRAYAKDHYFDVVTNVVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLV 311 (379)
Q Consensus 249 ----------------s~~l~a~a~~~~~D~l~n~~~lla~~l~~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Ll 311 (379)
+..+.....|-..|.+.+++.+++.++...+ |.|.||+++++|++.|+.+.++++++....|+
T Consensus 188 ~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLL 267 (354)
T KOG1484|consen 188 VWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILL 267 (354)
T ss_pred ccccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0113355667788999999889988888866 88999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcC---CCccccceEEEEEECCe-EEEEEEEEe----CCCCCHHHHHHhhhhh
Q 017001 312 GQSAPPEILQKLTYLVIRH---PEVKRIDTVRAYTFGVL-YFVEVGCSV----PSLWLILKMIFILPII 372 (379)
Q Consensus 312 g~s~~~e~~~~I~~~i~~~---~~V~~V~~vr~~~~G~~-~~Vev~I~l----~~~~~l~e~~~i~~~~ 372 (379)
. +.||+..+++.+.++++ +||.++.+-|.|+.++. +...+|+.+ |++..+.+..+++...
T Consensus 268 q-~tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade~~vl~~V~~~~~~~ 335 (354)
T KOG1484|consen 268 Q-RTPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADEQSVLAHVTRKLEDA 335 (354)
T ss_pred h-cCChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcchhHHHHHHHHHHHhc
Confidence 5 67888888877777665 99999999999999973 555555555 5556677777766543
No 9
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.7e-25 Score=212.85 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHH
Q 017001 111 VQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIF 190 (379)
Q Consensus 111 ~~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 190 (379)
...+|.++++.++.+++.+.|+++|+.+||+|+++|+.|.+.|+.+-.+++++.+.++++.+.+..||+.|.|.+|+++.
T Consensus 69 ~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~S 148 (379)
T KOG1482|consen 69 RAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVS 148 (379)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHH
Confidence 33678999999999999999999999999999999999999999999999999887777777999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhh------C---------------C
Q 017001 191 AAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS------G---------------N 249 (379)
Q Consensus 191 sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~------~---------------s 249 (379)
-..++.....++++|++++++++.+- ....|+++..+++++|.++.+..... + |
T Consensus 149 v~~IW~~tgvLV~~Ai~Rl~s~~~ev-----~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n 223 (379)
T KOG1482|consen 149 VLLIWVVTGVLVYEAIQRLLSGDYEV-----NGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELN 223 (379)
T ss_pred HHHHHHhhhhhHHHHHhhhhcCceee-----cceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccc
Confidence 99999999999999999999998543 23467788899999999886664221 1 2
Q ss_pred HHHHHhHHhhhhhhhhhHHHHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHH
Q 017001 250 KIVRAYAKDHYFDVVTNVVGLVAAVLGDSF--YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLV 327 (379)
Q Consensus 250 ~~l~a~a~~~~~D~l~n~~~lla~~l~~~~--~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i 327 (379)
.++||-..|.+.|++.++++++++.+.++. |.+.||+..++.+++++.+-.+++|+.+..|+..++..-....+.+.+
T Consensus 224 ~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l 303 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGL 303 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHH
Confidence 679999999999999999989888888765 789999999999999999999999999999998776666699999999
Q ss_pred HcCCCccccceEEEEEECC-eEEEEEEEEeCCCCCHHHH
Q 017001 328 IRHPEVKRIDTVRAYTFGV-LYFVEVGCSVPSLWLILKM 365 (379)
Q Consensus 328 ~~~~~V~~V~~vr~~~~G~-~~~Vev~I~l~~~~~l~e~ 365 (379)
...++|+.||++|+|..+. +..+.+||..+++-.-+++
T Consensus 304 ~~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~~v 342 (379)
T KOG1482|consen 304 LSIEGVKAVHDLHIWSITVGKVALSVHLAIDSEADAEEV 342 (379)
T ss_pred hhhcceeEEEEEEEEEEecCceEEEEEEeecCCCCHHHH
Confidence 9999999999999999996 8889999999887665554
No 10
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=9.8e-24 Score=203.80 Aligned_cols=253 Identities=15% Similarity=0.181 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHH
Q 017001 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (379)
Q Consensus 115 ~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (379)
.-+..-+++.++++++|++.++.++|+|++||++|++.|+++.++++++.+.+++....+||||+.|.|.+|+++.++++
T Consensus 9 ~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl 88 (404)
T KOG1483|consen 9 LRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFL 88 (404)
T ss_pred cceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHH
Confidence 34555678899999999999999999999999999999999999999997766663459999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh----------------------------
Q 017001 195 ATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS---------------------------- 246 (379)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~---------------------------- 246 (379)
....+.++.|+++|++++.+.. .+...+.+.+++++.|.+-+.....
T Consensus 89 ~alc~~I~~EA~~R~I~p~~i~-----~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~ 163 (404)
T KOG1483|consen 89 TALCVSILIEAIERIIEPHHIE-----NPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHL 163 (404)
T ss_pred HHHHHHHHHHHHHhhcCCcccc-----CceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCC
Confidence 9999999999999999998764 2334556667777777644332100
Q ss_pred -----------h-------------------------------------------------CCHHHHHhHHhhhhhhhhh
Q 017001 247 -----------S-------------------------------------------------GNKIVRAYAKDHYFDVVTN 266 (379)
Q Consensus 247 -----------~-------------------------------------------------~s~~l~a~a~~~~~D~l~n 266 (379)
. ++-+++..+.+-..|.+.+
T Consensus 164 ~~~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~ 243 (404)
T KOG1483|consen 164 HSHAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGS 243 (404)
T ss_pred chhccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccc
Confidence 0 0001233344556688888
Q ss_pred HHHHHHHHHHhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCccccceEEEE
Q 017001 267 VVGLVAAVLGDSF----YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAY 342 (379)
Q Consensus 267 ~~~lla~~l~~~~----~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~~ 342 (379)
+++++++++.++. ..|+||+.+++++++++.+++++.+|+...|+...|..-..+++.+.+.++|||.+||++|+|
T Consensus 244 I~Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvW 323 (404)
T KOG1483|consen 244 IIVIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVW 323 (404)
T ss_pred eEEEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeee
Confidence 8888888877764 348999999999999999999999999999997666666699999999999999999999999
Q ss_pred EECC-eEEEEEEEEeC-CCCCHHHHHHhhhhh
Q 017001 343 TFGV-LYFVEVGCSVP-SLWLILKMIFILPII 372 (379)
Q Consensus 343 ~~G~-~~~Vev~I~l~-~~~~l~e~~~i~~~~ 372 (379)
.... .+...+||.++ |..-.+-|.+|..+|
T Consensus 324 qL~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~f 355 (404)
T KOG1483|consen 324 QLAGSRIIATIHIQIQNPKEYMKIAEKIRSYF 355 (404)
T ss_pred eeccceEEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 9864 88999999984 333334444444443
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.5e-23 Score=188.45 Aligned_cols=256 Identities=17% Similarity=0.113 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCccchHHhHHHHHHH
Q 017001 113 HERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTH-VAMKNINIYKYPIGKLRVQPVGIIIFA 191 (379)
Q Consensus 113 ~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~-~~~~~~~~~~~P~G~~R~E~l~~li~s 191 (379)
+++.+.+|++..++++.+.+++|+++||++++-|+++|+.|+....++++.. ...+++++.+||||+.-+||+...+.+
T Consensus 18 eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing 97 (314)
T COG3965 18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAING 97 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhcc
Confidence 4788999999999999999999999999999999999999999999988774 455466667999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHhHHhhhhhhhhhH
Q 017001 192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~----~~s~~l~a~a~~~~~D~l~n~ 267 (379)
.+++....+-++.|+..++++.... .+.++++..+++..+|..+|+..|| .+|+.+.++.+.|..|...+.
