Query 017003
Match_columns 379
No_of_seqs 323 out of 1533
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 9.6E-47 2.1E-51 388.9 31.2 271 65-341 218-514 (1227)
2 cd04016 C2_Tollip C2 domain pr 99.8 2.4E-19 5.1E-24 147.4 12.7 99 263-364 1-121 (121)
3 cd08681 C2_fungal_Inn1p-like C 99.7 2.9E-17 6.2E-22 134.8 11.9 98 264-364 1-118 (118)
4 cd08682 C2_Rab11-FIP_classI C2 99.7 3.1E-17 6.6E-22 136.3 11.9 97 266-363 1-126 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.1E-16 2.4E-21 132.0 13.2 99 266-365 2-120 (121)
6 KOG1030 Predicted Ca2+-depende 99.7 7.5E-17 1.6E-21 136.1 11.8 110 261-373 3-131 (168)
7 cd08375 C2_Intersectin C2 doma 99.7 2E-16 4.4E-21 133.0 12.3 100 261-365 12-136 (136)
8 cd08379 C2D_MCTP_PRT_plant C2 99.7 2.4E-16 5.2E-21 130.4 11.5 72 265-338 1-75 (126)
9 cd04019 C2C_MCTP_PRT_plant C2 99.7 3.2E-16 6.9E-21 134.0 12.4 99 266-365 2-132 (150)
10 cd08378 C2B_MCTP_PRT_plant C2 99.7 3.2E-16 6.9E-21 129.3 11.7 94 266-364 2-119 (121)
11 cd04015 C2_plant_PLD C2 domain 99.7 4.9E-16 1.1E-20 134.1 12.6 101 263-364 6-157 (158)
12 cd04022 C2A_MCTP_PRT_plant C2 99.7 4.3E-16 9.4E-21 129.6 11.5 100 265-365 1-126 (127)
13 cd04024 C2A_Synaptotagmin-like 99.7 7.8E-16 1.7E-20 127.9 12.4 99 264-363 1-127 (128)
14 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.4E-15 3E-20 124.9 13.5 99 264-364 1-118 (119)
15 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.3E-15 2.9E-20 124.4 12.8 94 265-364 1-114 (116)
16 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 9.6E-16 2.1E-20 126.4 12.0 98 266-364 2-121 (121)
17 cd08677 C2A_Synaptotagmin-13 C 99.7 4.6E-16 1E-20 126.3 8.8 85 254-341 4-93 (118)
18 cd08400 C2_Ras_p21A1 C2 domain 99.6 2.5E-15 5.5E-20 124.8 13.0 99 263-365 3-123 (126)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 2E-15 4.4E-20 124.7 12.2 97 265-362 1-122 (123)
20 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 2.2E-15 4.7E-20 126.3 12.2 99 265-364 1-132 (133)
21 cd04046 C2_Calpain C2 domain p 99.6 3.1E-15 6.7E-20 124.3 13.0 101 262-364 1-121 (126)
22 cd08391 C2A_C2C_Synaptotagmin_ 99.6 2.7E-15 5.8E-20 123.4 12.0 95 264-363 1-120 (121)
23 cd04036 C2_cPLA2 C2 domain pre 99.6 2.3E-15 5E-20 123.7 11.1 73 266-338 2-76 (119)
24 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 4.8E-15 1E-19 122.2 12.6 97 266-363 2-120 (121)
25 cd08381 C2B_PI3K_class_II C2 d 99.6 1.5E-15 3.2E-20 125.5 9.3 78 263-341 12-96 (122)
26 cd04017 C2D_Ferlin C2 domain f 99.6 4.7E-15 1E-19 124.7 11.9 98 265-365 2-132 (135)
27 cd08393 C2A_SLP-1_2 C2 domain 99.6 2.3E-15 4.9E-20 124.9 9.2 88 254-341 5-99 (125)
28 cd08678 C2_C21orf25-like C2 do 99.6 8.5E-15 1.8E-19 121.6 12.5 97 266-365 1-120 (126)
29 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.7E-15 5.8E-20 124.5 9.4 87 255-341 6-99 (125)
30 cd04028 C2B_RIM1alpha C2 domai 99.6 4.6E-15 9.9E-20 125.7 10.3 79 262-341 27-111 (146)
31 cd08395 C2C_Munc13 C2 domain t 99.6 5.5E-15 1.2E-19 121.2 10.2 76 265-341 1-85 (120)
32 cd04041 C2A_fungal C2 domain f 99.6 4.8E-15 1E-19 120.3 9.5 78 264-341 1-84 (111)
33 cd08382 C2_Smurf-like C2 domai 99.6 1.2E-14 2.5E-19 120.3 11.7 95 266-362 2-122 (123)
34 cd08392 C2A_SLP-3 C2 domain fi 99.6 5.3E-15 1.1E-19 123.1 9.6 88 254-341 5-99 (128)
35 cd08387 C2A_Synaptotagmin-8 C2 99.6 4.3E-15 9.3E-20 123.0 9.0 88 254-341 6-97 (124)
36 cd08680 C2_Kibra C2 domain fou 99.6 5.5E-15 1.2E-19 122.1 8.8 88 254-341 4-98 (124)
37 cd04044 C2A_Tricalbin-like C2 99.6 2.2E-14 4.7E-19 118.5 12.1 99 263-364 1-122 (124)
38 KOG0696 Serine/threonine prote 99.6 1.3E-15 2.8E-20 144.5 5.1 95 261-355 177-295 (683)
39 cd08406 C2B_Synaptotagmin-12 C 99.6 6.8E-15 1.5E-19 123.6 8.9 88 254-341 5-98 (136)
40 cd04027 C2B_Munc13 C2 domain s 99.6 3.2E-14 6.9E-19 118.3 12.7 96 265-362 2-127 (127)
41 cd04031 C2A_RIM1alpha C2 domai 99.6 1E-14 2.2E-19 120.7 9.5 87 255-341 7-100 (125)
42 cd04050 C2B_Synaptotagmin-like 99.6 1.8E-14 4E-19 115.7 10.6 72 265-337 1-72 (105)
43 cd08407 C2B_Synaptotagmin-13 C 99.6 1.5E-14 3.2E-19 121.7 9.1 88 254-341 5-100 (138)
44 cd04045 C2C_Tricalbin-like C2 99.6 4.3E-14 9.3E-19 116.4 11.6 89 264-353 1-108 (120)
45 cd04014 C2_PKC_epsilon C2 doma 99.5 7E-14 1.5E-18 117.0 12.7 77 263-341 3-89 (132)
46 cd08521 C2A_SLP C2 domain firs 99.5 1.7E-14 3.6E-19 119.1 8.7 88 254-341 4-98 (123)
47 cd08385 C2A_Synaptotagmin-1-5- 99.5 2.4E-14 5.2E-19 118.5 9.7 87 255-341 7-97 (124)
48 cd04039 C2_PSD C2 domain prese 99.5 3.6E-14 7.8E-19 114.5 10.2 77 264-341 1-82 (108)
49 cd08688 C2_KIAA0528-like C2 do 99.5 2.9E-14 6.3E-19 115.5 9.5 75 266-341 1-79 (110)
50 cd08388 C2A_Synaptotagmin-4-11 99.5 3.7E-14 8E-19 118.1 9.5 95 254-348 6-111 (128)
51 cd08408 C2B_Synaptotagmin-14_1 99.5 4E-14 8.6E-19 119.4 9.7 89 253-341 4-99 (138)
52 cd08373 C2A_Ferlin C2 domain f 99.5 1.1E-13 2.3E-18 115.1 12.1 94 270-366 2-117 (127)
53 cd08383 C2A_RasGAP C2 domain ( 99.5 7.3E-14 1.6E-18 114.2 10.9 95 266-364 2-117 (117)
54 cd04030 C2C_KIAA1228 C2 domain 99.5 6.1E-14 1.3E-18 116.4 10.1 85 254-338 6-96 (127)
55 cd08685 C2_RGS-like C2 domain 99.5 4.2E-14 9E-19 116.2 8.7 78 261-339 9-91 (119)
56 cd04038 C2_ArfGAP C2 domain pr 99.5 1.7E-13 3.6E-18 116.4 12.6 76 263-341 1-76 (145)
57 cd04010 C2B_RasA3 C2 domain se 99.5 8.9E-14 1.9E-18 118.4 10.0 74 266-341 2-94 (148)
58 cd08386 C2A_Synaptotagmin-7 C2 99.5 9.8E-14 2.1E-18 114.9 9.6 87 255-341 7-98 (125)
59 cd04043 C2_Munc13_fungal C2 do 99.5 3.7E-13 8E-18 111.6 12.4 77 265-341 2-80 (126)
60 cd08389 C2A_Synaptotagmin-14_1 99.5 1.1E-13 2.3E-18 114.7 8.8 87 254-341 6-97 (124)
61 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 6.3E-14 1.4E-18 121.4 7.3 81 261-341 24-111 (162)
62 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.1E-13 2.3E-18 116.5 8.5 88 254-341 5-98 (136)
63 cd04051 C2_SRC2_like C2 domain 99.5 1.2E-13 2.7E-18 114.4 8.7 77 265-341 1-82 (125)
64 cd04032 C2_Perforin C2 domain 99.5 1.5E-13 3.3E-18 113.8 9.1 79 261-341 25-104 (127)
65 cd08394 C2A_Munc13 C2 domain f 99.5 3.7E-13 8E-18 110.5 11.1 72 264-341 2-73 (127)
66 cd08384 C2B_Rabphilin_Doc2 C2 99.5 1.4E-13 3.1E-18 115.2 8.9 87 255-341 4-96 (133)
67 cd04026 C2_PKC_alpha_gamma C2 99.5 2.2E-13 4.9E-18 113.8 10.0 93 263-355 12-128 (131)
68 cd04040 C2D_Tricalbin-like C2 99.5 3E-13 6.5E-18 110.3 10.4 76 266-341 1-76 (115)
69 cd08676 C2A_Munc13-like C2 dom 99.5 2.3E-13 4.9E-18 116.4 9.9 77 260-336 24-128 (153)
70 cd08410 C2B_Synaptotagmin-17 C 99.5 1.6E-13 3.5E-18 115.4 8.9 87 255-341 5-97 (135)
71 cd08405 C2B_Synaptotagmin-7 C2 99.5 1.9E-13 4.1E-18 115.0 9.1 87 255-341 6-98 (136)
72 cd08390 C2A_Synaptotagmin-15-1 99.5 2.8E-13 6E-18 111.8 9.7 87 255-341 5-96 (123)
73 cd08692 C2B_Tac2-N C2 domain s 99.5 3.8E-13 8.2E-18 111.9 9.7 93 255-347 5-106 (135)
74 cd04018 C2C_Ferlin C2 domain t 99.5 3E-13 6.5E-18 115.4 9.2 76 265-341 1-91 (151)
75 PLN03008 Phospholipase D delta 99.4 4.3E-13 9.3E-18 138.6 11.8 103 262-365 12-177 (868)
76 cd04009 C2B_Munc13-like C2 dom 99.4 4.1E-13 8.9E-18 112.6 9.1 85 257-341 9-103 (133)
77 cd04037 C2E_Ferlin C2 domain f 99.4 4.8E-13 1E-17 110.8 9.2 77 265-341 1-78 (124)
78 cd04049 C2_putative_Elicitor-r 99.4 8.5E-13 1.8E-17 109.2 10.7 77 264-341 1-81 (124)
79 cd08403 C2B_Synaptotagmin-3-5- 99.4 3.9E-13 8.5E-18 112.8 8.6 87 255-341 5-97 (134)
80 cd04021 C2_E3_ubiquitin_ligase 99.4 1.7E-12 3.7E-17 107.6 11.9 75 264-341 2-76 (125)
81 cd08409 C2B_Synaptotagmin-15 C 99.4 6.8E-13 1.5E-17 111.8 9.1 87 254-341 5-97 (137)
82 cd04011 C2B_Ferlin C2 domain s 99.4 9.8E-13 2.1E-17 106.7 9.5 74 263-341 3-80 (111)
83 cd08404 C2B_Synaptotagmin-4 C2 99.4 6.8E-13 1.5E-17 111.6 8.8 85 257-341 8-98 (136)
84 cd04052 C2B_Tricalbin-like C2 99.4 1.7E-12 3.8E-17 105.3 10.5 81 281-365 9-109 (111)
85 KOG1028 Ca2+-dependent phospho 99.4 9.1E-13 2E-17 130.5 10.6 113 253-365 156-294 (421)
86 cd08675 C2B_RasGAP C2 domain s 99.4 1.2E-12 2.6E-17 110.3 9.2 75 266-341 1-93 (137)
87 cd08686 C2_ABR C2 domain in th 99.4 3.3E-12 7.1E-17 103.5 10.9 63 266-335 1-67 (118)
88 cd08690 C2_Freud-1 C2 domain f 99.4 6.4E-12 1.4E-16 107.4 12.0 76 264-339 4-91 (155)
89 cd04013 C2_SynGAP_like C2 doma 99.4 1.4E-11 3.1E-16 104.2 12.9 101 261-367 8-141 (146)
90 cd00275 C2_PLC_like C2 domain 99.4 9.5E-12 2.1E-16 103.2 11.7 100 265-364 3-127 (128)
91 cd08691 C2_NEDL1-like C2 domai 99.3 1.6E-11 3.5E-16 103.2 12.9 71 265-338 2-85 (137)
92 PLN03200 cellulose synthase-in 99.3 2.3E-12 5E-17 144.6 10.1 100 260-363 1976-2098(2102)
93 cd00276 C2B_Synaptotagmin C2 d 99.3 5.5E-12 1.2E-16 105.5 8.5 87 255-341 5-97 (134)
94 cd04035 C2A_Rabphilin_Doc2 C2 99.3 1.3E-11 2.7E-16 102.0 9.6 84 255-338 6-96 (123)
95 PF10296 DUF2404: Putative int 99.3 2.7E-11 5.8E-16 94.5 9.7 85 74-158 1-89 (91)
96 PF00168 C2: C2 domain; Inter 99.3 1.3E-11 2.8E-16 94.1 7.8 76 266-341 1-78 (85)
97 cd04048 C2A_Copine C2 domain f 99.3 1.4E-11 3E-16 101.4 8.4 72 270-341 6-87 (120)
98 KOG1011 Neurotransmitter relea 99.2 2.1E-11 4.6E-16 120.6 6.4 104 262-367 293-426 (1283)
99 cd04047 C2B_Copine C2 domain s 99.2 1.2E-10 2.7E-15 94.1 9.7 73 269-342 5-86 (110)
100 KOG1028 Ca2+-dependent phospho 99.0 7.8E-10 1.7E-14 109.7 9.5 87 255-341 289-381 (421)
101 PLN02223 phosphoinositide phos 99.0 3.9E-09 8.5E-14 105.5 12.3 102 264-366 409-536 (537)
102 PLN02270 phospholipase D alpha 99.0 3.1E-09 6.7E-14 110.4 11.7 107 262-369 6-150 (808)
103 KOG2059 Ras GTPase-activating 98.9 2.3E-09 4.9E-14 107.8 8.3 101 263-365 4-125 (800)
104 PLN02952 phosphoinositide phos 98.9 9.7E-09 2.1E-13 104.7 12.6 104 263-367 469-599 (599)
105 smart00239 C2 Protein kinase C 98.9 1E-08 2.2E-13 79.9 9.4 74 266-339 2-77 (101)
106 COG5038 Ca2+-dependent lipid-b 98.9 4.4E-09 9.5E-14 111.2 8.9 109 261-369 1037-1165(1227)
107 cd08374 C2F_Ferlin C2 domain s 98.8 1.7E-08 3.8E-13 83.9 9.3 76 266-341 2-108 (133)
108 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.2E-08 2.7E-13 80.2 7.8 77 266-347 1-84 (109)
109 cd00030 C2 C2 domain. The C2 d 98.7 5.9E-08 1.3E-12 75.1 8.7 74 266-339 1-74 (102)
110 PLN02230 phosphoinositide phos 98.7 7.2E-08 1.6E-12 98.2 11.3 103 263-366 468-597 (598)
111 KOG1328 Synaptic vesicle prote 98.7 1.9E-08 4.1E-13 101.3 5.4 112 224-341 913-1034(1103)
112 PLN02222 phosphoinositide phos 98.6 2.5E-07 5.4E-12 94.2 12.2 103 263-366 451-580 (581)
113 PLN02228 Phosphoinositide phos 98.6 4.4E-07 9.5E-12 92.2 12.2 105 263-368 430-562 (567)
114 KOG0169 Phosphoinositide-speci 98.6 2.8E-07 6E-12 94.3 10.0 103 265-368 617-745 (746)
115 KOG1031 Predicted Ca2+-depende 98.5 2.3E-07 4.9E-12 91.6 8.2 101 263-365 2-136 (1169)
116 KOG3532 Predicted protein kina 98.3 2.2E-06 4.8E-11 86.1 9.9 233 55-295 79-358 (1051)
117 KOG1328 Synaptic vesicle prote 98.3 6.7E-08 1.4E-12 97.5 -1.0 77 261-337 111-217 (1103)
118 KOG1264 Phospholipase C [Lipid 98.3 1.5E-06 3.2E-11 89.0 8.3 77 264-341 1065-1147(1267)
119 PLN02352 phospholipase D epsil 98.2 1.1E-05 2.3E-10 84.2 10.5 104 262-369 8-132 (758)
120 KOG1326 Membrane-associated pr 98.0 5.1E-06 1.1E-10 87.0 3.6 93 261-353 610-715 (1105)
121 KOG1013 Synaptic vesicle prote 97.8 2E-05 4.4E-10 73.5 5.1 82 259-340 228-315 (362)
122 KOG2059 Ras GTPase-activating 97.5 0.00013 2.8E-09 74.3 5.5 103 263-366 130-277 (800)
123 PLN02964 phosphatidylserine de 97.4 0.00034 7.5E-09 72.5 7.3 73 261-341 51-124 (644)
124 KOG0905 Phosphoinositide 3-kin 97.4 0.00015 3.3E-09 77.3 4.5 79 262-340 1522-1607(1639)
125 KOG1013 Synaptic vesicle prote 97.2 5.1E-05 1.1E-09 70.9 -0.8 88 253-340 82-176 (362)
126 KOG1326 Membrane-associated pr 97.0 0.00024 5.1E-09 74.9 1.0 80 261-341 203-291 (1105)
127 KOG1011 Neurotransmitter relea 96.3 0.017 3.6E-07 58.8 8.6 73 263-336 1124-1205(1283)
128 cd08683 C2_C2cd3 C2 domain fou 96.2 0.0078 1.7E-07 49.3 4.7 75 266-340 1-106 (143)
129 KOG2060 Rab3 effector RIM1 and 96.1 0.011 2.4E-07 56.6 5.7 72 261-333 266-342 (405)
130 KOG1327 Copine [Signal transdu 95.4 0.026 5.6E-07 56.9 5.7 71 270-341 142-221 (529)
131 cd08684 C2A_Tac2-N C2 domain f 94.8 0.032 7E-07 42.6 3.3 83 268-352 3-93 (103)
132 KOG1265 Phospholipase C [Lipid 91.9 0.21 4.6E-06 52.9 4.7 72 262-337 701-781 (1189)
133 KOG1452 Predicted Rho GTPase-a 91.9 0.32 7E-06 45.7 5.4 75 261-337 48-124 (442)
134 cd08398 C2_PI3K_class_I_alpha 90.9 2 4.3E-05 36.9 9.0 71 263-337 7-85 (158)
135 PF12416 DUF3668: Cep120 prote 90.7 3 6.6E-05 40.4 11.0 96 266-365 2-132 (340)
136 cd08693 C2_PI3K_class_I_beta_d 89.8 2.8 6E-05 36.6 9.2 73 263-337 7-87 (173)
137 cd08695 C2_Dock-B C2 domains f 88.7 1.7 3.7E-05 38.4 7.0 53 297-349 53-114 (189)
138 cd08694 C2_Dock-A C2 domains f 87.7 4.3 9.3E-05 36.0 8.8 53 297-349 53-116 (196)
139 cd08687 C2_PKN-like C2 domain 87.6 2.9 6.2E-05 32.3 6.7 63 283-348 7-71 (98)
140 PF14429 DOCK-C2: C2 domain in 87.4 3.8 8.2E-05 36.0 8.5 65 297-363 59-135 (184)
141 KOG2238 Uncharacterized conser 86.3 0.24 5.3E-06 51.8 0.3 90 68-157 334-427 (795)
142 cd08380 C2_PI3K_like C2 domain 85.6 5.7 0.00012 33.8 8.5 98 264-362 8-120 (156)
143 PF15627 CEP76-C2: CEP76 C2 do 85.1 4.8 0.0001 34.4 7.6 77 262-339 7-100 (156)
144 PF00792 PI3K_C2: Phosphoinosi 83.2 17 0.00036 30.3 10.2 63 299-362 22-98 (142)
145 smart00142 PI3K_C2 Phosphoinos 83.0 6.8 0.00015 30.7 7.2 71 266-336 13-91 (100)
146 cd08397 C2_PI3K_class_III C2 d 82.8 6.7 0.00015 33.7 7.7 81 283-363 28-121 (159)
147 cd04012 C2A_PI3K_class_II C2 d 78.9 10 0.00022 32.9 7.6 77 263-339 7-95 (171)
148 PF01102 Glycophorin_A: Glycop 77.1 2.7 5.8E-05 34.4 3.1 16 4-19 66-81 (122)
149 KOG3837 Uncharacterized conser 75.9 2.9 6.4E-05 41.0 3.5 79 262-340 365-458 (523)
150 cd08399 C2_PI3K_class_I_gamma 75.8 8.9 0.00019 33.6 6.3 72 264-336 10-88 (178)
151 KOG1327 Copine [Signal transdu 73.3 4.2 9.1E-05 41.4 4.1 41 298-338 42-82 (529)
152 PF01102 Glycophorin_A: Glycop 72.4 5 0.00011 32.8 3.6 24 2-25 68-91 (122)
153 cd08696 C2_Dock-C C2 domains f 67.2 22 0.00048 31.2 6.8 52 297-348 54-118 (179)
154 PRK09458 pspB phage shock prot 63.3 18 0.00039 26.8 4.6 13 49-61 60-72 (75)
155 cd08679 C2_DOCK180_related C2 63.2 26 0.00057 30.5 6.6 50 298-348 54-115 (178)
156 PF06667 PspB: Phage shock pro 63.0 21 0.00047 26.5 5.0 13 49-61 60-72 (75)
157 TIGR02976 phageshock_pspB phag 62.0 22 0.00047 26.5 4.9 14 48-61 59-72 (75)
158 PF01034 Syndecan: Syndecan do 61.4 2.6 5.7E-05 30.1 -0.1 24 2-25 13-36 (64)
159 PF06305 DUF1049: Protein of u 59.9 21 0.00046 25.4 4.6 14 6-19 27-40 (68)
160 cd08697 C2_Dock-D C2 domains f 59.2 38 0.00083 29.8 6.8 40 297-336 56-97 (185)
161 KOG0694 Serine/threonine prote 58.0 11 0.00024 39.5 3.7 52 284-337 27-78 (694)
162 PF12732 YtxH: YtxH-like prote 56.5 14 0.0003 27.2 3.1 20 3-22 1-20 (74)
163 PF15102 TMEM154: TMEM154 prot 54.8 7 0.00015 32.8 1.4 6 71-76 132-137 (146)
164 PF02529 PetG: Cytochrome B6-F 44.8 45 0.00097 21.0 3.4 11 3-13 5-15 (37)
165 PF15179 Myc_target_1: Myc tar 42.2 21 0.00045 31.1 2.4 23 2-24 24-46 (197)
166 KOG1329 Phospholipase D1 [Lipi 40.2 48 0.001 36.0 5.2 54 285-339 138-192 (887)
167 PF06305 DUF1049: Protein of u 39.5 73 0.0016 22.6 4.7 17 3-19 28-44 (68)
168 PF12273 RCR: Chitin synthesis 36.2 27 0.00059 28.7 2.1 13 8-20 4-16 (130)
169 PF06295 DUF1043: Protein of u 35.8 40 0.00087 27.7 3.1 20 4-23 3-22 (128)
170 PF14316 DUF4381: Domain of un 35.6 1.2E+02 0.0025 25.4 6.0 6 71-76 97-102 (146)
171 COG3887 Predicted signaling pr 34.6 99 0.0021 32.3 6.1 39 62-102 89-127 (655)
172 PF15625 CC2D2AN-C2: CC2D2A N- 34.4 3E+02 0.0065 23.6 9.0 63 284-347 36-104 (168)
173 COG2851 CitM H+/citrate sympor 33.4 82 0.0018 31.0 5.1 32 6-37 177-208 (433)
174 TIGR01149 mtrG N5-methyltetrah 33.0 48 0.001 24.1 2.6 12 2-13 48-59 (70)
175 PF02439 Adeno_E3_CR2: Adenovi 32.8 75 0.0016 20.3 3.2 18 2-19 7-24 (38)
176 PRK01026 tetrahydromethanopter 32.2 44 0.00096 24.8 2.4 17 2-18 51-67 (77)
177 PF04210 MtrG: Tetrahydrometha 32.1 46 0.00099 24.2 2.4 15 2-16 48-62 (70)
178 PTZ00447 apical membrane antig 31.8 4.9E+02 0.011 25.4 9.8 106 262-376 56-188 (508)
179 CHL00008 petG cytochrome b6/f 31.5 79 0.0017 19.8 3.0 10 3-12 5-14 (37)
180 PRK00665 petG cytochrome b6-f 31.5 75 0.0016 19.9 2.9 10 3-12 5-14 (37)
181 COG2976 Uncharacterized protei 30.4 83 0.0018 28.1 4.3 22 6-27 24-45 (207)
182 COG4064 MtrG Tetrahydromethano 28.9 78 0.0017 23.0 3.1 16 2-17 51-66 (75)
183 KOG4092 Mitochondrial F1F0-ATP 27.9 31 0.00068 26.6 1.1 45 55-99 36-80 (108)
184 PF14023 DUF4239: Protein of u 26.4 3.8E+02 0.0082 23.6 8.1 24 4-27 4-27 (209)
185 KOG4269 Rac GTPase-activating 25.9 27 0.00058 37.8 0.5 68 262-336 757-828 (1112)
186 PF03672 UPF0154: Uncharacteri 24.7 1.2E+02 0.0025 21.8 3.4 18 2-19 2-19 (64)
187 PF13373 DUF2407_C: DUF2407 C- 23.3 72 0.0016 26.8 2.5 22 3-24 92-113 (140)
188 PF04971 Lysis_S: Lysis protei 21.3 1.4E+02 0.003 21.7 3.3 11 6-16 37-47 (68)
189 PRK11677 hypothetical protein; 20.7 1.3E+02 0.0027 25.1 3.4 16 4-19 7-22 (134)
190 PRK00081 coaE dephospho-CoA ki 20.4 79 0.0017 27.7 2.4 28 63-93 74-101 (194)
191 PF14356 DUF4403: Domain of un 20.1 6.9E+02 0.015 25.0 9.3 34 204-241 332-366 (427)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=9.6e-47 Score=388.95 Aligned_cols=271 Identities=32% Similarity=0.551 Sum_probs=243.6
Q ss_pred CCCcchHHHHHHHHhHchhhHHHHHHHHHHhHHHHHHhcCCCCcceEEEeEEecCCCCCeeeeeEEEe-cCCCeEEEEEE
Q 017003 65 PVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQS-LKQGQITMDID 143 (379)
Q Consensus 65 ~d~E~~eWlN~~l~~~Wp~~~~~~~~~i~~~l~~~l~~~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~-~~~~~~~ld~~ 143 (379)
.|+|++||||.+|+++||.+++.+++.+.+.+|+.|.++-|+||+.+.+++||||++||||.+||.|+ +++|.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999999886 67899999999
Q ss_pred EEEcC---------------CCcEEEEEEee--ee-eeEEEEEEEEEEEEEEEEEEEecCCCCccceEEEEecCCCcceE
Q 017003 144 FRWGG---------------DPSIILGVEAA--MV-ASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRI 205 (379)
Q Consensus 144 ~~~~g---------------~~~i~l~~~~~--~~-~~~~v~v~~~~~~g~~Rv~l~l~~~~P~~~~v~~sf~~~P~p~i 205 (379)
+++.. ++.|.|.++.+ ++ .++||.|+++.|.|++|++++|++..|++..++++|++. |++
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~--Pe~ 375 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEV--PEF 375 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecC--cce
Confidence 99985 34577777665 34 889999999999999999999999999999999999997 899
Q ss_pred EEEeeecCc-----CcccccchHHHHHHHHHHHHhhhcccCceEEeeeCCCCcccccccccCCcEEEEEEeecccccccc
Q 017003 206 DYTLKAVGG-----SLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNME 280 (379)
Q Consensus 206 df~l~~~g~-----~i~~iP~l~~~i~~~i~~~i~~~~v~P~~~~vpl~~~~~d~~~l~~~~~g~L~V~V~~A~~L~~~d 280 (379)
||.++++|+ ||+++|||++||+++|...++.++++|+.+++++...- ... ...+.|++.++|.+|++|...+
T Consensus 376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m--~~~-s~~aIGVv~vkI~sa~~lk~~d 452 (1227)
T COG5038 376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM--AGD-SGTAIGVVEVKIKSAEGLKKSD 452 (1227)
T ss_pred eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh--ccc-cCCeeEEEEEEEeeccCccccc
Confidence 999999984 68899999999999999999999999999999996321 111 3468999999999999999888
Q ss_pred --cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 281 --MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 281 --~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
..+..|||+.+........||++.++++||+|||+|++.+... +++|.+++||.+.+++|
T Consensus 453 ~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd 514 (1227)
T COG5038 453 STINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSD 514 (1227)
T ss_pred ccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCc
Confidence 5688999999997664567999999999999999999998765 78999999998887776
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.81 E-value=2.4e-19 Score=147.39 Aligned_cols=99 Identities=22% Similarity=0.422 Sum_probs=86.9
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCC-CCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~-tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
.|+|+|+|++|++++..+ .|++||||++.+++ .+++|+++.+ +.||+|||+|.|.+.+. ...|.++|||+|.+++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence 489999999999998877 79999999999998 6779999876 79999999999999764 56899999999998875
Q ss_pred ---------------------cEEEcccCCCCceeeEEEEEEEE
Q 017003 342 ---------------------QWVPILNSEYGAALSNMHLIYIY 364 (379)
Q Consensus 342 ---------------------~w~~L~~~~~g~~~g~i~l~~~~ 364 (379)
.|++|.+.+..+..|+|+|+++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 79999866666678999999987
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.73 E-value=2.9e-17 Score=134.79 Aligned_cols=98 Identities=23% Similarity=0.364 Sum_probs=85.3
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA- 341 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d- 341 (379)
|.|+|+|++|++|++.+..+++||||++++++ .+++|+++. +++||.|||+|.|.+.....+.|.++|||++..+.+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcc
Confidence 78999999999999999889999999999987 678888875 579999999999999876567899999999876532
Q ss_pred ------------------cEEEcccCCCCceeeEEEEEEEE
Q 017003 342 ------------------QWVPILNSEYGAALSNMHLIYIY 364 (379)
Q Consensus 342 ------------------~w~~L~~~~~g~~~g~i~l~~~~ 364 (379)
.|++|. ..|+..|+++++++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~--~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELT--LKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEec--cCCcEeeEEEEEEEC
Confidence 799995 356789999999886
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.73 E-value=3.1e-17 Score=136.31 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=83.0
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecC-----CCCceEEEEEEEcccCCC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-----KETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~-----~~~~~L~i~V~D~d~~~~ 340 (379)
++|+|++|+||+.++..|.+||||++.+++ .+++|+++++++||+|||+|.|.+.+ ...+.|.++|||+|.+++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 579999999999999889999999999987 68899999999999999999999876 346789999999998875
Q ss_pred C----------------------cEEEcccCC--CCceeeEEEEEEE
Q 017003 341 A----------------------QWVPILNSE--YGAALSNMHLIYI 363 (379)
Q Consensus 341 d----------------------~w~~L~~~~--~g~~~g~i~l~~~ 363 (379)
| .||+|.+.. .++..|+++++++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 4 799997433 2356789988874
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.72 E-value=1.1e-16 Score=131.98 Aligned_cols=99 Identities=24% Similarity=0.365 Sum_probs=87.5
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---- 341 (379)
|+|+|++|++|+..|..|.+||||++.+++...++|+++.+++||.|||+|.|.+.+. .+.+.++|||+|.+++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceE
Confidence 7899999999999998899999999999875678999999999999999999998765 57899999999998664
Q ss_pred ----------------cEEEcccCCCCceeeEEEEEEEEE
Q 017003 342 ----------------QWVPILNSEYGAALSNMHLIYIYK 365 (379)
Q Consensus 342 ----------------~w~~L~~~~~g~~~g~i~l~~~~~ 365 (379)
.|++|.+...++..|++.+.++|.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 699997665557899999998874
No 6
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.71 E-value=7.5e-17 Score=136.10 Aligned_cols=110 Identities=27% Similarity=0.334 Sum_probs=94.7
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~ 340 (379)
...|.|+|+|.+|.||..+|..++|||||.+.+++ ++.+|+++++++||+|||.|.|.+.++ ...|+++|||+|.+++
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 35899999999999999999889999999999998 789999999999999999999999986 7899999999999998
Q ss_pred C------------------cEEEcc-cCCCCceeeEEEEEEEEEEeeEEEEe
Q 017003 341 A------------------QWVPIL-NSEYGAALSNMHLIYIYKYLRICIYI 373 (379)
Q Consensus 341 d------------------~w~~L~-~~~~g~~~g~i~l~~~~~~~~~~~~~ 373 (379)
| .|+ |. ...+|...|.+.++..-+|.+...-+
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~~-l~~~~~~gt~~~~v~~s~dn~~~~es~i~ 131 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMDY-LKLELLTGTAIGKVLLSRDNCLNEESAII 131 (168)
T ss_pred ccccceeeeccHHHHHHhhhhc-cccccCCCcEeeEEEeccccccccceEEE
Confidence 7 354 33 23467778888888888877765443
No 7
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.70 E-value=2e-16 Score=133.05 Aligned_cols=100 Identities=28% Similarity=0.439 Sum_probs=85.9
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~ 340 (379)
...|.|+|+|++|++|++.|..|.+||||++.++. ..++|+++++++||.|||+|.|.+.+...+.|.++|||+|.+++
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 56899999999999999999889999999999987 68999999999999999999999987667789999999998876
Q ss_pred C-------------------------cEEEcccCCCCceeeEEEEEEEEE
Q 017003 341 A-------------------------QWVPILNSEYGAALSNMHLIYIYK 365 (379)
Q Consensus 341 d-------------------------~w~~L~~~~~g~~~g~i~l~~~~~ 365 (379)
| .|+++ +++..|+++|+++++
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----~~~~~g~i~l~~~~~ 136 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLL----HEVPTGEVVVKLDLQ 136 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecc----ccccceeEEEEEEeC
Confidence 5 23333 355678888888764
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.69 E-value=2.4e-16 Score=130.43 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=66.2
Q ss_pred EEEEEEeeccc---ccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 017003 265 KVAVTIVKANN---LKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF 338 (379)
Q Consensus 265 ~L~V~V~~A~~---L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~ 338 (379)
.|+|+|++|++ |+.+|..|.+||||++.+++ ++.||+++++++||+|||+|.|.+.+. ...|.++|||+|.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~ 75 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQS 75 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCc
Confidence 37999999999 88999999999999999988 688999999999999999999999775 45899999999987
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.69 E-value=3.2e-16 Score=133.97 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=84.9
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCC-CCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~-tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--- 341 (379)
|+|+|++|++|++++..|.+||||++++++ ++++|+++.+ ++||.|||+|.|.+.++..+.+.++|||++..++|
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 789999999999999999999999999998 7889998876 69999999999999776567899999999876443
Q ss_pred ---------------------cEEEcccCCC-------CceeeEEEEEEEEE
Q 017003 342 ---------------------QWVPILNSEY-------GAALSNMHLIYIYK 365 (379)
Q Consensus 342 ---------------------~w~~L~~~~~-------g~~~g~i~l~~~~~ 365 (379)
.||+|.+... .+..|+++|.++|.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 7999986532 35568888888887
No 10
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.68 E-value=3.2e-16 Score=129.27 Aligned_cols=94 Identities=23% Similarity=0.349 Sum_probs=82.7
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---- 341 (379)
|+|+|++|++|+.+ .+||||++.+++ .+.+|++++++.||.|||+|.|.+.+.....|.++|||+|..+.|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 78999999999887 689999999987 688999999999999999999998776678899999999875332
Q ss_pred --------------------cEEEcccCCCCceeeEEEEEEEE
Q 017003 342 --------------------QWVPILNSEYGAALSNMHLIYIY 364 (379)
Q Consensus 342 --------------------~w~~L~~~~~g~~~g~i~l~~~~ 364 (379)
.||+|.+...++..|++.|++.|
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 69999877667889999998876
No 11
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=4.9e-16 Score=134.09 Aligned_cols=101 Identities=32% Similarity=0.506 Sum_probs=82.6
Q ss_pred CcEEEEEEeeccccccccc------------------------------CCCCCcEEEEEEcCeeeEeeeccCCCCCCeE
Q 017003 263 QGKVAVTIVKANNLKNMEM------------------------------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW 312 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~------------------------------~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~W 312 (379)
+|+|.|+|.+|++|+++|. .|.+||||++++++.+..+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 7999999999999999872 4668999999998755679999999999999
Q ss_pred eeEEEEEecCCCCceEEEEEEEcccCCCC-------------------cEEEcccCCCCc--eeeEEEEEEEE
Q 017003 313 NQTFELIAEDKETQSLIFEVYIFLLFFPA-------------------QWVPILNSEYGA--ALSNMHLIYIY 364 (379)
Q Consensus 313 ne~f~f~v~~~~~~~L~i~V~D~d~~~~d-------------------~w~~L~~~~~g~--~~g~i~l~~~~ 364 (379)
||+|.|.+.+. .+.|.++|||+|.++.+ .|++|.+..... ..+.++++++|
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999998764 56899999999987654 799997543222 24567777666
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.67 E-value=4.3e-16 Score=129.57 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=84.3
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC---CceEEEEEEEcccCC-C
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE---TQSLIFEVYIFLLFF-P 340 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~---~~~L~i~V~D~d~~~-~ 340 (379)
.|+|+|++|++|+..+..|.+||||++++++ .+++|++++++.||.|||+|.|.+.+.. ...|.++|||++.++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 3799999999999999889999999999998 6789999999999999999999986532 357999999998875 3
Q ss_pred C---------------------cEEEcccCC-CCceeeEEEEEEEEE
Q 017003 341 A---------------------QWVPILNSE-YGAALSNMHLIYIYK 365 (379)
Q Consensus 341 d---------------------~w~~L~~~~-~g~~~g~i~l~~~~~ 365 (379)
| .||+|.... .++..|++.|++.+.
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 3 799997542 345789999888764
No 13
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.67 E-value=7.8e-16 Score=127.94 Aligned_cols=99 Identities=27% Similarity=0.453 Sum_probs=85.2
Q ss_pred cEEEEEEeeccccccccc--CCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 264 GKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
|+|+|+|++|++|+..+. .+.+||||.+.++. .+++|++++++.||.|||+|.|.+.+...+.|.++|||+|..++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 789999999999999988 88999999999987 678999999999999999999999875578999999999876443
Q ss_pred -----------------------cEEEcccCCC---CceeeEEEEEEE
Q 017003 342 -----------------------QWVPILNSEY---GAALSNMHLIYI 363 (379)
Q Consensus 342 -----------------------~w~~L~~~~~---g~~~g~i~l~~~ 363 (379)
.||+|.+.+. ++..|+++|.++
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 6999976532 346888888775
No 14
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.67 E-value=1.4e-15 Score=124.87 Aligned_cols=99 Identities=24% Similarity=0.388 Sum_probs=86.1
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC--
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-- 341 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-- 341 (379)
|.|+|+|++|++|+..+..+.+||||+++++. ..++|++++++.||.|||+|.|.+.+. .+.+.++|||++.++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCce
Confidence 78999999999999999889999999999987 578999999999999999999998764 57899999999986554
Q ss_pred ----------------cEEEcccCC-CCceeeEEEEEEEE
Q 017003 342 ----------------QWVPILNSE-YGAALSNMHLIYIY 364 (379)
Q Consensus 342 ----------------~w~~L~~~~-~g~~~g~i~l~~~~ 364 (379)
.|++|.+.. .++..|++.+++++
T Consensus 79 iG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEEe
Confidence 799997543 45678999998876
No 15
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.66 E-value=1.3e-15 Score=124.44 Aligned_cols=94 Identities=27% Similarity=0.338 Sum_probs=80.1
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--- 341 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--- 341 (379)
+++|+|++|++|+..+..+.+|||+++++++ .+++|+++++++||.|||+|.|.+.+...+.|.++|||++.+++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence 4789999999999999889999999999987 678999999999999999999999876578999999999988665
Q ss_pred -----------------cEEEcccCCCCceeeEEEEEEEE
Q 017003 342 -----------------QWVPILNSEYGAALSNMHLIYIY 364 (379)
Q Consensus 342 -----------------~w~~L~~~~~g~~~g~i~l~~~~ 364 (379)
.|++|.+. .|++.+.+.|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~ 114 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTL 114 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEe
Confidence 68888532 3666665554
No 16
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.66 E-value=9.6e-16 Score=126.38 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=82.1
Q ss_pred EEEEEeecccccccc-cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 017003 266 VAVTIVKANNLKNME-MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--- 341 (379)
|+|+|++|+||++.+ ..|.+||||.++++....++|+++++|+||.|||+|.|.+.+. ...|.+.|||+|.+++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4578999999999875578999999999999999999999753 57899999999998765
Q ss_pred -----------------cEEEcccC-CCCceeeEEEEEEEE
Q 017003 342 -----------------QWVPILNS-EYGAALSNMHLIYIY 364 (379)
Q Consensus 342 -----------------~w~~L~~~-~~g~~~g~i~l~~~~ 364 (379)
.|++|... ..++..|+++|+++|
T Consensus 81 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 81 GKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 69999743 345568999888764
No 17
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.65 E-value=4.6e-16 Score=126.27 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=73.8
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L 328 (379)
.++..|.+..|.|+|+|++|++|+ . .|.+||||++++.+ ..+++|+++++|+||.|||+|.|.+.. .....|
T Consensus 4 ~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL 80 (118)
T cd08677 4 HYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTL 80 (118)
T ss_pred EEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEE
Confidence 456778899999999999999998 2 46799999999964 257799999999999999999999854 356789
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|+++++
T Consensus 81 ~~~V~d~Drfs~~ 93 (118)
T cd08677 81 TLTLRCCDRFSRH 93 (118)
T ss_pred EEEEEeCCCCCCC
Confidence 9999999999887
No 18
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.65 E-value=2.5e-15 Score=124.80 Aligned_cols=99 Identities=17% Similarity=0.332 Sum_probs=81.5
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA- 341 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d- 341 (379)
...|+|+|++|+||+.. +.+||||++.+++.+..+|++. ++.||.|||+|.|.+.......+.+.|||++.+++|
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999875 4689999999987556788874 689999999999987654446799999999988765
Q ss_pred -------------------cEEEcccCC--CCceeeEEEEEEEEE
Q 017003 342 -------------------QWVPILNSE--YGAALSNMHLIYIYK 365 (379)
Q Consensus 342 -------------------~w~~L~~~~--~g~~~g~i~l~~~~~ 365 (379)
.|++|.... .++..|+++|+++|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 699997553 345679999999985
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.64 E-value=2e-15 Score=124.73 Aligned_cols=97 Identities=26% Similarity=0.451 Sum_probs=83.3
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--- 341 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--- 341 (379)
+|+|+|++|++|+.++..+.+||||+++++. .+++|+++++++||.|||+|.|.+.+.....|.++|||++.+++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 4899999999999999888999999999987 678999999999999999999999776567899999999987664
Q ss_pred -----------------cEEEcccC-----CCCceeeEEEEEE
Q 017003 342 -----------------QWVPILNS-----EYGAALSNMHLIY 362 (379)
Q Consensus 342 -----------------~w~~L~~~-----~~g~~~g~i~l~~ 362 (379)
.|+.|... ..++..|.+.+.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 79999742 3566788877765
No 20
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=2.2e-15 Score=126.27 Aligned_cols=99 Identities=21% Similarity=0.363 Sum_probs=84.3
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCe------eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF 338 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~------~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~ 338 (379)
.|+|+|++|++|+..+..|.+||||++++.+. .+++|+++++++||.|||+|.|.+... ...|.++|||+|.+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 37999999999999998899999999998752 257899999999999999999998653 56899999999987
Q ss_pred CCC--------------------------cEEEcccC-CCCceeeEEEEEEEE
Q 017003 339 FPA--------------------------QWVPILNS-EYGAALSNMHLIYIY 364 (379)
Q Consensus 339 ~~d--------------------------~w~~L~~~-~~g~~~g~i~l~~~~ 364 (379)
++| .||+|... ..|+..|+++++++|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 653 69999743 367789999999887
No 21
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=3.1e-15 Score=124.28 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=86.7
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
|.++|+|+|++|++|...+..|.+||||++.+++ .+++|++++++.||.|||+|.|.+.+. ...|.++|||++..+.+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 4678999999999999999889999999999987 678999999999999999999988764 67899999999987644
Q ss_pred -----------------cEEEccc---CCCCceeeEEEEEEEE
Q 017003 342 -----------------QWVPILN---SEYGAALSNMHLIYIY 364 (379)
Q Consensus 342 -----------------~w~~L~~---~~~g~~~g~i~l~~~~ 364 (379)
.|++|.. ...|+..|.+.+++++
T Consensus 79 ~lG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 79 FLGQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ceEEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 6888852 2567888888887754
No 22
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.64 E-value=2.7e-15 Score=123.41 Aligned_cols=95 Identities=27% Similarity=0.526 Sum_probs=79.7
Q ss_pred cEEEEEEeeccccccccc------CCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 017003 264 GKVAVTIVKANNLKNMEM------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL 337 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~------~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~ 337 (379)
|+|+|+|++|++|+..+. .|.+||||++++++ ..++|++++++.||.|||+|.|.+.+...+.|.++|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 789999999999998875 36899999999988 78999999999999999999999987667899999999987
Q ss_pred CCCC-------------------cEEEcccCCCCceeeEEEEEEE
Q 017003 338 FFPA-------------------QWVPILNSEYGAALSNMHLIYI 363 (379)
Q Consensus 338 ~~~d-------------------~w~~L~~~~~g~~~g~i~l~~~ 363 (379)
.+.+ .|++|.+. ..|++++.++
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred CCCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEe
Confidence 7332 79999644 3456666554
No 23
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.63 E-value=2.3e-15 Score=123.71 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=65.4
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF 338 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~ 338 (379)
|+|+|++|++|+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+.....+.|.++|||+|.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC
Confidence 789999999999998888999999999863 3578999999999999999999998765566799999999987
No 24
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.63 E-value=4.8e-15 Score=122.22 Aligned_cols=97 Identities=22% Similarity=0.378 Sum_probs=82.2
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA---- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d---- 341 (379)
|.|+|++|++|++++..|.+||||++.+++....+|+++++++||.|||+|.|.+.+. .+.|.++|||++.+++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999875567999999999999999999998653 57899999999987664
Q ss_pred -----------------cEEEcccC-CCCceeeEEEEEEE
Q 017003 342 -----------------QWVPILNS-EYGAALSNMHLIYI 363 (379)
Q Consensus 342 -----------------~w~~L~~~-~~g~~~g~i~l~~~ 363 (379)
.|++|.+. ..++..|++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 69999743 34456788877764
No 25
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=1.5e-15 Score=125.50 Aligned_cols=78 Identities=26% Similarity=0.357 Sum_probs=68.7
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEe-c--CCCCceEEEEEEEc
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA-E--DKETQSLIFEVYIF 335 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v-~--~~~~~~L~i~V~D~ 335 (379)
.+.|+|+|++|++|+.++ .+.+||||++++.+ ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 799999999999999999 88999999999974 3478999999999999999999987 2 33467899999999
Q ss_pred ccCCCC
Q 017003 336 LLFFPA 341 (379)
Q Consensus 336 d~~~~d 341 (379)
|.++++
T Consensus 91 d~~~~~ 96 (122)
T cd08381 91 DSLVEN 96 (122)
T ss_pred CCCcCC
Confidence 988765
No 26
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=4.7e-15 Score=124.70 Aligned_cols=98 Identities=22% Similarity=0.355 Sum_probs=83.1
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC---------CCceEEEEEEEc
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK---------ETQSLIFEVYIF 335 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~---------~~~~L~i~V~D~ 335 (379)
.|+|+|.+|++|+.+|..|.+||||+++++. .+++|+++++++||.|||+|.|.+... ....+.++|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5899999999999999999999999999987 688999999999999999999975321 125689999999
Q ss_pred ccCCCC------------------------cEEEcccCCCCceeeEEEEEEEEE
Q 017003 336 LLFFPA------------------------QWVPILNSEYGAALSNMHLIYIYK 365 (379)
Q Consensus 336 d~~~~d------------------------~w~~L~~~~~g~~~g~i~l~~~~~ 365 (379)
|..++| .|++|. +.|...|++.+++.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~--~~~~~~Geil~~~~~~ 132 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY--KGGQSAGELLAAFELI 132 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEee--cCCCchhheeEEeEEE
Confidence 987654 799995 5567889988888775
No 27
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.61 E-value=2.3e-15 Score=124.90 Aligned_cols=88 Identities=24% Similarity=0.235 Sum_probs=74.5
Q ss_pred ccccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCc
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQ 326 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~ 326 (379)
.++..|.+..+.|+|+|++|+||++++.. |.+||||++++.+ ..+++|+++++++||.|||+|.|.+.. ....
