RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017001
(379 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 119 bits (302), Expect = 1e-31
Identities = 48/251 (19%), Positives = 100/251 (39%), Gaps = 11/251 (4%)
Query: 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGI-LWFTHVAMKNINIY 173
RA + +LL KIFA +GS++I A+ +DSL+D+ A L +++ +
Sbjct: 4 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD-D 62
Query: 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGA 233
+ G + + + + + ++ + + ++ L+ P + I A
Sbjct: 63 NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-----DPGVGVIVTIVA 117
Query: 234 TVVKLALWIYCKSSGNKI----VRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAI 289
+ + L + + + VRA + DV+ N L+A L + D A+
Sbjct: 118 LICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 177
Query: 290 LLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYF 349
+ +Y + + E SL+ ++ P E Q++ +V P V +R G F
Sbjct: 178 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRF 237
Query: 350 VEVGCSVPSLW 360
+++ +
Sbjct: 238 IQIHLEMEDSL 248
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.0 bits (163), Expect = 4e-12
Identities = 71/386 (18%), Positives = 131/386 (33%), Gaps = 108/386 (27%)
Query: 25 GSGRLSL--SRRNSVNA--LRHEFVSKLPEKVLAGIDAEAPFDVDTSKT---------IA 71
GS L + A L+ +F LPE + A D T+ ++
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPT----EGFAADDEPTTPAELVGKFLGYVS 69
Query: 72 --LSEGE-KEYYESQFATLKSFEEVDVLVDSD--CFIEEDLQEQVQHERAMK--ISNYAN 124
+ + ++ + L FE L +D + LQE K I NY
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 125 IVLLACKIFATIKSGSIAIAASTLDSLLDLMA--GG----ILWFTHVAMKNI-NIYKYPI 177
++A K KS S A+ + + L+A GG +F ++++ Y +
Sbjct: 129 ARIMA-KRPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLV 184
Query: 178 GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEP--PKKMNTVQLEWL--------- 226
G L I F+A + L E + + E + +N ++ WL
Sbjct: 185 GDL-------IKFSA-------ETLSELIRTTLDAEKVFTQGLNILE--WLENPSNTPDK 228
Query: 227 -------YSI-MIGATVVKLALW-IYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVL-- 275
S +IG V++LA + + K G + + + GLV AV
Sbjct: 229 DYLLSIPISCPLIG--VIQLAHYVVTAKLLG--FTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 276 ----GDSFY----------WWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQ 321
+SF+ ++I G Y T+ +++E+++ + P
Sbjct: 285 ETDSWESFFVSVRKAITVLFFI---GVRCYEAYPNTSLPPSILEDSLE-NNEGVP----- 335
Query: 322 KLTY-LVIR---HPEV-KRIDTVRAY 342
+ L I +V ++ ++
Sbjct: 336 --SPMLSISNLTQEQVQDYVNKTNSH 359
Score = 40.4 bits (94), Expect = 0.001
Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 73/262 (27%)
Query: 77 KEYYESQFATLKSFEEVDV-LVDSDCF-----IEEDLQEQVQH---ERAMKI-SNYANIV 126
+ Y++ A + D D+ F + + H E+ +I NY+ ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 127 --------LLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMK--NINIYKYP 176
L KIF I S + + LL FT A+ ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-----FTQPALTLMEKAAFED- 1746
Query: 177 IGKLRVQPVGIIIFAAIMA--TLG-------------FQVLIEAVE---KLVKDEPPKKM 218
L+ + G+I A A +LG + L+E V ++ P+
Sbjct: 1747 ---LKSK--GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 219 NTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDV-VTN-------VV-- 268
+ +I G + + +V K + V + N V
Sbjct: 1802 LGRSNYGMIAINPGRVAASF-----SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 269 GLVAAVLGDSFYWWIDPAGAIL 290
G + A+ D +L
Sbjct: 1857 GDLRAL---------DTVTNVL 1869
Score = 36.6 bits (84), Expect = 0.016
Identities = 44/300 (14%), Positives = 91/300 (30%), Gaps = 105/300 (35%)
Query: 119 ISNYANIVLLACKI-------FATIKSG----------SIAIAAS-TLDSLLDLMAGGIL 160