T Consensus 98 ~ll~ll~lyAlinAl~~l~dGGR~v-----~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~ 172 (314)
T COG3965 98 TLLALLCLYALINALGSLLDGGREV-----EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSA 172 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc-----cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999998874 3568889999999999999988766 347889999999999999988
Q ss_pred HHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHcCCCcccc--c
Q 017001 268 VGLVAAVLGDS--------FYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRI--D 337 (379)
Q Consensus 268 ~~lla~~l~~~--------~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~i~~~~~V~~V--~ 337 (379)
+..++-++++. +.+|+||+.-.+++++++....++++.+..+++.-+ |.|+.|++...+.+...=.+. +
T Consensus 173 al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt-P~el~q~ies~~~~~v~k~~f~~~ 251 (314)
T COG3965 173 ALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT-PNELQQSIESHAHEIVEKYGFPSY 251 (314)
T ss_pred HHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhcCchH
Confidence 66665555543 146999999999999999999999999999999765 558888888777665111122 3
Q ss_pred eEEEEEECCeEEEEEEEEeCCCCCHH---HHHHhhhhhhh
Q 017001 338 TVRAYTFGVLYFVEVGCSVPSLWLIL---KMIFILPIITT 374 (379)
Q Consensus 338 ~vr~~~~G~~~~Vev~I~l~~~~~l~---e~~~i~~~~~~ 374 (379)
++++-++|+..++|+|..+|++++-+ +-++|+--|-|
T Consensus 252 ~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~ 291 (314)
T COG3965 252 HVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQ 291 (314)
T ss_pred HHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHH
Confidence 34466899999999999999887654 45555544433
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.85 E-value=7.9e-21 Score=181.54 Aligned_cols=222 Identities=19% Similarity=0.134 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHH
Q 017001 111 VQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIF 190 (379)
Q Consensus 111 ~~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 190 (379)
+...|++-+++++|.+-+.+|+.+|+.|||.+++|+++||++|..+++++.++...+.+.+|..|||||..+.++.++|.
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 44568899999999999999999999999999999999999999999999999666666666999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH----Hh---------------hCCH
Q 017001 191 AAIMATLGFQV-LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYC----KS---------------SGNK 250 (379)
Q Consensus 191 sv~m~~~~~~i-l~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~----r~---------------~~s~ 250 (379)
++.++++|-.+ ++.+|..|.+|+|.+ .+.|++.+...+++......+.. ++ .++|
T Consensus 283 gvGIfc~G~GlSiyhGv~gLlhpePi~-----~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DP 357 (503)
T KOG2802|consen 283 GVGIFCMGCGLSIYHGVMGLLHPEPIE-----SLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDP 357 (503)
T ss_pred ccceeeecccchhhhccccccCCCCCc-----chHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCC
Confidence 99888876544 799999999999985 45677777777777766443332 11 1122
Q ss_pred HHHHhHHhhhhhhhhhH-HHHHHHHHH--hhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHH
Q 017001 251 IVRAYAKDHYFDVVTNV-VGLVAAVLG--DSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYL 326 (379)
Q Consensus 251 ~l~a~a~~~~~D~l~n~-~~lla~~l~--~~~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I~~~ 326 (379)
...+.. ..|...-. +++.++.++ .++ .|..|++|+|+|+.++...
T Consensus 358 s~nvVl---~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV---------------------------- 406 (503)
T KOG2802|consen 358 STNVVL---LEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV---------------------------- 406 (503)
T ss_pred cceEEE---ecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH----------------------------
Confidence 211111 11222222 233333333 233 8999999999999876543
Q ss_pred HHcCCCccccceEEEEEECC-eEEEEEEEEeCCCCCHHHHHHhhhhhhhh
Q 017001 327 VIRHPEVKRIDTVRAYTFGV-LYFVEVGCSVPSLWLILKMIFILPIITTL 375 (379)
Q Consensus 327 i~~~~~V~~V~~vr~~~~G~-~~~Vev~I~l~~~~~l~e~~~i~~~~~~~ 375 (379)
+.+++|++...+|+ ++....+|.+|+.+-.+..-+ ...+.++
T Consensus 407 ------e~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~-kqd~akm 449 (503)
T KOG2802|consen 407 ------ENDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLE-KQDFAKM 449 (503)
T ss_pred ------HHhhhhccceeeccceeEEEEEeccCchhhHHHHHh-HHHHHHH
Confidence 23479999999998 888999999999988776554 3333333
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.02 E-value=6e-05 Score=73.49 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHH
Q 017001 111 VQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIF 190 (379)
Q Consensus 111 ~~~~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 190 (379)
...-.+..+++++|..+.-.+.-.+-.+||.++.||+.|...|+++++..+++..... +|+..++++++++.
T Consensus 117 ~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I 188 (304)
T COG0053 117 LLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLI 188 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHH
Confidence 3446778889999999999999999999999999999999999999999998855333 57889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017001 191 AAIMATLGFQVLIEAVEKLVKDEPPK 216 (379)
Q Consensus 191 sv~m~~~~~~il~esi~~Li~~~~~~ 216 (379)
++.++..|+.++.+++..|++...++
T Consensus 189 ~~~Il~~~~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 189 SLYILKTGFRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCH
Confidence 99999999999999999999966554
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.90 E-value=9.6e-05 Score=70.25 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHH
Q 017001 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (379)
Q Consensus 114 ~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (379)
-....+++++|.++...+.-.+...+|.++.|++.|++.|+++++..+.+..... +|+..++++++++.+++
T Consensus 97 ~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~ 168 (268)
T TIGR01297 97 LIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLL 168 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHH
Confidence 3456678899999999999888999999999999999999999988887754443 45789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 017001 194 MATLGFQVLIEAVEKLVKDEPPK 216 (379)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~ 216 (379)
++..++.++.+++..|++..+++
T Consensus 169 i~~~~~~l~~~~~~~Ll~~~~~~ 191 (268)
T TIGR01297 169 ILYTAFRLLKESINVLLDAAPDE 191 (268)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999987643
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.81 E-value=0.00025 Score=68.93 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHH
Q 017001 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (379)
Q Consensus 114 ~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (379)
-....+++++|.++...+...+-.++|.++.||+.|+..|+++++..+.+..... +|+..++++++++.+++
T Consensus 118 l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~ 189 (299)
T PRK09509 118 IIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIY 189 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHH
Confidence 3456677888998888888888899999999999999999999988777754432 46778999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC
Q 017001 194 MATLGFQVLIEAVEKLVKDEPPK 216 (379)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~ 216 (379)
++..++.++.+++..|++..+++
T Consensus 190 il~~~~~i~~~~~~~Ll~~~~~~ 212 (299)
T PRK09509 190 ILYSALRMGYEAVQSLLDRALPD 212 (299)
T ss_pred HHHHHHHHHHHHHHHHhccCCCH
Confidence 99999999999999999976553
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=96.98 E-value=0.0071 Score=59.23 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHHHHH
Q 017001 118 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 197 (379)
Q Consensus 118 ~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~ 197 (379)
.+++++|++...... -+-..+|.++.|++.|...|+++++.++++...... .|+.-++|+++++.+++++..
