Query 017005
Match_columns 379
No_of_seqs 25 out of 27
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_O 30S ribosomal protein S 97.3 4E-05 1.4E-09 62.4 0.1 27 350-376 7-33 (88)
2 1a32_A Ribosomal protein S15; 97.2 5E-05 1.7E-09 61.7 0.1 27 350-376 7-33 (88)
3 4a5u_B 30S ribosomal protein S 97.2 5.8E-05 2E-09 61.5 0.1 28 349-376 6-33 (88)
4 2vqe_O 30S ribosomal protein S 97.2 5.6E-05 1.9E-09 61.6 -0.1 27 350-376 8-34 (89)
5 3ulw_A 30S ribosomal protein S 97.1 9.3E-05 3.2E-09 60.8 0.2 28 349-376 10-37 (93)
6 3bbn_O Ribosomal protein S15; 94.9 0.0031 1.1E-07 51.6 -1.1 19 358-376 13-31 (90)
7 3twe_A Alpha4H; unknown functi 84.8 0.53 1.8E-05 31.0 2.2 14 258-271 9-22 (27)
8 3unf_N Proteasome subunit beta 33.5 52 0.0018 27.8 4.8 43 329-375 136-179 (199)
9 4g3b_A Alpha4F3D; alpha helix, 32.6 27 0.00094 22.8 2.2 14 258-271 9-22 (26)
10 1g6u_A Domain swapped dimer; d 31.9 49 0.0017 24.1 3.7 34 254-297 14-47 (48)
11 2jo8_A Serine/threonine-protei 28.6 19 0.00063 27.0 1.0 17 230-246 4-20 (51)
12 1iru_B 20S proteasome; cell cy 27.9 78 0.0027 27.6 5.1 44 328-375 170-213 (233)
13 3bzy_A ESCU; auto cleavage pro 25.6 17 0.00057 27.3 0.3 21 343-363 2-22 (54)
14 1yar_A Proteasome alpha subuni 25.2 99 0.0034 27.0 5.3 43 329-375 174-216 (233)
15 3nzj_H Proteasome component PU 24.7 87 0.003 28.6 5.0 43 329-375 165-208 (261)
16 3euk_L Chromosome partition pr 24.6 76 0.0026 30.0 4.6 113 226-366 90-218 (238)
17 1ryp_I 20S proteasome; multica 23.3 1E+02 0.0035 26.9 5.0 44 328-375 135-179 (222)
18 1j2q_H Proteasome beta subunit 21.7 1.5E+02 0.0051 25.1 5.6 44 328-375 137-181 (202)
19 1iru_I 20S proteasome; cell cy 21.0 1E+02 0.0036 27.2 4.6 43 329-375 136-179 (234)
No 1
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=97.28 E-value=4e-05 Score=62.36 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=24.3
Q ss_pred HHHHHHHhccCcCccCccceeeeeeec
Q 017005 350 LAKVREEFKMSESDCGSARVQSKGFFI 376 (379)
Q Consensus 350 l~kVR~eFkmse~DcGsarVQia~l~~ 376 (379)
-++|.++|+.+|.||||++||||.||.
T Consensus 7 K~~ii~~~~~~~~DtGS~EvQiA~LT~ 33 (88)
T 3r8n_O 7 TAKIVSEFGRDANDTGSTEVQVALLTA 33 (88)
T ss_dssp HHHHHHHHSSSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 467789999999999999999999873
No 2
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=97.22 E-value=5e-05 Score=61.75 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=24.3
Q ss_pred HHHHHHHhccCcCccCccceeeeeeec
Q 017005 350 LAKVREEFKMSESDCGSARVQSKGFFI 376 (379)
Q Consensus 350 l~kVR~eFkmse~DcGsarVQia~l~~ 376 (379)
-+++-++|+.+|.||||++||||.||.