T Consensus 5 ~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~ 84 (125)
T cd08393 5 QFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTR 84 (125)
T ss_pred EEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCC
Confidence 34555777889999999999999999975 8899999999964 245799999999999999999999853 3456
Q ss_pred eEEEEEEEcccCCCC
Q 017003 327 SLIFEVYIFLLFFPA 341 (379)
Q Consensus 327 ~L~i~V~D~d~~~~d 341 (379)
.|.++|||+|.++++
T Consensus 85 ~L~~~V~d~~~~~~~ 99 (125)
T cd08393 85 VLNLSVWHRDSLGRN 99 (125)
T ss_pred EEEEEEEeCCCCCCC
Confidence 899999999988765
No 28
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.61 E-value=8.5e-15 Score=121.60 Aligned_cols=97 Identities=24% Similarity=0.409 Sum_probs=81.3
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcC-eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC---
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA--- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d--- 341 (379)
|.|+|++|++|+. ..|.+||||+++++. ..+++|+++++++||.|||.|.|.+.. ..+.|.++|||+|..++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999988 668999999999964 356899999999999999999999864 367899999999998754
Q ss_pred -----------------cEEEcccCC--CCceeeEEEEEEEEE
Q 017003 342 -----------------QWVPILNSE--YGAALSNMHLIYIYK 365 (379)
Q Consensus 342 -----------------~w~~L~~~~--~g~~~g~i~l~~~~~ 365 (379)
.|++|.... .++..|++.+.++|.
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 799997442 356688888888874
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.61 E-value=2.7e-15 Score=124.46 Aligned_cols=87 Identities=25% Similarity=0.276 Sum_probs=73.4
Q ss_pred cccccccCCcEEEEEEeeccccccccc-CCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQS 327 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~ 327 (379)
++..|....|.|.|+|++|+||+..+. .|.+||||++++.+ ..+++|+++++++||.|||+|.|.+.. .....
T Consensus 6 ~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~ 85 (125)
T cd04029 6 FSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRT 85 (125)
T ss_pred EEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCE
Confidence 455577889999999999999998875 47899999999864 246799999999999999999999854 23567
Q ss_pred EEEEEEEcccCCCC
Q 017003 328 LIFEVYIFLLFFPA 341 (379)
Q Consensus 328 L~i~V~D~d~~~~d 341 (379)
|.++|||+|.++++
T Consensus 86 L~~~V~d~~~~~~~ 99 (125)
T cd04029 86 LQLSVWHYDRFGRN 99 (125)
T ss_pred EEEEEEECCCCCCC
Confidence 99999999987665
No 30
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.60 E-value=4.6e-15 Score=125.71 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=68.2
Q ss_pred CCcEEEEEEeecccccccc-cCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEE-Ec
Q 017003 262 PQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY-IF 335 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~-D~ 335 (379)
..|.|.|+|++|+||++.+ ..|.+||||++++.+. .+++|+++++++||.|||+|.|.+. ..+..|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 4789999999999999874 5688999999999652 3789999999999999999999998 56789999999 67
Q ss_pred ccCCCC
Q 017003 336 LLFFPA 341 (379)
Q Consensus 336 d~~~~d 341 (379)
+.++++
T Consensus 106 ~~~~~~ 111 (146)
T cd04028 106 GRMDKK 111 (146)
T ss_pred CCCCCC
Confidence 776654
No 31
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.60 E-value=5.5e-15 Score=121.24 Aligned_cols=76 Identities=30% Similarity=0.380 Sum_probs=63.8
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEc----C--eeeEeeeccCCCCCCeEeeEEEEEecC---CCCceEEEEEEEc
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIK----P--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEVYIF 335 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~----~--~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~L~i~V~D~ 335 (379)
.|+|+|++|++|+..+ .|.+||||++++. + .++++|+++.+++||+|||+|.|.+.+ .....|.+.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3799999999999988 4999999999972 1 245789999999999999999999964 2345799999999
Q ss_pred ccCCCC
Q 017003 336 LLFFPA 341 (379)
Q Consensus 336 d~~~~d 341 (379)
|..++|
T Consensus 80 d~~~~d 85 (120)
T cd08395 80 CFARDD 85 (120)
T ss_pred cccCCC
Confidence 977655
No 32
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=4.8e-15 Score=120.35 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=68.2
Q ss_pred cEEEEEEeecccccccccC-CCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC---CCceEEEEEEEccc
Q 017003 264 GKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVYIFLL 337 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~---~~~~L~i~V~D~d~ 337 (379)
|+|+|+|++|++|+..+.. +.+||||++++.+ ...++|+++++++||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999853 2468999999999999999999987543 35689999999999
Q ss_pred CCCC
Q 017003 338 FFPA 341 (379)
Q Consensus 338 ~~~d 341 (379)
+++|
T Consensus 81 ~~~d 84 (111)
T cd04041 81 FTAD 84 (111)
T ss_pred CCCC
Confidence 8765
No 33
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.59 E-value=1.2e-14 Score=120.30 Aligned_cols=95 Identities=20% Similarity=0.339 Sum_probs=80.6
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC--C--
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP--A-- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~--d-- 341 (379)
|+|+|++|++|+..+..+.+||||++++++...++|+++++++||.|||+|.|.+.. .+.|.++|||++.+++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 789999999999999889999999999975468899999999999999999999975 6789999999998754 2
Q ss_pred -------------------cEEEcccCC---CCceeeEEEEEE
Q 017003 342 -------------------QWVPILNSE---YGAALSNMHLIY 362 (379)
Q Consensus 342 -------------------~w~~L~~~~---~g~~~g~i~l~~ 362 (379)
.|++|.... .|...|++.+++
T Consensus 80 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 588885433 466678877765
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.59 E-value=5.3e-15 Score=123.10 Aligned_cols=88 Identities=24% Similarity=0.251 Sum_probs=74.6
Q ss_pred ccccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCC--CCc
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQ 326 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~ 326 (379)
.++..|....+.|.|+|++|+||++++.. |.+||||++++.+. .++||+++++++||+|||+|.|.+... ...
T Consensus 5 ~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~ 84 (128)
T cd08392 5 EFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSR 84 (128)
T ss_pred EEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCc
Confidence 34556778899999999999999999875 89999999999652 367999999999999999999998542 356
Q ss_pred eEEEEEEEcccCCCC
Q 017003 327 SLIFEVYIFLLFFPA 341 (379)
Q Consensus 327 ~L~i~V~D~d~~~~d 341 (379)
.|.++|||++.++++
T Consensus 85 ~L~v~V~~~~~~~~~ 99 (128)
T cd08392 85 QLQVSVWHSRTLKRR 99 (128)
T ss_pred EEEEEEEeCCCCcCc
Confidence 899999999987654
No 35
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.59 E-value=4.3e-15 Score=122.97 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=75.2
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI 329 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~ 329 (379)
.++..|.+..|.|.|+|++|++|+.++..|.+||||++++.+ ...++|++++++.||.|||+|.|.+... ....|.
T Consensus 6 ~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~ 85 (124)
T cd08387 6 HFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLE 85 (124)
T ss_pred EEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEE
Confidence 345557788999999999999999999889999999999853 3568999999999999999999998642 356899
Q ss_pred EEEEEcccCCCC
Q 017003 330 FEVYIFLLFFPA 341 (379)
Q Consensus 330 i~V~D~d~~~~d 341 (379)
++|||+|.+++|
T Consensus 86 i~V~d~~~~~~~ 97 (124)
T cd08387 86 VLLYDFDQFSRD 97 (124)
T ss_pred EEEEECCCCCCC
Confidence 999999988765
No 36
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.58 E-value=5.5e-15 Score=122.12 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=76.1
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe-----eeEeeeccCCCCCCeEeeEEEEEecC--CCCc
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KETQ 326 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~ 326 (379)
.++..|.+..+.|.|+|++|+||++.+..+.+||||++++.+. .+++|+++++++||+|||+|.|.+.. ....
T Consensus 4 ~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~ 83 (124)
T cd08680 4 QIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQK 83 (124)
T ss_pred EEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcC
Confidence 3456688899999999999999999988889999999998652 37899999999999999999999854 3467
Q ss_pred eEEEEEEEcccCCCC
Q 017003 327 SLIFEVYIFLLFFPA 341 (379)
Q Consensus 327 ~L~i~V~D~d~~~~d 341 (379)
.|.++|||+|.++++
T Consensus 84 ~L~~~V~~~~~~~~~ 98 (124)
T cd08680 84 TLQVDVCSVGPDQQE 98 (124)
T ss_pred EEEEEEEeCCCCCce
Confidence 899999999987665
No 37
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=2.2e-14 Score=118.46 Aligned_cols=99 Identities=27% Similarity=0.355 Sum_probs=82.2
Q ss_pred CcEEEEEEeeccccccccc-CCCCCcEEEEEEcC-eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 017003 263 QGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~-~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~ 340 (379)
.|.|+|+|.+|++|+..+. .+.+||||++.+++ ...++|+++.++.||.|||+|.|.+.. ..+.|.++|||++..++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 4889999999999997663 46789999999987 478999999999999999999999874 47899999999998766
Q ss_pred C--------------------c-EEEcccCCCCceeeEEEEEEEE
Q 017003 341 A--------------------Q-WVPILNSEYGAALSNMHLIYIY 364 (379)
Q Consensus 341 d--------------------~-w~~L~~~~~g~~~g~i~l~~~~ 364 (379)
| . |.++ ...|+..|+++++++|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~--~~~~k~~G~i~~~l~~ 122 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNL--LRNGKPVGELNYDLRF 122 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhh--hcCCccceEEEEEEEe
Confidence 4 2 3334 2467788999888877
No 38
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-15 Score=144.52 Aligned_cols=95 Identities=33% Similarity=0.482 Sum_probs=84.0
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEc
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIF 335 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~ 335 (379)
-....|+|+|.+|+||.++|.+|.||||+++.+-+ ..+++|++++.++||+|||+|.|.+... .++.|.++||||
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 35678999999999999999999999999999865 3578999999999999999999998532 467899999999
Q ss_pred ccCCCC-------------------cEEEcccCCCCcee
Q 017003 336 LLFFPA-------------------QWVPILNSEYGAAL 355 (379)
Q Consensus 336 d~~~~d-------------------~w~~L~~~~~g~~~ 355 (379)
|+.+++ +||.|+++++|+++
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGEyy 295 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGEYY 295 (683)
T ss_pred cccccccccceecccHHHHhhcchhhHHHHhhhhcCcee
Confidence 998774 89999999999975
No 39
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.58 E-value=6.8e-15 Score=123.60 Aligned_cols=88 Identities=24% Similarity=0.143 Sum_probs=75.6
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQS 327 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~ 327 (379)
.++..|.+..+.|.|+|++|+||+..+..|.+||||++++.+. .+++|+++++++||+|||+|.|.+.. .....
T Consensus 5 ~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~ 84 (136)
T cd08406 5 LLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLS 84 (136)
T ss_pred EEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcE
Confidence 3456677889999999999999999998899999999998541 35689999999999999999999854 34678
Q ss_pred EEEEEEEcccCCCC
Q 017003 328 LIFEVYIFLLFFPA 341 (379)
Q Consensus 328 L~i~V~D~d~~~~d 341 (379)
|.++|||+|.++++
T Consensus 85 l~~~V~~~d~~~~~ 98 (136)
T cd08406 85 LRVTVAESTEDGKT 98 (136)
T ss_pred EEEEEEeCCCCCCC
Confidence 99999999988776
No 40
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.57 E-value=3.2e-14 Score=118.34 Aligned_cols=96 Identities=26% Similarity=0.421 Sum_probs=80.3
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC------
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF------ 338 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~------ 338 (379)
.|+|+|++|++|+..|..|.+||||++++++ ..++|+++++++||.|||+|.|.+... ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccc
Confidence 6899999999999999889999999999987 678999999999999999999988654 56899999999852
Q ss_pred -----CCC------------------cEEEcccC-CCCceeeEEEEEE
Q 017003 339 -----FPA------------------QWVPILNS-EYGAALSNMHLIY 362 (379)
Q Consensus 339 -----~~d------------------~w~~L~~~-~~g~~~g~i~l~~ 362 (379)
++| .|++|... ..++..|++++++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEEEC
Confidence 122 79999743 3456788888764
No 41
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.57 E-value=1e-14 Score=120.70 Aligned_cols=87 Identities=26% Similarity=0.294 Sum_probs=73.8
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC---CCCce
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQS 327 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~ 327 (379)
++..|....+.|+|+|++|++|+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+.. .....
T Consensus 7 ~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~ 86 (125)
T cd04031 7 IQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERT 86 (125)
T ss_pred EEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCE
Confidence 44556778899999999999999999888999999999864 357899999999999999999998633 23568
Q ss_pred EEEEEEEcccCCCC
Q 017003 328 LIFEVYIFLLFFPA 341 (379)
Q Consensus 328 L~i~V~D~d~~~~d 341 (379)
|.++|||+|.+++|
T Consensus 87 l~~~V~d~~~~~~~ 100 (125)
T cd04031 87 LEVTVWDYDRDGEN 100 (125)
T ss_pred EEEEEEeCCCCCCC
Confidence 99999999987654
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.57 E-value=1.8e-14 Score=115.66 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=66.6
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL 337 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~ 337 (379)
.|.|+|++|++|+..+..+.+||||++++++ +.++|++++++.||.|||+|.|.+.++..+.|.++|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC
Confidence 3789999999999998889999999999998 78999999999999999999999988767889999999875
No 43
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.56 E-value=1.5e-14 Score=121.67 Aligned_cols=88 Identities=23% Similarity=0.197 Sum_probs=74.7
Q ss_pred ccccccccCCcEEEEEEeeccccccccc--CCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecC--CCC
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KET 325 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~ 325 (379)
.++..|.+..+.|.|+|++|+||...|. .+.+||||++++.+. .+++|+++++++||+|||+|.|.+.. ...
T Consensus 5 ~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~ 84 (138)
T cd08407 5 LLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAA 84 (138)
T ss_pred EEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCc
Confidence 3566688899999999999999999883 345899999998652 36789999999999999999999864 335
Q ss_pred ceEEEEEEEcccCCCC
Q 017003 326 QSLIFEVYIFLLFFPA 341 (379)
Q Consensus 326 ~~L~i~V~D~d~~~~d 341 (379)
..|.++|||+|.++++
T Consensus 85 ~~L~~~V~d~d~~~~~ 100 (138)
T cd08407 85 SSVELEVLNQDSPGQS 100 (138)
T ss_pred cEEEEEEEeCCCCcCc
Confidence 6799999999998876
No 44
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=4.3e-14 Score=116.36 Aligned_cols=89 Identities=30% Similarity=0.428 Sum_probs=77.8
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC--
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-- 341 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-- 341 (379)
|.|+|+|++|++|+..+..+.+||||++++++...++|++++++.||.|||+|.|.+... .+.|.++|||++.+++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 789999999999999998899999999999775678999999999999999999988764 57899999999988765
Q ss_pred -----------------cEEEcccCCCCc
Q 017003 342 -----------------QWVPILNSEYGA 353 (379)
Q Consensus 342 -----------------~w~~L~~~~~g~ 353 (379)
+||.|.+.++++
T Consensus 80 IG~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (120)
T cd04045 80 LGSVEINVSDLIKKNEDGKYVEYDDEEER 108 (120)
T ss_pred eeEEEEeHHHhhCCCCCceEEecCCCcce
Confidence 788887666444
No 45
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.55 E-value=7e-14 Score=117.03 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=66.7
Q ss_pred CcEEEEEEeecccccccccC----------CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 017003 263 QGKVAVTIVKANNLKNMEMI----------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~----------g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V 332 (379)
.|.|+|+|++|++|+..+.. +.+||||++.+++....+|+++++++||.|||+|.|.+.+ ...+.+.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEE
Confidence 58899999999999988863 5789999999988556799999999999999999999973 57899999
Q ss_pred EEcccCCCC
Q 017003 333 YIFLLFFPA 341 (379)
Q Consensus 333 ~D~d~~~~d 341 (379)
||++.+++|
T Consensus 81 ~d~~~~~~~ 89 (132)
T cd04014 81 FHDAAIGPD 89 (132)
T ss_pred EeCCCCCCC
Confidence 999876543
No 46
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.55 E-value=1.7e-14 Score=119.12 Aligned_cols=88 Identities=30% Similarity=0.326 Sum_probs=73.8
Q ss_pred ccccccccCCcEEEEEEeecccccccc-cCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCC--CCc
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQ 326 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~ 326 (379)
.++..|....+.|+|+|++|+||+..+ ..+.+||||++++.+. .+++|++++++.||.|||+|.|.+... ...
