Query 017008
Match_columns 379
No_of_seqs 224 out of 1587
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 4.1E-76 8.9E-81 562.2 35.2 341 19-379 56-414 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 100.0 1.4E-33 3.1E-38 274.3 30.1 274 28-377 33-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 100.0 4.2E-33 9E-38 270.8 30.1 281 23-377 22-318 (318)
4 PRK09546 zntB zinc transporter 100.0 2.4E-31 5.2E-36 259.1 32.0 273 27-377 36-324 (324)
5 PRK11085 magnesium/nickel/coba 100.0 3.7E-29 7.9E-34 241.0 27.9 275 27-377 25-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 100.0 2.8E-27 6E-32 226.1 25.1 272 26-373 2-292 (292)
7 PRK09546 zntB zinc transporter 95.5 0.6 1.3E-05 45.6 15.6 20 200-219 182-201 (324)
8 COG0598 CorA Mg2+ and Co2+ tra 92.6 6.8 0.00015 38.2 16.2 49 287-335 232-281 (322)
9 PF01544 CorA: CorA-like Mg2+ 92.5 4.4 9.6E-05 38.2 14.5 74 287-361 211-287 (292)
10 TIGR00383 corA magnesium Mg(2+ 89.9 18 0.00039 34.9 16.0 73 288-362 236-310 (318)
11 PF10267 Tmemb_cc2: Predicted 89.4 18 0.00039 36.4 15.5 19 313-331 345-363 (395)
12 PF03904 DUF334: Domain of unk 86.2 27 0.00059 32.1 17.8 74 301-374 139-227 (230)
13 PRK11085 magnesium/nickel/coba 83.0 48 0.001 32.3 21.9 143 149-335 128-275 (316)
14 PF07332 DUF1469: Protein of u 81.7 23 0.00051 28.9 10.4 43 295-338 20-62 (121)
15 PF02656 DUF202: Domain of unk 79.6 18 0.00039 26.8 8.2 16 361-376 58-73 (73)
16 PRK15348 type III secretion sy 77.6 3 6.5E-05 39.2 4.1 58 317-374 185-248 (249)
17 PF10805 DUF2730: Protein of u 77.2 13 0.00028 30.1 7.3 51 171-221 46-100 (106)
18 PF11286 DUF3087: Protein of u 75.1 8.9 0.00019 33.6 6.0 53 316-377 24-76 (165)
19 PF05478 Prominin: Prominin; 72.0 1.7E+02 0.0036 32.5 17.8 22 321-342 428-449 (806)
20 TIGR02230 ATPase_gene1 F0F1-AT 71.6 14 0.00031 29.7 6.0 32 310-341 39-70 (100)
21 PF05478 Prominin: Prominin; 67.9 2E+02 0.0044 31.9 18.9 14 172-185 230-243 (806)
22 PF02060 ISK_Channel: Slow vol 66.0 9.6 0.00021 31.8 4.0 51 325-375 13-70 (129)
23 PF13042 DUF3902: Protein of u 64.1 20 0.00043 30.9 5.6 68 305-374 58-125 (161)
24 TIGR02132 phaR_Bmeg polyhydrox 63.8 38 0.00082 30.0 7.4 54 162-220 81-134 (189)
25 PRK02935 hypothetical protein; 62.5 65 0.0014 26.1 7.9 7 366-372 54-60 (110)
26 PF10856 DUF2678: Protein of u 62.4 6.5 0.00014 32.3 2.4 44 313-360 31-74 (118)
27 COG5130 YIP3 Prenylated rab ac 58.1 40 0.00088 28.8 6.4 40 298-337 54-99 (169)
28 PF04971 Lysis_S: Lysis protei 56.7 15 0.00033 27.2 3.2 57 314-375 3-59 (68)
29 TIGR01478 STEVOR variant surfa 56.3 34 0.00074 32.7 6.3 15 211-225 111-125 (295)
30 PF06127 DUF962: Protein of un 56.2 84 0.0018 24.8 7.8 32 293-324 3-34 (95)
31 PRK14584 hmsS hemin storage sy 54.4 63 0.0014 28.1 7.2 27 312-339 17-43 (153)
32 PF04156 IncA: IncA protein; 53.4 22 0.00047 31.6 4.5 21 314-334 5-25 (191)
33 PF09990 DUF2231: Predicted me 52.8 65 0.0014 25.6 6.8 25 314-338 6-30 (104)
34 PF06645 SPC12: Microsomal sig 52.3 14 0.00031 28.1 2.6 56 314-378 11-68 (76)
35 PF11023 DUF2614: Protein of u 51.9 1E+02 0.0022 25.3 7.5 6 306-311 5-10 (114)
36 PF11368 DUF3169: Protein of u 51.5 61 0.0013 30.3 7.4 28 307-334 6-33 (248)
37 KOG3208 SNARE protein GS28 [In 51.3 2E+02 0.0044 26.5 13.7 32 191-222 87-118 (231)
38 PRK13182 racA polar chromosome 50.9 84 0.0018 27.9 7.7 27 193-219 118-144 (175)
39 PF11137 DUF2909: Protein of u 50.7 97 0.0021 22.7 7.1 60 313-377 1-60 (63)
40 PF01102 Glycophorin_A: Glycop 50.7 27 0.00058 29.2 4.2 13 347-359 65-77 (122)
41 PTZ00370 STEVOR; Provisional 50.2 49 0.0011 31.7 6.4 15 211-225 110-124 (296)
42 PF06210 DUF1003: Protein of u 49.0 49 0.0011 26.9 5.5 34 318-351 3-37 (108)
43 PF10272 Tmpp129: Putative tra 49.0 28 0.00061 34.5 4.8 44 295-338 18-61 (358)
44 PF13273 DUF4064: Protein of u 47.8 45 0.00097 26.3 5.1 27 312-338 4-30 (100)
45 KOG3850 Predicted membrane pro 47.7 3.1E+02 0.0066 27.5 17.4 27 312-343 393-419 (455)
46 PF11970 Git3_C: G protein-cou 46.8 47 0.001 25.2 4.7 68 305-376 3-74 (76)
47 PF07889 DUF1664: Protein of u 46.0 1.4E+02 0.0031 25.0 7.9 24 195-218 91-114 (126)
48 PF08173 YbgT_YccB: Membrane b 45.3 44 0.00096 20.3 3.4 19 348-366 3-21 (28)
49 PF11669 WBP-1: WW domain-bind 45.3 24 0.00052 28.4 3.1 10 347-356 22-31 (102)
50 TIGR01167 LPXTG_anchor LPXTG-m 43.1 35 0.00076 21.0 3.0 8 367-374 25-32 (34)
51 PF12670 DUF3792: Protein of u 42.9 35 0.00076 28.0 3.8 57 318-377 12-68 (116)
52 PF05360 YiaAB: yiaA/B two hel 41.4 75 0.0016 22.3 4.8 40 315-359 3-42 (53)
53 PF06196 DUF997: Protein of un 41.2 1.6E+02 0.0035 22.5 7.6 26 315-340 8-33 (80)
54 PF14654 Epiglycanin_C: Mucin, 41.2 45 0.00097 26.6 3.9 29 345-373 16-44 (106)
55 PF14015 DUF4231: Protein of u 40.9 1.5E+02 0.0033 23.4 7.4 10 315-324 20-29 (112)
56 PF10754 DUF2569: Protein of u 40.4 65 0.0014 27.6 5.3 13 366-378 73-85 (149)
57 PF10577 UPF0560: Uncharacteri 40.2 29 0.00062 37.8 3.6 30 348-377 273-303 (807)
58 PRK14749 hypothetical protein; 40.2 83 0.0018 19.4 4.0 23 347-369 2-24 (30)
59 PF07798 DUF1640: Protein of u 38.8 2.7E+02 0.0059 24.4 16.6 22 196-217 76-97 (177)
60 PF04102 SlyX: SlyX; InterPro 38.6 91 0.002 23.0 5.1 24 196-219 28-51 (69)
61 TIGR02106 cyd_oper_ybgT cyd op 37.9 68 0.0015 19.9 3.5 17 348-364 3-19 (30)
62 PF12263 DUF3611: Protein of u 37.9 1.1E+02 0.0025 27.3 6.5 55 314-375 26-81 (183)
63 PRK04406 hypothetical protein; 37.9 1.4E+02 0.0031 22.6 6.1 52 163-219 7-58 (75)
64 PF06570 DUF1129: Protein of u 37.7 1E+02 0.0023 27.8 6.5 24 314-338 148-171 (206)
65 PF05591 DUF770: Protein of un 37.5 55 0.0012 28.6 4.3 38 191-228 110-150 (157)
66 COG3937 Uncharacterized conser 36.5 2.2E+02 0.0048 23.1 7.2 22 195-216 85-106 (108)
67 PRK02119 hypothetical protein; 36.5 1.4E+02 0.0031 22.4 5.9 51 164-219 6-56 (73)
68 TIGR01834 PHA_synth_III_E poly 36.5 3E+02 0.0064 27.0 9.6 50 172-221 268-317 (320)
69 PF07889 DUF1664: Protein of u 36.0 2.6E+02 0.0057 23.4 8.0 31 153-183 36-66 (126)
70 PF11177 DUF2964: Protein of u 35.6 1.1E+02 0.0025 22.3 5.0 28 314-341 8-35 (62)
71 PF01618 MotA_ExbB: MotA/TolQ/ 35.5 2.5E+02 0.0055 23.4 8.1 8 366-373 118-125 (139)
72 COG4244 Predicted membrane pro 35.0 1.6E+02 0.0034 25.8 6.7 32 309-340 47-78 (160)
73 PRK02793 phi X174 lysis protei 34.7 1.5E+02 0.0031 22.2 5.7 50 165-219 6-55 (72)
74 PF04995 CcmD: Heme exporter p 34.5 69 0.0015 21.6 3.6 9 367-375 23-31 (46)
75 TIGR03141 cytochro_ccmD heme e 34.5 56 0.0012 22.0 3.1 9 367-375 24-32 (45)
76 PF04226 Transgly_assoc: Trans 33.7 94 0.002 21.3 4.2 11 325-335 10-20 (48)
77 PTZ00382 Variant-specific surf 33.4 10 0.00022 30.2 -0.8 9 367-375 87-95 (96)
78 PF00335 Tetraspannin: Tetrasp 32.8 15 0.00031 32.4 0.0 20 315-334 8-27 (221)
79 PRK04325 hypothetical protein; 32.6 1.7E+02 0.0036 22.1 5.8 25 195-219 32-56 (74)
80 PRK00295 hypothetical protein; 32.2 2E+02 0.0043 21.2 6.0 24 195-218 28-51 (68)
81 PF04799 Fzo_mitofusin: fzo-li 31.6 3.4E+02 0.0073 24.1 8.3 57 147-219 107-163 (171)
82 PF13140 DUF3980: Domain of un 31.5 1.4E+02 0.003 22.6 4.9 57 314-370 12-74 (87)
83 PF06667 PspB: Phage shock pro 31.5 1E+02 0.0022 23.4 4.4 35 186-224 35-69 (75)
84 TIGR02976 phageshock_pspB phag 31.4 1E+02 0.0022 23.4 4.4 34 187-224 36-69 (75)
85 TIGR03358 VI_chp_5 type VI sec 31.4 62 0.0013 28.3 3.6 38 191-228 111-151 (159)
86 PF05597 Phasin: Poly(hydroxya 31.2 3.2E+02 0.007 23.0 8.6 23 198-220 107-129 (132)
87 PRK02870 heat shock protein Ht 31.0 2.1E+02 0.0045 28.2 7.7 30 305-334 18-47 (336)
88 TIGR01837 PHA_granule_1 poly(h 29.6 3.1E+02 0.0067 22.5 7.4 21 193-213 96-116 (118)
89 PF11947 DUF3464: Protein of u 29.1 2.7E+02 0.0059 24.2 7.2 50 305-356 57-106 (153)
90 PF11346 DUF3149: Protein of u 29.0 1.3E+02 0.0029 20.1 4.1 14 361-374 23-36 (42)
91 PF00901 Orbi_VP5: Orbivirus o 29.0 5.9E+02 0.013 26.5 10.5 77 150-227 141-222 (508)
92 COG3462 Predicted membrane pro 28.8 3.2E+02 0.007 22.3 7.3 19 316-334 13-31 (117)
93 PF05377 FlaC_arch: Flagella a 28.8 1.5E+02 0.0032 21.2 4.5 23 197-219 18-40 (55)
94 PRK13682 hypothetical protein; 28.7 55 0.0012 22.9 2.3 17 319-335 4-20 (51)
95 PRK08456 flagellar motor prote 28.5 1.2E+02 0.0027 28.5 5.5 44 315-361 3-48 (257)
96 PRK00846 hypothetical protein; 28.3 2.5E+02 0.0054 21.5 6.0 23 197-219 38-60 (77)
97 PF02439 Adeno_E3_CR2: Adenovi 27.7 1.4E+02 0.003 19.6 3.9 9 367-375 24-32 (38)
98 PF05377 FlaC_arch: Flagella a 27.3 1.2E+02 0.0027 21.6 3.9 34 197-230 11-44 (55)
99 TIGR00807 malonate_madL malona 27.1 2E+02 0.0043 23.9 5.6 52 316-378 6-57 (125)
100 PF15431 TMEM190: Transmembran 27.0 87 0.0019 25.5 3.5 29 346-376 61-89 (134)
101 PF04341 DUF485: Protein of un 27.0 3E+02 0.0066 21.4 9.5 27 345-375 52-78 (91)
102 COG0004 AmtB Ammonia permease 26.8 1.6E+02 0.0036 29.7 6.2 52 325-376 204-255 (409)
103 PF06103 DUF948: Bacterial pro 26.6 2.9E+02 0.0064 21.1 8.1 18 165-182 31-48 (90)
104 PRK00736 hypothetical protein; 26.5 2.4E+02 0.0052 20.8 5.6 23 196-218 29-51 (68)
105 PF01957 NfeD: NfeD-like C-ter 26.5 22 0.00048 29.6 0.0 18 322-339 24-41 (144)
106 PF15086 UPF0542: Uncharacteri 26.4 1.4E+02 0.003 22.5 4.1 13 344-356 17-29 (74)
107 PF12761 End3: Actin cytoskele 26.1 5E+02 0.011 23.5 9.2 23 162-184 98-120 (195)
108 COG4890 Predicted outer membra 25.9 1.4E+02 0.0031 19.0 3.5 17 347-363 2-18 (37)
109 PF06770 Arif-1: Actin-rearran 25.8 1.5E+02 0.0033 26.8 5.2 20 316-335 40-59 (196)
110 PF08317 Spc7: Spc7 kinetochor 25.7 5.4E+02 0.012 25.0 9.7 16 44-59 14-29 (325)
111 PF07086 DUF1352: Protein of u 25.5 2.2E+02 0.0047 25.6 6.1 32 303-335 91-122 (186)
112 PRK13021 secF preprotein trans 25.4 3.7E+02 0.0079 26.0 8.2 26 302-329 220-245 (297)
113 PF03929 PepSY_TM: PepSY-assoc 25.2 1.3E+02 0.0028 18.1 3.2 18 315-332 7-24 (27)
114 PF11945 WASH_WAHD: WAHD domai 25.1 4.5E+02 0.0098 25.4 8.7 35 192-226 42-76 (297)
115 PRK05771 V-type ATP synthase s 25.1 2.1E+02 0.0046 30.7 7.2 29 308-338 391-419 (646)
116 TIGR01598 holin_phiLC3 holin, 24.8 43 0.00094 25.6 1.4 24 315-338 13-36 (78)
117 PF01031 Dynamin_M: Dynamin ce 24.7 3.3E+02 0.0071 25.9 7.8 78 144-223 187-269 (295)
118 PF01769 MgtE: Divalent cation 24.6 4E+02 0.0087 22.0 8.8 13 364-376 97-109 (135)
119 KOG1853 LIS1-interacting prote 24.3 6.1E+02 0.013 24.0 8.9 73 154-226 46-124 (333)
120 PRK10881 putative hydrogenase 23.8 3E+02 0.0066 27.5 7.7 8 345-352 51-58 (394)
121 PF02388 FemAB: FemAB family; 23.8 4.6E+02 0.01 26.4 9.0 57 161-219 243-299 (406)
122 PF15176 LRR19-TM: Leucine-ric 23.6 2.2E+02 0.0047 22.9 5.1 23 345-367 15-38 (102)
123 COG3516 Predicted component of 23.6 89 0.0019 27.4 3.2 38 191-228 116-156 (169)
124 PF12597 DUF3767: Protein of u 23.3 2.2E+02 0.0049 23.5 5.5 10 366-375 82-91 (118)
125 PRK15326 type III secretion sy 23.2 3.5E+02 0.0076 20.8 8.8 64 157-220 8-76 (80)
126 PF11857 DUF3377: Domain of un 23.2 56 0.0012 24.7 1.6 21 355-375 38-58 (74)
127 PF10112 Halogen_Hydrol: 5-bro 23.1 1.7E+02 0.0036 26.2 5.1 20 317-336 11-30 (199)