T Consensus 7 K~~ii~~~~~~~~DTGS~EvQIA~LT~ 33 (88)
T 1a32_A 7 KREIIEQFKVHENDTGSPEVQIAILTE 33 (88)
T ss_dssp HHHHHHHTCCSCCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 467789999999999999999999984
No 3
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=97.19 E-value=5.8e-05 Score=61.45 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=24.6
Q ss_pred HHHHHHHHhccCcCccCccceeeeeeec
Q 017005 349 ELAKVREEFKMSESDCGSARVQSKGFFI 376 (379)
Q Consensus 349 el~kVR~eFkmse~DcGsarVQia~l~~ 376 (379)
+-++|-++|+.+|.||||++||||.||.
T Consensus 6 ~K~~ii~~~~~~~~DTGS~EvQiA~LT~ 33 (88)
T 4a5u_B 6 ATAKIVSEFGRDANDTGSTEVQVALLTA 33 (88)
T ss_dssp HHHHHHHHHSSSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 3456789999999999999999999884
No 4
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=97.17 E-value=5.6e-05 Score=61.60 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=24.3
Q ss_pred HHHHHHHhccCcCccCccceeeeeeec
Q 017005 350 LAKVREEFKMSESDCGSARVQSKGFFI 376 (379)
Q Consensus 350 l~kVR~eFkmse~DcGsarVQia~l~~ 376 (379)
-+++-++|+.+|.||||++||||.||.
T Consensus 8 K~~ii~~~~~~~~DTGS~EvQIA~LT~ 34 (89)
T 2vqe_O 8 KQKVIQEFARFPGDTGSTEVQVALLTL 34 (89)
T ss_dssp HHHHHHTTCSSTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 457789999999999999999999984
No 5
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=97.06 E-value=9.3e-05 Score=60.78 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.6
Q ss_pred HHHHHHHHhccCcCccCccceeeeeeec
Q 017005 349 ELAKVREEFKMSESDCGSARVQSKGFFI 376 (379)
Q Consensus 349 el~kVR~eFkmse~DcGsarVQia~l~~ 376 (379)
+-++|-++|+.+|.||||++||||.||.
T Consensus 10 ~K~~ii~~~~~~~~DTGS~EVQIA~LT~ 37 (93)
T 3ulw_A 10 KKAEIVAKFAKKPGDTGSTEVQVALLTA 37 (93)
T ss_dssp HHHHHHHHHCSSTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 3456789999999999999999999984
No 6
>3bbn_O Ribosomal protein S15; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=94.85 E-value=0.0031 Score=51.63 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=16.8
Q ss_pred ccCcCccCccceeeeeeec
Q 017005 358 KMSESDCGSARVQSKGFFI 376 (379)
Q Consensus 358 kmse~DcGsarVQia~l~~ 376 (379)
+.+|.||||++||||.||.
T Consensus 13 ~r~~~DTGS~EVQIA~LT~ 31 (90)
T 3bbn_O 13 EKKEENKGSVEFQVFCFTN 31 (90)
T ss_dssp SCCSSSSCSTTHHHHHHHH
T ss_pred ccCCCCCCChhHHHHHHHH
Confidence 4589999999999999883
No 7
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=84.78 E-value=0.53 Score=31.03 Aligned_cols=14 Identities=50% Similarity=0.769 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHH
Q 017005 258 SLRELNERLMRLRV 271 (379)
Q Consensus 258 SL~ELn~RL~KLre 271 (379)
-|++||+||+|||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 37899999999996
No 8
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=33.49 E-value=52 Score=27.81 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCc-cceeeeeee
Q 017005 329 HLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGS-ARVQSKGFF 375 (379)
Q Consensus 329 ~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGs-arVQia~l~ 375 (379)
.++|+.|.| +|+-+|-.++-+.-++..+ +.||.| ..|+|+-++
T Consensus 136 ~~Le~~~~~-~ms~eea~~la~~al~~~~---~~d~~sg~~i~v~vi~ 179 (199)
T 3unf_N 136 GYVDAAYKP-GMTPEECRRFTTNAITLAM---NRDGSSGGVIYLVTIT 179 (199)
T ss_dssp HHHHHHCCS-SCCHHHHHHHHHHHHHHHH---HHCTTCCSCEEEEEEC
T ss_pred HHHHhhcCC-CCCHHHHHHHHHHHHHHHH---HhccccCCCeEEEEEc
Confidence 478888886 5999999999888887766 467755 678887664
No 9
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=32.58 E-value=27 Score=22.77 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=11.5
Q ss_pred cHHHHHHHHHHHHH
Q 017005 258 SLRELNERLMRLRV 271 (379)
Q Consensus 258 SL~ELn~RL~KLre 271 (379)
-|++.|+||+|.|.
