RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017005
(379 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 2e-11
Identities = 45/337 (13%), Positives = 103/337 (30%), Gaps = 106/337 (31%)
Query: 8 PKHRSLTNPSLIHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSSSS 67
P+ TNP + + + S D +N+ + + + + +++SL P
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---------- 368
Query: 68 SSRGPPSKVASLEEIRR---NLAEFRQRSTVPPPI------ESNSTESQSQSQTQSQSQS 118
E R+ L+ F + +P + + ++
Sbjct: 369 ------------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----------- 405
Query: 119 QHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDP 178
+ +L+K +L K +
Sbjct: 406 --VVVNKLHKY-----SLVEK------------------------QPKEST--------- 425
Query: 179 LSLKNFTNTLRMKPADDNA-HRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYS 237
+S+ + L++K ++ A HR I +P K + + + ++ Y
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIP------------KTFDSDDLIPPYLDQYF 473
Query: 238 FEELGDKLKKLRPEGLEGGFSLRELNERLM--RLRVMEMNESNSKIGAGTISALRSSLAR 295
+ +G LK + F + L+ R + ++R + S T+ L+ +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYK 531
Query: 296 IQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVE 332
I + + +N + F L +E+L+
Sbjct: 532 PYICDNDPKYERLVNAILDF-------LPKIEENLIC 561
Score = 37.9 bits (87), Expect = 0.006
Identities = 53/356 (14%), Positives = 100/356 (28%), Gaps = 99/356 (27%)
Query: 79 LEEIRRNLAEFRQRSTVPPPIESNS------TESQSQSQT--------QSQSQSQHISFQ 124
+ N + + +P I S + S T Q + +
Sbjct: 26 EDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 125 ELYKRNT--VNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDP-LSL 181
E+ + N + + ++ PS + + R R NDN + N V P L L
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ-PS--MMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKL 140
Query: 182 KNFTNTLRMKPADDNA-HRVIG-GSQELPALV------------------FGKEKKEEEK 221
+ L ++PA + V+G G + V E
Sbjct: 141 RQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 222 AVELERMKTDFVKMYS------------FEELGDKLKKLRPEGLEGGFSLRELNERLMRL 269
L+++ ++ + +L++L + L+ L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------LKSKPYENCLLVL 250
Query: 270 RVMEMNESNSKIGAGTISAL----------R-SSLARIQIEKEEKARVQRINILEGFGGT 318
N N+K +A R + + + T
Sbjct: 251 L----NVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMTL--T 299
Query: 319 PE--------YLLHPPKE--HLVEKYFHPDNMSS-AEKMKIELAKVREEFKMSESD 363
P+ YL P++ V +P +S AE ++ LA + +K D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAESIRDGLAT-WDNWKHVNCD 353
Score = 31.0 bits (69), Expect = 0.76
Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 225 LERMKTDFVKMYSFEELGDKLKK-LRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGA 283
L + FV + +++ D K L E ++ ++ +RL +++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 284 GTISALRSS----LARIQIEKEEKARVQRINILEGFGGTPEYLLHPPKEHLVEKYFHPDN 339
LR + ++ I+ E+ + + + T Y+ + + + F N
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMM-----------TRMYIEQRDRLYNDNQVFAKYN 130
Query: 340 MSSAEKM---KIELAKVREE 356
+S + + L ++R
Sbjct: 131 VSRLQPYLKLRQALLELRPA 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 6e-06
Identities = 58/367 (15%), Positives = 101/367 (27%), Gaps = 116/367 (31%)
Query: 37 SNSSLNSYFS---DVKASLRK--QTPPNQTTSSSSSSSRGPPSKVASL---EEIRRNL-- 86
+ F+ ++ L TP S S P V L + L
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS--CPLIGVIQLAHYVVTAKLLGF 258
Query: 87 --AEFRQRSTVPPPIESNSTESQ--------SQSQT-----QSQSQSQHISF------QE 125
E R ++ + SQ +++ + S ++ + F E
Sbjct: 259 TPGELRSY------LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 126 LYKRNTVNETLASKPS----GKPS---------FEAIRESLRQMRARSNNDN-----NNN 167
Y ++ ++ G PS E +++ + + + N
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 168 NRGNGVKNSDPLSLKNFTNTLR-MK-PADDNAHRVIGGSQELPALVFGKE---------- 215
N V + P SL TLR K P+ + R I S+ F
