Query 017008
Match_columns 379
No_of_seqs 224 out of 1587
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 1.7E-49 5.8E-54 369.1 25.4 225 26-309 15-261 (261)
2 2iub_A CORA, divalent cation t 100.0 2.7E-36 9.2E-41 296.9 26.5 279 26-377 69-363 (363)
3 4ev6_A Magnesium transport pro 100.0 2.9E-35 1E-39 286.9 31.7 279 26-377 48-339 (339)
4 4egw_A Magnesium transport pro 99.6 6.9E-15 2.4E-19 139.2 19.1 221 25-314 47-280 (280)
5 3nvo_A Zinc transport protein 99.5 5.2E-12 1.8E-16 118.1 20.5 166 25-224 39-218 (264)
6 3ck6_A Putative membrane trans 99.3 3.8E-11 1.3E-15 111.4 17.4 205 29-313 32-252 (252)
7 2bbh_A Divalent cation transpo 99.1 6.5E-10 2.2E-14 104.1 13.2 169 26-224 60-243 (269)
8 2hn1_A CORA, magnesium and cob 99.1 9.2E-10 3.1E-14 102.9 12.3 168 25-224 64-243 (266)
9 2iub_A CORA, divalent cation t 94.1 0.24 8.3E-06 47.7 10.1 121 173-335 197-322 (363)
10 4ev6_A Magnesium transport pro 92.8 1.2 4.1E-05 42.3 12.7 49 287-335 249-298 (339)
11 3v86_A De novo design helix; c 79.4 4.2 0.00014 22.7 4.2 25 195-219 2-26 (27)
12 2k1a_A Integrin alpha-IIB; sin 67.2 12 0.00039 24.2 4.8 29 350-378 10-38 (42)
13 2ks1_B Epidermal growth factor 66.0 8.5 0.00029 25.1 4.0 11 365-375 29-39 (44)
14 1txp_A HnRNP C, heterogeneous 64.7 8.6 0.0003 22.3 3.4 25 196-220 2-26 (28)
15 2k21_A Potassium voltage-gated 63.4 5.3 0.00018 32.2 3.2 32 345-376 49-80 (138)
16 2knc_A Integrin alpha-IIB; tra 62.8 8.9 0.00031 26.2 3.8 7 369-375 37-43 (54)
17 3swf_A CGMP-gated cation chann 62.5 42 0.0014 24.4 8.0 48 160-215 7-54 (74)
18 2l8s_A Integrin alpha-1; trans 62.1 6.5 0.00022 26.9 3.0 7 369-375 34-40 (54)
19 2jwa_A Receptor tyrosine-prote 62.1 15 0.00051 24.0 4.6 20 357-376 21-40 (44)
20 2l2t_A Receptor tyrosine-prote 57.6 22 0.00076 23.1 4.9 11 365-375 28-38 (44)
21 2k1k_A Ephrin type-A receptor 53.3 14 0.00047 23.3 3.3 11 364-374 27-37 (38)
22 1deq_A Fibrinogen (alpha chain 41.3 1.7E+02 0.0057 28.0 10.0 82 155-286 108-189 (390)
23 3lt7_A Adhesin YADA; adhesion, 40.9 49 0.0017 23.3 4.8 42 289-333 23-64 (64)
24 2k9y_A Ephrin type-A receptor 39.2 25 0.00085 22.0 2.9 6 368-373 33-38 (41)
25 1nfn_A Apolipoprotein E3; lipi 38.4 73 0.0025 27.3 6.8 69 154-223 60-129 (191)
26 3swy_A Cyclic nucleotide-gated 36.9 87 0.003 20.5 6.4 40 161-208 6-45 (46)
27 3p8c_D Wiskott-aldrich syndrom 36.4 1.6E+02 0.0055 26.9 8.9 57 154-218 26-82 (279)
28 3nvo_A Zinc transport protein 34.4 1.5E+02 0.0052 26.1 8.6 25 287-311 239-263 (264)
29 3ghg_A Fibrinogen alpha chain; 31.8 1.5E+02 0.005 29.6 8.3 14 273-286 173-186 (562)
30 2w6b_A RHO guanine nucleotide 30.7 90 0.0031 21.1 4.6 29 193-221 10-38 (56)
31 3iyk_A VP5; icosahedral virus; 27.2 4.1E+02 0.014 26.3 10.5 77 150-227 147-228 (526)
32 1vcs_A Vesicle transport throu 26.2 2E+02 0.0068 21.8 6.7 22 192-213 73-94 (102)
33 2bbh_A Divalent cation transpo 25.1 2.6E+02 0.0088 24.6 8.4 62 153-221 172-233 (269)
34 2g0u_A Type III secretion syst 25.1 1.6E+02 0.0053 22.3 5.6 51 157-207 17-68 (92)
35 2ca5_A MXIH; transport protein 24.8 2.1E+02 0.0073 21.1 6.6 65 158-222 12-81 (85)
36 1iij_A ERBB-2 receptor protein 23.9 31 0.0011 21.3 1.2 15 361-375 21-35 (35)
37 3efg_A Protein SLYX homolog; x 23.7 96 0.0033 22.6 4.2 13 164-176 11-23 (78)
38 4dnd_A Syntaxin-10, SYN10; str 23.2 2.9E+02 0.0098 22.0 9.2 64 150-216 64-128 (130)
39 1t3j_A Mitofusin 1; coiled coi 22.9 2.5E+02 0.0086 21.3 9.1 32 146-177 33-64 (96)
40 3okq_A BUD site selection prot 22.1 3.2E+02 0.011 22.2 9.1 59 158-217 19-78 (141)
41 1m1j_A Fibrinogen alpha subuni 22.0 2.8E+02 0.0095 27.2 8.1 29 192-220 131-159 (491)
42 2klu_A T-cell surface glycopro 21.7 1.5E+02 0.0053 20.9 4.6 17 356-372 15-31 (70)
43 3s8f_C Cytochrome C oxidase po 21.7 1.5E+02 0.005 18.1 4.5 13 342-355 2-14 (34)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-49 Score=369.13 Aligned_cols=225 Identities=28% Similarity=0.432 Sum_probs=206.5
Q ss_pred ceeEEEEEcCCCCeeEEe--echhhHHHhhCCCcchhhhhcCCC-CCceeEeeeCCeEEEeccccceeeecCcEEeeCCC
Q 017008 26 SSRSWILLDAAGNSTVLD--VDKHAIMHRVQIHARDLRILDPLL-SYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPL 102 (379)
Q Consensus 26 ~~~~w~~id~~g~~~~~~--~~k~~l~~~~~l~~RDlr~ld~~~-~~~~~I~~R~~~Ilvnle~i~~II~~d~vl~f~~~ 102 (379)
...+|++||..|++..++ ++|++|++++||+|||||+|||.+ +++|+|++|++||+||++||||||++|+|++|++.