128 PF13829 DUF4191: Domain of un 23.0 2.9E+02 0.0062 25.6 6.6 11 347-357 52-62 (224)
129 PF06653 Claudin_3: Tight junc 23.0 3.5E+02 0.0077 23.4 7.0 26 314-339 95-121 (163)
130 PF14163 SieB: Superinfection 22.7 2.8E+02 0.006 23.6 6.2 20 313-332 4-23 (151)
131 PF03915 AIP3: Actin interacti 22.3 5.4E+02 0.012 26.3 9.0 26 158-183 211-236 (424)
132 KOG2629 Peroxisomal membrane a 22.3 5.8E+02 0.013 24.6 8.6 66 154-220 123-188 (300)
133 PF10160 Tmemb_40: Predicted m 22.3 4.1E+02 0.0089 25.2 7.5 66 312-378 114-187 (261)
134 PF10083 DUF2321: Uncharacteri 22.0 5.3E+02 0.012 22.5 8.5 73 146-220 77-150 (158)
135 PF10845 DUF2576: Protein of u 21.9 1.3E+02 0.0028 20.4 3.0 16 197-212 15-30 (48)
136 PRK09110 flagellar motor prote 21.8 1.2E+02 0.0027 29.0 4.2 41 316-359 2-44 (283)
137 COG5487 Small integral membran 21.6 2.9E+02 0.0064 19.3 5.2 17 319-335 4-20 (54)
138 PF14244 UBN2_3: gag-polypepti 21.5 3.2E+02 0.0069 23.1 6.4 65 156-221 65-130 (152)
139 PRK11644 sensory histidine kin 21.3 3.5E+02 0.0076 27.9 7.8 60 309-378 106-166 (495)
140 PF07760 DUF1616: Protein of u 21.1 2.1E+02 0.0045 27.4 5.6 51 318-376 60-111 (287)
141 COG5570 Uncharacterized small 21.0 3.1E+02 0.0067 19.3 6.4 50 159-213 4-53 (57)
142 PF12805 FUSC-like: FUSC-like 21.0 2.8E+02 0.006 26.3 6.5 17 323-339 50-66 (284)
143 PRK10517 magnesium-transportin 21.0 3.3E+02 0.0072 30.6 7.9 11 366-376 891-901 (902)
144 TIGR00794 kup potassium uptake 20.9 1.8E+02 0.0038 31.6 5.4 45 298-342 300-349 (688)
145 TIGR02120 GspF general secreti 20.8 5E+02 0.011 25.8 8.5 12 29-40 2-13 (399)
146 PF13994 PgaD: PgaD-like prote 20.7 5.1E+02 0.011 21.7 7.7 15 325-339 35-49 (138)
147 PF08196 UL2: UL2 protein; In 20.6 2E+02 0.0043 20.2 3.8 25 339-364 23-47 (60)
148 KOG3176 Predicted alpha-helica 20.5 4.1E+02 0.0088 24.5 6.8 74 143-224 41-114 (223)
149 PF14257 DUF4349: Domain of un 20.3 4.4E+02 0.0095 24.5 7.6 52 166-220 138-189 (262)
150 PRK15122 magnesium-transportin 20.2 2.8E+02 0.006 31.2 7.1 9 369-377 894-903 (903)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-76 Score=562.15 Aligned_cols=341 Identities=65% Similarity=0.935 Sum_probs=303.5
Q ss_pred hhhccCCceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhhhcCCCCCceeEeeeCCeEEEeccccceeeecCcEEe
Q 017008 19 ATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLL 98 (379)
Q Consensus 19 ~~~~~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~ld~~~~~~~~I~~R~~~Ilvnle~i~~II~~d~vl~ 98 (379)
+.++++.++++|++||.+|++++.+++|+.|+++.||+|||||.+||.++||++|+.||+|||+|+|||||||++|+|++
T Consensus 56 ~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll 135 (414)
T KOG2662|consen 56 VSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLL 135 (414)
T ss_pred cccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017008 99 RDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178 (379)
Q Consensus 99 f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~ 178 (379)
||+.++ +.++.+++++|+...+.....+.+ +....++.+||||||||++|+.+|+.|+.++.+||..+++
T Consensus 136 ~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s---------~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~ 205 (414)
T KOG2662|consen 136 LDSLDP-VIPYNEELQRRLPVELESRGNQLS---------SDGGSKDELPFEFRALEVALEAACSFLDSRLSELETEAYP 205 (414)
T ss_pred eccccc-cchHHHHHHHHhcccccccccccC---------CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 889999999999887653211111 1122368999999999999999999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccc-cCCCCCCCCCCCCCCCCccc
Q 017008 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAG-TSPVSGSGAANWFPASPTIG 257 (379)
Q Consensus 179 ~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~-~~~l~~~~~~~~~~~~~~~~ 257 (379)
+||+|+.++++.+|++|+.+|++|.+|.++++++||+|+++|+||+||++||||+++.+ .+ +.|.+..++..
T Consensus 206 ~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~-------~~~~~~sp~~~ 278 (414)
T KOG2662|consen 206 LLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS-------PESAPTSPTIK 278 (414)
T ss_pred HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-------cccCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999865 22 23344445444
Q ss_pred cchhhcc--ccccccccCChhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017008 258 SKISRAS--RASLATIRGDENDVEELEMLLE---------------LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGT 320 (379)
Q Consensus 258 ~~l~~~~--~~~~~~~~~~~~~~eele~LLE---------------l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t 320 (379)
++..|++ +.+. .-+..++++|+||||| +++|||+|||++||+||++||+++++++.||+.|
T Consensus 279 ~~~~r~~~~~~~s--~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT 356 (414)
T KOG2662|consen 279 AGISRAKSNRASS--TVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGT 356 (414)
T ss_pred CCccchhhcccch--hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 4333322 1111 1112689999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 017008 321 VSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 379 (379)
Q Consensus 321 ~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl~~ 379 (379)
++++++++|||+||||+++++|+ .+|+|+||+++++++|+++|++..+|+|+||+++.
T Consensus 357 ~~~s~~~~va~ifGMNl~~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~ 414 (414)
T KOG2662|consen 357 FCLSVFSVVAGIFGMNLPSSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL 414 (414)
T ss_pred HHHHHHHHHHHHhcCCccchhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999 88999999999999999999999999999998763
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=274.26 Aligned_cols=274 Identities=18% Similarity=0.262 Sum_probs=210.3
Q ss_pred eEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCe--EEE------------eccccceeee
Q 017008 28 RSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQA--IVL------------NLEHIKAIIT 92 (379)
Q Consensus 28 ~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~--Ilv------------nle~i~~II~ 92 (379)
..|+.++.....+. ..+.+.+|+|+..+.. +|. +++|++...++. +++ .+++++.|++
T Consensus 33 ~~Widl~~p~~~e~-----~~l~~~~~l~~~~~ed~~~~--~~r~r~e~~d~~~~i~~~~~~~~~~~~~~~~~~v~~i~~ 105 (322)
T COG0598 33 FVWIDLVEPDDEEL-----EWLAKTFGLHPLALEDLLDA--EQRPKVERYDDYLFIVLRDVNLEEEEDKAETEPVSIIVG 105 (322)
T ss_pred eEEEECCCCCHHHH-----HHHHHhcCCCcchHHHHhCc--ccCCceEeeCCEEEEEEEeeccccccccccceeEEEEEe
Confidence 66998877665443 5677889999999998 555 788899999974 333 2567899999
Q ss_pred cCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 93 SEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTEL 172 (379)
Q Consensus 93 ~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~l 172 (379)
.+.+++++..+. +.++.+++|+....... .+..+ +.+.++|.+.+.+...+| .+
T Consensus 106 ~~~liT~r~~~~---~~~~~vr~r~~~~~~~~-----------------~~~~~--l~~~lld~i~d~~~~~le----~i 159 (322)
T COG0598 106 KRRLITIRHRPL---PAFDRVRERLEKGTLLT-----------------RGADE--LLYALLDAIVDNYFPVLE----QI 159 (322)
T ss_pred CCEEEEEecCCC---ccHHHHHHHHhcccccc-----------------CCHHH--HHHHHHHHHHHhhHHHHH----HH
Confidence 999999998553 46889999998752111 12333 223356666666666555 44
Q ss_pred HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCC
Q 017008 173 ETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPA 252 (379)
Q Consensus 173 e~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~ 252 (379)
+..+..+.+.+..+.....+++|..+++.+..+++.+.+.++++..+.+...+.. .+...
T Consensus 160 ~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~----~~~~~---------------- 219 (322)
T COG0598 160 EDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWL----SEEDR---------------- 219 (322)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccC----CHHHH----------------
Confidence 5555556666666666688999999999999999999999999999998876421 11000
Q ss_pred CCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 017008 253 SPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAG 331 (379)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaG 331 (379)
.+ ..+..+++..+.| +..+.+.+..+.+.+++.++|++|++||+||++|++|+|+|+|||
T Consensus 220 -----------------~~--l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIag 280 (322)
T COG0598 220 -----------------EY--LRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITG 280 (322)
T ss_pred -----------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHc
Confidence 01 1233344455555 566778888888899999999999999999999999999999999
Q ss_pred HhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 332 IFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 332 ifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
+|||||++|||.+|+||||+++++|+++|++ +++||||||||
T Consensus 281 iyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~----~~~~frrk~Wl 322 (322)
T COG0598 281 FYGMNFKGMPELDWPYGYPIALILMLLLALL----LYLYFRRKGWL 322 (322)
T ss_pred ccccCCCCCcCCCCcccHHHHHHHHHHHHHH----HHHHHHhcCcC
Confidence 9999999999999999999999999888775 99999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=100.00 E-value=4.2e-33 Score=270.76 Aligned_cols=281 Identities=18% Similarity=0.247 Sum_probs=205.3
Q ss_pred cCCceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeEEE-------------eccccc
Q 017008 23 KTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVL-------------NLEHIK 88 (379)
Q Consensus 23 ~~~~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~Ilv-------------nle~i~ 88 (379)
...+...|+.+.+..+.+.. ..+.+.+|+|+.++.. +++ ++.|++...++...+ ..+++.
T Consensus 22 ~~~~~~~Widl~~p~~~e~~----~~l~~~~~l~~~~~ed~~~~--~~~~k~e~~~~~~~i~~~~~~~~~~~~~~~~~l~ 95 (318)
T TIGR00383 22 QELNTVLWIDLIEPTDEETL----AKLGQFFAIHPLALEDILNS--PQRPKVEEDEDHLFIISFFLNEDEDDTFETEQVS 95 (318)
T ss_pred CCCCceEEEEccCCCcHHHH----HHHHHHcCcCcchHHHhhCC--CCCCcEEEECCEEEEEEEeeeccCCCcceeEEEE
Confidence 34556789998666555533 6788999999999998 454 566777777765332 236788
Q ss_pred eeeecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 017008 89 AIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAAR 168 (379)
Q Consensus 89 ~II~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~ 168 (379)
.+++.+.++++.+.+. +.++.+.+++..+.... ..-|.+ ++-.+++.+++.+...
T Consensus 96 ~~l~~~~liTv~~~~~---~~~~~~~~~~~~~~~~~--------------------~~~~~~--ll~~il~~ivd~~~~~ 150 (318)
T TIGR00383 96 FILGKNLLFTIHEREL---PAFDSIRERIRTSQKVF--------------------EKGADY--LLYDIFDAIIDSYFPL 150 (318)
T ss_pred EEEECCEEEEEEcCCC---CcHHHHHHHHHhCchhh--------------------hCCHHH--HHHHHHHHHHhccHHH
Confidence 9999999999987653 46778888776542110 001222 3444555555444555
Q ss_pred HHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-hhhhhhhhhcccccCCCCCCCCC
Q 017008 169 TTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD-DMADLYLSRKMAGTSPVSGSGAA 247 (379)
Q Consensus 169 ~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~-dm~~m~Lt~~~~~~~~l~~~~~~ 247 (379)
++.++..+..+.+.+.+......+++++.+|+++..+++.+.+.+++++.+.+.+. ... ++...