T Consensus 129 ~~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~ 200 (312)
T PRK03557 129 VAGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRS 200 (312)
T ss_pred HHHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHH
Confidence 455666765543322 234468899999999999999999887776433321 233348999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 017001 198 GFQVLIEAVEKLVKDEPP 215 (379)
Q Consensus 198 ~~~il~esi~~Li~~~~~ 215 (379)
++.++.+++..|++..++
T Consensus 201 ~~~l~~~~~~~Lld~~p~ 218 (312)
T PRK03557 201 AWRLLKESVNELLEGAPV 218 (312)
T ss_pred HHHHHHHHHHHHHccCCC
Confidence 999999999999987665
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.13 Score=51.71 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHH
Q 017001 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (379)
Q Consensus 115 ~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (379)
+.+.+++.+..+.+.+-.+.+..++|-.+.|-|.|-..|++++.+++.+...+- |.+.-+.|+|+++.+..+
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~--------~~~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY--------YYNYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------hhhhcccchhhhhhheeh
Confidence 334455666777777778888999999999999999999999999998865543 223568899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 017001 195 ATLGFQVLIEAVEKLVKDEPP 215 (379)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~ 215 (379)
+..+..-..+++..|+....+
T Consensus 303 i~t~~~t~~~~i~~Lvg~~a~ 323 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGRSAP 323 (412)
T ss_pred hhhhhHHHHHHHHHHhCCCCC
Confidence 999999999999999987444
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=92.14 E-value=0.19 Score=47.97 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--hHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccch-HHhHHHHHHHHH
Q 017001 117 MKISNYANIVLLACKIFATIKSG--SIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLR-VQPVGIIIFAAI 193 (379)
Q Consensus 117 ~~isl~~n~~l~i~ki~a~~~s~--S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R-~E~l~~li~sv~ 193 (379)
..+++++|.++.....-.+-..+ |..+.+++.|+..|.+.++..+.+.....- .+... ++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~-------~~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYL-------GPWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSST-------T-STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHH-------HhcccccchhhhhHHHHH
Confidence 55677777777776666555566 999999999999999999877765332221 22333 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 017001 194 MATLGFQVLIEAVEKLVKDEPP 215 (379)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~ 215 (379)
++..+..++.+++..|+...++
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~~~ 203 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDASPD 203 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-SHH
T ss_pred Hhhhhhhchhhhhccccccccc
Confidence 9999999999999999988643
No 19
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=87.71 E-value=9.4 Score=37.18 Aligned_cols=72 Identities=21% Similarity=0.100 Sum_probs=61.9
Q ss_pred HHHHHhhCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 017001 241 WIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS--------FYWWIDPAGAILLAVYTITNWSETVMENAVSLVG 312 (379)
Q Consensus 241 ~~~~r~~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~--------~~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg 312 (379)
+..-...+|.++-|++.|..+|++..++++++..++-. .++-+..++|++=++.++..+.-+++|++..+..
T Consensus 39 ~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~ 118 (296)
T COG1230 39 IIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLA 118 (296)
T ss_pred HHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344567899999999999999999988888777643 2678999999999999999999999999999995
No 20
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=83.84 E-value=14 Score=29.12 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=34.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhhhH---HHHHHHHHHHHHHHHHH
Q 017001 259 HYFDVVTNVVGLVAAVLGDSFYWWIDPA---GAILLAVYTITNWSETV 303 (379)
Q Consensus 259 ~~~D~l~n~~~lla~~l~~~~~~~~Dpi---~aiiIa~~ii~~~~~~~ 303 (379)
...|.+.+.++++.+.+.....|-+||+ +-++.+...++-+++++
T Consensus 34 Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 34 RDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999998887776668889999 56666666666666554
No 21
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=80.72 E-value=34 Score=31.05 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHhHHhhhhhhhhhHHHHHH
Q 017001 194 MATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSG-NKIVRAYAKDHYFDVVTNVVGLVA 272 (379)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~-s~~l~a~a~~~~~D~l~n~~~lla 272 (379)
+++.|+..+..++..++...... ...+..+..++++-+....++.|.++.+ +.+.|.-......-...+.+.=++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~----~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQV----YGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc----hhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHH
Confidence 34456666677788888776432 1233344444455555556665554432 211111111111101111111111
Q ss_pred HHHHh-h----hhhhhhhHHHHHHHHHHHHHHH
Q 017001 273 AVLGD-S----FYWWIDPAGAILLAVYTITNWS 300 (379)
Q Consensus 273 ~~l~~-~----~~~~~Dpi~aiiIa~~ii~~~~ 300 (379)
..+.. + ..+-+||+.-.+++..++..=+
T Consensus 178 v~i~t~~lPtslN~~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 178 VMIATVFLPTSLNPQLPPIALTIIGAVILALRF 210 (226)
T ss_pred HHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHH
Confidence 11111 1 2568999998888887775433
No 22
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=76.83 E-value=66 Score=31.57 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=37.4
Q ss_pred hhhhhhhHHHHHHHHHHhhh---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 017001 260 YFDVVTNVVGLVAAVLGDSF---------YWWIDPAGAILLAVYTITNWSETVMENAVSLVG 312 (379)
Q Consensus 260 ~~D~l~n~~~lla~~l~~~~---------~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg 312 (379)
..++++..+|++-+++...+ .+++-++.++++++++.|.++.....+-.+++-
T Consensus 78 ~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~ 139 (356)
T COG4956 78 VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLR 139 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHH
Confidence 34556655555444443321 578999999999999999999988777776664
No 23
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=70.77 E-value=21 Score=29.50 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=41.1
Q ss_pred HHHHcccCCCCHH-----HHHHHHHHHHcCCCccccceEEEEEECCeEEEEEEEEe
Q 017001 306 NAVSLVGQSAPPE-----ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVGCSV 356 (379)
Q Consensus 306 ~~~~Llg~s~~~e-----~~~~I~~~i~~~~~V~~V~~vr~~~~G~~~~Vev~I~l 356 (379)
....|+|+..|++ ....|++.+..+|.|.+|++.-+-.-|+.+.+.++|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 4566888755544 45668888888999999999999999999988888765
No 24
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=68.27 E-value=56 Score=32.38 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhhh--------hhhhhhHHHHHHHHHHHHH
Q 017001 227 YSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSF--------YWWIDPAGAILLAVYTITN 298 (379)
Q Consensus 227 i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~~--------~~~~Dpi~aiiIa~~ii~~ 298 (379)
....++.+...++..+|+...++-.+.+++.+...|.....+++.+.++.-+- +..+..+.+.+=+++.+..
T Consensus 38 f~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~ 117 (354)
T KOG1484|consen 38 FLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLI 117 (354)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHH
Confidence 34556667777777888888888889999999999999999999888876431 3467777778888888888
Q ss_pred HHHHHHHHHHHccc
Q 017001 299 WSETVMENAVSLVG 312 (379)
Q Consensus 299 ~~~~~~e~~~~Llg 312 (379)
++.+..|++..|+.
T Consensus 118 a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 118 AFFIFSESVERLFD 131 (354)
T ss_pred HHHHhHHHHHHhcC
Confidence 88999999999985
No 25
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=66.14 E-value=1.1e+02 Score=27.98 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017001 231 IGATVVKLALWIYCKSS 247 (379)
Q Consensus 231 ~~s~~v~~~l~~~~r~~ 247 (379)
+++++.-.+-|++.||.
T Consensus 185 iig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 185 IIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333445555554
No 26
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=55.75 E-value=2.1e+02 Score=29.60 Aligned_cols=123 Identities=12% Similarity=0.181 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchH-HhHHHHHHHHHHHHHHHH
Q 017001 122 YANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRV-QPVGIIIFAAIMATLGFQ 200 (379)
Q Consensus 122 ~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~-E~l~~li~sv~m~~~~~~ 200 (379)
..-+++.++-+.+-+..||- .+|++|.+.+.- -...+|..++ .++-..+.-.+|.+..+.