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKL--KFSNRFLPVASPFHS 429
Query: 216 ---KKEEEKAVE-LERMKTDF------VKMYSFEELGDKLKKLRPEGLEGGFSLRELNER 265
+ + L + F + +Y + G L+ L E + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISE------RIVDC 482
Query: 266 LMRLRV---MEMNESNSKI---GAGTISALRSSLARIQIEKEEKARVQRINILEGFG--- 316
++RL V + I G G S L L R +G G
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGASGL-GVL------------THR--NKDGTGVRV 527
Query: 317 ---GTPE 320
GT +
Sbjct: 528 IVAGTLD 534
Score = 45.4 bits (107), Expect = 3e-05
Identities = 59/409 (14%), Positives = 127/409 (31%), Gaps = 121/409 (29%)
Query: 19 IHLFSTSQNDNNDNNNNYSNSSLNSYFSDVKASLRKQTPPNQTTSSS--SSSSRGPPSKV 76
IH + ND + + +Y + + R P ++ ++S+ + G +++
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEG-NAQL 156
Query: 77 AS-----------LEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQSQSQHISFQE 125
+ EE+ R+L + T + S ++T S+ + ++
Sbjct: 157 VAIFGGQGNTDDYFEEL-RDLYQ-----TYHVLVGDLIKFS---AETLSELIRTTLDAEK 207
Query: 126 LYKRN-TVNETLASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPL----S 180
++ + + E L PS P + + + S PL
Sbjct: 208 VFTQGLNILEWL-ENPSNTPDKDYLLSIP-------------------I--SCPLIGVIQ 245
Query: 181 LKNFTNTLR---MKPAD--DNAHRVIGGSQELP-ALVFGKEKKEEE------KAVELERM 228
L ++ T + P + G SQ L A+ + E KA+ +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-- 303
Query: 229 KTDF------VKMYSFEELGDKLKKLRPEGLEGG----FSLRELNERLMRLRVMEMNES- 277
F + Y L + + E EG S+ L + ++ V + N
Sbjct: 304 ---FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 278 --NSKIG------------AGTISALRS---SLARIQIE-KEEKARV---QR-INILEGF 315
++ +G +L +L + + +++R+ +R + F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 316 G--GTPEYLLHPPKEHLVEKYFHPDNMSSA-EKMKIELAKVREEFKMSE 361
+P FH + A + + +L K F +
Sbjct: 421 LPVASP---------------FHSHLLVPASDLINKDLVKNNVSFNAKD 454
Score = 44.7 bits (105), Expect = 4e-05
Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 103/288 (35%)
Query: 121 ISFQELYKRNTVNET-LASKPSGKPSFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPL 179
S ++ N VN T GK IRE+ M + D
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGK----RIRENYSAMIFETIVDGK------------LK 1702
Query: 180 SLKNFTNTLRMKPADDNAHRVI-GGSQEL--------PALVFGKEKKEEEKAVE---LER 227
+ K F K ++++ + L PAL +E E
Sbjct: 1703 TEKIF------KEINEHSTSYTFRSEKGLLSATQFTQPALT----------LMEKAAFED 1746
Query: 228 MKTDFVKM------------YS----------FEELGDKLKKLRPEGLEGGFSLRELNER 265
+K+ + Y+ E L ++ R G +++ R
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV-EVVFYR------GMTMQVAVPR 1799
Query: 266 LMRLRVMEMNESNSKIGA---GTISAL--RSSLARI--QIEKEEKARVQRINI-LEGF-- 315
E+ SN + A G ++A + +L + ++ K V+ +N +E
Sbjct: 1800 D------ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 316 --GGTPEYLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSE 361
G L + + ++ + KI++ ++++ + E
Sbjct: 1854 VAAGDLRAL-----DTVTNV------LNFIKLQKIDIIELQKSLSLEE 1890
Score = 33.9 bits (77), Expect = 0.10
Identities = 51/314 (16%), Positives = 91/314 (28%), Gaps = 95/314 (30%)
Query: 1 MALHLFK--PKHRSLTNPSLIHLFST---SQNDNNDNNNNYSNSSLNSYFSDVKA-SLRK 54
M + L+K + + N + H T S D NN +L +F K +R+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV----NLTIHFGGEKGKRIRE 1686
Query: 55 QTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIES-NSTESQSQSQTQ 113
N + + G +EI + + T ++T+ TQ
Sbjct: 1687 ----NYSAMIFETIVDGKLKTEKIFKEINEHSTSY----TFRSEKGLLSATQF-----TQ 1733
Query: 114 ------SQSQSQHISFQELYKRNTVNET-------------LASKPSGKPSFE-AIR--- 150
++ F++L + + LAS + S E +
Sbjct: 1734 PALTLMEKAA-----FEDLKSKGLIPADATFAGHSLGEYAALAS-LADVMSIESLVEVVF 1787
Query: 151 --------ESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMK------PADDN 196
R RSN N G + +L+ + + + N
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 197 AHR---VIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGL 253
V G +L AL + + +F+K L+K+ L