T Consensus 151 l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~----~~~~~----------- 215 (318)
T TIGR00383 151 LENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQ----TEEVR----------- 215 (318)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC----CHHHH-----------
Confidence 55566666666666666556678899999999999999999999999999987542 110 00000
Q ss_pred CCCCCCCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017008 248 NWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIY 326 (379)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~ 326 (379)
.+ ..+..+++..+.+ ++.+.+.++.+.+.+++..+|++|++|++||++|++|+|+
T Consensus 216 ----------------------~~--~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~ 271 (318)
T TIGR00383 216 ----------------------EY--LRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPL 271 (318)
T ss_pred ----------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1222334555554 5567777788888899999999999999999999999999
Q ss_pred HHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 327 SLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 327 t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
|+|||+|||||++|||.+|+|||++++++|+++|++ +++||||||||
T Consensus 272 t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~----~~~~fkrk~Wl 318 (318)
T TIGR00383 272 TFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALG----PLIYFRRKGWL 318 (318)
T ss_pred HHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 999999999999999999999999999999777765 99999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=100.00 E-value=2.4e-31 Score=259.09 Aligned_cols=273 Identities=11% Similarity=0.110 Sum_probs=189.5
Q ss_pred eeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeEEEec--------------cccceee
Q 017008 27 SRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVLNL--------------EHIKAII 91 (379)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~Ilvnl--------------e~i~~II 91 (379)
...|+.++..-..+ +..|.+ .+.++..+.. +.. .++.|++...++.+.+.+ .++++++
T Consensus 36 ~~~Wi~l~~~~~~e-----~~~L~~-~~~~~~~~~d~l~~-~~~rpk~e~~~~~~~iil~~~~~~~~~~~~~~~~l~~~l 108 (324)
T PRK09546 36 HPCWLHLDYTHPDS-----AQWLAT-TPLLPDNVRDALAG-ESTRPRVSRLGEGTLITLRCINGNTDERPDQLVAMRVYI 108 (324)
T ss_pred CCEEEEeCCCChhH-----HHHHHh-cCCCCHHHHHHHhC-CCCCCcEEEECCEEEEEEEeccCCCCCChhheEEEEEEE
Confidence 45688886433221 234444 4667777666 443 257889998887644332 3378999
Q ss_pred ecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 017008 92 TSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTE 171 (379)
Q Consensus 92 ~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~ 171 (379)
+.|+++++...+. ++++.+++++..+.+.. .... +.+.+++.+++. +...++.
T Consensus 109 ~~~~lITv~~~~~---~~~~~~~~~~~~~~~~~------------------~~~~--ll~~lld~ivd~----~~~~l~~ 161 (324)
T PRK09546 109 TDRLIVSTRHRKV---LALDDVVSDLQEGTGPT------------------DCGG--WLVDVCDALTDH----ASEFIEE 161 (324)
T ss_pred eCCEEEEEecCCc---ccHHHHHHHHHhCCCCC------------------CHHH--HHHHHHHHHHHH----HHHHHHH
Confidence 9999999987654 47888888886643210 1111 333345555544 4444445
Q ss_pred HHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCC
Q 017008 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFP 251 (379)
Q Consensus 172 le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~ 251 (379)
+++.+..+.+.+.++..+ .++++..+|+++..+++.+.|.++++.++.+.+... +++...
T Consensus 162 i~~~ld~lE~~l~~~~~~-~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~----~~~~~~--------------- 221 (324)
T PRK09546 162 LHDKIIDLEDNLLDQQIP-PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPW----MSDDDR--------------- 221 (324)
T ss_pred HHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cChHHH---------------
Confidence 555555555555443222 467999999999999999999999999998654221 111100
Q ss_pred CCCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017008 252 ASPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVA 330 (379)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~Ia 330 (379)
.++ .+..+++..++| +...++.+..+.+.+.+..+|++|+.|++||++|++|+|+||||
T Consensus 222 ------------------~~l--~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~Ia 281 (324)
T PRK09546 222 ------------------RRM--QDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLT 281 (324)
T ss_pred ------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 222333444444 55666777788888889999999999999999999999999999
Q ss_pred hHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 331 GIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 331 GifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
|+|||||++|||.+|+||||+++++|++++++ +++||||||||
T Consensus 282 GiyGMNf~~mPel~~~~gy~~~l~im~~i~~~----~~~~fkrk~Wl 324 (324)
T PRK09546 282 GLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGG----VAWWLKRSKWL 324 (324)
T ss_pred hhhccccCCCCCcCCcchHHHHHHHHHHHHHH----HHHHHHhcccC
Confidence 99999999999999999999999988777664 89999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.97 E-value=3.7e-29 Score=240.97 Aligned_cols=275 Identities=12% Similarity=0.165 Sum_probs=189.3
Q ss_pred eeEEEEEcCCCCeeEEeechhhHHHhhCCC---cchhhhhcCCCCCceeEeeeCCeEEEe-------------cccccee
Q 017008 27 SRSWILLDAAGNSTVLDVDKHAIMHRVQIH---ARDLRILDPLLSYPSTILGREQAIVLN-------------LEHIKAI 90 (379)
Q Consensus 27 ~~~w~~id~~g~~~~~~~~k~~l~~~~~l~---~RDlr~ld~~~~~~~~I~~R~~~Ilvn-------------le~i~~I 90 (379)
..-|+.+...... .+..+.+.+|++ ..|+..+..+ |++...++++.++ .++|.+|
T Consensus 25 ~~vWiDl~~Pt~e-----E~~~v~~~~gl~~pt~~~~eeIe~s----sR~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fi 95 (316)
T PRK11085 25 DAVWIDLVEPDDD-----ERLRVQSELGQSLATRPELEDIEAS----ARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFT 95 (316)
T ss_pred CCEEEEcCCCCHH-----HHHHHHHHhCCCCCChhhHHHHhhC----ceEEEECCeEEEEEEEEecCCCCCccceeEEEE
Confidence 4668776443221 235677889999 7788777653 5666666654444 3677899
Q ss_pred eecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017008 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (379)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~ 170 (379)
++.|+++++...++ +.|..+++|+..+.... .+... ..+.+||++++.+.+.+|....
T Consensus 96 l~~~~LvTvr~~~~---~~f~~~~~r~~~~~~~~-----------------~~~~~--vl~~Lld~iVd~~ad~lE~~~~ 153 (316)
T PRK11085 96 IRDGRLFTLREREL---PAFRLYRMRARSQTLVD-----------------GNAYE--LLLDLFETKIEQLADEIENIYS 153 (316)
T ss_pred EECCEEEEEecCCc---chHHHHHHHHHhCCccc-----------------CCHHH--HHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999988775 36788999886552100 11222 3344689999988888887766
Q ss_pred HHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCC
Q 017008 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWF 250 (379)
Q Consensus 171 ~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~ 250 (379)
+++.....+++.-....-.+.++++.++++.+..+++.+.++++++..+.+... . ....
T Consensus 154 ~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~-~-----~~~~--------------- 212 (316)
T PRK11085 154 DLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKAR-L-----PGGQ--------------- 212 (316)
T ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-C-----ChhH---------------
Confidence 666655544431000011234566777777777777777777777777764210 0 0000
Q ss_pred CCCCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017008 251 PASPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLV 329 (379)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~I 329 (379)
..+ .....+|++.+.+ .....+.+..+.+.+++..+|++|++||+||++|++|+|+|+|
T Consensus 213 ---------~~~-----------~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptli 272 (316)
T PRK11085 213 ---------LEQ-----------AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLV 272 (316)
T ss_pred ---------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1223344555554 3345566667777788889999999999999999999999999
Q ss_pred HhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 330 AGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 330 aGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
||+|||||++|||.+|+||||+++++|+++|++ +++||||||||
T Consensus 273 agiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~----~~~~f~rk~Wl 316 (316)
T PRK11085 273 ASSYGMNFEFMPELKWSFGYPGAIILMILAGLA----PYLYFKRKNWL 316 (316)
T ss_pred HhhcccccCCCCCCCCcHHHHHHHHHHHHHHHH----HHHHHHHcccC
Confidence 999999999999999999999999988777765 89999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.96 E-value=2.8e-27 Score=226.10 Aligned_cols=272 Identities=20% Similarity=0.256 Sum_probs=195.1
Q ss_pred ceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeEEEec--------------ccccee
Q 017008 26 SSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVLNL--------------EHIKAI 90 (379)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~Ilvnl--------------e~i~~I 90 (379)
+...|+.+++..+. . ...|.+++|+|+..+.. +++ +.+|++...++++.+.+ .++..+
T Consensus 2 ~~~~Wi~~~~~~~~-~----~~~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 74 (292)
T PF01544_consen 2 DGFVWIDLSGPDDE-E----LEWLAEEFGLHPLTIEDALDP--EERPRIEVFDDYLFIVLRAPEYEEEDDIDEESPLSFI 74 (292)
T ss_dssp SS-EEEEEETTTCH-H----HHHHHHTTTS-HHHHHHHCCT--SSSSEEEEETTEEEEEEEEEEESTTCCECCEEEEEEE
T ss_pred CccEEEEEeCCCHH-H----HHHHHHHhCcCHhHHHHHhCC--CcCCEEEEECCeEEEEEEEcchhhcccccccceEEEE
Confidence 35789999887776 2 36788899999999987 555 67889998888755543 247899
Q ss_pred eecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017008 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (379)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~ 170 (379)
++.+.+++++..+. ++++.+.+++..... ...-|+. ++..+++.+++.+...++
T Consensus 75 ~~~~~lit~~~~~~---~~~~~~~~~~~~~~~---------------------~~~~~~~--ll~~il~~~~~~~~~~l~ 128 (292)
T PF01544_consen 75 LGDNFLITVHRDPL---PFIDELRERLESRNE---------------------RPSSPED--LLYAILDEIVDDYFEVLE 128 (292)
T ss_dssp EETTEEEEEESSSS---HCHHHHHHHHHSTTC---------------------SCSSHHH--HHHHHHHHHHHHHHHHHH
T ss_pred EecceEEEEECCCC---hHHHHHHHHhhccCC---------------------CCCCHHH--HHHHHHHHHHHHHHHHHH
Confidence 99999999998763 567888888872111 1122343 577777777777777777
Q ss_pred HHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhhhhhhhhhcccccCCCCCCCCCCC
Q 017008 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD-DDDDMADLYLSRKMAGTSPVSGSGAANW 249 (379)
Q Consensus 171 ~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~-~d~dm~~m~Lt~~~~~~~~l~~~~~~~~ 249 (379)
.++..+..+.+.+.+......+.++..+|+++..+++.+.+.++++.++++ ...... ++...
T Consensus 129 ~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~----~~~~~------------- 191 (292)
T PF01544_consen 129 ELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFI----SDEDK------------- 191 (292)
T ss_dssp HHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTS----HCHHH-------------
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhh----hhhHH-------------
Confidence 888888777777766677778899999999999999999999999987776 221111 00000
Q ss_pred CCCCCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017008 250 FPASPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSL 328 (379)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~ 328 (379)
. + ..+..++++.+.+ ++...+.++.+.+.+.+..++++|+.|++||++|++|.|+||
T Consensus 192 ------------~--------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~ 249 (292)
T PF01544_consen 192 ------------E--------Y--LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTF 249 (292)
T ss_dssp ------------H--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------H--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1223334444444 556677777788888888999999999999999999999999
Q ss_pred HHhHhccCCCCCccccCcchHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 017008 329 VAGIFGMNIPYTWNENHGYMFKWV--VIFTAIFCAVTFVFIMSYARF 373 (379)
Q Consensus 329 IaGifGMN~~~~~e~~~~~~f~~v--~~~~~~~~~~l~~~~~~~fkr 373 (379)
|||+|||||.++|+.+|+|||+++ ++++++++ +++++||||
T Consensus 250 i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~----~~~~~~~kR 292 (292)
T PF01544_consen 250 ITGIFGMNFKGMPELDWPYGYFFVIILGLMILVA----ILLYWWFKR 292 (292)
T ss_dssp HTTSTTS-SS---SSSSSS-SHHH--HHHHHHHH----HHHHCCTTS
T ss_pred HHHHhhCCccCCCccCCccHHHHHHHHHHHHHHH----HHHHHheeC
Confidence 999999999999988899988766 44443333 357888876
No 7
>PRK09546 zntB zinc transporter; Reviewed
Probab=95.52 E-value=0.6 Score=45.56 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 017008 200 SAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 200 ~~L~~l~~~v~~vr~~l~~l 219 (379)
+++..+++.+..+|..+...
T Consensus 182 ~~l~~lrr~l~~lrr~l~p~ 201 (324)
T PRK09546 182 GELALLRKQLIVMRRYMAPQ 201 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554433
No 8
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=92.65 E-value=6.8 Score=38.21 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHhHhcc
Q 017008 287 LREYIDDTEDYINIQLDNHR-NQLIQLELFLSSGTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 287 l~e~i~~te~~i~i~Ld~~r-N~l~~i~~~LTi~t~i~~~~t~IaGifGM 335 (379)
+.+.++..++.++..+|... ---|+.+.++-++|.+-++++-.|=+.|-
T Consensus 232 ~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi 281 (322)
T COG0598 232 LIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF 281 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc
Confidence 44455555555555555533 33455666666666666666666666664
No 9
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=92.54 E-value=4.4 Score=38.16 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH--hccCCCCCccccCcch-HHHHHHHHHHHHH
Q 017008 287 LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGI--FGMNIPYTWNENHGYM-FKWVVIFTAIFCA 361 (379)
Q Consensus 287 l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGi--fGMN~~~~~e~~~~~~-f~~v~~~~~~~~~ 361 (379)
+++.++.+.+.....++...|+.++..-++|++-+-++..|-+.|. .||.....+.. +.+. ++.++++.++++.