+++Y ++ K+ + G ++AIA + + +S + I
Sbjct: 246 LAHY----VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 161 WFTHVAMKNINIYKYPIGKLRVQ---PVGIIIFAAI-------------MAT---LGFQV 201
IG +R P + + + M + L +
Sbjct: 302 VLFF------------IG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 202 LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGAT--VV--------KLALWI--YCKSSG- 248
+ + V K P K V++ S++ GA VV L L + SG
Sbjct: 349 VQDYVNKTNSHLPAGK--QVEI----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 249 --NKIV---RAYAKDHYFDVVT---------NVVGLVAA-VLGDSFYWWIDPAGAILLAV 293
++I R + F V L+ ++ ++ + A I + V
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN---AKDIQIPV 459
Query: 294 YTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVG 353
Y + S+ + I +++ +IR P + F + ++ G
Sbjct: 460 YDTFDGSDL----------RVLSGSISERIVDCIIRLP----VKWETTTQFKATHILDFG 505
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.006
Identities = 38/220 (17%), Positives = 60/220 (27%), Gaps = 69/220 (31%)
Query: 22 KRSGSGRLSLSRRNSVNAL-----RHEFVS--------KLPEKVLA----GIDAEAPFDV 64
K +L+ +S+N L R F +P +L+ + V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 65 DTS--KTIALSEGEKEYYES----QFATLKSFEEVDVL----VDS----DCFIEEDLQEQ 110
K + + KE S E L VD F +DL
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 111 VQ----------H----ERAMKISNYANIVL----LACKIFATIKSGSIAIA-ASTLDSL 151
H E +++ + + L L KI + A S L++L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNTL 524
Query: 152 LDL----------------MAGGILWFTHVAMKNINIYKY 175
L + IL F +N+ KY
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Score = 36.8 bits (84), Expect = 0.013
Identities = 38/359 (10%), Positives = 94/359 (26%), Gaps = 106/359 (29%)
Query: 74 EGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVL---LAC 130
Y Q L + + V + + +++ + +++ N+++ L
Sbjct: 106 SMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPY-LKLR-QALLELRPAKNVLIDGVLGS 161
Query: 131 KIFATIKSGSIAIAASTLDS--LLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGII 188
K+ +A S + M I W + P ++
Sbjct: 162 G-----KT---WVALDVCLSYKVQCKMDFKIFWLN-------------LKNCN-SPETVL 199
Query: 189 IFAAIMATLGFQVLIEAVEKL-VKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS- 246
++ L +Q+ + +++++Q L + L Y
Sbjct: 200 E---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRL--------LKSKPYENCL 247
Query: 247 ------SGNKIVRAYAKDHYFD------VVTNVVGLVAAVLGDSFYWWIDPAGAILLAVY 294
K A F+ + T + + + +
Sbjct: 248 LVLLNVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTL 298
Query: 295 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVI-----------------RHPEVKRID 337
T ++++ + Q P E+L + +H ++
Sbjct: 299 TPDE-VKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 338 TVRAYTFGVL-------YFVEVGCSV-------PS-----LWLILKMIFILPIITTLFS 377
T+ + VL F SV P+ +W + ++ ++ L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 32.0 bits (73), Expect = 0.091
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEV 352
++ + ++ R P V VR G YF+E+
Sbjct: 6 RTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEM 44
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 29.6 bits (67), Expect = 0.44
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 310 LVGQSAPPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEV 352
L+ + PPE ++++ + + ++ G F+E
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEF 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,815,011
Number of extensions: 359339
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 607
Number of HSP's successfully gapped: 13
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)