RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017001
         (379 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 94.1 bits (233), Expect = 3e-23
 Identities = 37/199 (18%), Positives = 78/199 (39%), Gaps = 1/199 (0%)

Query: 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYK 174
           RA   +     +LL  KIFA   +GS++I A+ +DSL+D+ A                  
Sbjct: 7   RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 66

Query: 175 YPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGAT 234
           +  G  + + +  +  +  ++     + +  ++ L+   P      V +      +I   
Sbjct: 67  HSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPM-TDPGVGVIVTIVALICTI 125

Query: 235 VVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVY 294
           ++        + + ++ VRA    +  DV+ N   L+A  L    +   D   A+ + +Y
Sbjct: 126 ILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIY 185

Query: 295 TITNWSETVMENAVSLVGQ 313
            + +      E   SL+ +
Sbjct: 186 ILYSALRMGYEAVQSLLDR 204


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVGCSVPS 358
           + P E  Q++  +V   P V     +R    G   F+++   +  
Sbjct: 1   ALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMED 45


>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
           thermophilus [TaxId: 274]}
          Length = 82

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 316 PPEILQKLTYLVIRHPEVKRID--TVRAYTFGVLYFVEVGCSVPSLWLILK 364
           PPE ++++   +      + ++   ++    G   F+E    V     + +
Sbjct: 3   PPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEE 53


>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
          thermophilus [TaxId: 274]}
          Length = 127

 Score = 27.6 bits (61), Expect = 1.4
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 12 RRTSSSSRERKRSGSGRLSLSRRNSVNALRHEFVSKLPEKVLAGIDAEAPFDVDT 66
          RR  + +R   R G+G+++++ ++     +    +    + L  +DA   FD   
Sbjct: 8  RRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYI 62


>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
           cedar (Juniperus ashei) [TaxId: 13101]}
          Length = 346

 Score = 28.5 bits (63), Expect = 1.5
 Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 263 VVTNVVGLVAAVLGDSFYWWI--DPAGAILLAV-YTITNWSETVMENAVSLVGQSAPPEI 319
            VT+           +  +    + A  I+ +    I       +    ++ G+ A   +
Sbjct: 42  TVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHL 101

Query: 320 LQKLTYLVIR 329
                 L +R
Sbjct: 102 GNGGPCLFMR 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,386,778
Number of extensions: 64046
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 8
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)