T Consensus 211 ~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~p~~~~~~g-~~~~~~~~~~~~~~~~~~ 287 (292)
T PF01544_consen 211 LRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGMPELDWPYG-YFFVIILGLMILVAILLY 287 (292)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS---SSSSSS--SHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCccCCccH-HHHHHHHHHHHHHHHHHH
Confidence 4457778888888889999999999999999999999999999987 55876544443 4443 3445554554443
No 10
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=89.92 E-value=18 Score=34.89 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH-h-ccCCCCCccccCcchHHHHHHHHHHHHHH
Q 017008 288 REYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGI-F-GMNIPYTWNENHGYMFKWVVIFTAIFCAV 362 (379)
Q Consensus 288 ~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGi-f-GMN~~~~~e~~~~~~f~~v~~~~~~~~~~ 362 (379)
++.++.+.+...-..+...|+.++..-++|++-+..+..|-+.|. | ||=.-..+.. +++.. .+++++++++++
T Consensus 236 ~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~g-y~~~l-~~m~~i~~~~~~ 310 (318)
T TIGR00383 236 RELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYG-YPAVL-IVMAVIALGPLI 310 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhH-HHHHH-HHHHHHHHHHHH
Confidence 345566666677777889999999999999999999988888886 3 3544333333 55444 455555555555
No 11
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.38 E-value=18 Score=36.37 Aligned_cols=19 Identities=42% Similarity=0.347 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 017008 313 ELFLSSGTVSLSIYSLVAG 331 (379)
Q Consensus 313 ~~~LTi~t~i~~~~t~IaG 331 (379)
++.||++++++...+.+++
T Consensus 345 nllL~l~~vlLv~vSt~~~ 363 (395)
T PF10267_consen 345 NLLLTLLTVLLVFVSTVAN 363 (395)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567777776665555554
No 12
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=86.24 E-value=27 Score=32.13 Aligned_cols=74 Identities=14% Similarity=0.281 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhc--cCCCC----------Cccc-cCcchHHHHHHHHH--HHHHHHHH
Q 017008 301 QLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFG--MNIPY----------TWNE-NHGYMFKWVVIFTA--IFCAVTFV 365 (379)
Q Consensus 301 ~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGifG--MN~~~----------~~e~-~~~~~f~~v~~~~~--~~~~~l~~ 365 (379)
..+..+++...+.+-++++-++|+.+++|.-+-| |+|=. -... ++-|.|.|.++-.+ ++++++|+
T Consensus 139 ~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~~ig~~i 218 (230)
T PF03904_consen 139 SHEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIFAIGLFI 218 (230)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445677788888888888888888777763322 55521 1111 12244444333222 34566666
Q ss_pred HHHHHHHHh
Q 017008 366 FIMSYARFK 374 (379)
Q Consensus 366 ~~~~~fkrk 374 (379)
+++-|.|.|
T Consensus 219 ~l~~~~~~~ 227 (230)
T PF03904_consen 219 YLYEWIRAK 227 (230)
T ss_pred HHHHHHHHH
Confidence 677776654
No 13
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=83.03 E-value=48 Score=32.31 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhh
Q 017008 149 FEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMAD 228 (379)
Q Consensus 149 fe~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~ 228 (379)
-...+|-.+++.+++.+-+.++.++..+..+-..+..+..+.. +..+-+++.++++.+.++|+++..+.+-=.
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~---~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~---- 200 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDE---YDEALSTLAELEDIGWKVRLCLMDTQRALN---- 200 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4566788888888888888888888877665555543322223 444458899999999999999876643111
Q ss_pred hhhhhcccccCCCCCCCCCCCCCCCCccccchhhccccccccccCChhhHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 017008 229 LYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLE----LREYIDDTEDYINIQLDN 304 (379)
Q Consensus 229 m~Lt~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE----l~e~i~~te~~i~i~Ld~ 304 (379)
++.+. . + . .....+++..+.. +.++.+...+.++..+|.
T Consensus 201 -~l~~~-~----------------------~-----------~--~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~ 243 (316)
T PRK11085 201 -FLVRK-A----------------------R-----------L--PGGQLEQAREILRDIESLLPHNESLFQKVNFLMQA 243 (316)
T ss_pred -HHhhc-c----------------------c-----------C--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 0 0 0 1222233434333 677777777777777776
Q ss_pred HHHH-HHHHhHHHHHHHHHHHHHHHHHhHhcc
Q 017008 305 HRNQ-LIQLELFLSSGTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 305 ~rN~-l~~i~~~LTi~t~i~~~~t~IaGifGM 335 (379)
..+. -++.+.++-++|++-+++.-.+=+.|+
T Consensus 244 ~~~~i~~~~N~~mk~lTv~s~if~pptliagi 275 (316)
T PRK11085 244 AMGFINIEQNRIIKIFSVVSVVFLPPTLVASS 275 (316)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5544 467788888899988888888989998
No 14
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=81.67 E-value=23 Score=28.90 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhccCCC
Q 017008 295 EDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 295 e~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
-++....+.....++.. ...+.++..+++..+++...++..+-
T Consensus 20 i~La~~E~~~~~~~~~~-~~~~~~~a~vl~~~~l~~l~~al~~~ 62 (121)
T PF07332_consen 20 IELAKAELREKARRLGR-GLALLVLAAVLALLALLFLLVALVFA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 23444555555555555555555443
No 15
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=79.64 E-value=18 Score=26.84 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhCC
Q 017008 361 AVTFVFIMSYARFKGL 376 (379)
Q Consensus 361 ~~l~~~~~~~fkrk~w 376 (379)
+.++.+.+.|++++||
T Consensus 58 ~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 58 LTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3445577888888888
No 16
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=77.59 E-value=3 Score=39.19 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHH-hHhccCCCCCccc---cC--cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 317 SSGTVSLSIYSLVA-GIFGMNIPYTWNE---NH--GYMFKWVVIFTAIFCAVTFVFIMSYARFK 374 (379)
Q Consensus 317 Ti~t~i~~~~t~Ia-GifGMN~~~~~e~---~~--~~~f~~v~~~~~~~~~~l~~~~~~~fkrk 374 (379)
+-++.-++|++.-. .|+|||+.+.+.. +| .|+||.++++++++-+++.++.++|.+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 185 QPAEFRMVADVPARQTFWIMDVINANKGKVVKWLMKYPYQLMLSLTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred cCCccccCCCCccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444443333 3899999876654 12 24565555555433333333344444443
No 17
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=77.21 E-value=13 Score=30.12 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHHHhhcccchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017008 171 ELETAAYPALDELTSKISSRNLDRV----RKLKSAMTRLTARVQKVRDELEQLLD 221 (379)
Q Consensus 171 ~le~~~~~~ld~l~~~~~~~~L~~l----~~lk~~L~~l~~~v~~vr~~l~~ll~ 221 (379)
..+.++..+...+..-++.+.+.+| -.++.++..++.+++++....+-|++
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433444444555444332 24444444444444444444444443
No 18
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=75.12 E-value=8.9 Score=33.64 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 316 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 316 LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
.+.+.++++.+++...+|| .++ ..-|+|=++|.+++ +++..+.+..+|.+-|+
T Consensus 24 ~~lai~sl~~s~llI~lFg----~~~----~~nf~~NllGVil~-~~~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 24 ASLAILSLAFSQLLIALFG----GES----GGNFHWNLLGVILG-LLLTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHcC----CCC----CCceeeeHHHHHHH-HHHHHHHHHHHccChHH
Confidence 3344445566788888999 221 12244433333222 22333455577777664
No 19
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=72.02 E-value=1.7e+02 Score=32.51 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHhccCCCCCcc
Q 017008 321 VSLSIYSLVAGIFGMNIPYTWN 342 (379)
Q Consensus 321 ~i~~~~t~IaGifGMN~~~~~e 342 (379)
+++...+++.|++|-.=+-.|-
T Consensus 428 v~~~~lGLl~G~~G~~~~~~p~ 449 (806)
T PF05478_consen 428 VLCLLLGLLCGCCGYRRRADPT 449 (806)
T ss_pred HHHHHHHHHHhhccCCCCCCCc
Confidence 3455678899999976654444
No 20
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=71.56 E-value=14 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhccCCCCCc
Q 017008 310 IQLELFLSSGTVSLSIYSLVAGIFGMNIPYTW 341 (379)
Q Consensus 310 ~~i~~~LTi~t~i~~~~t~IaGifGMN~~~~~ 341 (379)
.+-.-.++++...++.++++..+.|.=++.-+
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~ 70 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHY 70 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345688999999999999999999886544
No 21
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=67.88 E-value=2e+02 Score=31.85 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=7.1
Q ss_pred HHHhHHHHHHHHhh
Q 017008 172 LETAAYPALDELTS 185 (379)
Q Consensus 172 le~~~~~~ld~l~~ 185 (379)
++..+.+.|+.+.+
T Consensus 230 l~~~~~~~L~~i~~ 243 (806)
T PF05478_consen 230 LGSNVYPALDSILD 243 (806)
T ss_pred HhhhhHHHHHHHHH
Confidence 44555555555444
No 22
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=66.04 E-value=9.6 Score=31.78 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHhHhccCCCCCc-------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017008 325 IYSLVAGIFGMNIPYTW-------NENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 375 (379)
Q Consensus 325 ~~t~IaGifGMN~~~~~-------e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~ 375 (379)
...+.=+...+|=...+ ..+..+.|++++.+|++.++.++.+|+.|.|-||
T Consensus 13 L~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 13 LSKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp HHHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677677633222 1123456788888888888888889999999776
No 23
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=64.13 E-value=20 Score=30.87 Aligned_cols=68 Identities=12% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 305 HRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFK 374 (379)
Q Consensus 305 ~rN~l~~i~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk 374 (379)
...+..++-++-+++|+.++...++.|++=+++. ++.. +-..|+|..+...-...++..+.+.+.++|
T Consensus 58 y~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~-~Wsl-siM~wYWll~LlLyl~tiisLViLVf~n~k 125 (161)
T PF13042_consen 58 YDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLG-KWSL-SIMMWYWLLILLLYLITIISLVILVFVNRK 125 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3455666778899999999999999999988874 2223 334455555443333223333344454444
No 24
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=63.75 E-value=38 Score=30.03 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017008 162 CSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLL 220 (379)
Q Consensus 162 ~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll 220 (379)
+-.+|.+++.+|....+..|.+. ..++.-..+|++++.++.++..+.+-+.++|
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777666555555443 2233333445555555555555444444443
No 25
>PRK02935 hypothetical protein; Provisional
Probab=62.48 E-value=65 Score=26.07 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 017008 366 FIMSYAR 372 (379)
Q Consensus 366 ~~~~~fk 372 (379)
....|||
T Consensus 54 S~vvYFw 60 (110)
T PRK02935 54 STVVYFW 60 (110)
T ss_pred HHHHHHH
Confidence 4455554
No 26
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=62.43 E-value=6.5 Score=32.28 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHH
Q 017008 313 ELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFC 360 (379)
Q Consensus 313 ~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~ 360 (379)
+.++.++|.++...|+|.|++ |+..|-. .-+-|+.++++.+.++
T Consensus 31 nliiG~vT~l~VLvtii~afv---f~~~~p~-p~~iffavcI~l~~~s 74 (118)
T PF10856_consen 31 NLIIGAVTSLFVLVTIISAFV---FPQDPPK-PLHIFFAVCILLICIS 74 (118)
T ss_pred EeehHHHHHHHHHHHHhheEE---ecCCCCC-ceEEehHHHHHHHHHH
Confidence 356778888887778777764 3322211 2234555555444333
No 27
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=58.13 E-value=40 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHhHhccCC
Q 017008 298 INIQLDNHRNQLIQLELFLSSGT------VSLSIYSLVAGIFGMNI 337 (379)
Q Consensus 298 i~i~Ld~~rN~l~~i~~~LTi~t------~i~~~~t~IaGifGMN~ 337 (379)
+.-.+|--+.+-..+.-.||+.+ +++.++-.+||+||.|=
T Consensus 54 v~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvygi~k 99 (169)
T COG5130 54 VFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeeehhh
Confidence 33344433333333334444444 45667788999999985
No 28
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=56.69 E-value=15 Score=27.25 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 375 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~ 375 (379)
|+-|-++-..+.+++..++++.==...|++ |++.-++++.+ + .++-...=+|||+|+
T Consensus 3 ki~tg~aYgtSag~~~~wl~~lld~~sp~q---W~aIGvi~gi~-~-~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 3 KITTGAAYGTSAGSAGYWLLQLLDQFSPSQ---WAAIGVIGGIF-F-GLLTYLTNLYFKIKE 59 (68)
T ss_pred hhhhhhccccchhhHHHHHHHHHhccCccc---chhHHHHHHHH-H-HHHHHHhHhhhhhhH
Confidence 444555555555666666666432333444 55544444222 2 223334668888763
No 29
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=56.32 E-value=34 Score=32.68 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=11.0
Q ss_pred HHHHHHHHhhcCChh
Q 017008 211 KVRDELEQLLDDDDD 225 (379)
Q Consensus 211 ~vr~~l~~ll~~d~d 225 (379)
++-+.++++..|+.+
T Consensus 111 el~e~~~~~fg~e~~ 125 (295)
T TIGR01478 111 ELLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHHhCCccc
Confidence 356677778888887
No 30
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=56.19 E-value=84 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017008 293 DTEDYINIQLDNHRNQLIQLELFLSSGTVSLS 324 (379)
Q Consensus 293 ~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~ 324 (379)
+.++...-+.+..||..|+..-.+.+..++++
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~~lH~igvp~~~~~ 34 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINRALHFIGVPLIIFS 34 (95)
T ss_pred CHHHHHHHHHHHcCCHhhHHHHHHHHHHHHHH
Confidence 45667788889999999987665555444443
No 31
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=54.40 E-value=63 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhccCCCC
Q 017008 312 LELFLSSGTVSLSIYSLVAGIFGMNIPY 339 (379)
Q Consensus 312 i~~~LTi~t~i~~~~t~IaGifGMN~~~ 339 (379)
++..||+++=+.-..-++.|+.+| +.+
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 445778877777777888899888 543
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.42 E-value=22 Score=31.64 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhc
Q 017008 314 LFLSSGTVSLSIYSLVAGIFG 334 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifG 334 (379)
++++++.+++++.-+++|+-|
T Consensus 5 ~i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 5 RIISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666667666
No 33
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=52.79 E-value=65 Score=25.61 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCC
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
..+.++.+++++++.++|+.=+...