T Consensus 4 ~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~ 83 (123)
T cd08521 4 EFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETR 83 (123)
T ss_pred EEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCC
Confidence 345557788999999999999999988 6789999999998531 468999999999999999999988542 356
Q ss_pred eEEEEEEEcccCCCC
Q 017003 327 SLIFEVYIFLLFFPA 341 (379)
Q Consensus 327 ~L~i~V~D~d~~~~d 341 (379)
.|.++|||++.++++
T Consensus 84 ~l~i~v~d~~~~~~~ 98 (123)
T cd08521 84 TLQLSVWHHDRFGRN 98 (123)
T ss_pred EEEEEEEeCCCCcCC
Confidence 899999999987665
No 47
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.55 E-value=2.4e-14 Score=118.46 Aligned_cols=87 Identities=34% Similarity=0.439 Sum_probs=74.1
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIF 330 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i 330 (379)
++..|....+.|+|+|++|+||+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+.. .....|.+
T Consensus 7 ~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 86 (124)
T cd08385 7 FSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVF 86 (124)
T ss_pred EEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEE
Confidence 34446678899999999999999999889999999999864 246799999999999999999999854 23568999
Q ss_pred EEEEcccCCCC
Q 017003 331 EVYIFLLFFPA 341 (379)
Q Consensus 331 ~V~D~d~~~~d 341 (379)
+|||+|.+++|
T Consensus 87 ~V~d~d~~~~~ 97 (124)
T cd08385 87 SVYDFDRFSKH 97 (124)
T ss_pred EEEeCCCCCCC
Confidence 99999988665
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.54 E-value=3.6e-14 Score=114.53 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=66.6
Q ss_pred cEEEEEEeecccccccccC----CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEcccC
Q 017003 264 GKVAVTIVKANNLKNMEMI----GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIFLLF 338 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~----g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~d~~ 338 (379)
|+|.|+|++|++|+..+.. +.+||||++++++ ++++|+++++++||+|||+|.|.+.+. ....|.++|||+|.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 7899999999999987642 3489999999987 678999999999999999999998653 245799999999998
Q ss_pred CCC
Q 017003 339 FPA 341 (379)
Q Consensus 339 ~~d 341 (379)
++|
T Consensus 80 ~~d 82 (108)
T cd04039 80 SFN 82 (108)
T ss_pred CCC
Confidence 776
No 49
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.54 E-value=2.9e-14 Score=115.51 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=66.3
Q ss_pred EEEEEeeccccccccc-CCCCCcEEEEEEcCeeeEeeeccCCCCCCeE-eeEEEEEecCC--CCceEEEEEEEcccCCCC
Q 017003 266 VAVTIVKANNLKNMEM-IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW-NQTFELIAEDK--ETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~-~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~W-ne~f~f~v~~~--~~~~L~i~V~D~d~~~~d 341 (379)
|+|+|++|++|+.++. .|.+||||++++++ .+++|+++++++||.| ||+|.|.+... ..+.|.++|||+|.+++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5899999999999884 68899999999988 7899999999999999 99999998653 246899999999988765
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.53 E-value=3.7e-14 Score=118.12 Aligned_cols=95 Identities=28% Similarity=0.387 Sum_probs=76.5
Q ss_pred ccccccccCCcEEEEEEeecccccccccC-CCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEE-ec--CCCCce
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AE--DKETQS 327 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~-g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~-v~--~~~~~~ 327 (379)
.++..|....+.|+|+|++|+||+..+.. +.+||||++.+.+ .++.||+++++++||.|||+|.|. +. +.....
T Consensus 6 ~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~ 85 (128)
T cd08388 6 FFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLS 85 (128)
T ss_pred EEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCE
Confidence 34555778899999999999999998876 8899999999864 346799999999999999999994 43 223457
Q ss_pred EEEEEEEcccCCCC-----cEEEccc
Q 017003 328 LIFEVYIFLLFFPA-----QWVPILN 348 (379)
Q Consensus 328 L~i~V~D~d~~~~d-----~w~~L~~ 348 (379)
|.++|||+|.+++| ..++|.+
T Consensus 86 L~~~V~d~d~~~~d~~lG~~~i~L~~ 111 (128)
T cd08388 86 LHFAVLSFDRYSRDDVIGEVVCPLAG 111 (128)
T ss_pred EEEEEEEcCCCCCCceeEEEEEeccc
Confidence 99999999998776 3555543
No 51
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=4e-14 Score=119.38 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=76.7
Q ss_pred cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe-----eeEeeeccCCCCCCeEeeEEEEEecC--CCC
Q 017003 253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KET 325 (379)
Q Consensus 253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~ 325 (379)
+.++..|....+.|.|+|++|+||+..+..|.+||||++++.+. .+++|++++++.||+|||+|.|.+.. ...
T Consensus 4 i~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~ 83 (138)
T cd08408 4 LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSE 83 (138)
T ss_pred EEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCc
Confidence 34566788899999999999999999998899999999998641 35799999999999999999999864 345
Q ss_pred ceEEEEEEEcccCCCC
Q 017003 326 QSLIFEVYIFLLFFPA 341 (379)
Q Consensus 326 ~~L~i~V~D~d~~~~d 341 (379)
..|.++|||+|.++++
T Consensus 84 ~~L~~~V~~~~~~~~~ 99 (138)
T cd08408 84 VTLMFSVYNKRKMKRK 99 (138)
T ss_pred cEEEEEEEECCCCCCC
Confidence 6899999999988776
No 52
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=1.1e-13 Score=115.11 Aligned_cols=94 Identities=32% Similarity=0.388 Sum_probs=78.4
Q ss_pred EeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEEEEEEcccCCCC------
Q 017003 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVYIFLLFFPA------ 341 (379)
Q Consensus 270 V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i~V~D~d~~~~d------ 341 (379)
|++|++|+. ..|.+||||+++++. .+++|++++++.||.|||+|.|.+... ..+.|.++|||++..++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence 678999988 678999999999987 578999999999999999999999653 467899999999988764
Q ss_pred --------------cEEEcccCCCCceeeEEEEEEEEEE
Q 017003 342 --------------QWVPILNSEYGAALSNMHLIYIYKY 366 (379)
Q Consensus 342 --------------~w~~L~~~~~g~~~g~i~l~~~~~~ 366 (379)
.|++|.+.......|+++++++|.-
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~ 117 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQP 117 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence 5999975554445788887777753
No 53
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.53 E-value=7.3e-14 Score=114.17 Aligned_cols=95 Identities=23% Similarity=0.376 Sum_probs=77.6
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC--CceEEEEEEEcccCCCC--
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEVYIFLLFFPA-- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~--~~~L~i~V~D~d~~~~d-- 341 (379)
|+|+|++|++|+.. +.+||||.+++++...++|+++++ .||.|||+|.|.+.... ...+.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 789999999998755689999988 99999999999986532 35678888988766543
Q ss_pred ----------------cEEEcccCC-CCceeeEEEEEEEE
Q 017003 342 ----------------QWVPILNSE-YGAALSNMHLIYIY 364 (379)
Q Consensus 342 ----------------~w~~L~~~~-~g~~~g~i~l~~~~ 364 (379)
.|++|...+ .+...|++++.++|
T Consensus 78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 799997543 35668899988876
No 54
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.52 E-value=6.1e-14 Score=116.44 Aligned_cols=85 Identities=28% Similarity=0.328 Sum_probs=72.9
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQS 327 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~ 327 (379)
.++..|....+.|+|+|++|+||+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+.. .....
T Consensus 6 ~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~ 85 (127)
T cd04030 6 QLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRT 85 (127)
T ss_pred EEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCE
Confidence 345557788899999999999999999889999999999864 357899999999999999999999853 23568
Q ss_pred EEEEEEEcccC
Q 017003 328 LIFEVYIFLLF 338 (379)
Q Consensus 328 L~i~V~D~d~~ 338 (379)
|.++|||++.+
T Consensus 86 l~i~v~~~~~~ 96 (127)
T cd04030 86 LDVAVKNSKSF 96 (127)
T ss_pred EEEEEEECCcc
Confidence 99999999875
No 55
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.52 E-value=4.2e-14 Score=116.24 Aligned_cols=78 Identities=22% Similarity=0.446 Sum_probs=66.7
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEc
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIF 335 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~ 335 (379)
...+.|.|+|++|+||++++ .|.+||||++++.+ ..+++|++++++.||.|||+|.|.+... ....+.++|||+
T Consensus 9 ~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 9 GQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred EcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 36799999999999999998 78999999999975 2467899999999999999999998542 235689999999
Q ss_pred ccCC
Q 017003 336 LLFF 339 (379)
Q Consensus 336 d~~~ 339 (379)
|..+
T Consensus 88 ~~~~ 91 (119)
T cd08685 88 LSKS 91 (119)
T ss_pred CCCc
Confidence 8764
No 56
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.52 E-value=1.7e-13 Score=116.39 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=70.2
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
.|.|+|+|++|++|+..+. +.+||||++++++ ++++|++++++.||.|||+|.|.+.++ ...+.++|||+|.+++|
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~d 76 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKD 76 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 3889999999999999887 8899999999987 689999999999999999999999876 77899999999999876
No 57
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=8.9e-14 Score=118.38 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=62.2
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEec---------------CCCCc
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAE---------------DKETQ 326 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~---------------~~~~~ 326 (379)
|+|+|++|++|+. ..|.+||||++++.+. .+++|+++++++||.|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999998 4689999999999752 4679999999999999999999984 12235
Q ss_pred eEEEEEEEcccCCCC
Q 017003 327 SLIFEVYIFLLFFPA 341 (379)
Q Consensus 327 ~L~i~V~D~d~~~~d 341 (379)
.|.++|||++.+++|
T Consensus 80 ~L~i~V~d~~~~~~d 94 (148)
T cd04010 80 ELRVDLWHASMGGGD 94 (148)
T ss_pred EEEEEEEcCCCCCCC
Confidence 799999999987554
No 58
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.50 E-value=9.8e-14 Score=114.90 Aligned_cols=87 Identities=28% Similarity=0.374 Sum_probs=73.3
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC---CCCceEE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLI 329 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~L~ 329 (379)
++..|..+.+.|+|+|++|++|+..+..+.+||||++++.+ ..+.+|++++++.||.|||+|.|.+.. .....|.
T Consensus 7 ~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~ 86 (125)
T cd08386 7 FSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLY 86 (125)
T ss_pred EEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEE
Confidence 45556788999999999999999999889999999999843 356899999999999999999997422 2356799
Q ss_pred EEEEEcccCCCC
Q 017003 330 FEVYIFLLFFPA 341 (379)
Q Consensus 330 i~V~D~d~~~~d 341 (379)
++|||+|.++++
T Consensus 87 ~~v~d~d~~~~~ 98 (125)
T cd08386 87 LQVLDYDRFSRN 98 (125)
T ss_pred EEEEeCCCCcCC
Confidence 999999987665
No 59
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.49 E-value=3.7e-13 Score=111.58 Aligned_cols=77 Identities=29% Similarity=0.327 Sum_probs=67.3
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
.++|+|++|++|+..+..+.+||||++...+ ...++|+++++++||.|||+|.|.+.....+.|.++|||+|..++|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5799999999999999889999999998764 2468999999999999999999999775567899999999987554
No 60
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=1.1e-13 Score=114.69 Aligned_cols=87 Identities=24% Similarity=0.270 Sum_probs=73.3
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEE-ecC--CCCceE
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQSL 328 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~-v~~--~~~~~L 328 (379)
.++..|....+.|.|+|++|+||++.+..|.+||||++.+.+ ..+++|+++++ .||+|||+|.|. +.. .....|
T Consensus 6 ~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L 84 (124)
T cd08389 6 DVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMAL 84 (124)
T ss_pred EEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEE
Confidence 345567788999999999999999999888899999988754 35789999887 999999999998 532 346789
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|.++++
T Consensus 85 ~~~V~~~~~~~~~ 97 (124)
T cd08389 85 RFRLYGVERMRKE 97 (124)
T ss_pred EEEEEECCCcccC
Confidence 9999999988765
No 61
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.48 E-value=6.3e-14 Score=121.38 Aligned_cols=81 Identities=30% Similarity=0.390 Sum_probs=69.4
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEec---CCCCceEEEEEE
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAE---DKETQSLIFEVY 333 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~---~~~~~~L~i~V~ 333 (379)
.+.|.|+|+|++|+||+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+. +.....|.++||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 47899999999999999999889999999998842 35789999999999999999999853 223467999999
Q ss_pred EcccCCCC
Q 017003 334 IFLLFFPA 341 (379)
Q Consensus 334 D~d~~~~d 341 (379)
|+|.+++|
T Consensus 104 d~d~~~~d 111 (162)
T cd04020 104 DHDKLSSN 111 (162)
T ss_pred eCCCCCCC
Confidence 99988765
No 62
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.48 E-value=1.1e-13 Score=116.54 Aligned_cols=88 Identities=32% Similarity=0.411 Sum_probs=74.6
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCce
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS 327 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~ 327 (379)
.++..|.++.|.|+|+|++|++|+.++..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....
T Consensus 5 ~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 84 (136)
T cd08402 5 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVH 84 (136)
T ss_pred EEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCE
Confidence 455667789999999999999999999889999999999853 2357899999999999999999998542 2347
Q ss_pred EEEEEEEcccCCCC
Q 017003 328 LIFEVYIFLLFFPA 341 (379)
Q Consensus 328 L~i~V~D~d~~~~d 341 (379)
|.++|||+|.+++|
T Consensus 85 l~~~v~d~~~~~~~ 98 (136)
T cd08402 85 LIVTVLDYDRIGKN 98 (136)
T ss_pred EEEEEEeCCCCCCC
Confidence 99999999988765
No 63
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.48 E-value=1.2e-13 Score=114.35 Aligned_cols=77 Identities=34% Similarity=0.519 Sum_probs=66.7
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccC-CCCCCeEeeEEEEEecCCC----CceEEEEEEEcccCC
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKE----TQSLIFEVYIFLLFF 339 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~-~tlnP~Wne~f~f~v~~~~----~~~L~i~V~D~d~~~ 339 (379)
+|+|+|++|++|+..+..+.+||||++++++..+++|++.. ++.||.|||+|.|.+.+.. ...|.++|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 47999999999999998899999999999875678898875 5899999999999997653 578999999999866
Q ss_pred CC
Q 017003 340 PA 341 (379)
Q Consensus 340 ~d 341 (379)
+|
T Consensus 81 ~~ 82 (125)
T cd04051 81 GD 82 (125)
T ss_pred CC
Confidence 54
No 64
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.48 E-value=1.5e-13 Score=113.82 Aligned_cols=79 Identities=27% Similarity=0.354 Sum_probs=69.4
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecC-CCCceEEEEEEEcccCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-KETQSLIFEVYIFLLFF 339 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~-~~~~~L~i~V~D~d~~~ 339 (379)
...|.|+|+|++|++|+. +..+.+|||+++++++ .+++|+++++++||.|||+|.|.... ...+.|.++|||+|.++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 678999999999999984 6678899999999987 58999999999999999999997432 34678999999999987
Q ss_pred CC
Q 017003 340 PA 341 (379)
Q Consensus 340 ~d 341 (379)
+|
T Consensus 103 ~d 104 (127)
T cd04032 103 DD 104 (127)
T ss_pred CC
Confidence 76
No 65
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.48 E-value=3.7e-13 Score=110.46 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=61.7
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
+.|.|+|++|++|+..+ ..||||.+.+++ ++.+|++.++ .||.|||+|.|.+.+. ...|.++|||+|.+++|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCC
Confidence 67999999999997654 459999999998 7889998877 4999999999999875 45599999999977554
No 66
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.48 E-value=1.4e-13 Score=115.22 Aligned_cols=87 Identities=26% Similarity=0.302 Sum_probs=74.5
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L 328 (379)
++..|....|.|.|+|++|++|+..+..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....|
T Consensus 4 ~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l 83 (133)
T cd08384 4 VSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83 (133)
T ss_pred EEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEE
Confidence 44557788999999999999999999889999999999864 2468999999999999999999998642 35689
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|..++|
T Consensus 84 ~~~V~d~d~~~~~ 96 (133)
T cd08384 84 EITVWDKDIGKSN 96 (133)
T ss_pred EEEEEeCCCCCCc
Confidence 9999999987655
No 67
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.48 E-value=2.2e-13 Score=113.76 Aligned_cols=93 Identities=33% Similarity=0.516 Sum_probs=80.1
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEEEEEEEccc
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVYIFLL 337 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~i~V~D~d~ 337 (379)
.+.|+|+|++|++|+..+..+.+||||++.+.+ ...++|++++++.||.|||+|.|.+... ..+.|.++|||++.
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 389999999999999988888999999999863 3578999999999999999999998653 24689999999998
Q ss_pred CCCC-------------------cEEEcccCCCCcee
Q 017003 338 FFPA-------------------QWVPILNSEYGAAL 355 (379)
Q Consensus 338 ~~~d-------------------~w~~L~~~~~g~~~ 355 (379)
+++| .||+|.++++|++.
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~~~ 128 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGEYY 128 (131)
T ss_pred CCCcceeEEEEEeHHHhCcCccCceEECcCccccccc
Confidence 7654 69999988888764
No 68
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.47 E-value=3e-13 Score=110.27 Aligned_cols=76 Identities=30% Similarity=0.443 Sum_probs=67.5
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
|+|+|++|++|+..+..+.+||||++.+.+...++|+++.++.||.|||+|.|.+.+...+.+.++|||++.+++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCC
Confidence 5799999999999988889999999999765668999999999999999999998765568899999999987655
No 69
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.47 E-value=2.3e-13 Score=116.35 Aligned_cols=77 Identities=32% Similarity=0.484 Sum_probs=68.6
Q ss_pred ccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----------------------------eeEeeeccCCCCCCe
Q 017003 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----------------------------FKVKTNVVDNNLNPV 311 (379)
Q Consensus 260 ~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----------------------------~~~~T~v~~~tlnP~ 311 (379)
.++.+.|+|+|++|++|.++|..|.+||||++.+.+. ..++|+++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 4789999999999999999999999999999998641 237899999999999
Q ss_pred EeeEEEEEecCCCCceEEEEEEEcc
Q 017003 312 WNQTFELIAEDKETQSLIFEVYIFL 336 (379)
Q Consensus 312 Wne~f~f~v~~~~~~~L~i~V~D~d 336 (379)
|||+|.|.+.+...+.|.++|||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d 128 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD 128 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC
Confidence 9999999997766788999999986
No 70
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.47 E-value=1.6e-13 Score=115.35 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=73.4
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L 328 (379)
++..|.+..|.|+|+|++|++|+..|..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+.. .....|
T Consensus 5 ~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l 84 (135)
T cd08410 5 LSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSL 84 (135)
T ss_pred EEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEE
Confidence 45557788899999999999999999889999999999743 245789999999999999999999853 234479
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|..++|
T Consensus 85 ~~~V~d~d~~~~~ 97 (135)
T cd08410 85 VFTVYGHNVKSSN 97 (135)
T ss_pred EEEEEeCCCCCCC
Confidence 9999999987665
No 71
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.47 E-value=1.9e-13 Score=115.03 Aligned_cols=87 Identities=31% Similarity=0.343 Sum_probs=73.6
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L 328 (379)
++..|.+..+.|.|+|++|+||+..+..|.+||||++++.+ ..+++|++++++.||.|||+|.|.+.. .....|
T Consensus 6 ~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l 85 (136)
T cd08405 6 LSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTL 85 (136)
T ss_pred EEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEE
Confidence 45557788999999999999999999889999999999842 235789999999999999999998753 235689
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|.+++|
T Consensus 86 ~~~v~d~~~~~~~ 98 (136)
T cd08405 86 IITVMDKDRLSRN 98 (136)
T ss_pred EEEEEECCCCCCC
Confidence 9999999988765
No 72
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.47 E-value=2.8e-13 Score=111.84 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=73.1
Q ss_pred cccccccCCcEEEEEEeecccccccc-cCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI 329 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d-~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~ 329 (379)
++..|....+.|.|+|++|++|+..+ ..+.+||||++++.+ ...++|+++++++||.|||+|.|.+... ....|.
T Consensus 5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~ 84 (123)
T cd08390 5 FSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLR 84 (123)
T ss_pred EEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEE
Confidence 45557788999999999999999998 678899999999853 3467899999999999999999998542 245799
Q ss_pred EEEEEcccCCCC
Q 017003 330 FEVYIFLLFFPA 341 (379)
Q Consensus 330 i~V~D~d~~~~d 341 (379)
++|||++..+++
T Consensus 85 i~v~d~~~~~~~ 96 (123)
T cd08390 85 LSVYDVDRFSRH 96 (123)
T ss_pred EEEEECCcCCCC
Confidence 999999987654
No 73
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.46 E-value=3.8e-13 Score=111.87 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=75.7
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCC-CCeEeeEEEEEecCCC-CceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNL-NPVWNQTFELIAEDKE-TQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tl-nP~Wne~f~f~v~~~~-~~~L 328 (379)
+|..|.+..|.|+|+|++|+||++.+..+.+||||++++.. ..+++|+++++++ ||.|||+|.|++.... +-.+
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l 84 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQF 84 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEE
Confidence 56778899999999999999999876556779999998742 3578999999995 6999999999996532 3468
Q ss_pred EEEEEEcccCCCC---cEEEcc
Q 017003 329 IFEVYIFLLFFPA---QWVPIL 347 (379)
Q Consensus 329 ~i~V~D~d~~~~d---~w~~L~ 347 (379)
.++|||+|..+++ +++-|-
T Consensus 85 ~v~v~d~~~~~~n~~IG~v~lG 106 (135)
T cd08692 85 LIKLYSRSSVRRKHFLGQVWIS 106 (135)
T ss_pred EEEEEeCCCCcCCceEEEEEEC
Confidence 8999999987776 566653
No 74
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=3e-13 Score=115.43 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=65.5
Q ss_pred EEEEEEeecccccccccCC--------------CCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCC-CCceEE
Q 017003 265 KVAVTIVKANNLKNMEMIG--------------KSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLI 329 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g--------------~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~-~~~~L~ 329 (379)
.|.|+|++|++|+.+|..+ .+||||++.+++ .+.+|+++++++||+|||+|.|.+..+ ..+.+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 3789999999999988543 689999999998 578999999999999999999987543 356899
Q ss_pred EEEEEcccCCCC
Q 017003 330 FEVYIFLLFFPA 341 (379)
Q Consensus 330 i~V~D~d~~~~d 341 (379)
++|||+|..++|
T Consensus 80 ~~v~D~d~~~~d 91 (151)
T cd04018 80 IQIRDWDRVGND 91 (151)
T ss_pred EEEEECCCCCCC
Confidence 999999998665
No 75
>PLN03008 Phospholipase D delta
Probab=99.45 E-value=4.3e-13 Score=138.63 Aligned_cols=103 Identities=26% Similarity=0.447 Sum_probs=84.3
Q ss_pred CCcEEEEEEeeccccccccc------------------------------------------CCCCCcEEEEEEcCeeeE
Q 017003 262 PQGKVAVTIVKANNLKNMEM------------------------------------------IGKSDPYAVVHIKPLFKV 299 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~------------------------------------------~g~sdPyv~v~~~~~~~~ 299 (379)
-+|.|.++|.+|++|+++|. .++|||||++.+++.+..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 48999999999999886332 236799999999876677
Q ss_pred eeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-------------------cEEEcccCCCCce--eeEE
Q 017003 300 KTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA-------------------QWVPILNSEYGAA--LSNM 358 (379)
Q Consensus 300 ~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d-------------------~w~~L~~~~~g~~--~g~i 358 (379)
||+++++++||+|||+|.|.+.++ ...|.++|||+|.++.| .|++|.+...... .+.+
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 999999999999999999999885 56899999999999876 7999986654433 3466
Q ss_pred EEEEEEE
Q 017003 359 HLIYIYK 365 (379)
Q Consensus 359 ~l~~~~~ 365 (379)
+++++|+
T Consensus 171 ~v~lqf~ 177 (868)
T PLN03008 171 FIDMKFT 177 (868)
T ss_pred EEEEEEE
Confidence 6666666
No 76
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.44 E-value=4.1e-13 Score=112.56 Aligned_cols=85 Identities=27% Similarity=0.399 Sum_probs=72.7
Q ss_pred cccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC------eeeEeeeccCCCCCCeEeeEEEEEecCC----CCc
Q 017003 257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVDNNLNPVWNQTFELIAEDK----ETQ 326 (379)
Q Consensus 257 ~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~------~~~~~T~v~~~tlnP~Wne~f~f~v~~~----~~~ 326 (379)
..|....+.|+|+|++|++|+..+..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ...