Sbjct: 1848 VENQQYVAAG--DLRAL---------DTVTNV----LNFIK----------LQKIDIIEL 1882
Query: 254 EGGFSLRELNERLM 267
+ SL E+ L
Sbjct: 1883 QKSLSLEEVEGHLF 1896
Score = 29.2 bits (65), Expect = 3.0
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 34/166 (20%)
Query: 11 RSLT--NPSLIHLFSTSQNDNNDNNNNYSNSS-LNSYF-SDVKASLRKQTPPNQTTSSSS 66
R LT + SL H+ ++ +S L F + ++ T+ +
Sbjct: 7 RPLTLSHGSLEHVLLVP-------TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 67 --------SSSRGPPSKVASLEEI-RRNLAEFRQRSTVPPPIESNS----TESQSQSQTQ 113
SS PSKV +++ L EF +E N Q
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-----LEGNDIHALAAKLLQENDT 114
Query: 114 SQSQSQHISFQELYKRNTVNETLASKPSGKPSFEAIRESLRQMRAR 159
+ +++ + + + A +P K S A+ ++ + A+
Sbjct: 115 TLVKTKEL-IKNYITARIM----AKRPFDKKSNSALFRAVGEGNAQ 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.016
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 20/46 (43%)
Query: 180 SLKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKA-VE 224
+LK +L++ ADD+A PAL KA +E
Sbjct: 21 ALKKLQASLKLY-ADDSA----------PALAI--------KATME 47
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 31.4 bits (72), Expect = 0.48
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 230 TDFVK--MYSFEELGDKLKKLRPEG 252
TD V+ M++F++ G + LRPEG
Sbjct: 58 TDIVRKEMFTFQDRGGRSLTLRPEG 82
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 31.4 bits (72), Expect = 0.55
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 230 TDFVK--MYSFEELGDKLKKLRPEG 252
TD V+ MY+F++ GD+ LRPEG
Sbjct: 57 TDVVQKEMYTFKDKGDRSITLRPEG 81
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 31.0 bits (71), Expect = 0.69
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 230 TDFVK--MYSFEELGDKLKKLRPEG 252
TD V+ MY+FE+ LRPEG
Sbjct: 59 TDVVEKEMYTFEDRNGDSLTLRPEG 83
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 30.7 bits (70), Expect = 0.92
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 180 SLKNFTNTLRMKPADDNA----HRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKM 235
S F L + +R + + EE+ L+ +
Sbjct: 351 SFLKFCQLL----GGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLND---GG 403
Query: 236 YSFEEL-GDKLKKLRPEGLEGGFSLRELNERLMRLRVME 273
YS +L D++ KL + GG L ERL E
Sbjct: 404 YSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPE 442
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 30.2 bits (69), Expect = 1.4
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 197 AH----RVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEG 252
++I G Q+L G K+ +K + + E L +
Sbjct: 209 GVKYTQQIIQGIQQLVKET-GVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDK 267
Query: 253 LEGGFSLRELNERLMRLRVMEMNESNSKIGAGTISALRSSLARIQIEKEEK 303
+ ++ ++ + E++ + + + + R + E K
Sbjct: 268 VSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYK 318
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 29.5 bits (67), Expect = 2.0
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 230 TDFV--KMYSFEELGDKLKKLRPEG 252
F KM+ F + + LR +
Sbjct: 77 KTFNQEKMFQFIKHEGQSITLRYDF 101
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE
structural genomics of infectious diseases, csgid, rRNA
BIN translation; 2.36A {Campylobacter jejuni}
Length = 93
Score = 27.2 bits (61), Expect = 3.3
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 338 DNMSSAEKMKIELAKVREEFKMSESDCGSARVQ 370
+ M+ K E+ +F D GS VQ
Sbjct: 2 NAMALDSAKKAEIVA---KFAKKPGDTGSTEVQ 31
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU
transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Length = 75
Score = 26.3 bits (57), Expect = 4.4
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 321 YLLHPPKEHLVEKYFHPDNMSSAEKMKIELAKVREEFKMSESDCGSARVQSKGFFIWCP 379
YL+ P +L+ +F+ S E +K AK RE F + + + + ++S G + P
Sbjct: 16 YLITPSAYYLLVGHFNEGKFSLIELIK--FAKSRETF-IIDDEIANEFLKSIGAEVELP 71
>3may_A RV0203, possible exported protein; helical protein, heme-binding