T Consensus 9 eled~qerlrk~rk 22 (26)
T 4g3b_A 9 ELEDXQERLRKXRK 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47888999999885
No 10
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.86 E-value=49 Score=24.13 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCcccHHHHHHHHHHHHHhhhcccCcCCCCcChHHHHHHHHHHH
Q 017005 254 EGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQ 297 (379)
Q Consensus 254 k~WFSL~ELn~RL~KLremE~~e~~s~~~g~~~~~LR~sl~~lk 297 (379)
|+.||-+||-.--..|..+|++ +..|++-|..||
T Consensus 14 kegfspeelaaleselqalekk----------laalksklqalk 47 (48)
T 1g6u_A 14 KEGFSPEELAALESELQALEKK----------LAALKSKLQALK 47 (48)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhc
Confidence 6778888887666666777665 566666555443
No 11
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=28.64 E-value=19 Score=26.98 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=8.8
Q ss_pred hHHHhhcChhHHHHHhh
Q 017005 230 TDFVKMYSFEELGDKLK 246 (379)
Q Consensus 230 ~ef~k~Ys~eELGkKL~ 246 (379)
.+|+|.+|++||..+|.
T Consensus 4 f~fLk~ls~eEL~~rl~ 20 (51)
T 2jo8_A 4 YEFLKSWTVEDLQKRLL 20 (51)
T ss_dssp CGGGGGSCHHHHHHHHH
T ss_pred cHHHHhCCHHHHHHHHH
Confidence 35555555555554443
No 12
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=27.91 E-value=78 Score=27.60 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=33.8
Q ss_pred hHHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCccceeeeeee
Q 017005 328 EHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFF 375 (379)
Q Consensus 328 ~~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGsarVQia~l~ 375 (379)
-.++|++|+| +|+-+|-.++-+.-++... +.|+.+..|.|+-++
T Consensus 170 ~~~Le~~~~~-~ms~eea~~la~~al~~~~---~~d~sg~~i~v~vi~ 213 (233)
T 1iru_B 170 KTFLEKRYNE-DLELEDAIHTAILTLKESF---EGQMTEDNIEVGICN 213 (233)
T ss_dssp HHHHHHHCCT-TCCHHHHHHHHHHHHHTTC---CSCCCSSSEEEEEEE
T ss_pred HHHHHHHhcc-CCCHHHHHHHHHHHHHHHh---hccCCCCCEEEEEEE
Confidence 3588999987 5999999999888887654 556656778887765
No 13
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=25.61 E-value=17 Score=27.34 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhccCcCc
Q 017005 343 AEKMKIELAKVREEFKMSESD 363 (379)
Q Consensus 343 ~Ek~K~el~kVR~eFkmse~D 363 (379)
++++|-..+.|+||||=+|.|
T Consensus 2 ~~~lkMskqEvK~E~Ke~EGd 22 (54)
T 3bzy_A 2 SHMASMSKDEVKREAKDTDGN 22 (54)
T ss_pred chhcCCCHHHHHHHHHhccCC
Confidence 467788889999999999987
No 14
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=25.24 E-value=99 Score=26.96 Aligned_cols=43 Identities=9% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCccceeeeeee
Q 017005 329 HLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFF 375 (379)