T Consensus 9 l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~ 88 (133)
T cd04009 9 AYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGA 88 (133)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCC
Confidence 335567889999999999999998889999999999863 2478999999999999999999998642 356
Q ss_pred eEEEEEEEcccCCCC
Q 017003 327 SLIFEVYIFLLFFPA 341 (379)
Q Consensus 327 ~L~i~V~D~d~~~~d 341 (379)
.|.++|||+|.+++|
T Consensus 89 ~l~~~V~d~d~~~~d 103 (133)
T cd04009 89 LLLFTVKDYDLLGSN 103 (133)
T ss_pred EEEEEEEecCCCCCC
Confidence 899999999988765
No 77
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=4.8e-13 Score=110.77 Aligned_cols=77 Identities=32% Similarity=0.404 Sum_probs=67.4
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCee-eEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF-KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~-~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
+|+|+|++|++|+..|..|.+||||++++++.. ..+|+++++++||.|||+|.|.+..+..+.|.++|||+|.+++|
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~d 78 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSD 78 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 479999999999999988999999999998732 35788888999999999999998766678899999999987655
No 78
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.44 E-value=8.5e-13 Score=109.16 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=67.8
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCC-CCCCeEeeEEEEEecCC---CCceEEEEEEEcccCC
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDK---ETQSLIFEVYIFLLFF 339 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~-tlnP~Wne~f~f~v~~~---~~~~L~i~V~D~d~~~ 339 (379)
|.|+|+|++|++|+..+..+.+||||++++++ ..++|++.++ +.||.|||+|.|.+... ..+.|.++|||++.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 78999999999999999889999999999987 5678888774 89999999999999765 2578999999999886
Q ss_pred CC
Q 017003 340 PA 341 (379)
Q Consensus 340 ~d 341 (379)
+|
T Consensus 80 ~d 81 (124)
T cd04049 80 DD 81 (124)
T ss_pred CC
Confidence 65
No 79
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.43 E-value=3.9e-13 Score=112.78 Aligned_cols=87 Identities=36% Similarity=0.436 Sum_probs=73.9
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L 328 (379)
++..|.+..|.|+|+|++|++|++++..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....|
T Consensus 5 ~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l 84 (134)
T cd08403 5 FSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSL 84 (134)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEE
Confidence 45567788999999999999999999999999999999853 2367899999999999999999987532 23469
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|.+++|
T Consensus 85 ~~~v~d~~~~~~~ 97 (134)
T cd08403 85 IIAVVDYDRVGHN 97 (134)
T ss_pred EEEEEECCCCCCC
Confidence 9999999998776
No 80
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.43 E-value=1.7e-12 Score=107.59 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=64.2
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
..|+|+|.+|+ |...+..+.+||||++++++...++|++++++.||.|||+|.|.+.. .+.|.++|||++..++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 55555578899999999987447999999999999999999999864 57899999999998765
No 81
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.42 E-value=6.8e-13 Score=111.79 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=73.5
Q ss_pred ccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecC--CCCce
Q 017003 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQS 327 (379)
Q Consensus 254 d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~ 327 (379)
.++..|.+..+.|.|+|++|+||+..+ .+.+||||++++.+. .+++|++++++.||.|||+|.|.+.. .....
T Consensus 5 ~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~ 83 (137)
T cd08409 5 QISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTAS 83 (137)
T ss_pred EEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccE
Confidence 345567788999999999999999988 788999999998642 36789999999999999999999853 34568
Q ss_pred EEEEEEEcccCCCC
Q 017003 328 LIFEVYIFLLFFPA 341 (379)
Q Consensus 328 L~i~V~D~d~~~~d 341 (379)
|.++|||++..+++
T Consensus 84 L~~~V~~~~~~~~~ 97 (137)
T cd08409 84 LSLSVMQSGGVRKS 97 (137)
T ss_pred EEEEEEeCCCCCCc
Confidence 99999999987665
No 82
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.42 E-value=9.8e-13 Score=106.66 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=63.8
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC----CceEEEEEEEcccC
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE----TQSLIFEVYIFLLF 338 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~----~~~L~i~V~D~d~~ 338 (379)
.-.|+|+|++|++|+ .|.+||||++++++ ++++|++++++.||.|||+|.|.+..+. ...|.++|||++.+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG-QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC-EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 446899999999998 47899999999997 6789999999999999999999975432 46799999999987
Q ss_pred CCC
Q 017003 339 FPA 341 (379)
Q Consensus 339 ~~d 341 (379)
++|
T Consensus 78 ~~~ 80 (111)
T cd04011 78 RSD 80 (111)
T ss_pred ccC
Confidence 664
No 83
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.42 E-value=6.8e-13 Score=111.63 Aligned_cols=85 Identities=28% Similarity=0.340 Sum_probs=71.9
Q ss_pred cccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEE
Q 017003 257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF 330 (379)
Q Consensus 257 ~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i 330 (379)
..|....+.|.|+|++|++|+..|..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....|.+
T Consensus 8 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~ 87 (136)
T cd08404 8 LCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEF 87 (136)
T ss_pred EEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEE
Confidence 345677899999999999999999889999999999853 1357899999999999999999998542 3457899
Q ss_pred EEEEcccCCCC
Q 017003 331 EVYIFLLFFPA 341 (379)
Q Consensus 331 ~V~D~d~~~~d 341 (379)
+|||+|.++++
T Consensus 88 ~v~d~d~~~~~ 98 (136)
T cd08404 88 LVLDSDRVTKN 98 (136)
T ss_pred EEEECCCCCCC
Confidence 99999988765
No 84
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.41 E-value=1.7e-12 Score=105.26 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=66.9
Q ss_pred cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-------------------
Q 017003 281 MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA------------------- 341 (379)
Q Consensus 281 ~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d------------------- 341 (379)
.+|.+||||.+++++...++|++++++.||.|||+|.|.+.+...+.|.++|||++.++.+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 4688999999999875678999999999999999999999876667899999999987332
Q ss_pred -cEEEcccCCCCceeeEEEEEEEEE
Q 017003 342 -QWVPILNSEYGAALSNMHLIYIYK 365 (379)
Q Consensus 342 -~w~~L~~~~~g~~~g~i~l~~~~~ 365 (379)
.|++|.+ ...|.++++++|+
T Consensus 89 ~~w~~L~~----~~~G~i~~~~~~~ 109 (111)
T cd04052 89 QQWFPLSG----NGQGRIRISALWK 109 (111)
T ss_pred ceeEECCC----CCCCEEEEEEEEe
Confidence 7999964 3467887776664
No 85
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=9.1e-13 Score=130.48 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=93.7
Q ss_pred cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC--eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 017003 253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (379)
Q Consensus 253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~--~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L 328 (379)
+.++..|+.....|.|+|++|++|+.+|..|.+||||++++.+ ..+.+|++.++++||.|||+|.|.+.. ...+.|
T Consensus 156 l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L 235 (421)
T KOG1028|consen 156 LQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVL 235 (421)
T ss_pred EEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEE
Confidence 3456668889999999999999999999767899999999986 357899999999999999999999642 357889
Q ss_pred EEEEEEcccCCCC--------------------cEEEcccCC--CCceeeEEEEEEEEE
Q 017003 329 IFEVYIFLLFFPA--------------------QWVPILNSE--YGAALSNMHLIYIYK 365 (379)
Q Consensus 329 ~i~V~D~d~~~~d--------------------~w~~L~~~~--~g~~~g~i~l~~~~~ 365 (379)
.++|||+|+|+++ .|.++.... ..+..|++.++++|.
T Consensus 236 ~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~ 294 (421)
T KOG1028|consen 236 HLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL 294 (421)
T ss_pred EEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee
Confidence 9999999999886 399987531 222237999988887
No 86
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.40 E-value=1.2e-12 Score=110.25 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=65.1
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecCC---------------CCce
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK---------------ETQS 327 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~~---------------~~~~ 327 (379)
|+|+|++|++|+.+ ..|.+|||++++++. ..+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 778999999999983 4689999999999999999999998654 4568
Q ss_pred EEEEEEEcccCCCC
Q 017003 328 LIFEVYIFLLFFPA 341 (379)
Q Consensus 328 L~i~V~D~d~~~~d 341 (379)
+.++|||++.++++
T Consensus 80 l~i~V~d~~~~~~~ 93 (137)
T cd08675 80 LRVELWHASMVSGD 93 (137)
T ss_pred EEEEEEcCCcCcCC
Confidence 99999999987554
No 87
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.39 E-value=3.3e-12 Score=103.52 Aligned_cols=63 Identities=27% Similarity=0.464 Sum_probs=55.6
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEc
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF 335 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~ 335 (379)
|.|+|.+|+||+ +.+||||++.+.+ ..+.+|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEc
Confidence 579999999995 5689999998864 246899999999999999999999864 67999999998
No 88
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.37 E-value=6.4e-12 Score=107.37 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=59.5
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEE----cCeeeEeeeccCCCCCCeEeeEEEEEecCC--------CCceEEEE
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFELIAEDK--------ETQSLIFE 331 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~----~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~--------~~~~L~i~ 331 (379)
|.|+|....+.+++..+..+.+||||++++ ....+.+|+++++|+||+|||+|.|.+... ....|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444444444444778777788999999987 234689999999999999999999998543 24579999
Q ss_pred EEEcccCC
Q 017003 332 VYIFLLFF 339 (379)
Q Consensus 332 V~D~d~~~ 339 (379)
|||++.+.
T Consensus 84 V~d~~~f~ 91 (155)
T cd08690 84 VYHKGGFL 91 (155)
T ss_pred EEeCCCcc
Confidence 99999863
No 89
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.35 E-value=1.4e-11 Score=104.18 Aligned_cols=101 Identities=12% Similarity=0.203 Sum_probs=77.5
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc-CC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL-FF 339 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~-~~ 339 (379)
+....|.|.|.+|++|+.++ +|||.+.+++....||+++.++.||.|+|+|.|..... ...+.+.||+.+. .+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence 44678999999999998754 89999999996668999999999999999999976543 4679999986553 21
Q ss_pred ---CC--------------------cEEEcccCCCCc---------eeeEEEEEEEEEEe
Q 017003 340 ---PA--------------------QWVPILNSEYGA---------ALSNMHLIYIYKYL 367 (379)
Q Consensus 340 ---~d--------------------~w~~L~~~~~g~---------~~g~i~l~~~~~~~ 367 (379)
+| .||||.+.+.+. ..+.++++++|.-.
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 22 899998665442 22467777766643
No 90
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.35 E-value=9.5e-12 Score=103.20 Aligned_cols=100 Identities=33% Similarity=0.358 Sum_probs=75.6
Q ss_pred EEEEEEeecccccccc--cCCCCCcEEEEEEcC-----eeeEeeeccCCCC-CCeEeeEEEEEecCCCCceEEEEEEEcc
Q 017003 265 KVAVTIVKANNLKNME--MIGKSDPYAVVHIKP-----LFKVKTNVVDNNL-NPVWNQTFELIAEDKETQSLIFEVYIFL 336 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d--~~g~sdPyv~v~~~~-----~~~~~T~v~~~tl-nP~Wne~f~f~v~~~~~~~L~i~V~D~d 336 (379)
.|+|+|++|++|+..+ ..+.+||||++++.. ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999888 578899999999842 2568999887765 9999999999987665567999999999
Q ss_pred cCCCC----------------cEEEcccCCCC-ceeeEEEEEEEE
Q 017003 337 LFFPA----------------QWVPILNSEYG-AALSNMHLIYIY 364 (379)
Q Consensus 337 ~~~~d----------------~w~~L~~~~~g-~~~g~i~l~~~~ 364 (379)
..+.+ .|++|.+.... ...|.+.+.+++
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQGYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCceEEEEecCCCCCCCcceeEEEEEEE
Confidence 87222 67888644322 234555555443
No 91
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.35 E-value=1.6e-11 Score=103.16 Aligned_cols=71 Identities=31% Similarity=0.496 Sum_probs=60.8
Q ss_pred EEEEEEeecccccccccCCCCCcEEEEEEcCe------------eeEeeeccCCCCCCeE-eeEEEEEecCCCCceEEEE
Q 017003 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------FKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE 331 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~------------~~~~T~v~~~tlnP~W-ne~f~f~v~~~~~~~L~i~ 331 (379)
+..|++++|++|+ ++..|++|||+++++.+. ++++|+++++++||.| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 3578999999998 777899999999998541 3689999999999999 9999999853 4689999
Q ss_pred EEEcccC
Q 017003 332 VYIFLLF 338 (379)
Q Consensus 332 V~D~d~~ 338 (379)
|||++..
T Consensus 79 V~D~~~~ 85 (137)
T cd08691 79 VKDKFAK 85 (137)
T ss_pred EEecCCC
Confidence 9998654
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.35 E-value=2.3e-12 Score=144.56 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=82.8
Q ss_pred ccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC-CceEEEEEEEcccC
Q 017003 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVYIFLLF 338 (379)
Q Consensus 260 ~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~-~~~L~i~V~D~d~~ 338 (379)
..-.|.|+|+|++|+||. +..|.+||||++.++++.+.||++++++.||+|||.|.|.+.++. ++++.++|||+|.|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 356899999999999998 447899999999999866889999999999999999999887764 46799999999999
Q ss_pred CCC-------------------cEEEcccCCCCceeeE---EEEEEE
Q 017003 339 FPA-------------------QWVPILNSEYGAALSN---MHLIYI 363 (379)
Q Consensus 339 ~~d-------------------~w~~L~~~~~g~~~g~---i~l~~~ 363 (379)
++| +||+|.+ +|++.|. +.+.++
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~~~~~~~L~~--~~~k~G~~~~~~~e~~ 2098 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGTYSGEYSLNP--ESNKDGSSRTLEIEFQ 2098 (2102)
T ss_pred CCCCCceEEEEHHHHhcCceeeeeeecCc--ccccCCCcceEEEEEE
Confidence 876 8999963 3444444 555443
No 93
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.32 E-value=5.5e-12 Score=105.48 Aligned_cols=87 Identities=30% Similarity=0.297 Sum_probs=72.9
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe----eeEeeeccCCCCCCeEeeEEEEEecCCC--CceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~----~~~~T~v~~~tlnP~Wne~f~f~v~~~~--~~~L 328 (379)
++..|.+..+.|.|+|++|++|+..+..+.+||||++++.+. .+++|+++.++.||.|||+|.|.+.... ...|
T Consensus 5 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l 84 (134)
T cd00276 5 LSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSL 84 (134)
T ss_pred EEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEE
Confidence 344466778999999999999999988889999999998652 3679999999999999999999986532 5789
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||++.++++
T Consensus 85 ~~~v~d~~~~~~~ 97 (134)
T cd00276 85 VITVVDKDSVGRN 97 (134)
T ss_pred EEEEEecCCCCCC
Confidence 9999999976554
No 94
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.30 E-value=1.3e-11 Score=101.99 Aligned_cols=84 Identities=27% Similarity=0.352 Sum_probs=70.4
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC---CCCce
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQS 327 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~---~~~~~ 327 (379)
++..|++..+.|+|+|++|++|++.+..+.+||||++++.+ ...++|++++++.||.|||+|.|.... .....
T Consensus 6 ~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~ 85 (123)
T cd04035 6 FTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKT 85 (123)
T ss_pred EEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCE
Confidence 44557778899999999999999998888999999999843 246899999999999999999986322 23468
Q ss_pred EEEEEEEcccC
Q 017003 328 LIFEVYIFLLF 338 (379)
Q Consensus 328 L~i~V~D~d~~ 338 (379)
+.++|||++.+
T Consensus 86 l~~~v~d~~~~ 96 (123)
T cd04035 86 LRLLVLDEDRF 96 (123)
T ss_pred EEEEEEEcCCc
Confidence 99999999887
No 95
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.28 E-value=2.7e-11 Score=94.52 Aligned_cols=85 Identities=25% Similarity=0.403 Sum_probs=72.5
Q ss_pred HHHHHhHchh-hH-HHHHHHHHHhHHHHHHh-cCCCCcceEEEeEEecCCCCCeeeeeEEEec-CCCeEEEEEEEEEcCC
Q 017003 74 NKELSKLWPF-VA-DAAELVIKESVEPLLEE-YRPPGITSLKFSKLSLGNVAPKIEGIRVQSL-KQGQITMDIDFRWGGD 149 (379)
Q Consensus 74 N~~l~~~Wp~-~~-~~~~~~i~~~l~~~l~~-~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~~-~~~~~~ld~~~~~~g~ 149 (379)
|.++++++-. .+ ++..+.+++.++..|++ .+|+|+++++++++++|+.||.|+++|+.+. .++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 6677776543 33 47889999999999998 4699999999999999999999999999864 4566999999999999
Q ss_pred CcEEEEEEe
Q 017003 150 PSIILGVEA 158 (379)
Q Consensus 150 ~~i~l~~~~ 158 (379)
+.++++++.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 999888765
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.28 E-value=1.3e-11 Score=94.08 Aligned_cols=76 Identities=41% Similarity=0.542 Sum_probs=66.7
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCe--eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~--~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d 341 (379)
|+|+|.+|++|+..+..+..|||+++.+.+. ..++|+++.++.+|.|+|+|.|.+.....+.|.++|||++.+++|
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~ 78 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKD 78 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCC
Confidence 7899999999999888889999999999763 359999999999999999999998766667799999999887643
No 97
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.28 E-value=1.4e-11 Score=101.37 Aligned_cols=72 Identities=35% Similarity=0.402 Sum_probs=62.0
Q ss_pred EeecccccccccCCCCCcEEEEEEcCee------eEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc----CC
Q 017003 270 IVKANNLKNMEMIGKSDPYAVVHIKPLF------KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL----FF 339 (379)
Q Consensus 270 V~~A~~L~~~d~~g~sdPyv~v~~~~~~------~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~----~~ 339 (379)
.++|++|+..+..|++||||++++.+.. .++|+++++++||.|||+|.|.+.....+.+.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999997632 5899999999999999999998754456789999999997 66
Q ss_pred CC
Q 017003 340 PA 341 (379)
Q Consensus 340 ~d 341 (379)
+|
T Consensus 86 ~~ 87 (120)
T cd04048 86 DH 87 (120)
T ss_pred CC
Confidence 65
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.1e-11 Score=120.65 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=86.8
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC-
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP- 340 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~- 340 (379)
=...++++|+.|++|..+|..|+||||+...+++ .++||+++..++||+|||.|.|.+++. ...+++.|||+|..-+
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~k-tkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-TKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecc-cchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHH
Confidence 3567899999999999999999999999999998 689999999999999999999999985 6789999999986411
Q ss_pred ----------------------------CcEEEcccC-CCCceeeEEEEEEEEEEe
Q 017003 341 ----------------------------AQWVPILNS-EYGAALSNMHLIYIYKYL 367 (379)
Q Consensus 341 ----------------------------d~w~~L~~~-~~g~~~g~i~l~~~~~~~ 367 (379)
|-||.|... .+....|.|+|.++...+
T Consensus 371 klrqkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEEEc
Confidence 169999632 234457888888876644
No 99
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.19 E-value=1.2e-10 Score=94.05 Aligned_cols=73 Identities=25% Similarity=0.426 Sum_probs=60.3
Q ss_pred EEeecccccccccCCCCCcEEEEEEcCe-----eeEeeeccCCCCCCeEeeEEEEEecCC----CCceEEEEEEEcccCC
Q 017003 269 TIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAEDK----ETQSLIFEVYIFLLFF 339 (379)
Q Consensus 269 ~V~~A~~L~~~d~~g~sdPyv~v~~~~~-----~~~~T~v~~~tlnP~Wne~f~f~v~~~----~~~~L~i~V~D~d~~~ 339 (379)
-.++|++|+..|..|.+|||+++++.+. ..++|+++++++||.|| +|.|.+.+. ..+.|.++|||+|.++
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 3569999999999999999999998642 35899999999999999 688876432 1578999999999987
Q ss_pred CCc
Q 017003 340 PAQ 342 (379)
Q Consensus 340 ~d~ 342 (379)
+|+
T Consensus 84 ~d~ 86 (110)
T cd04047 84 KHD 86 (110)
T ss_pred CCc
Confidence 763
No 100
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=7.8e-10 Score=109.70 Aligned_cols=87 Identities=36% Similarity=0.426 Sum_probs=75.9
Q ss_pred cccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceE
Q 017003 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (379)
Q Consensus 255 ~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L 328 (379)
++..|.++.|.|+|.|++|+||+.++..+.+||||++++.. ..+++|.+.++++||.|||+|.|.+.. .....+
T Consensus 289 ~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l 368 (421)
T KOG1028|consen 289 LSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSL 368 (421)
T ss_pred EEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEE
Confidence 45568889999999999999999999999999999999743 457899999999999999999998863 334578
Q ss_pred EEEEEEcccCCCC
Q 017003 329 IFEVYIFLLFFPA 341 (379)
Q Consensus 329 ~i~V~D~d~~~~d 341 (379)
.++|||+|.+++.