T Consensus 23 ~~GilLl~a~~~Ali~ANsp--~~~~Y~~~~~~~-----------------~~~~~~~~~l~~sl~~wINDgLMaiFFf~ 83 (438)
T PRK14856 23 FGGIFLFLNAVLAMVVANSF--LKESYFALWHTP-----------------FGFQIGDFFIGFSLHNWIDDVLMALFFLM 83 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCC--cHHHHHHHHcCc-----------------cccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 34455555556666666763 355666554410 1111222222 256667777777777777
Q ss_pred HHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhH
Q 017001 201 VLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 201 il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~ 267 (379)
+..|==+++..++-... ......++.++.++++....|+..-. +.+..+..+.-.-+|+...+
T Consensus 84 VGLEIKrE~~~GeLs~~---rka~lPi~AAlGGmivPAlIY~~~n~-~~~~~~GWgIPmATDIAFAl 146 (438)
T PRK14856 84 IGLEIKRELLFGELSSF---KKASFPVIAALGGMIAPGLIYFFLNA-DTPSQHGFGIPMATDIAFAL 146 (438)
T ss_pred HHHHHHHHHhcccCCCh---HHHHHHHHHHHhccHHHHHHHhheec-CCCccCccccccHHHHHHHH
Confidence 77777788887765431 23445566777777877777776533 44556777777778887776
No 27
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=47.83 E-value=65 Score=23.59 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHH
Q 017001 186 GIIIFAAIMATLGFQV---LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKL 238 (379)
Q Consensus 186 ~~li~sv~m~~~~~~i---l~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~ 238 (379)
.-++.+++++..|.+. +.+.+.+.+++++++ ..+|.++..+++.++-+
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~-----~t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTD-----KTIWYLIGGAVAVIVGL 56 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCc-----hhHHHHHhHHHHHHHHH
Confidence 3455666666666654 566688888888774 34566666666655543
No 28
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=47.53 E-value=2.2e+02 Score=26.83 Aligned_cols=85 Identities=15% Similarity=0.010 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017001 225 WLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVM 304 (379)
Q Consensus 225 ~~i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~ 304 (379)
.++...+++.++...=-..-|+.+..+.--.-.|+..|.++- |+.-+++.+...-.-.+.+-++-.+|++....|+.+
T Consensus 37 ~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsF--gVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLAr 114 (234)
T COG1183 37 AALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVSF--GVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLAR 114 (234)
T ss_pred HHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHHh--hHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666677777666556777888887764 444444444432222688888889999999999998
Q ss_pred HHHHHcc
Q 017001 305 ENAVSLV 311 (379)
Q Consensus 305 e~~~~Ll 311 (379)
=|+..--
T Consensus 115 FN~~~~~ 121 (234)
T COG1183 115 FNVKTND 121 (234)
T ss_pred ccCcccC
Confidence 8776554
No 29
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=47.15 E-value=3.8e+02 Score=29.72 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=20.2
Q ss_pred CCCCCccchHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017001 173 YKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLV 210 (379)
Q Consensus 173 ~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi~~Li 210 (379)
.++++..+.+=.+..++.++++.+.++.+..-|+++++
T Consensus 144 ~~~~~~~eei~s~~il~~~~l~G~~~~~i~~~sl~~il 181 (764)
T TIGR02865 144 TKHLLTNEEIVSLIILIASVLTGLRGLSIWGLSLENII 181 (764)
T ss_pred ccCCCcHhHHHHHHHHHHHHHHccCCCEEEeeEHHHHH
Confidence 56666665544455555555555455555444555543
No 30
>PRK10263 DNA translocase FtsK; Provisional
Probab=46.72 E-value=5.6e+02 Score=30.36 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 017001 266 NVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWS 300 (379)
Q Consensus 266 n~~~lla~~l~~~~~~~~Dpi~aiiIa~~ii~~~~ 300 (379)
..+|+++.+++..+.+++-.+|+.++.++++..++
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIGL 175 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGL 175 (1355)
T ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34678777777766677776666665544444333
No 31
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=41.25 E-value=3.8e+02 Score=27.22 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchH-HhHHHHHHHHHHHHHHHHH
Q 017001 123 ANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRV-QPVGIIIFAAIMATLGFQV 201 (379)
Q Consensus 123 ~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~-E~l~~li~sv~m~~~~~~i 201 (379)
..+++.++-+.+-+..||. .+|++|.+.+.- -...+|..++ .++--.+.-.+|.+..+.+
T Consensus 15 ~gilLl~a~v~Ali~ANsp--~~~~Y~~~~~~~-----------------~~~~~~~~~l~~sl~~wiNDgLMaiFFf~v 75 (389)
T PRK09560 15 GGILLMAAAALAMIVANSP--LSEGYFSFLHTP-----------------VAIQIGAFSIGKSLLHWINDGLMAVFFLLV 75 (389)
T ss_pred HHHHHHHHHHHHHHHHhCC--cHHHHHHHHcCc-----------------ceeeccccccCCCHHHHHHHHHHHHHHHHH
Confidence 3344555555566666664 455666654410 0111121222 2556667777777777777
Q ss_pred HHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHhHHhhhhhhhhhH
Q 017001 202 LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNK-IVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 202 l~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~-~l~a~a~~~~~D~l~n~ 267 (379)
..|==+++..++-... ......++.++.++++....|...-. +++ ..+..+.-.-+|+...+
T Consensus 76 GLEiKrE~~~GeLs~~---r~a~lPi~AAlGGmivPAlIy~~~n~-g~~~~~~GWgIPmATDIAFAl 138 (389)
T PRK09560 76 GLEIKRELLEGQLSSW---QQRILPAIAAVGGMVVPALIYAAFNY-NNPETLRGWAIPAATDIAFAL 138 (389)
T ss_pred HHHHHHHHhcCCCCCh---HHHHHHHHHHHhchHHHHHHHheeec-CCCcccCccccccHHHHHHHH
Confidence 7777778877765431 33445566777777887777776533 333 35667777778887776
No 32
>PHA02975 hypothetical protein; Provisional
Probab=40.90 E-value=1.6e+02 Score=22.26 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017001 183 QPVGIIIFAAIMATL--GFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCK 245 (379)
Q Consensus 183 E~l~~li~sv~m~~~--~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r 245 (379)
|-+.+-++|++|-.. -+.=..+-++..++.+..+.-......+.++..+..+++-+.+++|.+
T Consensus 2 dKLYaaiFGvFmsS~DdDF~nFI~vVksVLtdk~~~~~~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 2 EKLFTGTYGVFLESNDSDFEDFIDTIMHVLTGKKEPKKKSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHcCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667666553 244567788888887643322111122233333333333345555554
No 33
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.07 E-value=4.1e+02 Score=28.00 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=28.2
Q ss_pred ccccccccccchHHH--hhcchhhhhcCCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHhhHHhhhh
Q 017001 30 SLSRRNSVNALRHEF--VSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEEVDV 95 (379)
Q Consensus 30 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fy~~q~~~i~~~~~~~~ 95 (379)
.++|+...+..+.+| ...|-+++.-.++.. |++.-.|.-.+..++|..+-...+++=+++++
T Consensus 77 ~ls~~~eyg~~~~~f~kI~~L~~~Wgy~~a~A----c~~iA~k~~~~~l~dfL~Rla~ai~sGe~~~e 140 (527)
T COG1955 77 ILSRKEEYGPLRKEFRKIYNLVDKWGYSLAEA----CRFIAKKTPSEILADFLDRLAYALDSGEDLKE 140 (527)
T ss_pred HhcchhhhhhHHHHHHHHHHHHHHhCcchHHH----HHHHHhhCcHHHHHHHHHHHHHhhhcCCcHHH
Confidence 344556666666665 333444433222111 22222333345556676666655554333333
No 34
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=38.61 E-value=3.9e+02 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 017001 190 FAAIMATLGFQVLIEAVEKLVK 211 (379)
Q Consensus 190 ~sv~m~~~~~~il~esi~~Li~ 211 (379)
++..|.+.|+........+...
