BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017003
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
R ++ G D EL L G + VTI+KA+NLK M++ G SDPY +
Sbjct: 127 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 186
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEV 332
+ L K KT++ N LNP +N+ F++ E E L V
Sbjct: 187 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 227
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTFELIAED 322
++ V I++A +L + G SDPY +++ P K K T V LNP++N+TF+
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 323 KE--TQSLIFEVYIFLLF 338
E + L F VY F F
Sbjct: 82 AELAQRKLHFSVYDFDRF 99
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
R ++ G D EL L G + VTI+KA+NLK M++ G SDPY +
Sbjct: 126 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSL 328
+ L K KT++ N LNP +N+ F++ E E L
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTFELIAED 322
++ V I++A +L + G SDPY +++ P K K T V LNP++N+TF+
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 323 KE--TQSLIFEVYIFLLF 338
E + L F VY F F
Sbjct: 81 AELAQRKLHFSVYDFDRF 98
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
+ + TI++A LK M+ G +DPY +H+ P K++T + N NPVWN+T
Sbjct: 26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 317 E---LIAEDKETQSLIFEV 332
+ + ED + ++L V
Sbjct: 86 QYHGITEEDMQRKTLRISV 104
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
+ + TI++A LK M+ G +DPY +H+ P K++T + N NPVWN+T
Sbjct: 24 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 83
Query: 317 E---LIAEDKETQSLIFEV 332
+ + ED + ++L V
Sbjct: 84 QYHGITEEDMQRKTLRISV 102
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
K K+++T+V A L+ + G SDPY V + K +T + NLNPVW + F
Sbjct: 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT-KKRTKTIYGNLNPVWEENFHF 70
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
++ VT+ +A NL M+ G SDPY + + P L K KT V LNPVWN+TF
Sbjct: 21 EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETF 76
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
K+ VT+ A NL M+ G SDPY + + P K KT + + LNP WN+ TF+L
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 319 IAEDKETQ------------------SLIFEVYIFLLFFPAQWVPILNSEYG 352
DK+ + SL F V + + W +LN E G
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEG 129
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
K+ VT+ A NL M+ G SDPY + + P K KT + + LNP WN+ TF+L
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 319 IAEDKETQ------------------SLIFEVYIFLLFFPAQWVPILNSEYG 352
DK+ + SL F V + + W +LN E G
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEG 128
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTF 316
+ + V I+KA L + G SDP+ +++ P K++T V NLNP WN+TF
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF 80
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQT 315
S ++K G + V ++KA +L + GKSDP+ ++ + +++T+ V NLNP WN+
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-DRLQTHTVYKNLNPEWNKV 63
Query: 316 FELIAEDKETQSLIFEVYIF 335
F +D + EV +F
Sbjct: 64 FTFPIKDIHD---VLEVTVF 80
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 265 KVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELI 319
K V +++A + +M+ DPY + I P + +T +N++NPVWN+TFE I
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 320 AEDKETQSL 328
+ + L
Sbjct: 64 LDPNQENVL 72
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL-IAED 322
V + A NL M+ G SDPY + + K K KT + ++LNP WN+TF + E
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 323 KETQSLIFEVY 333
+ + L E++
Sbjct: 236 DKDRRLSVEIW 246
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFEL 318
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 319 IAEDKETQSLIFEVYIFLLF 338
+ ++L+ VY F F
Sbjct: 93 PYSELGGKTLVMAVYDFDRF 112
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 24/112 (21%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
K+ VT+ A NL + G SDPY + + P K KT + + LNP WN+ TF+L
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 319 IAEDKETQ------------------SLIFEVYIFLLFFPAQWVPILNSEYG 352
DK+ + SL F V + W +LN E G
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKLLNQEEG 130
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFELIA 320
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 321 EDKETQSLIFEVYIFLLF 338
+ ++L+ VY F F
Sbjct: 95 SELGGKTLVMAVYDFDRF 112
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFELI 319
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 320 AEDKETQSLIFEVYIFLLF 338
+ ++L+ VY F F
Sbjct: 79 YSELAGKTLVMAVYDFDRF 97
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL 318
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N++F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 258 LELKPQGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVW 312
+E + K V +++A + +M+ DPY + I P + +T +N++NPVW
Sbjct: 12 VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71
Query: 313 NQTFELI 319
N+TFE I
Sbjct: 72 NETFEFI 78
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFEL 318
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 319 IAEDKETQSLIFEVYIFLLF 338
+ ++L+ VY F F
Sbjct: 101 PYSELGGKTLVMAVYDFDRF 120
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL-IAED 322
V + A NL M+ G SDPY + + K K KT + +LNP WN+TF + E
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 323 KETQSLIFEVYIFLL 337
+ + L E++ + L
Sbjct: 95 DKDRRLSVEIWDWDL 109
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFELI 319