T Consensus 369 ~l~V~d~d~~~~~ 381 (421)
T KOG1028|consen 369 ELTVWDHDTLGSN 381 (421)
T ss_pred EEEEEEccccccc
Confidence 9999999999887
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=98.99 E-value=3.9e-09 Score=105.45 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=81.6
Q ss_pred cEEEEEEeeccccccc-----ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEE
Q 017003 264 GKVAVTIVKANNLKNM-----EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYI 334 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~-----d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D 334 (379)
..|.|+|+.|++++.. +.....||||++.+.+ ..+++|++..|+.||.|||+|.|.+..++-..|.++|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987511 2234579999999854 245678888889999999999999988877789999999
Q ss_pred cccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 017003 335 FLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY 366 (379)
Q Consensus 335 ~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~ 366 (379)
+|..++| .+++|. .+.|+.....+|.++|++
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~VpL~-~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGIRAVPLY-DERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCceeEecc-CCCcCCCCCceEEEEEEe
Confidence 9987665 789997 456777677888888876
No 102
>PLN02270 phospholipase D alpha
Probab=98.98 E-value=3.1e-09 Score=110.36 Aligned_cols=107 Identities=21% Similarity=0.360 Sum_probs=87.6
Q ss_pred CCcEEEEEEeecccccccc------------------cCCCCCcEEEEEEcCeeeEeeeccCCC-CCCeEeeEEEEEecC
Q 017003 262 PQGKVAVTIVKANNLKNME------------------MIGKSDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAED 322 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d------------------~~g~sdPyv~v~~~~~~~~~T~v~~~t-lnP~Wne~f~f~v~~ 322 (379)
-+|.|.++|.+|++|++.+ ..+.||||+.+.+++....||+++.+. .||.|+|+|.+.+..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 3899999999999998632 124679999999998788999999884 699999999999977
Q ss_pred CCCceEEEEEEEcccCCCC-------------------cEEEcccCCCCceeeEEEEEEEEEEeeE
Q 017003 323 KETQSLIFEVYIFLLFFPA-------------------QWVPILNSEYGAALSNMHLIYIYKYLRI 369 (379)
Q Consensus 323 ~~~~~L~i~V~D~d~~~~d-------------------~w~~L~~~~~g~~~g~i~l~~~~~~~~~ 369 (379)
. ...+.++|.|.|.++.. +|+++.+.+.....+.-+|.++++|+++
T Consensus 86 ~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 86 M-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred C-cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 5 57899999999988763 8999997765555676677777777664
No 103
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-09 Score=107.77 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=88.5
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA- 341 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d- 341 (379)
...|.|+|.+|+||++.+..|.+||||.+.++.....||.++.+++.|-|.|.|.|.+... -+.|.+-|||+| +++|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~ 81 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDD 81 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccccc
Confidence 3468999999999999999999999999999987789999999999999999999998754 578999999999 6665
Q ss_pred -------------------cEEEcccC-CCCceeeEEEEEEEEE
Q 017003 342 -------------------QWVPILNS-EYGAALSNMHLIYIYK 365 (379)
Q Consensus 342 -------------------~w~~L~~~-~~g~~~g~i~l~~~~~ 365 (379)
.|+.|... ...+..|+++|.+.+.
T Consensus 82 ~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~ 125 (800)
T KOG2059|consen 82 IIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALT 125 (800)
T ss_pred ccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEec
Confidence 79999754 3567889999998876
No 104
>PLN02952 phosphoinositide phospholipase C
Probab=98.92 E-value=9.7e-09 Score=104.67 Aligned_cols=104 Identities=21% Similarity=0.319 Sum_probs=83.3
Q ss_pred CcEEEEEEeeccccccc------ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 017003 263 QGKVAVTIVKANNLKNM------EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~------d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V 332 (379)
...|.|+|+.|++++.. +.....||||++.+-+ ..+++|+++.++.||.|||+|.|.+..++-..+.++|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 1123359999998743 3567999999999999999999999877667799999
Q ss_pred EEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEe
Q 017003 333 YIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYL 367 (379)
Q Consensus 333 ~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~ 367 (379)
||+|..+.| .|++|. ...|+..+...|.++|+|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR~VpL~-~~~G~~l~~a~Llv~f~~~ 599 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIRSVPLH-DKKGEKLKNVRLLMRFIFV 599 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCceeEeCc-CCCCCCCCCEEEEEEEEeC
Confidence 999987655 799996 5667778888999998863
No 105
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.90 E-value=1e-08 Score=79.93 Aligned_cols=74 Identities=45% Similarity=0.567 Sum_probs=64.3
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCe--eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF 339 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~--~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~ 339 (379)
+.|+|.+|+++......+..+||+++++.+. ...+|+++.++.||.|||+|.|.+.....+.|.++|||++...
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 6899999999988776567899999999874 4799999999999999999999998755788999999998654
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.89 E-value=4.4e-09 Score=111.16 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=89.9
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~ 340 (379)
.+.|-|.|.+..|.||+..|..|.+||||++.+.....++|+++++|+||+|||.+.+.+.+.....+.+.|+|||.-.+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 46899999999999999999999999999999988668999999999999999999999986557789999999998766
Q ss_pred C-------------------cE-EEcccCCCCceeeEEEEEEEEEEeeE
Q 017003 341 A-------------------QW-VPILNSEYGAALSNMHLIYIYKYLRI 369 (379)
Q Consensus 341 d-------------------~w-~~L~~~~~g~~~g~i~l~~~~~~~~~ 369 (379)
+ .| .+|.++..+...|.++.-+.|+.+.+
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecchhhh
Confidence 4 23 35543334566777777777765444
No 107
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.84 E-value=1.7e-08 Score=83.94 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=62.4
Q ss_pred EEEEEeecccccccc--cCCC--CCcEEEEEEcC--eeeEeeeccCCCCC--CeEeeEEEEEecC---------------
Q 017003 266 VAVTIVKANNLKNME--MIGK--SDPYAVVHIKP--LFKVKTNVVDNNLN--PVWNQTFELIAED--------------- 322 (379)
Q Consensus 266 L~V~V~~A~~L~~~d--~~g~--sdPyv~v~~~~--~~~~~T~v~~~tln--P~Wne~f~f~v~~--------------- 322 (379)
|+|.|.+|++++..+ ..|. +||||+..+.+ ..+++|.++.+++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999965443 4564 99999999876 46799999999999 9999999987644
Q ss_pred --------CCCceEEEEEEEcccCCCC
Q 017003 323 --------KETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 323 --------~~~~~L~i~V~D~d~~~~d 341 (379)
.....|.++|||.|.+++|
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~d 108 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPD 108 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCC
Confidence 1245799999999998776
No 108
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.84 E-value=1.2e-08 Score=80.16 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=62.9
Q ss_pred EEEEEeecccccccc---cCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC-
Q 017003 266 VAVTIVKANNLKNME---MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA- 341 (379)
Q Consensus 266 L~V~V~~A~~L~~~d---~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d- 341 (379)
|.|+|.+|+++...+ .++++|||+.+.++...+.||++ +.||.|||+|.|.+. ....+.+.|||+..-..-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeecc
Confidence 578999999998887 56788999999999977889987 478999999999994 367899999998543221
Q ss_pred ---cEEEcc
Q 017003 342 ---QWVPIL 347 (379)
Q Consensus 342 ---~w~~L~ 347 (379)
-|++|.
T Consensus 76 i~llW~~~s 84 (109)
T cd08689 76 VGLLWLRLS 84 (109)
T ss_pred eeeehhhHH
Confidence 566664
No 109
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.73 E-value=5.9e-08 Score=75.13 Aligned_cols=74 Identities=45% Similarity=0.637 Sum_probs=63.7
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF 339 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~ 339 (379)
|.|++++|+++......+..+||+.+.+.....++|++..++.||.|+|.|.|.+.......+.++|||++...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC
Confidence 46899999999887666789999999998646789999999999999999999987644678999999998764
No 110
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.73 E-value=7.2e-08 Score=98.25 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=80.4
Q ss_pred CcEEEEEEeeccccccc------ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 017003 263 QGKVAVTIVKANNLKNM------EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~------d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V 332 (379)
..+|.|+|+.+++++.. +.....||||++.+-+ ..+++|++..++.||.|||+|.|.+..++-..|+++|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 2223469999999742 2457888889999999999999999887778899999
Q ss_pred EEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 017003 333 YIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY 366 (379)
Q Consensus 333 ~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~ 366 (379)
+|+|...+| ..++|.+ +.|+......|.++|+|
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~L~~-~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIHAVPLFN-RKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccceEeccC-CCcCCCCCCeeEEEEEe
Confidence 999986655 6889974 45666556788888876
No 111
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.68 E-value=1.9e-08 Score=101.31 Aligned_cols=112 Identities=24% Similarity=0.353 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhcccCceEEeeeCCCCcccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe------e
Q 017003 224 DMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------F 297 (379)
Q Consensus 224 ~~i~~~i~~~i~~~~v~P~~~~vpl~~~~~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~------~ 297 (379)
+.|+.+-++-+......-+++-+ ....-.|......|.|.|+.|+++.+.|.+|.|||||++.+++. .
T Consensus 913 ~lIe~fY~d~Lkqq~la~~~fg~------lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~ 986 (1103)
T KOG1328|consen 913 QLIEKFYKDLLKQQALADHQFGV------LSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVP 986 (1103)
T ss_pred HHHHHHHHHHHHHHHHhhCcCCc------eEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccch
Confidence 45555555555544333222210 12233355778899999999999999999999999999999872 4
Q ss_pred eEeeeccCCCCCCeEeeEEEEEecCC----CCceEEEEEEEcccCCCC
Q 017003 298 KVKTNVVDNNLNPVWNQTFELIAEDK----ETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 298 ~~~T~v~~~tlnP~Wne~f~f~v~~~----~~~~L~i~V~D~d~~~~d 341 (379)
.++|+++.+|+||+|+|+|+|.|... +...+.++|+|+|-++.+
T Consensus 987 ~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sN 1034 (1103)
T KOG1328|consen 987 VQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSN 1034 (1103)
T ss_pred hhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceeccc
Confidence 68999999999999999999998542 245689999999988765
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.64 E-value=2.5e-07 Score=94.20 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=78.3
Q ss_pred CcEEEEEEeeccccc----cc--ccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEE
Q 017003 263 QGKVAVTIVKANNLK----NM--EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~----~~--d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V 332 (379)
...|.|+|+.+++++ .. +.....||||++.+-+ ..+++|+++.++.||.|||+|.|.+..++-..+++.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998853 11 1223569999999843 3567899999999999999999998877777899999
Q ss_pred EEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEE
Q 017003 333 YIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKY 366 (379)
Q Consensus 333 ~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~ 366 (379)
+|+|....| ..++|.+. .|+......|.+++++
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V~L~~~-~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIRAFPLHSR-KGEKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccceEEccCC-CcCCCCCeeEEEEEEe
Confidence 999876654 68898754 4544445577777765
No 113
>PLN02228 Phosphoinositide phospholipase C
Probab=98.59 E-value=4.4e-07 Score=92.19 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=79.9
Q ss_pred CcEEEEEEeecccccc---cc---cCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeE-eeEEEEEecCCCCceEEEE
Q 017003 263 QGKVAVTIVKANNLKN---ME---MIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE 331 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~---~d---~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~W-ne~f~f~v~~~~~~~L~i~ 331 (379)
...|+|+|++|++|+. .+ .....||||++.+-+ ..+++|+++.++.||.| ||+|.|.+..++-..|++.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 11 123479999998743 24679999989999999 9999999988777789999
Q ss_pred EEEcccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEee
Q 017003 332 VYIFLLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYLR 368 (379)
Q Consensus 332 V~D~d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~~ 368 (379)
|+|+|..+.| ..++|.+ ..|+......|.+++.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~VpL~~-~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAVRLHD-RAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeEEEccC-CCCCCCCCeEEEEEEEEcC
Confidence 9999876655 6788874 4566655567777777654
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.56 E-value=2.8e-07 Score=94.30 Aligned_cols=103 Identities=26% Similarity=0.339 Sum_probs=84.0
Q ss_pred EEEEEEeecccccccc-cC---CCCCcEEEEEEcC----eeeEeee-ccCCCCCCeEeeEEEEEecCCCCceEEEEEEEc
Q 017003 265 KVAVTIVKANNLKNME-MI---GKSDPYAVVHIKP----LFKVKTN-VVDNNLNPVWNQTFELIAEDKETQSLIFEVYIF 335 (379)
Q Consensus 265 ~L~V~V~~A~~L~~~d-~~---g~sdPyv~v~~~~----~~~~~T~-v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~ 335 (379)
+|.|+|++++++.... .. ..+|||+.+.+-+ ..+.+|+ +..|+.||.|+|+|+|.+..++-.-+++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999765432 22 3579999998754 2467888 566789999999999999998888899999999
Q ss_pred ccCCCC-----------------cEEEcccCCCCceeeEEEEEEEEEEee
Q 017003 336 LLFFPA-----------------QWVPILNSEYGAALSNMHLIYIYKYLR 368 (379)
Q Consensus 336 d~~~~d-----------------~w~~L~~~~~g~~~g~i~l~~~~~~~~ 368 (379)
|..++| .-+||.+ .+|+..-...|.+++++.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~-~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLS-REGEALSSASLFVRIAIVE 745 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeeeecC-CCCccccceeEEEEEEEec
Confidence 998866 6889974 4888888889988888764
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.54 E-value=2.3e-07 Score=91.60 Aligned_cols=101 Identities=24% Similarity=0.419 Sum_probs=84.8
Q ss_pred CcEEEEEEeecccccccccCC-CCCcEEEEEEcCeeeEeeeccCCCCCCeEe-eEEEEEecC--CCCceEEEEEEEcccC
Q 017003 263 QGKVAVTIVKANNLKNMEMIG-KSDPYAVVHIKPLFKVKTNVVDNNLNPVWN-QTFELIAED--KETQSLIFEVYIFLLF 338 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g-~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wn-e~f~f~v~~--~~~~~L~i~V~D~d~~ 338 (379)
-|.|-|+|..|++|+.+|..+ ..|.|+.+.+++ ..++|.+-.+++||.|| +.|.|.+.+ ..+.+|.+++.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 367889999999999999654 569999999998 68999999999999998 568898865 3467899999999988
Q ss_pred CCC------------------------------cEEEcccCCCCceeeEEEEEEEEE
Q 017003 339 FPA------------------------------QWVPILNSEYGAALSNMHLIYIYK 365 (379)
Q Consensus 339 ~~d------------------------------~w~~L~~~~~g~~~g~i~l~~~~~ 365 (379)
+.+ +|+|+.+.-.| .+|+|.+.+...
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg-irgeinvivkvd 136 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG-IRGEINVIVKVD 136 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-ccceeEEEEEEe
Confidence 653 89999987777 578888877665
No 116
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.35 E-value=2.2e-06 Score=86.14 Aligned_cols=233 Identities=16% Similarity=0.265 Sum_probs=151.9
Q ss_pred ccCCCccccCCC-------CcchHHHHHHHHhHchhh------HHHHHHHHHHhHHHHHHhcC-CCCcceEEEeEEecCC
Q 017003 55 GDNFPVWISFPV-------YEQVKWLNKELSKLWPFV------ADAAELVIKESVEPLLEEYR-PPGITSLKFSKLSLGN 120 (379)
Q Consensus 55 ~~~~P~w~~~~d-------~E~~eWlN~~l~~~Wp~~------~~~~~~~i~~~l~~~l~~~~-p~~~~~i~~~~~~lG~ 120 (379)
+.+.|.|+.... .-.|-.+|.+++...... +.++-+.+...++..+.... ..-++.+.+.++-+|.
T Consensus 79 ~~~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~ 158 (1051)
T KOG3532|consen 79 PEELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGT 158 (1051)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcc
Confidence 345788887643 123455666666665431 11222333333334443322 3368999999999999
Q ss_pred CCCeeeeeEEEecC------------C-------------CeEEEEEEEEEcCCCcEEEEEEeeeeeeEEEEEEEEEEEE
Q 017003 121 VAPKIEGIRVQSLK------------Q-------------GQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQVFT 175 (379)
Q Consensus 121 ~pP~i~~ir~~~~~------------~-------------~~~~ld~~~~~~g~~~i~l~~~~~~~~~~~v~v~~~~~~g 175 (379)
+.|.+++.+++..+ + ..+.+=.|+.|.|+..-++++....+..-.+.|+..+++|
T Consensus 159 ~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~G 238 (1051)
T KOG3532|consen 159 KFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTG 238 (1051)
T ss_pred ccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEecc
Confidence 99999999998521 1 1234556889999887777777655555567777888899
Q ss_pred EEEEEEEecCCCCccceEEEEecCCCcceEEEEeeecCcCcccccchHHHHHHHHHHHHhhhcccCceEE--eee-----
Q 017003 176 VIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIV--VPI----- 248 (379)
Q Consensus 176 ~~Rv~l~l~~~~P~~~~v~~sf~~~P~p~idf~l~~~g~~i~~iP~l~~~i~~~i~~~i~~~~v~P~~~~--vpl----- 248 (379)
.+|+.+. ..|+ .+++++|...|.-+.|...+-.|-.+-+ -+.+.|++.++.++.+...|||+-- .|.
T Consensus 239 m~r~~~~---r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~ 312 (1051)
T KOG3532|consen 239 MVRVILS---RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI 312 (1051)
T ss_pred ceeEEEE---eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence 9999983 4555 7889999999755555555443321111 2557788888889999999999732 122
Q ss_pred CCC-CcccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC
Q 017003 249 GGI-PVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP 295 (379)
Q Consensus 249 ~~~-~~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~ 295 (379)
... +.+.+..-..+.|.+.|++.++..|.. ..++..-||.+...+
T Consensus 313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 313 FQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred cccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 111 112222223689999999999887764 457788898887643
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.34 E-value=6.7e-08 Score=97.47 Aligned_cols=77 Identities=25% Similarity=0.482 Sum_probs=65.1
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcC------------------------------eeeEeeeccCCCCCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------------------------------LFKVKTNVVDNNLNP 310 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~------------------------------~~~~~T~v~~~tlnP 310 (379)
+|.-.+.|.+.+|++|.++|..|.||||+...+.+ +-.+-|+++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 45566778889999999999999999999887632 011457888999999
Q ss_pred eEeeEEEEEecCCCCceEEEEEEEccc
Q 017003 311 VWNQTFELIAEDKETQSLIFEVYIFLL 337 (379)
Q Consensus 311 ~Wne~f~f~v~~~~~~~L~i~V~D~d~ 337 (379)
+|+|.|.|.+.|.....+.+.+||+|.
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDD 217 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDD 217 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCc
Confidence 999999999999888899999999995
No 118
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.33 E-value=1.5e-06 Score=88.98 Aligned_cols=77 Identities=29% Similarity=0.347 Sum_probs=64.1
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEEcC-----eeeEeeeccCCCCCCeEe-eEEEEEecCCCCceEEEEEEEccc
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWN-QTFELIAEDKETQSLIFEVYIFLL 337 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~-----~~~~~T~v~~~tlnP~Wn-e~f~f~v~~~~~~~L~i~V~D~d~ 337 (379)
-.|.|.|+.|++|+... .|...||+.+.+-+ ...++|.+..|++||+|| |+|+|.+.+++-..|++.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47889999999999543 34567999998743 345667778899999999 999999999988889999999999
Q ss_pred CCCC
Q 017003 338 FFPA 341 (379)
Q Consensus 338 ~~~d 341 (379)
++..
T Consensus 1144 fs~~ 1147 (1267)
T KOG1264|consen 1144 FSDP 1147 (1267)
T ss_pred cCCc
Confidence 9874
No 119
>PLN02352 phospholipase D epsilon
Probab=98.16 E-value=1.1e-05 Score=84.20 Aligned_cols=104 Identities=15% Similarity=0.243 Sum_probs=73.7
Q ss_pred CCcEEEEEEeeccccccc----ccC-CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 017003 262 PQGKVAVTIVKANNLKNM----EMI-GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFL 336 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~----d~~-g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d 336 (379)
-+|+|.++|.+|+.+... +.. ...|||+.+.+++....|| .+.-||.|+|+|.+.+...-...+.++|.|..
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~~ 84 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTKC 84 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecCC
Confidence 489999999999844322 111 1239999999998777888 55669999999999997753357999998843
Q ss_pred cC-------------C---CCcEEEcccCCCCceeeEEEEEEEEEEeeE
Q 017003 337 LF-------------F---PAQWVPILNSEYGAALSNMHLIYIYKYLRI 369 (379)
Q Consensus 337 ~~-------------~---~d~w~~L~~~~~g~~~g~i~l~~~~~~~~~ 369 (379)
.+ + -++|+++++.+.....| -++.++.+|+++
T Consensus 85 ~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 85 SILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred eEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence 21 1 13899999766555555 555555555554
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.96 E-value=5.1e-06 Score=87.02 Aligned_cols=93 Identities=27% Similarity=0.336 Sum_probs=78.0
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCe-eeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF 339 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~-~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~ 339 (379)
+....++|++++|-+|.+.|..|.+|||+.+.++++ ..-++..+.+++||++.+.|++....+....+.++|||+|.++
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 344578899999999999999999999999999873 2356778899999999999999888777778999999999998
Q ss_pred CC------------cEEEcccCCCCc
Q 017003 340 PA------------QWVPILNSEYGA 353 (379)
Q Consensus 340 ~d------------~w~~L~~~~~g~ 353 (379)
.| +|+...++.-|.
T Consensus 690 ~d~~iget~iDLEnR~~T~~~a~cgl 715 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLTRHRARCGL 715 (1105)
T ss_pred ccchhhceehhhhhcccCcCCcccCc
Confidence 76 677776665554
No 121
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=2e-05 Score=73.52 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=69.1
Q ss_pred cccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEE
Q 017003 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEV 332 (379)
Q Consensus 259 ~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V 332 (379)
|.....-+.|+++.+..|..+|..|.+|||++.++.+ ..+.+|.+.++++||.+|++|.+.+.. .....+.|+|
T Consensus 228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsv 307 (362)
T KOG1013|consen 228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSV 307 (362)
T ss_pred cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEee
Confidence 4456788899999999999999999999999998865 356889999999999999999988753 3356789999
Q ss_pred EEcccCCC
Q 017003 333 YIFLLFFP 340 (379)
Q Consensus 333 ~D~d~~~~ 340 (379)
||++.-+.
T Consensus 308 gd~~~G~s 315 (362)
T KOG1013|consen 308 GDYDIGKS 315 (362)
T ss_pred cccCCCcC
Confidence 99998633
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.51 E-value=0.00013 Score=74.30 Aligned_cols=103 Identities=18% Similarity=0.313 Sum_probs=72.6
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEEcC---eeeEeeeccCCCCCCeEeeEEEEEecCC---------------C
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK---------------E 324 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~---~~~~~T~v~~~tlnP~Wne~f~f~v~~~---------------~ 324 (379)
...+.+.+.+++++-+.+ .+.+|||+++.... ....+|++++.|.+|.|+|.|+|.+... .