T Consensus 6 ~wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 6 FWLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566778888889999999888776
No 34
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=52.25 E-value=14 Score=28.07 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFK--GLVG 378 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk--~wl~ 378 (379)
+..+.+-.++++.+|+.|++=-|+.++ ++ +.++.+++++++++=-|-+++|. +|++
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~~~--------~~-~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~ 68 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFSYT--------FY-IYGAGVVLTLLVVVPPWPFYNRHPLKWLP 68 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHhheeCCcHhhcCCcccCCC
Confidence 455566666777888999886655433 32 22223333344444456666655 4554
No 35
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=51.86 E-value=1e+02 Score=25.31 Aligned_cols=6 Identities=0% Similarity=0.207 Sum_probs=3.0
Q ss_pred HHHHHH
Q 017008 306 RNQLIQ 311 (379)
Q Consensus 306 rN~l~~ 311 (379)
+|++|+
T Consensus 5 ~~KiN~ 10 (114)
T PF11023_consen 5 SSKINK 10 (114)
T ss_pred hhHHHH
Confidence 345554
No 36
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=51.54 E-value=61 Score=30.25 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=12.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhc
Q 017008 307 NQLIQLELFLSSGTVSLSIYSLVAGIFG 334 (379)
Q Consensus 307 N~l~~i~~~LTi~t~i~~~~t~IaGifG 334 (379)
++..+..+.+.+.+++=+...++.|.++
T Consensus 6 ~~~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 6 KRILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 37
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=2e+02 Score=26.52 Aligned_cols=32 Identities=6% Similarity=0.305 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017008 191 NLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (379)
Q Consensus 191 ~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~ 222 (379)
....|.+.|.-|....+....+|.-+....+.
T Consensus 87 ~~htL~RHrEILqdy~qef~rir~n~~a~~e~ 118 (231)
T KOG3208|consen 87 VMHTLQRHREILQDYTQEFRRIRSNIDAKRER 118 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444455444444433
No 38
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=50.91 E-value=84 Score=27.92 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 193 DRVRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 193 ~~l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
-+|.+.|+++-++..+++.+...+.++
T Consensus 118 Yqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 118 YQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999888874
No 39
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=50.75 E-value=97 Score=22.69 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 313 ELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 313 ~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
+|.+-++.+++++.++-.|+|-|-=+-+ .. .+.... ++.=+..+++++ +++.+.-+-||+
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~l~kd~~-~~-~rm~~~--L~~RV~lS~~l~-~lil~~~~~G~i 60 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFFLVKDKG-SS-KRMVKA--LGRRVGLSALLF-LLILIALYTGWI 60 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-chHHHH--HHHHHHHHHHHH-HHHHHHHHhCCC
Confidence 4677788899999999999999976533 22 333222 222222223222 345566667877
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.73 E-value=27 Score=29.18 Aligned_cols=13 Identities=8% Similarity=-0.136 Sum_probs=6.5
Q ss_pred chHHHHHHHHHHH
Q 017008 347 YMFKWVVIFTAIF 359 (379)
Q Consensus 347 ~~f~~v~~~~~~~ 359 (379)
--.++++++|+++
T Consensus 65 ~i~~Ii~gv~aGv 77 (122)
T PF01102_consen 65 AIIGIIFGVMAGV 77 (122)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHH
Confidence 3455555555444
No 41
>PTZ00370 STEVOR; Provisional
Probab=50.17 E-value=49 Score=31.67 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCChh
Q 017008 211 KVRDELEQLLDDDDD 225 (379)
Q Consensus 211 ~vr~~l~~ll~~d~d 225 (379)
++-+.++++..|+.+
T Consensus 110 el~e~~ee~fg~~~~ 124 (296)
T PTZ00370 110 ELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCccc
Confidence 356778888888888
No 42
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.04 E-value=49 Score=26.94 Aligned_cols=34 Identities=21% Similarity=0.023 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHhccCCCCCccc-cCcchHHH
Q 017008 318 SGTVSLSIYSLVAGIFGMNIPYTWNE-NHGYMFKW 351 (379)
Q Consensus 318 i~t~i~~~~t~IaGifGMN~~~~~e~-~~~~~f~~ 351 (379)
.++++.....+++++.+.|.-.++.. -+||.|.+
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFil 37 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILAPPRPAFDPYPFIL 37 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCCCCCccHHH
Confidence 46788889999999999999654431 24666643
No 43
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=48.97 E-value=28 Score=34.51 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhccCCC
Q 017008 295 EDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 295 e~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
+++....|++.+..-.+--..-|++++.+-..--..=+.||++-
T Consensus 18 ~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 18 QNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 34455556555545455555566666666555555557788873
No 44
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=47.85 E-value=45 Score=26.32 Aligned_cols=27 Identities=19% Similarity=-0.116 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhccCCC
Q 017008 312 LELFLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 312 i~~~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
.+++|+.+..++.....+.+++...+.
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888766555555544443
No 45
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=47.67 E-value=3.1e+02 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhccCCCCCccc
Q 017008 312 LELFLSSGTVSLSIYSLVAGIFGMNIPYTWNE 343 (379)
Q Consensus 312 i~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~ 343 (379)
++.+|..+++++...+.|+ |+..|+-.
T Consensus 393 iNiiLalm~VlLvfVSTIa-----~~v~PLmk 419 (455)
T KOG3850|consen 393 INIILALMTVLLVFVSTIA-----NCVSPLMK 419 (455)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hhccHHhh
Confidence 4455556665554444444 66666544
No 46
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=46.77 E-value=47 Score=25.23 Aligned_cols=68 Identities=7% Similarity=-0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH---HHHHhHhccCCCCCccccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Q 017008 305 HRNQLIQLELFLSSGTVSLSIY---SLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCA-VTFVFIMSYARFKGL 376 (379)
Q Consensus 305 ~rN~l~~i~~~LTi~t~i~~~~---t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~-~l~~~~~~~fkrk~w 376 (379)
.|+++.+..+.+-+--++.... -++++.++.|- .-.. .| .||..++.++..+. +.+=+++..+++|.|
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~--~~~~-~p-~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMY--EIGH-GP-SFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCC-CC-chHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 3556666666665555554443 34555555552 2112 22 23333332322222 222245555666666
No 47
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.01 E-value=1.4e+02 Score=25.02 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 195 VRKLKSAMTRLTARVQKVRDELEQ 218 (379)
Q Consensus 195 l~~lk~~L~~l~~~v~~vr~~l~~ 218 (379)
+-.++..+..+...+..++.++..
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 48
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=45.28 E-value=44 Score=20.35 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 017008 348 MFKWVVIFTAIFCAVTFVF 366 (379)
Q Consensus 348 ~f~~v~~~~~~~~~~l~~~ 366 (379)
-|-|++++..++++.++.+
T Consensus 3 YfaWilG~~lA~~~~i~~a 21 (28)
T PF08173_consen 3 YFAWILGVLLACAFGILNA 21 (28)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3566777666555554433
No 49
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=45.27 E-value=24 Score=28.44 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.7
Q ss_pred chHHHHHHHH
Q 017008 347 YMFKWVVIFT 356 (379)
Q Consensus 347 ~~f~~v~~~~ 356 (379)
|.||.+++++
T Consensus 22 w~FWlv~~li 31 (102)
T PF11669_consen 22 WYFWLVWVLI 31 (102)
T ss_pred HHHHHHHHHH
Confidence 4455544443
No 50
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=43.10 E-value=35 Score=21.05 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 017008 367 IMSYARFK 374 (379)
Q Consensus 367 ~~~~fkrk 374 (379)
.+.+.|||
T Consensus 25 ~~~~~~rk 32 (34)
T TIGR01167 25 GLLLRKRK 32 (34)
T ss_pred HHHheecc
Confidence 44444444
No 51
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=42.87 E-value=35 Score=27.97 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 318 SGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 318 i~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
+.+.+++...++.--+=|.+.+.+|..-++....+..++++++.. ..-.-.++|+|+
T Consensus 12 ~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~---~a~~~~~~kG~l 68 (116)
T PF12670_consen 12 LVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGF---YAGRKAGSKGWL 68 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHccchHH
Confidence 334444433333334557777767764444433333333333322 345566677775
No 52
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=41.40 E-value=75 Score=22.28 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHH
Q 017008 315 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIF 359 (379)
Q Consensus 315 ~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~ 359 (379)
..+-++++++...+..|+| |.+ +.. |.-||+.+..++.+.
T Consensus 3 ~~~~~~f~i~~~~~~iGl~--~~~--~~l-~~KGy~~~~~l~~l~ 42 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLW--NAP--LDL-SEKGYYAMGLLFLLF 42 (53)
T ss_pred hHHHHHHHHHHHHHHHHHH--hCC--CCH-HHHHHHHHHHHHHHH
Confidence 3566788888999999999 554 233 556887655544433
No 53
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=41.23 E-value=1.6e+02 Score=22.55 Aligned_cols=26 Identities=8% Similarity=-0.069 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCCCC
Q 017008 315 FLSSGTVSLSIYSLVAGIFGMNIPYT 340 (379)
Q Consensus 315 ~LTi~t~i~~~~t~IaGifGMN~~~~ 340 (379)
..|++.+++-..--..+.||..-..+
T Consensus 8 ~~tl~l~l~yf~~W~~~ay~~~~~~~ 33 (80)
T PF06196_consen 8 RWTLGLTLIYFAWWYGFAYGLGNGDG 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 34555555555666777888875544
No 54
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.20 E-value=45 Score=26.58 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=22.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 345 HGYMFKWVVIFTAIFCAVTFVFIMSYARF 373 (379)
Q Consensus 345 ~~~~f~~v~~~~~~~~~~l~~~~~~~fkr 373 (379)
.||.-+.++..++++++.++++++++.|+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56766677777888888888888887754
No 55
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=40.95 E-value=1.5e+02 Score=23.44 Aligned_cols=10 Identities=30% Similarity=0.278 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 017008 315 FLSSGTVSLS 324 (379)
Q Consensus 315 ~LTi~t~i~~ 324 (379)
.+.+++++++
T Consensus 20 ~~~~~~i~~~ 29 (112)
T PF14015_consen 20 RLRIASIILS 29 (112)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 56
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=40.43 E-value=65 Score=27.59 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=8.0
Q ss_pred HHHHHHHHhCCCC
Q 017008 366 FIMSYARFKGLVG 378 (379)
Q Consensus 366 ~~~~~fkrk~wl~ 378 (379)
..+.+||||+-++
T Consensus 73 ~~~lffkr~~~~P 85 (149)
T PF10754_consen 73 LLYLFFKRKRRFP 85 (149)
T ss_pred HHHHHHHccchhH
Confidence 4555678876543
No 57
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=40.19 E-value=29 Score=37.80 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 348 MFK-WVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 348 ~f~-~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
.|. .++++++++.++++.++++|||||.|=
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 453 355556666677777889999998763
No 58
>PRK14749 hypothetical protein; Provisional
Probab=40.18 E-value=83 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 017008 347 YMFKWVVIFTAIFCAVTFVFIMS 369 (379)
Q Consensus 347 ~~f~~v~~~~~~~~~~l~~~~~~ 369 (379)
|-|-|++++..+++..+.-+++.
T Consensus 2 WYfaWiLG~~lAc~f~ilna~w~ 24 (30)
T PRK14749 2 WYLLWFVGILLMCSLSTLVLVWL 24 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777666665554444443
No 59
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.80 E-value=2.7e+02 Score=24.44 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017008 196 RKLKSAMTRLTARVQKVRDELE 217 (379)
Q Consensus 196 ~~lk~~L~~l~~~v~~vr~~l~ 217 (379)
..++.+...|++.+..+++.|.
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444443
No 60
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.57 E-value=91 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 196 RKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 196 ~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
..--+++..|++.+..+++-+..+
T Consensus 28 ~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 28 TEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555554444444443
No 61
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=37.91 E-value=68 Score=19.88 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 017008 348 MFKWVVIFTAIFCAVTF 364 (379)
Q Consensus 348 ~f~~v~~~~~~~~~~l~ 364 (379)
-|-|++++..++++.++
T Consensus 3 YfaWilG~~lA~~~~v~ 19 (30)
T TIGR02106 3 YFAWILGTLLACAFGVL 19 (30)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35566665555544433
No 62
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=37.90 E-value=1.1e+02 Score=27.30 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCCCCccc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIPYTWNE-NHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 375 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~~~~e~-~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~ 375 (379)
.+|++++.++..+++ +++=+..++-.. ....++++++.+.+++++ ..+|-|++.|
T Consensus 26 lvLgvVs~~iL~F~~---~~~~~~~~~~~~~G~~~gl~~a~~gl~~l~~----si~~~fry~R 81 (183)
T PF12263_consen 26 LVLGVVSAVILLFAN---LFSGRATSPNRNPGLGIGLFLAICGLVALFF----SIFWSFRYTR 81 (183)
T ss_pred HHHHHHHHHHHHHHh---hccccCCCCCcCCCcchHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 567777766655554 344444443221 123456555555544433 3555555543
No 63
>PRK04406 hypothetical protein; Provisional
Probab=37.85 E-value=1.4e+02 Score=22.56 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 163 SFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 163 ~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
+.+++++.+||..+....+.+.+ .+ +.|..-.+.+..|++.+..+.+-+..+
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~-LN----~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEE-LN----DALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666666666665433222211 11 134444555566666655555555443
No 64
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.69 E-value=1e+02 Score=27.78 Aligned_cols=24 Identities=4% Similarity=0.340 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCC
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
+.+.++..++.+..++..+..+ ++
T Consensus 148 k~~~~~~~~~~~w~~~~~~~~~-lp 171 (206)
T PF06570_consen 148 KYILISVLAMVLWIVIFVLTSF-LP 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cc
Confidence 3444444444444444445555 44
No 65
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=37.47 E-value=55 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCChhhhh
Q 017008 191 NLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDMAD 228 (379)
Q Consensus 191 ~L~~l~~lk~~L~~l~~~v~~---vr~~l~~ll~~d~dm~~ 228 (379)
.|.+|..+|++|..|+..+.. +|+.|++++.+.+.+..