T Consensus 14 f~~~mG~~gL~~~~~~~~~~~~ 35 (324)
T PRK10764 14 FGIVLGLIGLGFAWRYAAQLWP 35 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999888876655443
No 35
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=38.55 E-value=2.5e+02 Score=23.94 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHH---HHhHHHHHHHHHHHHHHHHH
Q 017001 117 MKISNYANIVLLACKIFATIKSGSIAI---AASTLDSLLDLMAGGILWFT 163 (379)
Q Consensus 117 ~~isl~~n~~l~i~ki~a~~~s~S~aL---~Adal~sl~D~~s~~i~l~~ 163 (379)
-.+++++|+++.++-.+++....+... ...+..-++.++.+++++++
T Consensus 77 ~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 77 RQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 346778888888777666544333332 34455555555555554443
No 36
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.35 E-value=1.5e+02 Score=21.97 Aligned_cols=56 Identities=16% Similarity=0.050 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHcCCCccccceEEEEEECCeEEEEEEEEeCCCCCHHHHHHhhhhhh
Q 017001 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVGCSVPSLWLILKMIFILPIIT 373 (379)
Q Consensus 316 ~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G~~~~Vev~I~l~~~~~l~e~~~i~~~~~ 373 (379)
.|....++.+.+.++. .++.+++....+..+...+.+.+|++.++.+..+-+.-+-
T Consensus 9 rpGiv~~vt~~la~~~--~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 9 RPGLTSALTEVLAAHG--VRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred CCCHHHHHHHHHHHCC--CCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5678899999998874 5777777777778888888888999888877777665543
No 37
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=38.25 E-value=43 Score=26.71 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=20.0
Q ss_pred EEEEEEEEeCCCCCHHHHHHhh
Q 017001 348 YFVEVGCSVPSLWLILKMIFIL 369 (379)
Q Consensus 348 ~~Vev~I~l~~~~~l~e~~~i~ 369 (379)
+.|++++.+|++|+.++++++.
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~ 23 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIK 23 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHH
Confidence 6799999999999999998874
No 38
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=35.65 E-value=1.7e+02 Score=22.03 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=20.7
Q ss_pred CCCCCCccchHHhHHHHHHHHHHHHHHHHH
Q 017001 172 IYKYPIGKLRVQPVGIIIFAAIMATLGFQV 201 (379)
Q Consensus 172 ~~~~P~G~~R~E~l~~li~sv~m~~~~~~i 201 (379)
..++..+..++|.+..++-++++++.++--
T Consensus 52 ~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 52 PNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp S--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 357777888899999999999888877643
No 39
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=34.95 E-value=1.9e+02 Score=27.90 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=16.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 017001 280 YWWIDPAGAILLAVYTITNWSE 301 (379)
Q Consensus 280 ~~~~Dpi~aiiIa~~ii~~~~~ 301 (379)
.||++.+..++.++++.+.++.
T Consensus 106 lw~~~~~l~~~~~~~~~~~~~~ 127 (330)
T PF03595_consen 106 LWWIGVILHLVLSVIFVFRWFR 127 (330)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHHHHhhhheehhc
Confidence 4788888888888887776554
No 40
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=34.36 E-value=4.3e+02 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=15.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 017001 280 YWWIDPAGAILLAVYTITNWSE 301 (379)
Q Consensus 280 ~~~~Dpi~aiiIa~~ii~~~~~ 301 (379)
.||++.+..++.++++.+.++.
T Consensus 100 lw~~~~~l~l~~~~~~~~~~~~ 121 (320)
T TIGR00816 100 LWYIGAIGQLLFSVIVPFYLFK 121 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888777777766665543
No 41
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=33.64 E-value=5.1e+02 Score=26.66 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHH-hHHHHHHHHHHHHHHHH
Q 017001 122 YANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQ-PVGIIIFAAIMATLGFQ 200 (379)
Q Consensus 122 ~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E-~l~~li~sv~m~~~~~~ 200 (379)
...+++.++-+.+-+.+||. .++.+|.+.+.- -...+|...++ ++--.+.-.+|.+..+.
T Consensus 18 ~~gilLl~a~~~Ali~ANSp--~~~~Y~~~~~~~-----------------~~~~~~~~~l~~sl~~wINDgLMaiFFf~ 78 (423)
T PRK14855 18 FAGLLLVGTAVAAFIWANSP--WREGYFTLQHTH-----------------LALSLGGWSLDLSLEHWVNDGLMAVFFLL 78 (423)
T ss_pred HHHHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-----------------cccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 34455556666666777763 455566554410 11222222222 56666777777777777
Q ss_pred HHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhH
Q 017001 201 VLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 201 il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~ 267 (379)
+..|==+++..++-... ......++.++-++++....|+..-. +.+.....+.-.-+|+...+
T Consensus 79 VGLEIKrE~l~GeLs~~---r~a~lPiiAAlGGmivPAlIy~~~n~-~~~~~~GWgIPmATDIAFAl 141 (423)
T PRK14855 79 VGLEIKRELLIGELSSP---RQAALAVVAALGGMLVPAALYTALNA-GGPGASGWGVPMATDIAFAL 141 (423)
T ss_pred HHHHHHHHHHcccCCCh---HHHHHHHHHHHhchHHHHHHHheeec-CCCccCccccccHHHHHHHH
Confidence 77777788887765431 23445566777777887777776532 44446666777777877765
No 42
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=33.03 E-value=2.4e+02 Score=22.11 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCccccceEEEEEECCeEEEEEEEEeCCCCC
Q 017001 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVGCSVPSLWL 361 (379)
Q Consensus 320 ~~~I~~~i~~~~~V~~V~~vr~~~~G~~~~Vev~I~l~~~~~ 361 (379)
-++|.+++.++|++..-..+.+.+-|..=.+.+.|+..+..+
T Consensus 6 P~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~ 47 (96)
T PF14535_consen 6 PSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFS 47 (96)
T ss_dssp HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCC
T ss_pred HHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccC
Confidence 467888999999998788999999998778999999988774
No 43
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=31.22 E-value=1.7e+02 Score=21.88 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHcCCCccccceEEEEEECCeEEEEEEEEeCCCCCHHHHHHhhhh
Q 017001 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVGCSVPSLWLILKMIFILPI 371 (379)
Q Consensus 316 ~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G~~~~Vev~I~l~~~~~l~e~~~i~~~ 371 (379)
.|.....+...+.++. .++.+++....|..+...+.+..+++ +..+..+-++-
T Consensus 12 rpGiv~~v~~~l~~~g--~ni~d~~~~~~~~~f~~~~~v~~~~~-~~~~l~~~L~~ 64 (76)
T PF13740_consen 12 RPGIVAAVTGVLAEHG--CNIEDSRQAVLGGRFTLIMLVSIPED-SLERLESALEE 64 (76)
T ss_dssp -TTHHHHHHHHHHCTT---EEEEEEEEEETTEEEEEEEEEESHH-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCC--CcEEEEEEEEEcCeEEEEEEEEeCcc-cHHHHHHHHHH
Confidence 5678889999998885 68899999999999999999999965 55555544443
No 44
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=31.10 E-value=1.9e+02 Score=29.16 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=49.4
Q ss_pred HhhCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhh-------h-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 017001 245 KSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS-------F-YWWIDPAGAILLAVYTITNWSETVMENAVSLVG 312 (379)
Q Consensus 245 r~~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~-------~-~~~~Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg 312 (379)
++.++-++.++|.|-..|+..-..++.+..+..+ + |.=+|.+||++-...|-.....++++++..++-
T Consensus 94 ~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s 169 (379)
T KOG1482|consen 94 YKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLS 169 (379)
T ss_pred eeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhc
Confidence 3455777899999999999888878877766643 1 445777777765555555666778888888774
No 45
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=30.91 E-value=3.6e+02 Score=23.45 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017001 225 WLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVM 304 (379)
Q Consensus 225 ~~i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~~~~~~Dpi~aiiIa~~ii~~~~~~~~ 304 (379)
++.+...++.+....=-..-|+.+..+-.-...|+..|.++-. ++-+++.+.. ....+.+.++..++++...+|+.+
T Consensus 22 ~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vsfg--vaPa~l~~~~-~~~~~~~~~~~~~~~l~~a~RLAr 98 (151)
T TIGR00473 22 RACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVSFG--VAPAALAYSI-GNFQTIGILVAALFFLCGILRLAR 98 (151)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHHHH--HHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666655566666665555555677888877543 3333333322 112334445556788899999999
Q ss_pred HHHH
Q 017001 305 ENAV 308 (379)
Q Consensus 305 e~~~ 308 (379)
-|..