T Consensus 130 ~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~ 208 (800)
T KOG2059|consen 130 SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDD 208 (800)
T ss_pred CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCc
Confidence 344556666677666655 35599999998754 2336899999999999999999988532 2
Q ss_pred CceEEEEEEE-cccCCCC--------------------cEEEcccCCCCce------eeEEEEEEEEEE
Q 017003 325 TQSLIFEVYI-FLLFFPA--------------------QWVPILNSEYGAA------LSNMHLIYIYKY 366 (379)
Q Consensus 325 ~~~L~i~V~D-~d~~~~d--------------------~w~~L~~~~~g~~------~g~i~l~~~~~~ 366 (379)
...+++++|| .+....+ .||.|+..+.|+. .|..++.+.|.-
T Consensus 209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 3468899998 4433322 8999986554433 578888887763
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=97.41 E-value=0.00034 Score=72.52 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=60.8
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEE-EEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVV-HIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLFF 339 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v-~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~ 339 (379)
.-.|...+++++|+ ++ ..|||..+ +++. +.+||.+.++|+||+||+...|.+...+.....+.|||++.++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~-~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGE-QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecc-eeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 45899999999997 33 36998665 4565 8999999999999999999999887665566799999999998
Q ss_pred CC
Q 017003 340 PA 341 (379)
Q Consensus 340 ~d 341 (379)
.+
T Consensus 123 ~n 124 (644)
T PLN02964 123 KN 124 (644)
T ss_pred HH
Confidence 76
No 124
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.39 E-value=0.00015 Score=77.32 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=63.3
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEE---ecCCCCceEEEEEEE
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI---AEDKETQSLIFEVYI 334 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~---v~~~~~~~L~i~V~D 334 (379)
..|+|.|-|.-|++|.-..-....||||+.++.+ ..++||+++++|.||.|||..... ......+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 5899999999999996544445689999999976 357899999999999999987654 233445789999999
Q ss_pred cccCCC
Q 017003 335 FLLFFP 340 (379)
Q Consensus 335 ~d~~~~ 340 (379)
.+.+..
T Consensus 1602 ~~~~~e 1607 (1639)
T KOG0905|consen 1602 NGGLLE 1607 (1639)
T ss_pred ccceee
Confidence 887644
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=5.1e-05 Score=70.89 Aligned_cols=88 Identities=30% Similarity=0.354 Sum_probs=70.9
Q ss_pred cccccccccCCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEE--EEEecC-CCC
Q 017003 253 VDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF--ELIAED-KET 325 (379)
Q Consensus 253 ~d~~~l~~~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f--~f~v~~-~~~ 325 (379)
+++..+|+.....+.+++..|++|++++..+..|||++..+++ ..+.+|++..+++||.|+|+- .+...+ ...
T Consensus 82 ~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~ 161 (362)
T KOG1013|consen 82 LEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHL 161 (362)
T ss_pred hhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhh
Confidence 3456778888999999999999999999999999999999876 345788899999999999864 344433 234
Q ss_pred ceEEEEEEEcccCCC
Q 017003 326 QSLIFEVYIFLLFFP 340 (379)
Q Consensus 326 ~~L~i~V~D~d~~~~ 340 (379)
..+.+.|.|.+.+..
T Consensus 162 K~~Rk~vcdn~~~~~ 176 (362)
T KOG1013|consen 162 KVLRKVVCDNDKKTH 176 (362)
T ss_pred hhhheeeccCccccc
Confidence 567889999988764
No 126
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.99 E-value=0.00024 Score=74.91 Aligned_cols=80 Identities=28% Similarity=0.237 Sum_probs=66.0
Q ss_pred cCCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEec---------CCCCceEEEE
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE---------DKETQSLIFE 331 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~---------~~~~~~L~i~ 331 (379)
.....+++.+.+|+.|...|..+.+|||+.+..-+ +.+.|.++.+|+||.|+++..|.-- ......+.++
T Consensus 203 ~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 203 VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 35667899999999999999999999999998887 6889999999999999999877421 1112357899
Q ss_pred EEEcccCCCC
Q 017003 332 VYIFLLFFPA 341 (379)
Q Consensus 332 V~D~d~~~~d 341 (379)
+||.|+.+.+
T Consensus 282 ~yd~dr~g~~ 291 (1105)
T KOG1326|consen 282 VYDLDRSGIN 291 (1105)
T ss_pred eehhhhhchH
Confidence 9999987665
No 127
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.017 Score=58.79 Aligned_cols=73 Identities=36% Similarity=0.477 Sum_probs=56.5
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEE-cC-----eeeEeeeccCCCCCCeEeeEEEEEecCC---CCceEEEEEE
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI-KP-----LFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVY 333 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~-~~-----~~~~~T~v~~~tlnP~Wne~f~f~v~~~---~~~~L~i~V~ 333 (379)
...++|.|+.|.+|+=. .+|.-.||+.+.+ |+ .+++.|+.+.|+..|.+||+|.|.+.+. +.-.|.+.|.
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 44688999999998643 2466789999986 33 4678899999999999999999998653 3446888887
Q ss_pred Ecc
Q 017003 334 IFL 336 (379)
Q Consensus 334 D~d 336 (379)
|+-
T Consensus 1203 DYC 1205 (1283)
T KOG1011|consen 1203 DYC 1205 (1283)
T ss_pred hhe
Confidence 764
No 128
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.22 E-value=0.0078 Score=49.27 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=54.2
Q ss_pred EEEEEeeccccccccc------------C-CCCCcEEEEEEc---CeeeEeeeccCCCCCCeEeeEEEEEec--------
Q 017003 266 VAVTIVKANNLKNMEM------------I-GKSDPYAVVHIK---PLFKVKTNVVDNNLNPVWNQTFELIAE-------- 321 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~------------~-g~sdPyv~v~~~---~~~~~~T~v~~~tlnP~Wne~f~f~v~-------- 321 (379)
|.|.|.+|.+|+.... . -.-++|+++.+. .....+|+++.++.-|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678888888864321 0 124899999854 246789999999999999999999874
Q ss_pred C-------CCCceEEEEEEEcccCCC
Q 017003 322 D-------KETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 322 ~-------~~~~~L~i~V~D~d~~~~ 340 (379)
. .+...+.++||+.+.-+.
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~ 106 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSA 106 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccc
Confidence 1 124468999999775443
No 129
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.011 Score=56.56 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=56.4
Q ss_pred cCCcEEEEEEeecccccccccCC-CCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEE
Q 017003 261 KPQGKVAVTIVKANNLKNMEMIG-KSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVY 333 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~~g-~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~ 333 (379)
...|.+.|.+++|++|..+.-.+ .++||+++++.+ ..+.+|+...+|++|.+.+...|.-.. ....|.+.||
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEEe
Confidence 56899999999999998765332 579999999864 345788888899999777776666443 4678999998
No 130
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.45 E-value=0.026 Score=56.91 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=55.0
Q ss_pred EeecccccccccCCCCCcEEEEEEc--C---eeeEeeeccCCCCCCeEeeEEEEEec----CCCCceEEEEEEEcccCCC
Q 017003 270 IVKANNLKNMEMIGKSDPYAVVHIK--P---LFKVKTNVVDNNLNPVWNQTFELIAE----DKETQSLIFEVYIFLLFFP 340 (379)
Q Consensus 270 V~~A~~L~~~d~~g~sdPyv~v~~~--~---~~~~~T~v~~~tlnP~Wne~f~f~v~----~~~~~~L~i~V~D~d~~~~ 340 (379)
..+|++|.++|.++++|||..++-. . ...++|.+.++++||.|.+ |.+... ......+.+.+||+|..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 4568999999999999999888743 2 3468999999999999988 333332 1235788999999998877
Q ss_pred C
Q 017003 341 A 341 (379)
Q Consensus 341 d 341 (379)
+
T Consensus 221 ~ 221 (529)
T KOG1327|consen 221 H 221 (529)
T ss_pred c
Confidence 3
No 131
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.81 E-value=0.032 Score=42.59 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=54.6
Q ss_pred EEEeecccccccccCCCCCc--EEE--EEEcCeeeEeeeccCCCCCCeEeeEEEEEec--CCCCceEEEEEEEcccCCCC
Q 017003 268 VTIVKANNLKNMEMIGKSDP--YAV--VHIKPLFKVKTNVVDNNLNPVWNQTFELIAE--DKETQSLIFEVYIFLLFFPA 341 (379)
Q Consensus 268 V~V~~A~~L~~~d~~g~sdP--yv~--v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~--~~~~~~L~i~V~D~d~~~~d 341 (379)
++++.++++.-....| -+| |++ +.+.+....+|++.....||++.|+|.|.+. ....-.|.++|+..-. ++.
T Consensus 3 itv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 6788888885443333 234 443 2333335688999999999999999999874 3445678999998322 222
Q ss_pred --cEEEcccCCCC
Q 017003 342 --QWVPILNSEYG 352 (379)
Q Consensus 342 --~w~~L~~~~~g 352 (379)
+|+.|--.+.|
T Consensus 81 ~iG~~sL~l~s~g 93 (103)
T cd08684 81 TIGECSLSLRTLS 93 (103)
T ss_pred eeeEEEeecccCC
Confidence 78877433334
No 132
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=91.93 E-value=0.21 Score=52.86 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=53.1
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEcC------eeeEeeeccC-CCCCCeEeeE-EEEE-ecCCCCceEEEEE
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVD-NNLNPVWNQT-FELI-AEDKETQSLIFEV 332 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~------~~~~~T~v~~-~tlnP~Wne~-f~f~-v~~~~~~~L~i~V 332 (379)
-.+++.|+|++++-|..++ ...||.+.+=+ .+.+||++.. |++||+|+|. |.|. |--++-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 4578999999999987654 45899988732 2457787775 6899999875 6665 2223457899999
Q ss_pred EEccc
Q 017003 333 YIFLL 337 (379)
Q Consensus 333 ~D~d~ 337 (379)
|++..
T Consensus 777 yeEgg 781 (1189)
T KOG1265|consen 777 YEEGG 781 (1189)
T ss_pred eccCC
Confidence 99764
No 133
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.90 E-value=0.32 Score=45.71 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=57.5
Q ss_pred cCCcEEEEEEeeccccccccc--CCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 017003 261 KPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL 337 (379)
Q Consensus 261 ~~~g~L~V~V~~A~~L~~~d~--~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~ 337 (379)
...|+|.+++..+++|+-... .-.-+-||++....+.+.||.+......-.|.|+|+.++.+. ..+.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCc
Confidence 468999999999999975432 224588999999886677777766666678999999988753 567778887764
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=90.86 E-value=2 Score=36.91 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=47.7
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEE
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYI 334 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D 334 (379)
...++|++.++.++...+ .+|-|+.+.+ +.. ....|+.+. ..++.|||...|++ .+ +....|.+++|+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 456789999999887543 4678887754 331 112343333 25799999988876 33 346789999999
Q ss_pred ccc
Q 017003 335 FLL 337 (379)
Q Consensus 335 ~d~ 337 (379)
...
T Consensus 83 ~~~ 85 (158)
T cd08398 83 VKG 85 (158)
T ss_pred Eec
Confidence 764
No 135
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=90.74 E-value=3 Score=40.37 Aligned_cols=96 Identities=11% Similarity=0.213 Sum_probs=67.8
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEec-------CCCCceEEEEEEEcccC
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-------DKETQSLIFEVYIFLLF 338 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~-------~~~~~~L~i~V~D~d~~ 338 (379)
+.+.|.+|+|.+... +..-.+..++.+ ....|..+..+-.|.||......+. ...+.++++++|.-|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng-~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG-ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC-ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 578899999998652 234456667776 6788888888899999998877763 23467899999987721
Q ss_pred C--C------------------------CcEEEcccC--CCCceeeEEEEEEEEE
Q 017003 339 F--P------------------------AQWVPILNS--EYGAALSNMHLIYIYK 365 (379)
Q Consensus 339 ~--~------------------------d~w~~L~~~--~~g~~~g~i~l~~~~~ 365 (379)
. + -.||+|++. +..+.+.++.+.++..
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie 132 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIE 132 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEe
Confidence 1 1 179999977 4444455666666554
No 136
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=89.83 E-value=2.8 Score=36.58 Aligned_cols=73 Identities=27% Similarity=0.335 Sum_probs=48.2
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEE
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYI 334 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D 334 (379)
...++|++.++.++...+ ..++-|+.+.+ +.. ....|+...-+.++.|||...|++ .+ +....|.+++|+
T Consensus 7 ~~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 346799999999987522 33566766543 431 123455444456799999988865 33 346789999998
Q ss_pred ccc
Q 017003 335 FLL 337 (379)
Q Consensus 335 ~d~ 337 (379)
...
T Consensus 85 ~~~ 87 (173)
T cd08693 85 VSK 87 (173)
T ss_pred ecc
Confidence 754
No 137
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=88.67 E-value=1.7 Score=38.40 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=38.7
Q ss_pred eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcccCCCC-------cEEEcccC
Q 017003 297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFLLFFPA-------QWVPILNS 349 (379)
Q Consensus 297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d~~~~d-------~w~~L~~~ 349 (379)
..++|.+...+.+|.|+|++.+.+.. ..+..|.+++++.-.-.+. .|+||.++
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~ 114 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMRE 114 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeeccc
Confidence 35788888889999999999888743 3466788888764332222 59999855
No 138
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.67 E-value=4.3 Score=36.04 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=38.3
Q ss_pred eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcccC-CCC--------cEEEcccC
Q 017003 297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFLLF-FPA--------QWVPILNS 349 (379)
Q Consensus 297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d~~-~~d--------~w~~L~~~ 349 (379)
..++|.+...+.+|.|+|++.+.+.. ..+..|.+++++.-.- .+| .|+||.+.
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~ 116 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQE 116 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeecc
Confidence 46788888888899999999887743 3567899999774321 112 59999843
No 139
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=87.65 E-value=2.9 Score=32.32 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=44.9
Q ss_pred CCCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc--CCCCcEEEccc
Q 017003 283 GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL--FFPAQWVPILN 348 (379)
Q Consensus 283 g~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~--~~~d~w~~L~~ 348 (379)
|.++-.+.+.+++.....|.-.. ..+..|++.|.+.+.. .+.|.|+||-+|. +..-..+.|.+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~RslCav~~lrLEd 71 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDWRSLCAVKFLKLED 71 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecchhhhhheeeEhhh
Confidence 44777888888886667776543 3578999999999874 5789999986654 22335666654
No 140
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.39 E-value=3.8 Score=35.95 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=37.8
Q ss_pred eeEeeeccCCCCCCeEeeEEEEEecCC--CCceEEEEEEEcccCCCC--------cEEEcccCCCCc--eeeEEEEEEE
Q 017003 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVYIFLLFFPA--------QWVPILNSEYGA--ALSNMHLIYI 363 (379)
Q Consensus 297 ~~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i~V~D~d~~~~d--------~w~~L~~~~~g~--~~g~i~l~~~ 363 (379)
..+.|.+..++.+|.|+|++.+.+... ....|.+++++...-.+. .|+||.+ .|. ..|+..|-+.
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~~i~dg~~~L~v~ 135 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGTIIQDGEHELPVY 135 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS-B--SEEEEEEEE
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCeEecCCCEEEEEE
Confidence 457788888889999999999888542 456899999986653321 7999986 454 4666666664
No 141
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=86.25 E-value=0.24 Score=51.82 Aligned_cols=90 Identities=27% Similarity=0.409 Sum_probs=73.0
Q ss_pred cchHHHHHHHHhHchhhHHH--HHHHHHHhHHHHHHhcC-CCCcceEEEeEEecCCCCCeeeeeEEEecCC-CeEEEEEE
Q 017003 68 EQVKWLNKELSKLWPFVADA--AELVIKESVEPLLEEYR-PPGITSLKFSKLSLGNVAPKIEGIRVQSLKQ-GQITMDID 143 (379)
Q Consensus 68 E~~eWlN~~l~~~Wp~~~~~--~~~~i~~~l~~~l~~~~-p~~~~~i~~~~~~lG~~pP~i~~ir~~~~~~-~~~~ld~~ 143 (379)
+.+-|||.++.++.--+.+. ..+...+.++.++...| |++++.+-..+++-|+.||.|++.++..... +..-++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 56789999999988544332 56678888999998876 7799999999999999999999999987544 44568899
Q ss_pred EEEcCCCcEEEEEE
Q 017003 144 FRWGGDPSIILGVE 157 (379)
Q Consensus 144 ~~~~g~~~i~l~~~ 157 (379)
+.|.||..+.++..
T Consensus 414 i~y~~d~~~~i~~~ 427 (795)
T KOG2238|consen 414 IEYRGDLTIIIETR 427 (795)
T ss_pred eeeccccccccccc
Confidence 99999877666544
No 142
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=85.60 E-value=5.7 Score=33.77 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=55.9
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEEc
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYIF 335 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D~ 335 (379)
..++|++....+....+ ....+-|+.+.+ +.. ....|+......++.|||...|.+ .+ +....|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35677787777765411 223566666643 431 123444333346799999988875 33 3467899999998
Q ss_pred ccCCC--C---cEE--EcccCCCCceeeEEEEEE
Q 017003 336 LLFFP--A---QWV--PILNSEYGAALSNMHLIY 362 (379)
Q Consensus 336 d~~~~--d---~w~--~L~~~~~g~~~g~i~l~~ 362 (379)
+..+. + +|. +|.+.+.-=..|...+.+
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~l 120 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNL 120 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcccCcEecCCEEEec
Confidence 76542 2 444 455443222244544444
No 143
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=85.08 E-value=4.8 Score=34.38 Aligned_cols=77 Identities=8% Similarity=0.056 Sum_probs=51.6
Q ss_pred CCcEEEEEEeecccccccccC--CCCCcEEE--EEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCC-------------
Q 017003 262 PQGKVAVTIVKANNLKNMEMI--GKSDPYAV--VHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE------------- 324 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~--g~sdPyv~--v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~------------- 324 (379)
..--|.++|..++-....-.. +..+.-.. +.+++ ++++|+.+..+.+|.++|.|.|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 445678888888765432211 33344444 44566 7999999999999999999999885321
Q ss_pred CceEEEEEEEcccCC
Q 017003 325 TQSLIFEVYIFLLFF 339 (379)
Q Consensus 325 ~~~L~i~V~D~d~~~ 339 (379)
.+.+.+.|.-.|..+
T Consensus 86 ~~pihivli~~d~~~ 100 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSG 100 (156)
T ss_pred CCceEEEEEEecCCC
Confidence 345777777666543
No 144
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.23 E-value=17 Score=30.35 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=39.2
Q ss_pred EeeeccCCC-CCCeEeeEEEEEe--cC-CCCceEEEEEEEcccCCCC-------cEE--EcccCCCCce-eeEEEEEE
Q 017003 299 VKTNVVDNN-LNPVWNQTFELIA--ED-KETQSLIFEVYIFLLFFPA-------QWV--PILNSEYGAA-LSNMHLIY 362 (379)
Q Consensus 299 ~~T~v~~~t-lnP~Wne~f~f~v--~~-~~~~~L~i~V~D~d~~~~d-------~w~--~L~~~~~g~~-~g~i~l~~ 362 (379)
..|+...-+ .++.|||...|.+ .+ +....|.++||+.+....+ +|. +|.+. .|.. .|...|.+
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~-~~~L~~G~~~L~l 98 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY-RGQLRQGPQKLSL 98 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T-TSBBEEEEEEEE-
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC-CCcccCCCEEEEE
Confidence 356555555 7899999988876 33 4567899999998876554 565 45544 3433 46655555
No 145
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.98 E-value=6.8 Score=30.71 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=43.1
Q ss_pred EEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEec--C-CCCceEEEEEEEcc
Q 017003 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVYIFL 336 (379)
Q Consensus 266 L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v~--~-~~~~~L~i~V~D~d 336 (379)
+.+.+...++.........++-|+.+.+ ++. ....|+.+.-...+.|||...|++. + +....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666544332233577877754 331 1234544444556899999888753 3 34678999999864
No 146
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=82.78 E-value=6.7 Score=33.66 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=48.6
Q ss_pred CCCCcEEEEEE--cCe---eeEeeeccCCCCCCeEeeEEEEEec--C-CCCceEEEEEEEcccCCCC-----cEEEcccC
Q 017003 283 GKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVYIFLLFFPA-----QWVPILNS 349 (379)
Q Consensus 283 g~sdPyv~v~~--~~~---~~~~T~v~~~tlnP~Wne~f~f~v~--~-~~~~~L~i~V~D~d~~~~d-----~w~~L~~~ 349 (379)
..+|-|+.+.+ +.. ....|+.+.-+..+.|||...|++. + +.+..|.++|||.+.-++. .-++|.+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677777654 321 1234444444566889999888763 3 3467899999998754333 34466665
Q ss_pred CCCceeeEEEEEEE
Q 017003 350 EYGAALSNMHLIYI 363 (379)
Q Consensus 350 ~~g~~~g~i~l~~~ 363 (379)
+.-=..|...+.+-
T Consensus 108 ~g~Lr~G~~~l~lw 121 (159)
T cd08397 108 DGTLRRGRQKLRVW 121 (159)
T ss_pred CCcEecCCEEEEEE
Confidence 43333555555554
No 147
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=78.85 E-value=10 Score=32.89 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=50.3
Q ss_pred CcEEEEEEeecccccccccCCCCCcEEEEEE--cCe---eeEeeeccC--C--CCCCeEeeEEEEEec--C-CCCceEEE
Q 017003 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVD--N--NLNPVWNQTFELIAE--D-KETQSLIF 330 (379)
Q Consensus 263 ~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~--~~~---~~~~T~v~~--~--tlnP~Wne~f~f~v~--~-~~~~~L~i 330 (379)
...++|+|.++.+++.......+|-|+.+.+ +.. ....|+... + ...+.|||...|.+. + +.+..|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4567899999999987664456788887754 431 112333211 1 235779999888762 3 34678999
Q ss_pred EEEEcccCC
Q 017003 331 EVYIFLLFF 339 (379)
Q Consensus 331 ~V~D~d~~~ 339 (379)
++|+...-+
T Consensus 87 tl~~~~~~~ 95 (171)
T cd04012 87 TLYGTTSSP 95 (171)
T ss_pred EEEEEecCC
Confidence 999876544
No 148
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.09 E-value=2.7 Score=34.38 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 017003 4 ISGVFMGMIFGIALMA 19 (379)
Q Consensus 4 ~~g~~~g~~~~l~l~~ 19 (379)
|+|+++|.+.|+++..