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~ 150 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEK 150 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHH
Confidence 366788888899888888754 89999999999887654
No 66
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=36.55 E-value=2.2e+02 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017008 195 VRKLKSAMTRLTARVQKVRDEL 216 (379)
Q Consensus 195 l~~lk~~L~~l~~~v~~vr~~l 216 (379)
+..++.++..|++++..+.+.+
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666665555443
No 67
>PRK02119 hypothetical protein; Provisional
Probab=36.53 E-value=1.4e+02 Score=22.37 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 164 FLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 164 ~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
.+++++.+||..+..-.+.+.+ .+ +.|..-.+.+..|++.+..+.+-+..+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~-LN----~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEE-LN----QALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666655433222211 11 134444555555666555555555443
No 68
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.49 E-value=3e+02 Score=26.98 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017008 172 LETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (379)
Q Consensus 172 le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~ 221 (379)
+......+.+.......=.....|..+-++|.+|+++++.++..|+++..
T Consensus 268 lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 268 LRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444333233445666677788888888888887777643
No 69
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.98 E-value=2.6e+02 Score=23.43 Aligned_cols=31 Identities=3% Similarity=0.072 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017008 153 ALEVALEAICSFLAARTTELETAAYPALDEL 183 (379)
Q Consensus 153 ~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l 183 (379)
|-.-=+...|..+...++.+-+.+...=+.|
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444333333
No 70
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.61 E-value=1.1e+02 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCCCCc
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIPYTW 341 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~~~~ 341 (379)
.++..+++..+.+.+.+.+-||=|+...
T Consensus 8 ivlAtiavFiaLagl~~~I~GlLfD~~~ 35 (62)
T PF11177_consen 8 IVLATIAVFIALAGLAAVIHGLLFDEER 35 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4677777778888889999999876543
No 71
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=35.49 E-value=2.5e+02 Score=23.44 Aligned_cols=8 Identities=13% Similarity=0.168 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 017008 366 FIMSYARF 373 (379)
Q Consensus 366 ~~~~~fkr 373 (379)
.++.++++
T Consensus 118 ~~~~~l~~ 125 (139)
T PF01618_consen 118 PFYNYLKR 125 (139)
T ss_pred HHHHHHHH
Confidence 34444443
No 72
>COG4244 Predicted membrane protein [Function unknown]
Probab=35.05 E-value=1.6e+02 Score=25.80 Aligned_cols=32 Identities=9% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhccCCCCC
Q 017008 309 LIQLELFLSSGTVSLSIYSLVAGIFGMNIPYT 340 (379)
Q Consensus 309 l~~i~~~LTi~t~i~~~~t~IaGifGMN~~~~ 340 (379)
-.+.-..+...+++++..++++|+|++=+--+
T Consensus 47 ~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~ 78 (160)
T COG4244 47 WFDVSWWNLFAALIAGFFAVIAGLFEFLLARP 78 (160)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44555677888999999999999999976433
No 73
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.66 E-value=1.5e+02 Score=22.24 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 165 LAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 165 Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
+++++.+||..+....+.+.+ .+ +.|.+-.+.+..+++.+..+.+-+..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~-Ln----~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEE-LN----VTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666655432222211 11 134444555566666665555555543
No 74
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=34.54 E-value=69 Score=21.64 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=4.2
Q ss_pred HHHHHHHhC
Q 017008 367 IMSYARFKG 375 (379)
Q Consensus 367 ~~~~fkrk~ 375 (379)
++.+.++++
T Consensus 23 ~~~~~~~r~ 31 (46)
T PF04995_consen 23 VWSLRRRRR 31 (46)
T ss_pred HHHHHHHHH
Confidence 444455444
No 75
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=34.54 E-value=56 Score=22.03 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=3.9
Q ss_pred HHHHHHHhC
Q 017008 367 IMSYARFKG 375 (379)
Q Consensus 367 ~~~~fkrk~ 375 (379)
.+.+.++|+
T Consensus 24 ~~~~~~~r~ 32 (45)
T TIGR03141 24 LWSLLDRRR 32 (45)
T ss_pred HHHHHHHHH
Confidence 344444443
No 76
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=33.70 E-value=94 Score=21.28 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=7.0
Q ss_pred HHHHHHhHhcc
Q 017008 325 IYSLVAGIFGM 335 (379)
Q Consensus 325 ~~t~IaGifGM 335 (379)
.+.++++.+|+
T Consensus 10 vGg~l~~~lg~ 20 (48)
T PF04226_consen 10 VGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHhcc
Confidence 45666666666
No 77
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=33.38 E-value=10 Score=30.20 Aligned_cols=9 Identities=0% Similarity=-0.286 Sum_probs=3.8
Q ss_pred HHHHHHHhC
Q 017008 367 IMSYARFKG 375 (379)
Q Consensus 367 ~~~~fkrk~ 375 (379)
.|||++|+|
T Consensus 87 ~w~f~~r~k 95 (96)
T PTZ00382 87 CWWFVCRGK 95 (96)
T ss_pred hheeEEeec
Confidence 344444443
No 78
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=32.84 E-value=15 Score=32.36 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhc
Q 017008 315 FLSSGTVSLSIYSLVAGIFG 334 (379)
Q Consensus 315 ~LTi~t~i~~~~t~IaGifG 334 (379)
.++++.++++...+.+|+|.
T Consensus 8 ~~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 8 FLNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445554455556665
No 79
>PRK04325 hypothetical protein; Provisional
Probab=32.60 E-value=1.7e+02 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 195 VRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 195 l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
|..-.+.+..|++.+.-+.+-+..+
T Consensus 32 v~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 32 VARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555544443
No 80
>PRK00295 hypothetical protein; Provisional
Probab=32.16 E-value=2e+02 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 195 VRKLKSAMTRLTARVQKVRDELEQ 218 (379)
Q Consensus 195 l~~lk~~L~~l~~~v~~vr~~l~~ 218 (379)
|.+-.+.+..|++.+..+.+-+..
T Consensus 28 v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 28 LVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444444
No 81
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.62 E-value=3.4e+02 Score=24.06 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=30.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 147 SPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 147 lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
|-.-|.-|...++.+-..|+.++++++..+. ++-.+.+++..|+.++.-+...|+.+
T Consensus 107 L~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~----------------~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 107 LSSTFARLCQQVDQTKNELEDEIKQLEKEIQ----------------RLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445777777777777777766666543 33333444555555555555555544
No 82
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=31.49 E-value=1.4e+02 Score=22.60 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhccCCCCCcc-cc-----CcchHHHHHHHHHHHHHHHHHHHHHH
Q 017008 314 LFLSSGTVSLSIYSLVAGIFGMNIPYTWN-EN-----HGYMFKWVVIFTAIFCAVTFVFIMSY 370 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~IaGifGMN~~~~~e-~~-----~~~~f~~v~~~~~~~~~~l~~~~~~~ 370 (379)
|+|-+++.+..+.+.++.++---+-+.|- .. +..+-.++..++++-++++|.+.|.+
T Consensus 12 kilkimsviyli~sil~afs~~sli~~~gf~~is~s~sg~a~g~~~lgsifqsvlvf~giwvf 74 (87)
T PF13140_consen 12 KILKIMSVIYLIVSILMAFSAGSLIHNPGFGEISISGSGGAIGIIILGSIFQSVLVFCGIWVF 74 (87)
T ss_pred eHHHHHHHHHHHHHHHHHHhccccccCCCCCeeEeecCCceeeeeehHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555532221 10 11122234445555566666555443
No 83
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.48 E-value=1e+02 Score=23.41 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=25.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 017008 186 KISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (379)
Q Consensus 186 ~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~ 224 (379)
+.+.++.++|.++-.+..+++.++ ++|+++++.|.
T Consensus 35 gLs~~d~~~L~~L~~~a~rm~eRI----~tLE~ILdae~ 69 (75)
T PF06667_consen 35 GLSEEDEQRLQELYEQAERMEERI----ETLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 456666777888888888888888 56666776553
No 84
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.42 E-value=1e+02 Score=23.37 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=24.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 017008 187 ISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (379)
Q Consensus 187 ~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~ 224 (379)
.+.++.+++.++-.+..+++.++ ++||++++.+.
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI----~tLE~ILd~e~ 69 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERI----DTLERILDAEH 69 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 45556677777788888888888 56777777664
No 85
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=31.36 E-value=62 Score=28.30 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCChhhhh
Q 017008 191 NLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDMAD 228 (379)
Q Consensus 191 ~L~~l~~lk~~L~~l~~~v~~---vr~~l~~ll~~d~dm~~ 228 (379)
.|.+|..+|+.|..|+..+.. +|+.|++++.|++.+..
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~ 151 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEK 151 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHH
Confidence 366788889999999888754 99999999988876653
No 86
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=31.22 E-value=3.2e+02 Score=23.04 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 017008 198 LKSAMTRLTARVQKVRDELEQLL 220 (379)
Q Consensus 198 lk~~L~~l~~~v~~vr~~l~~ll 220 (379)
-++++..|+.++..+...++++-
T Consensus 107 s~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 107 SRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777666654
No 87
>PRK02870 heat shock protein HtpX; Provisional
Probab=30.99 E-value=2.1e+02 Score=28.22 Aligned_cols=30 Identities=27% Similarity=0.124 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhc
Q 017008 305 HRNQLIQLELFLSSGTVSLSIYSLVAGIFG 334 (379)
Q Consensus 305 ~rN~l~~i~~~LTi~t~i~~~~t~IaGifG 334 (379)
.+|++-...+....+.+.+.++.++.|+||
T Consensus 18 ~~n~~kt~~l~~~~~~l~~~~g~~~~~~~~ 47 (336)
T PRK02870 18 RRNRLKTRAVIATYLAIFLFIGLLVDAIRI 47 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 456554444444444445556677777887
No 88
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=29.59 E-value=3.1e+02 Score=22.51 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017008 193 DRVRKLKSAMTRLTARVQKVR 213 (379)
Q Consensus 193 ~~l~~lk~~L~~l~~~v~~vr 213 (379)
+.+..|+.++.+|+..+..+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666555443
No 89
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=29.11 E-value=2.7e+02 Score=24.17 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHH
Q 017008 305 HRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFT 356 (379)
Q Consensus 305 ~rN~l~~i~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~ 356 (379)
+.|+|.+-|.+.+-+=+.+++++|++..|=.= ....+. .+|..+.+..+.
T Consensus 57 Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~-~~~~dv-P~~~~~~~S~~~ 106 (153)
T PF11947_consen 57 VSNRMLRRMAVFVGIPTALGVAVFVVFYYLKS-RQIVDV-PPWAVLLVSLVF 106 (153)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHh-cccccc-CchHHHHHHHHH
Confidence 78899988888888888888888877665443 233444 455444444433
No 90
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=29.03 E-value=1.3e+02 Score=20.09 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 017008 361 AVTFVFIMSYARFK 374 (379)
Q Consensus 361 ~~l~~~~~~~fkrk 374 (379)
+++.+...+||.||
T Consensus 23 igm~~~~~~~F~~k 36 (42)
T PF11346_consen 23 IGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334466777766
No 91
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=29.02 E-value=5.9e+02 Score=26.46 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhcCCh
Q 017008 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQK-----VRDELEQLLDDDD 224 (379)
Q Consensus 150 e~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~-----vr~~l~~ll~~d~ 224 (379)
++..||.+++.+...++.+-+.|..... +|..-.+.-+.+...-+-.+|+....|+..+.. ..|++++.++--.