T Consensus 99 FN~~ 102 (151)
T TIGR00473 99 FNVL 102 (151)
T ss_pred hccc
Confidence 8765
No 46
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=30.19 E-value=5e+02 Score=25.04 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHhHHhhhhhhhhhHHHHHHHHHHhh----h-hhhhhhHH
Q 017001 225 WLYSIMIGATVVKLALWIYCKSSG-----NKIVRAYAKDHYFDVVTNVVGLVAAVLGDS----F-YWWIDPAG 287 (379)
Q Consensus 225 ~~i~i~~~s~~v~~~l~~~~r~~~-----s~~l~a~a~~~~~D~l~n~~~lla~~l~~~----~-~~~~Dpi~ 287 (379)
+...+..++.++....|...|+.+ ++.=.....-|..|..++.+|+= .+|+. . ...+|..|
T Consensus 145 ~~~~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGid--~lGy~E~Hvl~~~lid~~G 215 (273)
T PF01889_consen 145 VLLIVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGID--FLGYWEQHVLPRFLIDLTG 215 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhee--ecCccCCcchHHHHHHHhC
Confidence 334455556666666777666632 11112223347789988886653 23432 1 33566666
No 47
>PRK00907 hypothetical protein; Provisional
Probab=28.48 E-value=1.1e+02 Score=24.49 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=40.4
Q ss_pred cccCCCCHHHHHHHHHHHHcC-CCccccceEEEE--EECCeEEEEEEEEeCCCCCHHHHHHhh
Q 017001 310 LVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAY--TFGVLYFVEVGCSVPSLWLILKMIFIL 369 (379)
Q Consensus 310 Llg~s~~~e~~~~I~~~i~~~-~~V~~V~~vr~~--~~G~~~~Vev~I~l~~~~~l~e~~~i~ 369 (379)
.+|. +.+++.+.|..++.+| |+. +-.++..+ +-|.+.-+.+.|.+...-.++..++-+
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~~-~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L 82 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVEL-LQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQAL 82 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCCC-CcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHH
Confidence 4564 6789999999999998 653 33345444 445667788888888776666665544
No 48
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=27.60 E-value=6.1e+02 Score=25.62 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHhHHhhhhh
Q 017001 184 PVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNK-IVRAYAKDHYFD 262 (379)
Q Consensus 184 ~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~-~l~a~a~~~~~D 262 (379)
++--.++-.+|.+..+.+..|==+++..++-... ......++.++-+.++....|...-. +++ ..+..+.-.-+|
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~---~~a~lP~~aA~GGm~vPa~iy~~~n~-~~~~~~~GW~IP~ATD 126 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSL---RQAIFPVIAAIGGMIAPALIYLAFNA-NDPITREGWAIPAATD 126 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHhchHHHHHHHhheec-CCCcccCccccccHHH
Confidence 5556667777777777777777777877765431 33445566777777777777766533 333 367777777788
Q ss_pred hhhhH
Q 017001 263 VVTNV 267 (379)
Q Consensus 263 ~l~n~ 267 (379)
+....
T Consensus 127 iAFal 131 (373)
T TIGR00773 127 IAFAL 131 (373)
T ss_pred HHHHH
Confidence 87776
No 49
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=27.46 E-value=42 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.2
Q ss_pred HcccCCCCHHHHHHHHHHHHcCCCccccce
Q 017001 309 SLVGQSAPPEILQKLTYLVIRHPEVKRIDT 338 (379)
Q Consensus 309 ~Llg~s~~~e~~~~I~~~i~~~~~V~~V~~ 338 (379)
.|.|..+.++..+++..++.++++|.+|++
T Consensus 29 ~L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 29 TLSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 467887888999999999999999998875
No 50
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=26.71 E-value=87 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.3
Q ss_pred eEEEEEEEEeCCCCCHHHHHHhh
Q 017001 347 LYFVEVGCSVPSLWLILKMIFIL 369 (379)
Q Consensus 347 ~~~Vev~I~l~~~~~l~e~~~i~ 369 (379)
.+.|++++.+|++|+.+++.++.