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 4555555555544444
No 149
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=75.89 E-value=2.9 Score=40.96 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=53.9
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEc----CeeeEeeeccCCCCCCeEeeEEEEEecCC-----------CCc
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK----PLFKVKTNVVDNNLNPVWNQTFELIAEDK-----------ETQ 326 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~----~~~~~~T~v~~~tlnP~Wne~f~f~v~~~-----------~~~ 326 (379)
....|.+.|+++.+++.......-|-|+++..- ..++.+|.+++++.+|.++|.|.+.+..- ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 445566777777776543321234667776642 13567899999999999999998887541 123
Q ss_pred eEEEEEEEcccCCC
Q 017003 327 SLIFEVYIFLLFFP 340 (379)
Q Consensus 327 ~L~i~V~D~d~~~~ 340 (379)
.++|++|++..|-+
T Consensus 445 g~kfeifhkggf~r 458 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNR 458 (523)
T ss_pred CeeEEEeecccccc
Confidence 48999999987754
No 150
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=75.77 E-value=8.9 Score=33.59 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=41.7
Q ss_pred cEEEEEEeecccccccccCCCCCcEEEEE--EcCe--eeEeeeccCCCCCCeEeeEEEEEe--cC-CCCceEEEEEEEcc
Q 017003 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVH--IKPL--FKVKTNVVDNNLNPVWNQTFELIA--ED-KETQSLIFEVYIFL 336 (379)
Q Consensus 264 g~L~V~V~~A~~L~~~d~~g~sdPyv~v~--~~~~--~~~~T~v~~~tlnP~Wne~f~f~v--~~-~~~~~L~i~V~D~d 336 (379)
..++|+|.++.++ ..+......-|+.+. .+.. ...+|+....+.++.|||...|++ .+ +....|.++||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 3567788877633 222111222444443 2331 123455555566799999888776 33 34678999999863
No 151
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=73.29 E-value=4.2 Score=41.41 Aligned_cols=41 Identities=34% Similarity=0.362 Sum_probs=34.8
Q ss_pred eEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcccC
Q 017003 298 KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLLF 338 (379)
Q Consensus 298 ~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~ 338 (379)
..+|.++.+.+||.|.+.|.+.......|.++++++|-+.-
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~ 82 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSR 82 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCc
Confidence 45889999999999999988777665678999999998765
No 152
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.43 E-value=5 Score=32.82 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 017003 2 GLISGVFMGMIFGIALMAGWRHMM 25 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~~ 25 (379)
|+++|.+.|++..+++++++.+++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999977666666555544
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=67.19 E-value=22 Score=31.15 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=38.4
Q ss_pred eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcccCCC---C--------cEEEccc
Q 017003 297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFLLFFP---A--------QWVPILN 348 (379)
Q Consensus 297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d~~~~---d--------~w~~L~~ 348 (379)
....|.+...+.+|.|+|++.+.+.- .+...|.++.++-+.-.+ + .|+||..
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 46778888889999999999887753 345679999998443221 1 5999974
No 154
>PRK09458 pspB phage shock protein B; Provisional
Probab=63.26 E-value=18 Score=26.77 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=7.1
Q ss_pred hhhhhcccCCCcc
Q 017003 49 DLKKICGDNFPVW 61 (379)
Q Consensus 49 ~~~~~~~~~~P~w 61 (379)
.+.+++-.+.|.|
T Consensus 60 tLE~ILDae~P~W 72 (75)
T PRK09458 60 ALEAILDAEHPNW 72 (75)
T ss_pred HHHHHHcccCCCc
Confidence 3444555556666
No 155
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=63.17 E-value=26 Score=30.46 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=35.4
Q ss_pred eEeeeccCCCCCCeEeeEEEEEecCC--CCceEEEEEEEcccCCC--C--------cEEEccc
Q 017003 298 KVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVYIFLLFFP--A--------QWVPILN 348 (379)
Q Consensus 298 ~~~T~v~~~tlnP~Wne~f~f~v~~~--~~~~L~i~V~D~d~~~~--d--------~w~~L~~ 348 (379)
.++|-+..+ .+|.|+|++.+.+... ....|.+++++-..-.+ + .|+||.+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 8999999998887432 46789999998664432 2 7999985
No 156
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=63.04 E-value=21 Score=26.47 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=7.0
Q ss_pred hhhhhcccCCCcc
Q 017003 49 DLKKICGDNFPVW 61 (379)
Q Consensus 49 ~~~~~~~~~~P~w 61 (379)
.+.+++..+-|.|
T Consensus 60 tLE~ILdae~P~w 72 (75)
T PF06667_consen 60 TLERILDAEHPNW 72 (75)
T ss_pred HHHHHHcCCCCCc
Confidence 4444555556666
No 157
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=61.98 E-value=22 Score=26.47 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=8.5
Q ss_pred hhhhhhcccCCCcc
Q 017003 48 DDLKKICGDNFPVW 61 (379)
Q Consensus 48 ~~~~~~~~~~~P~w 61 (379)
+.+.+++..+-|.|
T Consensus 59 ~tLE~ILd~e~P~w 72 (75)
T TIGR02976 59 DTLERILDAEHPNW 72 (75)
T ss_pred HHHHHHHcCCCcCc
Confidence 44555666666776
No 158
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=61.39 E-value=2.6 Score=30.09 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 017003 2 GLISGVFMGMIFGIALMAGWRHMM 25 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~~ 25 (379)
|+|+|.+.|+++.++|++++.+++
T Consensus 13 avIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788887777777555543
No 159
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.90 E-value=21 Score=25.45 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 017003 6 GVFMGMIFGIALMA 19 (379)
Q Consensus 6 g~~~g~~~~l~l~~ 19 (379)
.|++|.++|..+.+
T Consensus 27 ~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 27 AFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554333
No 160
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=59.23 E-value=38 Score=29.84 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=31.8
Q ss_pred eeEeeeccCCCCCCeEeeEEEEEecC--CCCceEEEEEEEcc
Q 017003 297 FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVYIFL 336 (379)
Q Consensus 297 ~~~~T~v~~~tlnP~Wne~f~f~v~~--~~~~~L~i~V~D~d 336 (379)
....|.+...+.+|.|.|++.+.+.- .....|.++.|+-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 46778888888999999999887643 34668999999865
No 161
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.03 E-value=11 Score=39.46 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=39.6
Q ss_pred CCCcEEEEEEcCeeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEccc
Q 017003 284 KSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFLL 337 (379)
Q Consensus 284 ~sdPyv~v~~~~~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~ 337 (379)
.-+||+.+.+.-.+...+.+.+.+.+|.|+++|...+.. ...+.+.|+....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSP 78 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCC
Confidence 358998888775444455667789999999999999765 4678888888743
No 162
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=56.47 E-value=14 Score=27.17 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 017003 3 LISGVFMGMIFGIALMAGWR 22 (379)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~~~ 22 (379)
|+.|+++|.++|.++.+++.
T Consensus 1 F~~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 67888888888887766544
No 163
>PF15102 TMEM154: TMEM154 protein family
Probab=54.78 E-value=7 Score=32.84 Aligned_cols=6 Identities=50% Similarity=1.226 Sum_probs=3.8
Q ss_pred HHHHHH
Q 017003 71 KWLNKE 76 (379)
Q Consensus 71 eWlN~~ 76 (379)
.|+|+.
T Consensus 132 kwm~s~ 137 (146)
T PF15102_consen 132 KWMNSM 137 (146)
T ss_pred hHHHhh
Confidence 577764
No 164
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=44.76 E-value=45 Score=21.00 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=6.4
Q ss_pred chhHHHHHHHH
Q 017003 3 LISGVFMGMIF 13 (379)
Q Consensus 3 ~~~g~~~g~~~ 13 (379)
+++|+++|++.
T Consensus 5 lL~GiVlGli~ 15 (37)
T PF02529_consen 5 LLSGIVLGLIP 15 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHHhHH
Confidence 35566666653
No 165
>PF15179 Myc_target_1: Myc target protein 1
Probab=42.19 E-value=21 Score=31.14 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 017003 2 GLISGVFMGMIFGIALMAGWRHM 24 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~ 24 (379)
+|-...++|+++|.++++.+...
T Consensus 24 aF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777755444
No 166
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=40.21 E-value=48 Score=35.98 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=38.8
Q ss_pred CCcEEEEEEcCeeeEeeeccCCC-CCCeEeeEEEEEecCCCCceEEEEEEEcccCC
Q 017003 285 SDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAEDKETQSLIFEVYIFLLFF 339 (379)
Q Consensus 285 sdPyv~v~~~~~~~~~T~v~~~t-lnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~ 339 (379)
+++|+.+.+......+|....+. .+|.|.+.|+...... ...+.+++-+.+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G 192 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPG 192 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCcccc
Confidence 48899998876566777777776 6899999988776553 345666666666544
No 167
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.51 E-value=73 Score=22.55 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=9.5
Q ss_pred chhHHHHHHHHHHHHHH
Q 017003 3 LISGVFMGMIFGIALMA 19 (379)
Q Consensus 3 ~~~g~~~g~~~~l~l~~ 19 (379)
|++|+++|+++++.-..
T Consensus 28 f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSRL 44 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666555555554
No 168
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.17 E-value=27 Score=28.71 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 017003 8 FMGMIFGIALMAG 20 (379)
Q Consensus 8 ~~g~~~~l~l~~~ 20 (379)
+|+++++++++++
T Consensus 4 l~~iii~~i~l~~ 16 (130)
T PF12273_consen 4 LFAIIIVAILLFL 16 (130)
T ss_pred eHHHHHHHHHHHH
Confidence 4555444444443
No 169
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.84 E-value=40 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 017003 4 ISGVFMGMIFGIALMAGWRH 23 (379)
Q Consensus 4 ~~g~~~g~~~~l~l~~~~~~ 23 (379)
++||++|+++|+++.....+
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~ 22 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSS 22 (128)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 56788888877766554333
No 170
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.64 E-value=1.2e+02 Score=25.44 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.5
Q ss_pred HHHHHH
Q 017003 71 KWLNKE 76 (379)
Q Consensus 71 eWlN~~ 76 (379)
+|++.+
T Consensus 97 ~W~~fL 102 (146)
T PF14316_consen 97 AWLQFL 102 (146)
T ss_pred HHHHHH
Confidence 444433
No 171
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=34.58 E-value=99 Score=32.26 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred ccCCCCcchHHHHHHHHhHchhhHHHHHHHHHHhHHHHHHh
Q 017003 62 ISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEE 102 (379)
Q Consensus 62 ~~~~d~E~~eWlN~~l~~~Wp~~~~~~~~~i~~~l~~~l~~ 102 (379)
+.+.+.-.+||.|..+....+- ..+.+.+.+.++.++++
T Consensus 89 i~~~e~~~veW~Npf~~~if~~--~~~~~~~~~~~~~il~~ 127 (655)
T COG3887 89 ILFNETNKVEWVNPFASKIFNK--NEIGESLSELIPEILKQ 127 (655)
T ss_pred EEEcCCCceEEecHHHHHhcCh--hhhhhhHHHHhHHHHHH
Confidence 4566888999999999988753 22234555555555554
No 172
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=34.41 E-value=3e+02 Score=23.61 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCCcEEEEEEcCeeeEeeeccCC--CCCCeEeeEEEEEecCCCCceEEEEEEEcccCCCC----cEEEcc
Q 017003 284 KSDPYAVVHIKPLFKVKTNVVDN--NLNPVWNQTFELIAEDKETQSLIFEVYIFLLFFPA----QWVPIL 347 (379)
Q Consensus 284 ~sdPyv~v~~~~~~~~~T~v~~~--tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d~~~~d----~w~~L~ 347 (379)
+..-|+++.+.++...+|+...- ...=.++|.|.+.+... .+.|.++||......+. -++|+-
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP 104 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVP 104 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCC
Confidence 45678999998877777765533 23346789999998774 57899999998863332 456654
No 173
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=33.37 E-value=82 Score=31.01 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Q 017003 6 GVFMGMIFGIALMAGWRHMMRYRSTKRIAKAA 37 (379)
Q Consensus 6 g~~~g~~~~l~l~~~~~~~~~~~~~~r~~~~~ 37 (379)
.++-.++.|+....+...++-+++++|..+..
T Consensus 177 pliP~~i~Gl~~vl~lA~~lG~kErkRlg~~~ 208 (433)
T COG2851 177 PLIPIQIIGLVLVLALAWLLGKKERKRLGVID 208 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHhhhcc
Confidence 34455555555555555555556677765543
No 174
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=33.00 E-value=48 Score=24.09 Aligned_cols=12 Identities=33% Similarity=1.018 Sum_probs=6.3
Q ss_pred cchhHHHHHHHH
Q 017003 2 GLISGVFMGMIF 13 (379)
Q Consensus 2 ~~~~g~~~g~~~ 13 (379)
|+++|+++|+++
T Consensus 48 GIlYG~viGlli 59 (70)
T TIGR01149 48 GILYGLVIGLIL 59 (70)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 175
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=32.78 E-value=75 Score=20.26 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=8.2
Q ss_pred cchhHHHHHHHHHHHHHH
Q 017003 2 GLISGVFMGMIFGIALMA 19 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~ 19 (379)
|.+.|.+.|+.+...-++
T Consensus 7 aIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMF 24 (38)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344555555554333333
No 176
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=32.16 E-value=44 Score=24.82 Aligned_cols=17 Identities=18% Similarity=0.718 Sum_probs=9.1
Q ss_pred cchhHHHHHHHHHHHHH
Q 017003 2 GLISGVFMGMIFGIALM 18 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l~ 18 (379)
|.++|+++|+++.++..
T Consensus 51 GIlYG~viGlli~~i~~ 67 (77)
T PRK01026 51 GILYGLVIGLLIVLVYI 67 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666655544433
No 177
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=32.07 E-value=46 Score=24.20 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=7.6
Q ss_pred cchhHHHHHHHHHHH
Q 017003 2 GLISGVFMGMIFGIA 16 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~ 16 (379)
|+++|+++|+++.++
T Consensus 48 GIlYG~v~Glii~~~ 62 (70)
T PF04210_consen 48 GILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554433
No 178
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=31.78 E-value=4.9e+02 Score=25.41 Aligned_cols=106 Identities=13% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEcCeeeEeeeccCCCCCCeE--eeEEEEEecCCCCceEEEEEEEcccCC
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW--NQTFELIAEDKETQSLIFEVYIFLLFF 339 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~~~~~~T~v~~~tlnP~W--ne~f~f~v~~~~~~~L~i~V~D~d~~~ 339 (379)
..=-|.|.|.+-.++. ....-|+.+..+. ...+|..+.-+..-.- .+...+.+.. .+.+|++.+|-....+
T Consensus 56 RkF~LLVeI~EI~~i~-----k~khiyIef~~Gr-~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkLvk 128 (508)
T PTZ00447 56 RTFYLLVKINEIFNIN-----KYKHIYIIFSTDK-YDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKLTK 128 (508)
T ss_pred ceeeEEEEehhhhccc-----cceeEEEEEEcCc-eEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccccc
Confidence 3445677777665543 2346788888887 5667755543332222 3333333433 3567888888655433
Q ss_pred ---------------------CCcEEEcccCCCCceeeEEEEEEEEE----EeeEEEEeecc
Q 017003 340 ---------------------PAQWVPILNSEYGAALSNMHLIYIYK----YLRICIYISGG 376 (379)
Q Consensus 340 ---------------------~d~w~~L~~~~~g~~~g~i~l~~~~~----~~~~~~~~~~~ 376 (379)
++.||-+ .+.|+..+.+.||++=- --.-|..|+.|
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c--~kDGq~~cRIqLSFhKL~kya~p~ec~fi~dg 188 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVC--FKDGQEICKVQMSFYKIQKYACPSECMFIQDG 188 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEE--ecCCceeeeEEEEehhhhhccCCcceeEEech
Confidence 3489999 46688888888777532 23457788877
No 179
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=31.50 E-value=79 Score=19.82 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=5.8
Q ss_pred chhHHHHHHH
Q 017003 3 LISGVFMGMI 12 (379)
Q Consensus 3 ~~~g~~~g~~ 12 (379)
++.|+++|++
T Consensus 5 lL~GiVLGli 14 (37)
T CHL00008 5 LLFGIVLGLI 14 (37)
T ss_pred hhhhHHHHhH
Confidence 3556666655
No 180
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=31.46 E-value=75 Score=19.91 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=5.9
Q ss_pred chhHHHHHHH
Q 017003 3 LISGVFMGMI 12 (379)
Q Consensus 3 ~~~g~~~g~~ 12 (379)
++.|+++|++
T Consensus 5 lL~GiVLGli 14 (37)
T PRK00665 5 LLCGIVLGLI 14 (37)
T ss_pred hhhhHHHHhH
Confidence 3556666665
No 181
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.44 E-value=83 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 017003 6 GVFMGMIFGIALMAGWRHMMRY 27 (379)
Q Consensus 6 g~~~g~~~~l~l~~~~~~~~~~ 27 (379)
++++|+++|++.+++|+++-..
T Consensus 24 ~li~gviLg~~~lfGW~ywq~~ 45 (207)
T COG2976 24 ALIVGVILGLGGLFGWRYWQSH 45 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999987543
No 182
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=28.86 E-value=78 Score=23.00 Aligned_cols=16 Identities=25% Similarity=0.758 Sum_probs=8.6
Q ss_pred cchhHHHHHHHHHHHH
Q 017003 2 GLISGVFMGMIFGIAL 17 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l 17 (379)
|+++|+++|+++.+..
T Consensus 51 GILYGlVIGlil~~i~ 66 (75)
T COG4064 51 GILYGLVIGLILCMIY 66 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666665554443
No 183
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=27.89 E-value=31 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred ccCCCccccCCCCcchHHHHHHHHhHchhhHHHHHHHHHHhHHHH
Q 017003 55 GDNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPL 99 (379)
Q Consensus 55 ~~~~P~w~~~~d~E~~eWlN~~l~~~Wp~~~~~~~~~i~~~l~~~ 99 (379)
..++|+|+.-.|.---.-.|.+....|.+.+.+++-.-..+|.++
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 356999999999888889999999999999988773333334443
No 184
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=26.36 E-value=3.8e+02 Score=23.61 Aligned_cols=24 Identities=13% Similarity=0.534 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q 017003 4 ISGVFMGMIFGIALMAGWRHMMRY 27 (379)
Q Consensus 4 ~~g~~~g~~~~l~l~~~~~~~~~~ 27 (379)
+.|.++|+++|+.+...|.++...
T Consensus 4 ~vg~l~al~laf~~~~~~~~~~~a 27 (209)
T PF14023_consen 4 VVGVLFALLLAFTISSAWSRYDNA 27 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999888533
No 185
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=25.91 E-value=27 Score=37.82 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=50.8
Q ss_pred CCcEEEEEEeecccccccccCCCCCcEEEEEEcC----eeeEeeeccCCCCCCeEeeEEEEEecCCCCceEEEEEEEcc
Q 017003 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVYIFL 336 (379)
Q Consensus 262 ~~g~L~V~V~~A~~L~~~d~~g~sdPyv~v~~~~----~~~~~T~v~~~tlnP~Wne~f~f~v~~~~~~~L~i~V~D~d 336 (379)
.-|.+.+.+.+|..+.. ..+-||...+.. ..+.+|+++.++-.|.||+.+++.+.. .+...+..++++
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhccc
Confidence 46889999999988753 346788876542 346789999999999999999887753 455566666655
No 186
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.70 E-value=1.2e+02 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.408 Sum_probs=11.4
Q ss_pred cchhHHHHHHHHHHHHHH
Q 017003 2 GLISGVFMGMIFGIALMA 19 (379)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~ 19 (379)
..+++++.|++.|+++..
T Consensus 2 ~iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIAR 19 (64)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345667777777766554
No 187
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=23.25 E-value=72 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 017003 3 LISGVFMGMIFGIALMAGWRHM 24 (379)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~~~~~ 24 (379)
++.|+++|+++|++.++++.+.
T Consensus 92 lL~G~liGff~g~~~~~~L~~~ 113 (140)
T PF13373_consen 92 LLWGLLIGFFFGLFSLFWLLRE 113 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHhhc
Confidence 5779999999998886655554
No 188
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.31 E-value=1.4e+02 Score=21.68 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 017003 6 GVFMGMIFGIA 16 (379)
Q Consensus 6 g~~~g~~~~l~ 16 (379)
|++.|++++++
T Consensus 37 Gvi~gi~~~~l 47 (68)
T PF04971_consen 37 GVIGGIFFGLL 47 (68)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 189
>PRK11677 hypothetical protein; Provisional
Probab=20.74 E-value=1.3e+02 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 017003 4 ISGVFMGMIFGIALMA 19 (379)
Q Consensus 4 ~~g~~~g~~~~l~l~~ 19 (379)
++||++|+++|.++.-
T Consensus 7 ~i~livG~iiG~~~~R 22 (134)
T PRK11677 7 LIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3466677776665554
No 190
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=20.43 E-value=79 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=22.4
Q ss_pred cCCCCcchHHHHHHHHhHchhhHHHHHHHHH
Q 017003 63 SFPVYEQVKWLNKELSKLWPFVADAAELVIK 93 (379)
Q Consensus 63 ~~~d~E~~eWlN~~l~~~Wp~~~~~~~~~i~ 93 (379)
-|.+.+..+|||.++ ||.+...+.+.+.
T Consensus 74 vf~~~~~~~~L~~i~---hP~v~~~~~~~~~ 101 (194)
T PRK00081 74 VFSDPEARKKLEAIL---HPLIREEILEQLQ 101 (194)
T ss_pred HhCCHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467789999999998 8988887766553
No 191
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=20.13 E-value=6.9e+02 Score=24.96 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=22.0
Q ss_pred eEEEEeeecCcCcccccch-HHHHHHHHHHHHhhhcccC
Q 017003 204 RIDYTLKAVGGSLTAIPGI-ADMIDDTVDSIITDMLQWP 241 (379)
Q Consensus 204 ~idf~l~~~g~~i~~iP~l-~~~i~~~i~~~i~~~~v~P 241 (379)
++||+++.- +. +-+. +.+.+..|++.|++.+++|
T Consensus 332 dld~~~~t~--~~--l~~~a~wl~~~~i~~~i~~~~~~~ 366 (427)
T PF14356_consen 332 DLDFDLDTK--NF--LLKTAAWLLHGRIRKAIEEKLVFD 366 (427)
T ss_pred eeEEEeccc--ch--HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 568887632 21 2233 4456778888888888776
Done!