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L~~-AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsa 219 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRLAR-ALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSA 219 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccH
Confidence 4557999999988888888777776543 232222223344455567788888888887766 5577777777666
Q ss_pred hhh
Q 017008 225 DMA 227 (379)
Q Consensus 225 dm~ 227 (379)
|++
T Consensus 220 eVl 222 (508)
T PF00901_consen 220 EVL 222 (508)
T ss_pred HHH
Confidence 654
No 92
>COG3462 Predicted membrane protein [Function unknown]
Probab=28.83 E-value=3.2e+02 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhHhc
Q 017008 316 LSSGTVSLSIYSLVAGIFG 334 (379)
Q Consensus 316 LTi~t~i~~~~t~IaGifG 334 (379)
+.+++++....-.-.|+||
T Consensus 13 igliavi~~v~li~~~~~g 31 (117)
T COG3462 13 IGLIAVIAVVGLIPSGFHG 31 (117)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 3444444444444445555
No 93
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.79 E-value=1.5e+02 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017008 197 KLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 197 ~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
.+|++..+++..+..+.+-+.++
T Consensus 18 tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544444444433
No 94
>PRK13682 hypothetical protein; Provisional
Probab=28.74 E-value=55 Score=22.90 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhHhcc
Q 017008 319 GTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 319 ~t~i~~~~t~IaGifGM 335 (379)
++.+|.+.++|+|+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57788888999999996
No 95
>PRK08456 flagellar motor protein MotA; Validated
Probab=28.49 E-value=1.2e+02 Score=28.50 Aligned_cols=44 Identities=20% Similarity=0.062 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHh--ccCCCCCccccCcchHHHHHHHHHHHHH
Q 017008 315 FLSSGTVSLSIYSLVAGIF--GMNIPYTWNENHGYMFKWVVIFTAIFCA 361 (379)
Q Consensus 315 ~LTi~t~i~~~~t~IaGif--GMN~~~~~e~~~~~~f~~v~~~~~~~~~ 361 (379)
..|++.++++.+.++.|++ |=|+...+ ++.++.+|++++++..+
T Consensus 3 ~~tiiG~~~~~~~i~~~~~~~gg~~~~~~---~~~~~~IV~Ggt~~a~~ 48 (257)
T PRK08456 3 LSTILGMVLAVASISVGDILEGGNPLHVI---HLSSFIIVVPTALFAAM 48 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHh---hHhHHHHHHHHHHHHHH
Confidence 4678888888888888855 54543322 45677777777655443
No 96
>PRK00846 hypothetical protein; Provisional
Probab=28.35 E-value=2.5e+02 Score=21.45 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017008 197 KLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 197 ~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
...+.+..+++.+.-+.+-+..+
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445444444444433
No 97
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=27.65 E-value=1.4e+02 Score=19.57 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=4.3
Q ss_pred HHHHHHHhC
Q 017008 367 IMSYARFKG 375 (379)
Q Consensus 367 ~~~~fkrk~ 375 (379)
++.-|.+||
T Consensus 24 ~~YaCcykk 32 (38)
T PF02439_consen 24 FYYACCYKK 32 (38)
T ss_pred HHHHHHHcc
Confidence 333455554
No 98
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.33 E-value=1.2e+02 Score=21.56 Aligned_cols=34 Identities=15% Similarity=0.483 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhh
Q 017008 197 KLKSAMTRLTARVQKVRDELEQLLDDDDDMADLY 230 (379)
Q Consensus 197 ~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~ 230 (379)
.+...+..+++..+.+++.++++-++=.++..+|
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666655555555444
No 99
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=27.12 E-value=2e+02 Score=23.91 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017008 316 LSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVG 378 (379)
Q Consensus 316 LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl~ 378 (379)
....++|...+.++.-+.|+=+..+- +-.|-.+ +.++.+..-.|++||+|++
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~a---NVGGVGi--------AMlLLi~~~~~l~k~G~l~ 57 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVKA---NVGGVGI--------AMILLIISKELLAKRGHLP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc---ccchHHH--------HHHHHHHHHHHHHHcCCCC
Confidence 45667777888888888888775442 1122211 1222223668999999986
No 100
>PF15431 TMEM190: Transmembrane protein 190
Probab=26.99 E-value=87 Score=25.55 Aligned_cols=29 Identities=7% Similarity=0.243 Sum_probs=17.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017008 346 GYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 376 (379)
Q Consensus 346 ~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~w 376 (379)
-|+..|++++.+++... +.++||.||+++
T Consensus 61 mWaL~wtC~gll~Li~~--iclFWWAkRrd~ 89 (134)
T PF15431_consen 61 MWALGWTCGGLLLLICS--ICLFWWAKRRDM 89 (134)
T ss_pred HHHHHHHHHhHHHHHHH--HHHHHHHHHhch
Confidence 35556666655433222 357899998876
No 101
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.98 E-value=3e+02 Score=21.35 Aligned_cols=27 Identities=7% Similarity=-0.139 Sum_probs=14.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017008 345 HGYMFKWVVIFTAIFCAVTFVFIMSYARFKG 375 (379)
Q Consensus 345 ~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~ 375 (379)
-++|+++.++..+++.+ ..++|.++-+
T Consensus 52 ~t~g~~~g~~~~~~~~~----l~~~Yv~~An 78 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWV----LTWLYVRRAN 78 (91)
T ss_pred cCHHHHHHHHHHHHHHH----HHHHHHHHHc
Confidence 55677555554433332 3667777654
No 102
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=26.85 E-value=1.6e+02 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=29.3
Q ss_pred HHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017008 325 IYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 376 (379)
Q Consensus 325 ~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~w 376 (379)
..-+-.|+||-|-.+..+-+..-++-++...+...+..+.-...-|.+++|+
T Consensus 204 a~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp 255 (409)
T COG0004 204 AALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLRNGKP 255 (409)
T ss_pred HHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456789999999988777433334333333333333333344455555554
No 103
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.64 E-value=2.9e+02 Score=21.09 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 017008 165 LAARTTELETAAYPALDE 182 (379)
Q Consensus 165 Le~~~~~le~~~~~~ld~ 182 (379)
++..++.++..+.++.++
T Consensus 31 ~~~ti~~l~~~~~~i~~e 48 (90)
T PF06103_consen 31 VNKTIDTLQEQVDPITKE 48 (90)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 334444444444444433
No 104
>PRK00736 hypothetical protein; Provisional
Probab=26.52 E-value=2.4e+02 Score=20.82 Aligned_cols=23 Identities=0% Similarity=0.154 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017008 196 RKLKSAMTRLTARVQKVRDELEQ 218 (379)
Q Consensus 196 ~~lk~~L~~l~~~v~~vr~~l~~ 218 (379)
.+--+.+..|++.+..+.+-+..
T Consensus 29 ~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 29 AEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544443
No 105
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=26.46 E-value=22 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhccCCCC
Q 017008 322 SLSIYSLVAGIFGMNIPY 339 (379)
Q Consensus 322 i~~~~t~IaGifGMN~~~ 339 (379)
.++..++++|+++.....
T Consensus 24 ~~gi~~~~~g~~~~~~~~ 41 (144)
T PF01957_consen 24 WGGIAAFIAGLLGLFFPD 41 (144)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345567778887777643
No 106
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=26.38 E-value=1.4e+02 Score=22.54 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=8.6
Q ss_pred cCcchHHHHHHHH
Q 017008 344 NHGYMFKWVVIFT 356 (379)
Q Consensus 344 ~~~~~f~~v~~~~ 356 (379)
++||+|...+.++
T Consensus 17 kdP~~Fl~~vll~ 29 (74)
T PF15086_consen 17 KDPYEFLTTVLLI 29 (74)
T ss_pred cChHHHHHHHHHH
Confidence 3799997655543
No 107
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.14 E-value=5e+02 Score=23.54 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 017008 162 CSFLAARTTELETAAYPALDELT 184 (379)
Q Consensus 162 ~~~Le~~~~~le~~~~~~ld~l~ 184 (379)
.-.|..++.+||..+..+..+..
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667667666655544443
No 108
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=25.89 E-value=1.4e+02 Score=19.04 Aligned_cols=17 Identities=12% Similarity=0.340 Sum_probs=9.3
Q ss_pred chHHHHHHHHHHHHHHH
Q 017008 347 YMFKWVVIFTAIFCAVT 363 (379)
Q Consensus 347 ~~f~~v~~~~~~~~~~l 363 (379)
|-|-|+++...+++..+
T Consensus 2 WYFaWiLG~lLAcAFgi 18 (37)
T COG4890 2 WYFAWILGLLLACAFGI 18 (37)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44666776555444443
No 109
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=25.82 E-value=1.5e+02 Score=26.77 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhHhcc
Q 017008 316 LSSGTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 316 LTi~t~i~~~~t~IaGifGM 335 (379)
+|...+..++..+.+|++||
T Consensus 40 ~S~l~~vyG~~l~~~~~~~~ 59 (196)
T PF06770_consen 40 CSGLVFVYGPLLLLVTTWGV 59 (196)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888
No 110
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.72 E-value=5.4e+02 Score=24.96 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=11.3
Q ss_pred echhhHHHhhCCCcch
Q 017008 44 VDKHAIMHRVQIHARD 59 (379)
Q Consensus 44 ~~k~~l~~~~~l~~RD 59 (379)
++-.+.+...|++.-|
T Consensus 14 isL~~FL~~~~I~F~d 29 (325)
T PF08317_consen 14 ISLQDFLNMTGIRFYD 29 (325)
T ss_pred cCHHHHHHHhCceeCC
Confidence 4557777888888844
No 111
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=25.50 E-value=2.2e+02 Score=25.63 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhcc
Q 017008 303 DNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 303 d~~rN~l~~i~~~LTi~t~i~~~~t~IaGifGM 335 (379)
+-.||+...+.+. .+.+.+|+++.++.|.++|
T Consensus 91 s~~rN~i~~l~~y-~~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 91 SLRRNNISLLRLY-MIGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred hcccchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3478888765443 3677777788888888774
No 112
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=25.41 E-value=3.7e+02 Score=25.99 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017008 302 LDNHRNQLIQLELFLSSGTVSLSIYSLV 329 (379)
Q Consensus 302 Ld~~rN~l~~i~~~LTi~t~i~~~~t~I 329 (379)
..+.+.++-++ ..|.+|++++...+.
T Consensus 220 ~~ai~~~lrr~--l~TslTt~l~llpL~ 245 (297)
T PRK13021 220 NQAIVATFSRT--MVTSGTTLMTVGALW 245 (297)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34455555553 456666666544443
No 113
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=25.17 E-value=1.3e+02 Score=18.06 Aligned_cols=18 Identities=6% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 017008 315 FLSSGTVSLSIYSLVAGI 332 (379)
Q Consensus 315 ~LTi~t~i~~~~t~IaGi 332 (379)
.+..+++.+.....++|+
T Consensus 7 w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGL 24 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444455554
No 114
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=25.09 E-value=4.5e+02 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhh
Q 017008 192 LDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDM 226 (379)
Q Consensus 192 L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm 226 (379)
-.|+-+.|.+|..+.+|+...+.-++++...+.-+
T Consensus 42 ~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi 76 (297)
T PF11945_consen 42 SARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI 76 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 34777888999999999999999999998776544
No 115
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.08 E-value=2.1e+02 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.683 Sum_probs=17.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhccCCC
Q 017008 308 QLIQLELFLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 308 ~l~~i~~~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
++..+...+++.|++++. +-.++||....
T Consensus 391 ~~~~il~~~gi~sii~G~--lyG~fFG~~~~ 419 (646)
T PRK05771 391 RLLKILIYLGISTIIWGL--LTGSFFGFSLP 419 (646)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhHhcCccc
Confidence 344455555666665544 34678998764
No 116
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=24.84 E-value=43 Score=25.62 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCC
Q 017008 315 FLSSGTVSLSIYSLVAGIFGMNIP 338 (379)
Q Consensus 315 ~LTi~t~i~~~~t~IaGifGMN~~ 338 (379)
.++++++++.+..-+++.||+.+.
T Consensus 13 w~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 13 LIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Confidence 567788888888889999999765
No 117
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=24.74 E-value=3.3e+02 Score=25.86 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=42.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 017008 144 EDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMT-----RLTARVQKVRDELEQ 218 (379)
Q Consensus 144 ~~~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~-----~l~~~v~~vr~~l~~ 218 (379)
+...||. +++.++...++.++.-....-+.++..+..+...+....+.+.-.|+.++. .+++...+.++.++.
T Consensus 187 p~f~p~~--afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~ 264 (295)
T PF01031_consen 187 PGFVPES--AFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIEN 264 (295)
T ss_dssp S-SCCHH--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667775 899999887777776555544445554444444433333433333444333 234444455666666
Q ss_pred hhcCC
Q 017008 219 LLDDD 223 (379)
Q Consensus 219 ll~~d 223 (379)
+++.+
T Consensus 265 li~~E 269 (295)
T PF01031_consen 265 LIDME 269 (295)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
No 118
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=24.56 E-value=4e+02 Score=21.95 Aligned_cols=13 Identities=15% Similarity=-0.100 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhCC
Q 017008 364 FVFIMSYARFKGL 376 (379)
Q Consensus 364 ~~~~~~~fkrk~w 376 (379)
...+-.+++|+||
T Consensus 97 ~~~l~~~~~k~g~ 109 (135)
T PF01769_consen 97 GYLLPIILWKIGL 109 (135)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCC
Confidence 3345556667765
No 119
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=24.30 E-value=6.1e+02 Score=23.99 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhh
Q 017008 154 LEVALEAICSFLAARTTELETAAYPALDELTSKIS------SRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDM 226 (379)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~------~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm 226 (379)
+|+-|+.-...++.+.++++...+.+--++...-. ....+.+-+|.+++.+++.....++.-+.+|-...+++
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 66666666677777777777666554333222111 11234556788888888888888888888887655544
No 120
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=23.77 E-value=3e+02 Score=27.51 Aligned_cols=8 Identities=0% Similarity=-0.305 Sum_probs=4.3
Q ss_pred CcchHHHH
Q 017008 345 HGYMFKWV 352 (379)
Q Consensus 345 ~~~~f~~v 352 (379)
.+||.|++
T Consensus 51 ~~WGl~I~ 58 (394)
T PRK10881 51 YPWGIWIA 58 (394)
T ss_pred CCchHHHH
Confidence 45665544
No 121
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.75 E-value=4.6e+02 Score=26.36 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 161 ICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 161 ~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
+...++.+++.++..+..+.+.+.... ..-.++..+.+++..+++++..+++.+..-
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~ 299 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAEY 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777777766666665544 334567777888888888887777665543
No 122
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.64 E-value=2.2e+02 Score=22.93 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=9.5
Q ss_pred CcchHHH-HHHHHHHHHHHHHHHH
Q 017008 345 HGYMFKW-VVIFTAIFCAVTFVFI 367 (379)
Q Consensus 345 ~~~~f~~-v~~~~~~~~~~l~~~~ 367 (379)
..|.|.+ |+++.++++++|++++
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHH
Confidence 3455543 2223333445444433
No 123
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.61 E-value=89 Score=27.41 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCChhhhh
Q 017008 191 NLDRVRKLKSAMTRLTARVQK---VRDELEQLLDDDDDMAD 228 (379)
Q Consensus 191 ~L~~l~~lk~~L~~l~~~v~~---vr~~l~~ll~~d~dm~~ 228 (379)
.|.+|..+|.+|..|...... +++.|+++|.|++.+..
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~ 156 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQK 156 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHH
Confidence 366788888888888877654 89999999999987653
No 124
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=23.34 E-value=2.2e+02 Score=23.47 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=7.1
Q ss_pred HHHHHHHHhC
Q 017008 366 FIMSYARFKG 375 (379)
Q Consensus 366 ~~~~~fkrk~ 375 (379)
+.|.||++++
T Consensus 82 ~~we~Cr~~r 91 (118)
T PF12597_consen 82 GSWEYCRYNR 91 (118)
T ss_pred HHHHHHHHHH
Confidence 3788888764
No 125
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=23.20 E-value=3.5e+02 Score=20.81 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 017008 157 ALEAICSFLAARTTELETAAYPALDELTSKISS-RNLDRVRKLKSAMTRLTAR----VQKVRDELEQLL 220 (379)
Q Consensus 157 iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~-~~L~~l~~lk~~L~~l~~~----v~~vr~~l~~ll 220 (379)
-|+.+...|+..+..+...+..+++++...++. ..|-++...-.+.+-++.. +..++|...-++
T Consensus 8 ~l~~v~~~~~~~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQSn~iKa~KD~~~aII 76 (80)
T PRK15326 8 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNTVKVFKDIDAAII 76 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999877654 4455555444454444432 333555444443
No 126
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=23.16 E-value=56 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.516 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 017008 355 FTAIFCAVTFVFIMSYARFKG 375 (379)
Q Consensus 355 ~~~~~~~~l~~~~~~~fkrk~ 375 (379)
+..++|++..+..++.|||||
T Consensus 38 l~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 38 LVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred HHHHHHHHHHHHHhheeeecC
Confidence 444556655556677789987
No 127
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=23.07 E-value=1.7e+02 Score=26.23 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHhccC
Q 017008 317 SSGTVSLSIYSLVAGIFGMN 336 (379)
Q Consensus 317 Ti~t~i~~~~t~IaGifGMN 336 (379)
+++++.++..++++++||.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566666667777777654
No 128
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.02 E-value=2.9e+02 Score=25.63 Aligned_cols=11 Identities=0% Similarity=0.130 Sum_probs=5.8
Q ss_pred chHHHHHHHHH
Q 017008 347 YMFKWVVIFTA 357 (379)
Q Consensus 347 ~~f~~v~~~~~ 357 (379)
|.||.++++++
T Consensus 52 ~~~~~i~gi~~ 62 (224)
T PF13829_consen 52 WWYWLIIGILL 62 (224)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 129
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=22.99 E-value=3.5e+02 Score=23.39 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHH-hHhccCCCC
Q 017008 314 LFLSSGTVSLSIYSLVA-GIFGMNIPY 339 (379)
Q Consensus 314 ~~LTi~t~i~~~~t~Ia-GifGMN~~~ 339 (379)
..++..+++....++++ -+||-|++.