Q Consensus 329 ~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGsarVQia~l~ 375 (379)
.++|+.|+| +|+-+|-.++-+.-++... +.||....|.|+-++
T Consensus 174 ~~Le~~~~~-~~s~eea~~la~~al~~~~---~~d~s~~~i~v~vi~ 216 (233)
T 1yar_A 174 SFLEREYKE-NLPEKEAVTLGIKALKSSL---EEGEELKAPEIASIT 216 (233)
T ss_dssp HHHHHHCCT-TCCHHHHHHHHHHHHHHTS---CSSCCCCCCEEEEEE
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHHHh---hccCCCCcEEEEEEE
Confidence 478899987 5999999999888887654 457877788888765
No 15
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=24.67 E-value=87 Score=28.57 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCc-cceeeeeee
Q 017005 329 HLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGS-ARVQSKGFF 375 (379)
Q Consensus 329 ~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGs-arVQia~l~ 375 (379)
.++|++|+| +|+-+|-.++-++-++..+ +.||+| ..|+|+-++
T Consensus 165 ~~Le~~~~~-~ms~eEA~~la~~al~~a~---~rD~~sg~~iev~vI~ 208 (261)
T 3nzj_H 165 AVLESHWKQ-DLTKEEAIKLASDAIQAGI---WNDLGSGSNVDVCVME 208 (261)
T ss_dssp HHHHHHCCS-SCCHHHHHHHHHHHHHHHH---HHCTTCCSCEEEEEEE
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHHHH---hhCCCCCCcEEEEEEE
Confidence 478999987 6999999999888888766 567764 467887665
No 16
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 4.00A {Haemophilus ducreyi}
Probab=24.59 E-value=76 Score=30.03 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=50.6
Q ss_pred hhhhhHHHhhcChhHHHHHhhhcCCCCC--CCcccHHHHHHHHHHHHHhhhcc--cCcCCCCcC------hHHHHHHHHH
Q 017005 226 ERMKTDFVKMYSFEELGDKLKKLRPEGL--EGGFSLRELNERLMRLRVMEMNE--SNSKIGAGT------ISALRSSLAR 295 (379)
Q Consensus 226 e~~~~ef~k~Ys~eELGkKL~~LRP~g~--k~WFSL~ELn~RL~KLremE~~e--~~s~~~g~~------~~~LR~sl~~ 295 (379)
-+|.+.++=-|.| |-|+.. .|||+.+||-+||.-|..-++== ...+-+|.. ...+|.+|.
T Consensus 90 leMlvGkvLc~lY---------LsperLa~~gift~~eL~eeL~~l~dE~kLlkl~~~R~~GSDlD~~kl~ekv~ksLr- 159 (238)
T 3euk_L 90 MEMLVGKVLCYLY---------LSPERLAQQGIFSQDDVYEELLNLADENKLLKAVNPRSTGSDLDRAKLAEKVGGALR- 159 (238)
T ss_dssp HHHHHHHHHHHHH---------TSTTSGGGTTCBCSHHHHHHHHC---------------------CCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH---------cCHHHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHHH-
Confidence 4566666555543 667666 89999999999998554321110 001222211 123333333
Q ss_pred HHHHHHhhhhhhhhhhhhhcC--CCCCcccCCChhHHHhhhcCC----CCCCHHHHHHHHHHHHHHHhccCcCccCc
Q 017005 296 IQIEKEEKARVQRINILEGFG--GTPEYLLHPPKEHLVEKYFHP----DNMSSAEKMKIELAKVREEFKMSESDCGS 366 (379)
Q Consensus 296 lk~~~~~k~s~Q~~~~l~~lg--gtP~ym~~PPk~~Lve~Yfhp----d~mss~Ek~K~el~kVR~eFkmse~DcGs 366 (379)
..+++.++-.+| -+-.|+.-|. |-||+.| |.++.+ .+.=|||.+-+.-.+--+
T Consensus 160 ---------rL~Rlg~I~~~~~~d~~kf~iteA----vfRF~a~vR~~~d~~ea-----q~rlI~dGe~v~~~~~~~ 218 (238)