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 17 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 76
Query: 320 AEDKETQSLIFEVYIFLLF 338
+ ++L+ VY F F
Sbjct: 77 YSELGGKTLVMAVYDFDRF 95
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 247 PIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI------KPLFKVK 300
P+ G+ D E + + V +V +L ++ G SDPY + + + L V+
Sbjct: 9 PVYGLSEDEGESRI-----LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQ 63
Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333
T + LNP WN+ F + L+FEV+
Sbjct: 64 TKTIKKTLNPKWNEEFYFRV-NPSNHRLLFEVF 95
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 258 LELKPQGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVW 312
+E + K V +++A + +M+ DPY + I P + +T +N++NPVW
Sbjct: 12 VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71
Query: 313 NQTFELI 319
N+TFE I
Sbjct: 72 NETFEFI 78
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL 318
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N++F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTF 316
+ V I+KA NLK M++ G SDPY V + K + K KT NLNP++N++F
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESF 72
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL 318
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N++F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 75
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL 318
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N++F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 76
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
G++ V +++A LK + GKS+PY + + T + + LNP WN + +D
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQ-SYTTRTIQDTLNPKWNFNCQFFIKD- 444
Query: 324 ETQSLIFEVYIFLLFFPAQWVP 345
L +V LF Q+ P
Sbjct: 445 ----LYQDVLCLTLFDRDQFSP 462
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQTFELIA 320
V V ++ L +++G SDPY V + L V+T + +LNP WN+ L
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI-LFR 80
Query: 321 EDKETQSLIFEVY 333
+ L+FEV+
Sbjct: 81 VHPQQHRLLFEVF 93
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
Query: 255 TSELELKPQ---GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-------------LFK 298
T E++L+ G + + I++A NL + G SDP+ V++ P +K
Sbjct: 6 TGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYK 65
Query: 299 VKTNVVDNNLNPVWNQT 315
+T V +LNP WNQT
Sbjct: 66 RRTKYVQKSLNPEWNQT 82
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQTF 316
QG + V I++ +L M+ G SDP+ + +KP K KT + LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEF 93
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQTF-- 316
QG + V I++ +L M+ G SDP+ + +KP K KT + LNP +N+ F
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 317 ELIAEDKETQSLIFEVYIF 335
++ D +SL V+ +
Sbjct: 74 DIKHSDLAKKSLDISVWDY 92
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK-TNVVDNNLNPVWNQTFEL 318
K+ +T++ A NL + DP+A + + + T+ V N L+P WNQ ++L
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL 60
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
++ VTI+ A +L + E +PY ++ P K +T V L P WNQTF
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
++ VTI+ A +L + E +PY ++ P K +T V L P WNQTF
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTF 316
P G + V +V A L++ + + DPY + + + K+NV + P WN+TF
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETF 62
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK-TNVVDNNLNPVWNQTFEL 318
K+ +T++ A NL + DP+A V + + T+ V N L+P WNQ ++L
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDL 58
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFEL 318
+ K+ V + NL G SDPY +++ P + KT+V LNPV++Q+F+
Sbjct: 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 319 IAEDKETQSLIFEVYI 334
E Q +V +
Sbjct: 82 SVSLPEVQRRTLDVAV 97
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQT--FEL 318
V V ++ L +++G SDPY V + L V+T + +LNP WN+ F +
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 319 IAEDKETQSLIFEVY 333
+ + ++FEV+
Sbjct: 70 LP---QRHRILFEVF 81
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
QG + V I++ +L + G SDP+ + +KP K KT + LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEF 93
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTF 316
+ V ++KA +L ++ G SDPY V++ K + K KT+V N V+N+ F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELF 86
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 268 VTIVKANNLKNM-EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTF 316
V I +A L M E SDPY + I P KVKT V+ L+P +++TF
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETF 77
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL 318
G + V + A+N+ + GK DP V I K KT VDN LNPVWN+ E
Sbjct: 6 SGMLRVIVESASNIPKTKF-GKPDPIVSV-IFKDEKKKTKKVDNELNPVWNEILEF 59
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 204 RIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQ 263
++D + A G + A PGI D++ + ++TD + I+ I I +DT E
Sbjct: 298 KVDEVVAAAGIKIVA-PGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDE------ 350
Query: 264 GKVAVTIVKANNLKNMEMIGK 284
A +VKA+ L ++E + K
Sbjct: 351 ---AGVVVKADTLGSLEAVVK 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,703,208
Number of Sequences: 62578
Number of extensions: 424874
Number of successful extensions: 1100
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 50
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)