T Consensus 2 lflv~m~v~~P~~~~~~~~~~~~ 24 (91)
T PF02426_consen 2 LFLVRMTVNVPPDMPPEEVDRLK 24 (91)
T ss_pred eEEEEEEeeCCCCCCHHHHHHHH
Confidence 36799999999999999988774
No 51
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=26.55 E-value=6.9e+02 Score=25.38 Aligned_cols=102 Identities=21% Similarity=0.296 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHhHHhhhhh
Q 017001 184 PVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNK-IVRAYAKDHYFD 262 (379)
Q Consensus 184 ~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~-~l~a~a~~~~~D 262 (379)
++--.+.-.+|.+..+.+..|==+++..++-... ......++.++-++++....|+..-. +++ ..+..+.-.-+|
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~---r~a~lPi~AAlGGmivPAliy~~~n~-~~~~~~~GWaIP~ATD 133 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASR---RQAALPVIAAIGGMLVPALIYLLFNY-ADPVTREGWAIPAATD 133 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCCh---HHHHHHHHHHHhchHHHHHHHhheec-CCCcccCccccccHHH
Confidence 4555666677777777777777778877765431 34445566777777887777776533 333 367777778888
Q ss_pred hhhhHHHHHHHHHHhhh----------hhhhhhHHHHHH
Q 017001 263 VVTNVVGLVAAVLGDSF----------YWWIDPAGAILL 291 (379)
Q Consensus 263 ~l~n~~~lla~~l~~~~----------~~~~Dpi~aiiI 291 (379)
+.... +++ +++|... ...+|-++|+++
T Consensus 134 IAFal-gvl-allG~rvP~~LrvFLlaLAIvDDlgAI~V 170 (388)
T PRK09561 134 IAFAL-GVL-ALLGSRVPVALKIFLLALAIIDDLGAIVI 170 (388)
T ss_pred HHHHH-HHH-HHhcCCCCHHHHHHHHHHHHHHHhhhHhh
Confidence 88776 443 4444321 235666666543
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=26.24 E-value=4.5e+02 Score=23.11 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=7.0
Q ss_pred hHHHhhcchhhhh
Q 017001 41 RHEFVSKLPEKVL 53 (379)
Q Consensus 41 ~~~~~~~~~~~~~ 53 (379)
+.||++.|-...+
T Consensus 3 k~efL~~L~~~L~ 15 (181)
T PF08006_consen 3 KNEFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666644433
No 53
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=26.03 E-value=60 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 017001 280 YWWIDPAGAILLAVYTIT 297 (379)
Q Consensus 280 ~~~~Dpi~aiiIa~~ii~ 297 (379)
..++||+.|+++++.-.+
T Consensus 4 sr~lDP~~av~iG~~ayy 21 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYY 21 (47)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 578999999999886554
No 54
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=24.94 E-value=3.4e+02 Score=21.30 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=9.4
Q ss_pred HHHHHHHhccCCCCCCCC
Q 017001 160 LWFTHVAMKNINIYKYPI 177 (379)
Q Consensus 160 ~l~~~~~~~~~~~~~~P~ 177 (379)
...+...+.+.+..+||+
T Consensus 87 ~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 87 SIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHCCCeeecCe
Confidence 333433334444578886
No 55
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.88 E-value=3.9e+02 Score=21.86 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHH
Q 017001 284 DPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKL 323 (379)
Q Consensus 284 Dpi~aiiIa~~ii~~~~~~~~e~~~~Llg~s~~~e~~~~I 323 (379)
.|+...++..++.....+ +.||...+ |...|+-..+.+
T Consensus 74 ~~~~~~~~~~~i~~E~~S-I~EN~~~~-G~~iP~~l~~~l 111 (118)
T PF05105_consen 74 LPFRTLVIIFYILNELIS-ILENLAEM-GVPIPKWLKKFL 111 (118)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHh-CCCchHHHHHHH
Confidence 466667888888888888 55999886 765554333333
No 56
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=24.67 E-value=7.8e+02 Score=25.32 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchH-HhHHHHHHHHHHHHHHH
Q 017001 121 NYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRV-QPVGIIIFAAIMATLGF 199 (379)
Q Consensus 121 l~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~-E~l~~li~sv~m~~~~~ 199 (379)
...-++|.++-+.+-+..||. .+|++|.+.+.- -...+|..++ .++--.++-.+|.+..+
T Consensus 16 ~~~gilLl~a~~~Ali~ANs~--~~~~Y~~~~~~~-----------------~~~~~~~~~~~~~l~~wiNDgLMaiFFf 76 (423)
T PRK14853 16 TVGGALLLVAAVAALIWANSP--WGDSYFALRDFK-----------------LGPEPGGLHLSLSLGTWAADGLLAIFFF 76 (423)
T ss_pred hHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHcCc-----------------cccccccccCCCCHHHHHHHhhHHHHHH
Confidence 344456666666666777774 466777665410 0111111111 25555667777777777
Q ss_pred HHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhH
Q 017001 200 QVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 200 ~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~ 267 (379)
.+..|-=+++..++-... ......++.++.++++....|+..-..+....+..+.-.-+|+...+
T Consensus 77 ~vGLEiKrE~~~GeL~~~---~~a~lP~~aAlGGm~vPaliy~~~n~~~~~~~~GW~Ip~ATDIAFal 141 (423)
T PRK14853 77 VVGLELKREFVAGDLRDP---SRAALPVAAALGGMIVPALIYVAVNLAGGGALRGWAIPTATDIAFAL 141 (423)
T ss_pred HHHHHHhHHHhccchhhH---HHHHHHHHHHHHhHHHHHHHHHHHhCCchhhhhhhhhhhhhHHHHHH
Confidence 777777777776654321 23344456667777777777776533233335666666666666554
No 57
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=24.59 E-value=7.5e+02 Score=25.10 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchH-HhHHHHHHHHHHHHHHHHHH
Q 017001 124 NIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRV-QPVGIIIFAAIMATLGFQVL 202 (379)
Q Consensus 124 n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~-E~l~~li~sv~m~~~~~~il 202 (379)
-+++.++-+.+-+.+||. .+|++|.+.+.-.. ...|..++ .++--.+.-.+|.+..+.+.
T Consensus 13 gilLl~at~~Ali~ANsp--~~~~Y~~~~~~~~~-----------------~~~~~~~l~~~l~~WiNDgLMaiFFf~vG 73 (383)
T PRK14854 13 GLILFSAALLAIVVNNSP--LASYYAMLETINVK-----------------LGIENLVIDKNLMHWINDGLMAIYFLYIG 73 (383)
T ss_pred HHHHHHHHHHHHHHHcCc--hHHHHHHHHhccee-----------------eecccccCCCcHHHHHHhhHHHHHHHHHH
Confidence 355566666677788875 67777777652100 00111111 14444556666666666666
Q ss_pred HHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhH
Q 017001 203 IEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNV 267 (379)
Q Consensus 203 ~esi~~Li~~~~~~~~~~~~~~~~i~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~ 267 (379)
.|==+++..++-... ......++.++.++++....|...-. +....+..+.-.-+|+....
T Consensus 74 LEiKrE~~~GeLs~~---r~a~lP~~AAlGGmivPAlIy~~~n~-~~~~~~GW~IP~ATDIAFAl 134 (383)
T PRK14854 74 LEIKREIIVGTLSKP---SNIITPAIAAFAGLAMPSLIYLSINH-DIKVINGWAIPSATDIAFTL 134 (383)
T ss_pred HHHHHHHhcCCCCCh---HHHHHHHHHHHhchHHHHHHHHhhcc-CCcccCccccccHHHHHHHH
Confidence 666677777765431 23445566777777888777776533 33336677777777887776
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.22 E-value=2.9e+02 Score=20.18 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHcCCCccccceEEEE--EECCeEEEEEEEEeCCC-CCHHHHHHhhhhhh
Q 017001 316 PPEILQKLTYLVIRHPEVKRIDTVRAY--TFGVLYFVEVGCSVPSL-WLILKMIFILPIIT 373 (379)
Q Consensus 316 ~~e~~~~I~~~i~~~~~V~~V~~vr~~--~~G~~~~Vev~I~l~~~-~~l~e~~~i~~~~~ 373 (379)
.|..+.+|.+.+.++. .+|.+++.. +.+..+++.+.+.+|+. .+..+..+-+.-+-
T Consensus 9 ~~Giv~~it~~l~~~g--~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 9 RPGIVAAVSGFLAEHG--GNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CCCHHHHHHHHHHHcC--CCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5678999999999883 344455444 55667888999999975 77777776655544
No 59
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=24.12 E-value=3e+02 Score=20.27 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHcCCCccccceEEEEEEC------CeEEEEEEEEeCCCCCHHHHHHhhhh
Q 017001 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFG------VLYFVEVGCSVPSLWLILKMIFILPI 371 (379)
Q Consensus 316 ~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G------~~~~Vev~I~l~~~~~l~e~~~i~~~ 371 (379)
.|..+.+|...+.++. .+|.+++....+ ..+...+.+.+|++.++.+..+-+.-
T Consensus 9 ~~Giv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~ 68 (81)
T cd04869 9 RPGIVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEE 68 (81)
T ss_pred CCCHHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHH
Confidence 5677889999998873 466677766665 56778888888887777766654443
No 60
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.83 E-value=1.1e+02 Score=21.64 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=18.6
Q ss_pred CCCCccchHHhHHHHHHHHHHHHHHHHHH
Q 017001 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVL 202 (379)
Q Consensus 174 ~~P~G~~R~E~l~~li~sv~m~~~~~~il 202 (379)
.|-|-|+.+. +++++++.+++++|+.++
T Consensus 6 pF~YDy~tLr-igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 6 PFYYDYETLR-IGGLIFAGVLFILGILII 33 (50)
T ss_dssp GGGGCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHhh-ccchHHHHHHHHHHHHHH
Confidence 4445555443 567888888888887654
No 61
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=23.80 E-value=5.5e+02 Score=23.27 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccch--h---HHHHHHH
Q 017001 155 MAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTV--Q---LEWLYSI 229 (379)
Q Consensus 155 ~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~--~---~~~~i~i 229 (379)
++.+.++++..+.+|.+ .++-+.=.++.++++++=++.|..--...+.+.+++....+.... . ..+.++.
