RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017005
         (379 letters)



>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
           (Peniophora sp. SG) [TaxId: 204723]}
          Length = 198

 Score = 29.2 bits (65), Expect = 0.62
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 207 LPALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRE 261
           +P   F         + E E M TD   M    ++G  L    P+ +E G  L  
Sbjct: 143 MPQPTFDFRFPAGRTSKEAEDMMTDMCVM--SAKIGGFLPGSLPQFMEPGLVLHL 195


>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
           C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 95

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 6/40 (15%), Positives = 17/40 (42%)

Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKK 247
              +   +++ E   ++++ M T   +    + L +  KK
Sbjct: 56  KFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 95


>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
           [TaxId: 274]}
          Length = 84

 Score = 26.2 bits (58), Expect = 2.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 347 KIELAKVREEFKMSESDCGSARVQ 370
           K E  KV +EF     D GS  VQ
Sbjct: 2   KEEKQKVIQEFARFPGDTGSTEVQ 25


>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 46  SDVKASLRKQTPPNQTTSSSSSSSRGPPSKVASLEEIRRN 85
           S  +  +++  PP +++  ++ S      K  S +  RRN
Sbjct: 74  SQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYRRN 113


>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 25.3 bits (55), Expect = 4.9
 Identities = 4/41 (9%), Positives = 14/41 (34%)

Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKKL 248
              V   E +       ++ +++      + + +   L+ L
Sbjct: 57  RVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTL 97


>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853
           {Thermotoga maritima [TaxId: 2336]}
          Length = 89

 Score = 25.0 bits (54), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 215 EKKEEEKAVELERMKTDFVKMYSFE 239
           E KE E+   ++RMKT+F+   S E
Sbjct: 6   ESKELERLKRIDRMKTEFIANISHE 30


>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 110

 Score = 25.4 bits (55), Expect = 6.0
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 208 PALVFGKEKKEEEKAVELERMKTDFVKMYSFEELGDKLKK 247
           P ++   +K+ E   V +   +   +      E+ +KL++
Sbjct: 59  PYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQ 98


>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila
           melanogaster [TaxId: 7227]}
          Length = 117

 Score = 25.2 bits (55), Expect = 7.6
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 181 LKNFTNTLRMKPADDNAHRVIGGSQELPALVFGKEKKEEEKAVELERMKTDFVKMYSFEE 240
           ++ F  + R     +   + + G    P +       + ++ + + +  TD V+ +    
Sbjct: 29  IQAFIQSGRPAKFPNLQIKYVRGLD--PVVKLLDASGKVQETLSITKWNTDTVEEF---- 82

Query: 241 LGDKLKKLRPEGLE 254
               L K       
Sbjct: 83  FETHLAKDGAGKNS 96


>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 66

 Score = 23.8 bits (52), Expect = 9.7
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 16/78 (20%)

Query: 228 MKTDFVKMYSFEELGDKLKKLRPEGLEGGFSLRELNERLMRLRVMEMNESNSKIGAGTIS 287
           MK   ++     +   ++   + E              LM LR        ++     + 
Sbjct: 1   MKPSEMRNLQATDFAKEIDARKKE--------------LMELRFQAAAGQLAQP--HRVR 44

Query: 288 ALRSSLARIQIEKEEKAR 305
            LR  +A++   K E AR
Sbjct: 45  QLRREVAQLNTVKAELAR 62


>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 25.1 bits (55), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 117 QSQHISFQELYKRNTVNETLASKP 140
             Q I+F+ L +RN   E  AS+P
Sbjct: 29  ILQQIAFKNLVQRNRHAEQQASRP 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.125    0.342 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,294,159
Number of extensions: 59103
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 21
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.6 bits)