T Consensus 95 ~~i~~~s~li~il~~iavil~a~~~~~ 121 (163)
T PF06653_consen 95 HIISIFSLLIVILTIIAVILFAVNISS 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHheeEEeeccc
Confidence 44455555444445544 478888873
No 130
>PF14163 SieB: Superinfection exclusion protein B
Probab=22.68 E-value=2.8e+02 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q 017008 313 ELFLSSGTVSLSIYSLVAGI 332 (379)
Q Consensus 313 ~~~LTi~t~i~~~~t~IaGi 332 (379)
++.+...+++|+|-++...+
T Consensus 4 ~l~i~~~~llf~P~~~~~~l 23 (151)
T PF14163_consen 4 WLIIFSGLLLFLPESLLEWL 23 (151)
T ss_pred HHHHHHHHHHHCCHHHHHHh
Confidence 45566667777777777653
No 131
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.34 E-value=5.4e+02 Score=26.28 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017008 158 LEAICSFLAARTTELETAAYPALDEL 183 (379)
Q Consensus 158 L~~~~~~Le~~~~~le~~~~~~ld~l 183 (379)
|...++.|-.++++|++.+..+=.+.
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRkDV 236 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRKDV 236 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666777777777665444333
No 132
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.29 E-value=5.8e+02 Score=24.58 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017008 154 LEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLL 220 (379)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll 220 (379)
-+..|+.-+..++..+..++..+..+-+.+...-+ +--+.|..++..++.+.+.+.+++..+..+-
T Consensus 123 ~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~-Els~~L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 123 DKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS-ELSRALASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344443444444444444444333333322211 2234677788888888888888887777664
No 133
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=22.25 E-value=4.1e+02 Score=25.17 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=38.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhccCCC-CCcc-------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017008 312 LELFLSSGTVSLSIYSLVAGIFGMNIP-YTWN-------ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVG 378 (379)
Q Consensus 312 i~~~LTi~t~i~~~~t~IaGifGMN~~-~~~e-------~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl~ 378 (379)
+.++|.+-+++..+-|.+-|++=|=++ .++. .+..|+||.+.....++ +-.++..+-.+||+-.++
T Consensus 114 i~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~~~s~~f~~-vY~~I~~L~~~r~r~~LP 187 (261)
T PF10160_consen 114 IKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWFISSLVFAL-VYGFILILTPLRWRDRLP 187 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHHHHHHHHHH-HHHHHHHHHhccccccCC
Confidence 446788888888888999898877776 3322 23457887665543332 322233334445444443
No 134
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.04 E-value=5.3e+02 Score=22.46 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 017008 146 ESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQK-VRDELEQLL 220 (379)
Q Consensus 146 ~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~-vr~~l~~ll 220 (379)
..|+--++||++.+- ++.++....+-.+.+...+++|+..- +..--...++|+-+..+..-+.. +|+.+-+++
T Consensus 77 pyPWt~~~L~aa~el-~ee~eeLs~deke~~~~sl~dL~~d~-PkT~vA~~rfKk~~~K~g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 77 PYPWTENALEAANEL-IEEDEELSPDEKEQFKESLPDLTKDT-PKTKVAATRFKKILSKAGSIVGDAIRDILVDVA 150 (158)
T ss_pred CCchHHHHHHHHHHH-HHHhhcCCHHHHHHHHhhhHHHhhcC-CccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 458888888887754 33444333333344555566665542 43444566778887777666544 556555544
No 135
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=21.91 E-value=1.3e+02 Score=20.41 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 017008 197 KLKSAMTRLTARVQKV 212 (379)
Q Consensus 197 ~lk~~L~~l~~~v~~v 212 (379)
++|++|..|++.+..+
T Consensus 15 qlrrelnsLR~~vhel 30 (48)
T PF10845_consen 15 QLRRELNSLRRSVHEL 30 (48)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888888877543
No 136
>PRK09110 flagellar motor protein MotA; Validated
Probab=21.84 E-value=1.2e+02 Score=29.03 Aligned_cols=41 Identities=10% Similarity=-0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHh--ccCCCCCccccCcchHHHHHHHHHHH
Q 017008 316 LSSGTVSLSIYSLVAGIF--GMNIPYTWNENHGYMFKWVVIFTAIF 359 (379)
Q Consensus 316 LTi~t~i~~~~t~IaGif--GMN~~~~~e~~~~~~f~~v~~~~~~~ 359 (379)
+|++.++++.+.+++|++ |=|+..-+ ++.++.+|+++++++
T Consensus 2 ~tliGli~~~~~i~~g~~l~gg~~~~l~---~~~~~lIV~Ggtlga 44 (283)
T PRK09110 2 LIIIGYIVVLGSVFGGYLLAGGHLGALI---QPAELLIIGGAALGA 44 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCChhHhh---chhHHHHHHHhHHHH
Confidence 577888888888888877 44544322 466777777766544
No 137
>COG5487 Small integral membrane protein [Function unknown]
Probab=21.59 E-value=2.9e+02 Score=19.30 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhHhcc
Q 017008 319 GTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 319 ~t~i~~~~t~IaGifGM 335 (379)
++++|.+.++|+|.+|.
T Consensus 4 waliFlvialIa~~lGF 20 (54)
T COG5487 4 WALIFLVIALIAGALGF 20 (54)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 57788899999999985
No 138
>PF14244 UBN2_3: gag-polypeptide of LTR copia-type
Probab=21.49 E-value=3.2e+02 Score=23.10 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017008 156 VALEAICSFLAARTTELETAAYPALDELTSKISSRN-LDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (379)
Q Consensus 156 ~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~-L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~ 221 (379)
.++..+.+.+-..+...+ .+..+-+.|...+.... -.++++++++|..+++.-..+.+-+.++-.
T Consensus 65 wl~~sis~~i~~~i~~~~-tak~~W~~L~~~f~~~~~~~r~~~L~~~l~~~kq~~~sv~ey~~~lk~ 130 (152)
T PF14244_consen 65 WLLNSISPDILSTIIFCE-TAKEIWDALKERFSQKSNASRVFQLRNELHSLKQGDKSVTEYFNKLKS 130 (152)
T ss_pred HHHHhhcHHHHhhhHhhh-hHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 333333333333343334 35667777777766666 789999999999998766666666665543
No 139
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=21.35 E-value=3.5e+02 Score=27.89 Aligned_cols=60 Identities=13% Similarity=-0.051 Sum_probs=29.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCC
Q 017008 309 LIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFV-FIMSYARFKGLVG 378 (379)
Q Consensus 309 l~~i~~~LTi~t~i~~~~t~IaGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~-~~~~~fkrk~wl~ 378 (379)
..++-..++++++.....++..|.|+- .+.++|.+..++++.+.-++ ..+-|.++++|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~g~~~~~p~~~l~~~~~~~~~~~~ 166 (495)
T PRK11644 106 WRTLLLQGAALTAAALLQSLPWLWHGK----------EGWNALLLTLTGGLTLAPTCLLFWHYLAQNTWLP 166 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHhchHHHHHHHHHHHHHHhhccccc
Confidence 333334455555555555566666642 12244444444444333333 2344777888865
No 140
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=21.12 E-value=2.1e+02 Score=27.37 Aligned_cols=51 Identities=18% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhHhccCCCC-CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017008 318 SGTVSLSIYSLVAGIFGMNIPY-TWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 376 (379)
Q Consensus 318 i~t~i~~~~t~IaGifGMN~~~-~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~w 376 (379)
+.|++++.+.+..--+++|+.. +... .| +++++++ +.+.++.+.|.||++.
T Consensus 60 ~ls~glSi~~~~~~g~~l~~~~~~i~~-~~----i~~~l~~---~t~~~~~~a~~rr~~~ 111 (287)
T PF07760_consen 60 ALSVGLSIAIVPLIGLLLNYTPWGIRL-IP----ILISLSI---FTLVLSIIAYIRRRRL 111 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcch-hH----HHHHHHH---HHHHHHHHHHHhcccC
Confidence 4455555555555567778754 3322 22 2222221 2222346788888774
No 141
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.03 E-value=3.1e+02 Score=19.32 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017008 159 EAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVR 213 (379)
Q Consensus 159 ~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr 213 (379)
++-...|+.+...||..++.+. ..++.+.+ .++.+||+=..|+..+.+++
T Consensus 4 eshl~eL~kkHg~le~ei~ea~----n~Ps~dd~-~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAM----NSPSSDDL-AIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHh----cCCCcchH-HHHHHHHHHHHHHHHHHHHh
Confidence 3445667777778887765432 33333332 45566666555555554443
No 142
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=21.01 E-value=2.8e+02 Score=26.26 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHHHHHHhHhccCCCC
Q 017008 323 LSIYSLVAGIFGMNIPY 339 (379)
Q Consensus 323 ~~~~t~IaGifGMN~~~ 339 (379)
++.+++++.+|+|--..
T Consensus 50 i~~~~Ll~~v~t~~~~~ 66 (284)
T PF12805_consen 50 IGFATLLVAVYTMAGPS 66 (284)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44566777788886654
No 143
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=20.95 E-value=3.3e+02 Score=30.62 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=7.3
Q ss_pred HHHHHHHHhCC
Q 017008 366 FIMSYARFKGL 376 (379)
Q Consensus 366 ~~~~~fkrk~w 376 (379)
.=.+|+||.||
T Consensus 891 ~K~~~~~~~~~ 901 (902)
T PRK10517 891 VKGFYSRRYGW 901 (902)
T ss_pred HHHHHHHhhcC
Confidence 34567787775
No 144
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=20.95 E-value=1.8e+02 Score=31.65 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhc-----cCCCCCcc
Q 017008 298 INIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFG-----MNIPYTWN 342 (379)
Q Consensus 298 i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGifG-----MN~~~~~e 342 (379)
.|-.....-.-+.--+.+|++++++++-=++|+|.|- |++...|-
T Consensus 300 ~NpFf~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr 349 (688)
T TIGR00794 300 KNPFFLSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPR 349 (688)
T ss_pred cCcHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3433344445666778999999999999999999996 46655443
No 145
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=20.85 E-value=5e+02 Score=25.78 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=6.4
Q ss_pred EEEEEcCCCCee
Q 017008 29 SWILLDAAGNST 40 (379)
Q Consensus 29 ~w~~id~~g~~~ 40 (379)
.|.-+|.+|+..
T Consensus 2 ~y~a~~~~G~~~ 13 (399)
T TIGR02120 2 RYRALDAAGRAQ 13 (399)
T ss_pred eEEEEcCCCCEE
Confidence 355555555554
No 146
>PF13994 PgaD: PgaD-like protein
Probab=20.66 E-value=5.1e+02 Score=21.72 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=11.8
Q ss_pred HHHHHHhHhccCCCC
Q 017008 325 IYSLVAGIFGMNIPY 339 (379)
Q Consensus 325 ~~t~IaGifGMN~~~ 339 (379)
..|++.+++|.+...
T Consensus 35 l~~ll~~ll~~~~~~ 49 (138)
T PF13994_consen 35 LLTLLAWLLGLHLFY 49 (138)
T ss_pred HHHHHHHHHcccccc
Confidence 456889999999864
No 147
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=20.60 E-value=2e+02 Score=20.21 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=12.9
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHH
Q 017008 339 YTWNENHGYMFKWVVIFTAIFCAVTF 364 (379)
Q Consensus 339 ~~~e~~~~~~f~~v~~~~~~~~~~l~ 364 (379)
..|..+..|||-.. -++..+.+++.
T Consensus 23 tlpashaqygfrll-rgif~itlviw 47 (60)
T PF08196_consen 23 TLPASHAQYGFRLL-RGIFLITLVIW 47 (60)
T ss_pred ccchHHHHHHHHHH-HHHHHHHHHHH
Confidence 34455567888543 33444444433
No 148
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=20.51 E-value=4.1e+02 Score=24.49 Aligned_cols=74 Identities=22% Similarity=0.424 Sum_probs=39.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017008 143 EEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDD 222 (379)
Q Consensus 143 ~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~ 222 (379)
.++-|||...++|.+++.+ +..++ .+|..+.. .++...+..-.|+|+.-+-+.- |+-+++++..-...+++.
T Consensus 41 APeLLp~~~elve~~ldqI-e~~eE---~i~~~a~~--~dlr~~~~qmELERvkfvlrSY--lRcRL~KIekf~~~~ln~ 112 (223)
T KOG3176|consen 41 APELLPYALELVERLLDQI-EHMEE---TIERKASN--KDLRVSLHQMELERVKFVLRSY--LRCRLQKIEKFLQHILNQ 112 (223)
T ss_pred ChhhcCChHHHHHHHHHHH-HHHHH---HHHHhccc--ccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhcc
Confidence 3678999998888888763 33332 22221110 0133334445677776443322 445555555555566665
Q ss_pred Ch
Q 017008 223 DD 224 (379)
Q Consensus 223 d~ 224 (379)
++
T Consensus 113 ee 114 (223)
T KOG3176|consen 113 EE 114 (223)
T ss_pred hh
Confidence 54
No 149
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.32 E-value=4.4e+02 Score=24.54 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=33.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017008 166 AARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLL 220 (379)
Q Consensus 166 e~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll 220 (379)
+.+++.++.....+++-+.+ ..+.+.+..+.++|.+++..+..++..+..+-
T Consensus 138 ~arl~~l~~~~~rl~~ll~k---a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 138 EARLKNLEAEEERLLELLEK---AKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444443432 23577888888888888888888877777664
No 150
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=20.21 E-value=2.8e+02 Score=31.24 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=5.3
Q ss_pred HHHHH-hCCC
Q 017008 369 SYARF-KGLV 377 (379)
Q Consensus 369 ~~fkr-k~wl 377 (379)
+|+|+ |+||
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 45554 6775
Done!