T Consensus 80 lS~ip~~~G~~s~~rN~-----i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~Y~f 154 (186)
T PF07086_consen 80 LSLIPSLLGLLSLRRNN-----ISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRHGKAYRFIFGFSAVPMGVLWYIF 154 (186)
T ss_pred HHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeeehhhhHHHHHHHH
Confidence 34444555555555544 566666677888887765555544433334444444333222211 1 1234455
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017001 230 MIGATVVKLALWIYCKS 246 (379)
Q Consensus 230 ~~~s~~v~~~l~~~~r~ 246 (379)
.++++-+..+...|+++
T Consensus 155 ~~ia~QvH~f~lYf~~k 171 (186)
T PF07086_consen 155 IVIAVQVHGFSLYFSKK 171 (186)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666556555
No 62
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=23.32 E-value=4.1e+02 Score=25.34 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHhHHHHHHHHH
Q 017001 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (379)
Q Consensus 114 ~~a~~isl~~n~~l~i~ki~a~~~s~S~aL~Adal~sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (379)
.++++...+..+.-.+.-+++++..+... .-.++.++.+.++.+++.+..-.-+.- +++| |..+.+....+..++.
T Consensus 180 ~~~l~~~~lsg~~~~lgavig~~~~~~~~--~~~l~~~la~aaG~mv~v~~~eliPea-~~~~-~~~~~~~~~~~~~G~~ 255 (266)
T COG0428 180 LKALLVAVLSGLAEPLGAVIGAYLLGISS--PLVLPFALAFAAGAMVYVVVDELLPEA-KRHG-GGSEKLATAGLFAGFL 255 (266)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhch--HHHHHHHHHHHhhcchhhhHHHHhhHH-HhcC-CCchHHHHHHHHHHHH
Confidence 45555555555555555555444444433 455666677777777766643333322 3444 3334444444444444
Q ss_pred HHH
Q 017001 194 MAT 196 (379)
Q Consensus 194 m~~ 196 (379)
++.
T Consensus 256 ~~~ 258 (266)
T COG0428 256 VMA 258 (266)
T ss_pred HHH
Confidence 433
No 63
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=22.57 E-value=1.9e+02 Score=23.04 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred cccCCCCHHHHHHHHHHHHcC-CCccccceEEEEEE--CCeEEEEEEEEeCCCCCHHHHHH
Q 017001 310 LVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTF--GVLYFVEVGCSVPSLWLILKMIF 367 (379)
Q Consensus 310 Llg~s~~~e~~~~I~~~i~~~-~~V~~V~~vr~~~~--G~~~~Vev~I~l~~~~~l~e~~~ 367 (379)
.+| .+.|++.+++.+.++++ |+ .....+-...+ |...-|.+.|....-..++-+++
T Consensus 20 VmG-~a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~ 78 (90)
T COG2921 20 VMG-AAGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYR 78 (90)
T ss_pred ehc-ccchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHH
Confidence 345 57899999999999999 65 34444533443 45566888887655444444443
No 64
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.31 E-value=2.2e+02 Score=21.74 Aligned_cols=57 Identities=5% Similarity=-0.059 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHcCCCccccceEEEEEECCeEEEEEEEEeCC-CCCHHHHHHhhhhhhh
Q 017001 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVGCSVPS-LWLILKMIFILPIITT 374 (379)
Q Consensus 316 ~~e~~~~I~~~i~~~~~V~~V~~vr~~~~G~~~~Vev~I~l~~-~~~l~e~~~i~~~~~~ 374 (379)
.|....+|...+.++. .+|.+++....+..++..+.+.+|+ +.++.+..+-+.-+.+
T Consensus 11 ~pGiva~vt~~la~~g--~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 11 RVGIVAGVSTKLAELN--VNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGK 68 (88)
T ss_pred CCCHHHHHHHHHHHcC--CCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5778999999998884 3555555555677888888888887 6778877766555543
No 65
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.52 E-value=7.6e+02 Score=24.04 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHhHHhhhhhhhhhHHHHHHHHHHhhh-h-----hhhhhHHHHHHHHHHHHHHHH
Q 017001 228 SIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSF-Y-----WWIDPAGAILLAVYTITNWSE 301 (379)
Q Consensus 228 ~i~~~s~~v~~~l~~~~r~~~s~~l~a~a~~~~~D~l~n~~~lla~~l~~~~-~-----~~~Dpi~aiiIa~~ii~~~~~ 301 (379)
+.+++++-+-+....|.....+..--+.......|.+.++=+++.+++|..+ . .+-=-.|++.++++++-.-.+
T Consensus 82 ~~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iir 161 (292)
T COG0581 82 LAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIR 161 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555554444455556678888888777777777643 2 344456788888888877777
Q ss_pred HHHHHHH
Q 017001 302 TVMENAV 308 (379)
Q Consensus 302 ~~~e~~~ 308 (379)
+..|+.+
T Consensus 162 tteeaL~ 168 (292)
T COG0581 162 TTEEALR 168 (292)
T ss_pred HHHHHHH
Confidence 6655553
No 66
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.50 E-value=8e+02 Score=23.94 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhchHHHHHhHHH-HHHHHHHHHHHHHH-HHHhccCCCCCCCCccc
Q 017001 117 MKISNYANIVLLACKIFATI-KSGSIAIAASTLD-SLLDLMAGGILWFT-HVAMKNINIYKYPIGKL 180 (379)
Q Consensus 117 ~~isl~~n~~l~i~ki~a~~-~s~S~aL~Adal~-sl~D~~s~~i~l~~-~~~~~~~~~~~~P~G~~ 180 (379)
+|....+.+++-++...+++ -+|+...+-=++- .++-.=.+.++|+- .+.+-|.| ..+.||.-
T Consensus 137 lwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsD-SSf~F~~F 202 (313)
T KOG3088|consen 137 LWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTD-SSFNFGAF 202 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccc-cchhhHHH
Confidence 44444555555444444444 3333333222211 11112223455554 33333444 56766653
No 67
>PRK00341 hypothetical protein; Provisional
Probab=20.04 E-value=1.8e+02 Score=23.10 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=38.4
Q ss_pred cccCCCCHHHHHHHHHHHHcCCCccccceEEEE--EECCeEEEEEEEEeCCCCCHHHHHHhh
Q 017001 310 LVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAY--TFGVLYFVEVGCSVPSLWLILKMIFIL 369 (379)
Q Consensus 310 Llg~s~~~e~~~~I~~~i~~~~~V~~V~~vr~~--~~G~~~~Vev~I~l~~~~~l~e~~~i~ 369 (379)
.+| .+.+++.+.|.+++.+|... +..++..+ +-|...-+.+.|.+...-.+.+.++-+
T Consensus 22 ViG-~~~~~~~~~V~~iv~~~~~~-~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L 81 (91)
T PRK00341 22 VIG-DTGVGFKDLVIEILQKHADV-DLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSAL 81 (91)
T ss_pred EEE-cCchhHHHHHHHHHHHhCCC-cccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHH
Confidence 455 35788999999999988422 23444444 445566788888888776666655543
Done!