protein; 2.50A {Mycobacterium tuberculosis}
Length = 101
Score = 26.9 bits (59), Expect = 4.7
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 36 YSNSSLNSYFSDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTV 95
S+ N + V +Q + +S + P + L + + L + R ++
Sbjct: 27 DSHPETNQVMTAV----LQQQVGPGSVASLKAHFEANPKVASDLHALSQPLTDLSTRCSL 82
Query: 96 PP 97
P
Sbjct: 83 PI 84
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 28.3 bits (64), Expect = 5.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 235 MYSFEELGDKLKKLRPEG 252
YSF + G + L PE
Sbjct: 65 TYSFVDKGGREVTLIPEA 82
>3pqu_A Transferrin binding protein B; lipoprotein, transferrin receptor,
iron acquisition, vaccine candidate, beta-barrel,
outermembrane; 2.10A {Actinobacillus suis}
Length = 570
Score = 28.0 bits (61), Expect = 6.4
Identities = 24/145 (16%), Positives = 43/145 (29%), Gaps = 14/145 (9%)
Query: 47 DVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEE---------IRRNLAEFRQRSTVPP 97
DV+ + + T+ + + ++ L E RRN A F +
Sbjct: 5 DVRPNQTAKAEKATTSYQDEETKKKTKEELDKLMEPTLGVEAKIPRRNRALFDKEGNRKA 64
Query: 98 PIESNSTESQSQSQTQSQSQSQHIS-FQELYKRNTVNETLASKPS----GKPSFEAIRES 152
++ S++Q I +EL + T S K + + +R
Sbjct: 65 TPDTTDELSEAQIMAIWNENIDEIPHLKELNDKTTSGLIYHSHDGKQEDKKRNLQYVRSG 124
Query: 153 LRQMRARSNNDNNNNNRGNGVKNSD 177
+ S N N KN
Sbjct: 125 YVFDESYSEIVKNKNGVPYIFKNGI 149
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 27.7 bits (61), Expect = 6.8
Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 19/116 (16%)
Query: 145 SFEAIRESLRQMRARSNNDNNNNNRGNGVKNSDPLSLKNFTNTLRMKPADDNAHRVIGGS 204
E R +L+ ++ + N + T + + V
Sbjct: 257 MIEPDRINLQTLQNVLRRYTDTNFASR-ITVH-GCGAGENTIRVPFNHEGGHGGFVKPAD 314
Query: 205 QELPALVFGKEKKEEEKAV---ELERMKTDFVKM-------YSFEELGDKLKKLRP 250
+ E + ++ F+KM + + + + +P
Sbjct: 315 AD-------HEPADLIDVRPIDDIIDDAPTFIKMDIEGSELSALKGARRAISEHKP 363
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V*
1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V*
1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V*
1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Length = 71
Score = 25.7 bits (57), Expect = 7.3
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 23/82 (28%)
Query: 228 MKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEM----NESNSKIGA 283
+ ++ + E +L L+ E L+ R ++ E+ +I
Sbjct: 4 LHVQEIRDMTPAEREAELDDLKTE--------------LLNARAVQAAGGAPENPGRIK- 48
Query: 284 GTISALRSSLARIQIEKEEKAR 305
LR ++ARI+ + E+
Sbjct: 49 ----ELRKAIARIKTIQGEEGD 66
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 27.5 bits (62), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 215 EKKEEEKAVELERMKTDFV 233
E KE E+ ++RMKT+F+
Sbjct: 6 ESKELERLKRIDRMKTEFI 24
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 27.0 bits (58), Expect = 9.2
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 56 TPPNQTTSSSSSSSRGPPSKVASLEEIRRNLAEFRQRSTVPPPIESNSTESQSQSQTQSQ 115
P T + P + ++ ++ R+ VPPP + ++ Q Q S
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 116 SQSQH 120
+
Sbjct: 62 FEDTF 66
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle,
transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Length = 155
Score = 26.5 bits (58), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 117 QSQHISFQELYKRNTVNETLASKPSGKPS 145
Q I+F+ L +RN E AS+P S
Sbjct: 32 ILQQIAFKNLVQRNRHAEQQASRPPPPNS 60
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 27.0 bits (59), Expect = 9.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 128 KRNTVNETLASKPSGKPSFEAIR 150
N VN LA PS P F ++
Sbjct: 195 SHNRVNARLAGAPSEDPQFPKVQ 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.342
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,340,245
Number of extensions: 312874
Number of successful extensions: 712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 46
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.0 bits)