T 3euk_L 160 ---------RLARIGIITRVGEQNSKKFIISEA----VFRFGADVRAGDDPREV-----QLRLIRDGEATTPTLLTT 218 (238)
T ss_dssp ---------HHHHTTSEEEC------CEEECGG----GTTSCCCCSSSSCCTTH-----HHHHHHC-----------
T ss_pred ---------HHHhcCcEEeecCCCcceEEecHH----HHhhccccccCCCHHHH-----HHHHHhccceecCCCCcc
Confidence 445666666665 3555655443 5566655 444444 677788888776554433
No 17
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=23.33 E-value=1e+02 Score=26.87 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=33.1
Q ss_pred hHHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCc-cceeeeeee
Q 017005 328 EHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGS-ARVQSKGFF 375 (379)
Q Consensus 328 ~~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGs-arVQia~l~ 375 (379)
-.++|+.|+| +|+-+|-.++-++-++..+ +.||.| ..|+|+-++
T Consensus 135 ~~~Le~~~~~-~ms~eeA~~la~~al~~~~---~~d~~sg~~i~v~vi~ 179 (222)
T 1ryp_I 135 MAVLESHWKQ-DLTKEEAIKLASDAIQAGI---WNDLGSGSNVDVCVME 179 (222)
T ss_dssp HHHHHHHCCS-SCCHHHHHHHHHHHHHHHH---HHCTTCCSCEEEEEEE
T ss_pred HHHHHhhCCC-CcCHHHHHHHHHHHHHHHH---hccccCCCcEEEEEEE
Confidence 3678899987 5999999999888887755 457753 457777654
No 18
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=21.73 E-value=1.5e+02 Score=25.07 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=32.3
Q ss_pred hHHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCc-cceeeeeee
Q 017005 328 EHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGS-ARVQSKGFF 375 (379)
Q Consensus 328 ~~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGs-arVQia~l~ 375 (379)
-.++|++|+| +|+-+|-.++-++-++.-.. .||.+ ..|+|+-++
T Consensus 137 ~~~Le~~~~~-~~s~eea~~la~~al~~~~~---~d~~s~~~i~v~vi~ 181 (202)
T 1j2q_H 137 YGVLEDRFTP-EIGVDEAVELAVRAIYSAMK---RDSASGDGIDVVKIT 181 (202)
T ss_dssp HHHHHHHCCT-TCCHHHHHHHHHHHHHHHHT---TCTTSCSCEEEEEEC
T ss_pred HHHHHhhcCC-CcCHHHHHHHHHHHHHHHHh---cCCCCCCcEEEEEEe
Confidence 3588999987 59999999988888876654 56643 347777654
No 19
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=21.05 E-value=1e+02 Score=27.16 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHHhccCcCccCc-cceeeeeee
Q 017005 329 HLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGS-ARVQSKGFF 375 (379)
Q Consensus 329 ~Lve~Yfhpd~mss~Ek~K~el~kVR~eFkmse~DcGs-arVQia~l~ 375 (379)
-++|+.|+| +|+-+|-.++-++-++..+ +.||+| ..|+|+-++
T Consensus 136 ~~Le~~~~~-~ms~eeA~~la~~al~~a~---~~d~~sg~~i~v~vi~ 179 (234)
T 1iru_I 136 AVFEDKFRP-DMEEEEAKNLVSEAIAAGI---FNDLGSGSNIDLCVIS 179 (234)
T ss_dssp HHHHHSCCT-TCCHHHHHTHHHHHHHHHH---HHCTTCCSCEEEEEEE
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHHHHH---HhcccCCCCEEEEEEE
Confidence 588999988 5999999999888887754 567774 568887664
Done!