T Consensus 15 ~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~ 94 (261)
T 3rkg_A 15 LFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTT 94 (261)
T ss_dssp GEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCS
T ss_pred ceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCC
Confidence 378999999999999986 899999999999999999999985 68889999999999999999999999999999998
Q ss_pred CCcch----hHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017008 103 DEHVI----PVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178 (379)
Q Consensus 103 ~~~~~----~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~~ 178 (379)
++.+. .|+++++.|++.++ .+.+||||+|||+||.++|+.|++++..++..+++
T Consensus 95 ~~~~~~~~~~f~~~l~~~l~~~~----------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~ 152 (261)
T 3rkg_A 95 NPSAAAKLSVLMYDLESKLSSTK----------------------NNSQFYEHRALESIFINVMSALETDFKLHSQICIQ 152 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSS----------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccCC----------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554 58899999997642 34799999999999999999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCCCCcccc
Q 017008 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS 258 (379)
Q Consensus 179 ~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~~~~~~~ 258 (379)
+|++|++++++..|++|+..+++|+++.++++.+|++|+++|++|+||+.||||++..
T Consensus 153 ~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~---------------------- 210 (261)
T 3rkg_A 153 ILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS---------------------- 210 (261)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------------------
Confidence 9999999999999999999999999999999999999999999999999999998742
Q ss_pred chhhccccccccccCChhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 017008 259 KISRASRASLATIRGDENDVEELEMLLE---------------LREYIDDTEDYINIQLDNHRNQL 309 (379)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~eele~LLE---------------l~e~i~~te~~i~i~Ld~~rN~l 309 (379)
..++|+|+||||| ++++|++||++|++.||++||++
T Consensus 211 ---------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 211 ---------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp ---------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 2568999999999 88999999999999999999985
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=100.00 E-value=2.7e-36 Score=296.87 Aligned_cols=279 Identities=16% Similarity=0.235 Sum_probs=194.1
Q ss_pred ceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeE--EEe------------cccccee
Q 017008 26 SSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAI--VLN------------LEHIKAI 90 (379)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~I--lvn------------le~i~~I 90 (379)
+...|+.+++..+.... ..|.+++|||+-.+.+ +++ .++|++...++++ +++ .+++.++
T Consensus 69 ~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~ied~l~~--~~rpk~e~~~~~lfivl~~~~~~~~~~~~~~~~v~~~ 142 (363)
T 2iub_A 69 STPTWINITGIHRTDVV----QRVGEFFGIHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLI 142 (363)
T ss_dssp SSCEEEEEECTTCHHHH----HHHHHHTTCCHHHHHHHHCC--SSCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCeEEEEeCCCCCHHHH----HHHHHHcCcChhHHHHHhCC--CCCCeEEEECCEEEEEEEeeeecccccccceEEEEEE
Confidence 35778888776655545 7788999999999998 555 6889999999874 333 2468999
Q ss_pred eecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017008 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (379)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~ 170 (379)
++.|+|++|...+. +.++.+++|++...+..+ ..+.+++ .+.+++.+++.+...++
T Consensus 143 l~~~~liTv~~~~~---~~~~~v~~rl~~~~~~~~---------------~~~~~~l--l~~lld~ivd~y~~~l~---- 198 (363)
T 2iub_A 143 LTKNCVLMFQEKIG---DVFDPVRERIRYNRGIIR---------------KKRADYL--LYSLIDALVDDYFVLLE---- 198 (363)
T ss_dssp EETTEEEEEESSSC---CSCHHHHHHHHTTCTTTT---------------TSCHHHH--HHHHHHHHHHHHHHHHH----
T ss_pred EECCEEEEEEeCCC---chHHHHHHHHHhcCCccc---------------cCCHHHH--HHHHHHHHHHHHHHHHH----
Confidence 99999999988653 357888888876533221 0112222 22346666666655544
Q ss_pred HHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCC
Q 017008 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWF 250 (379)
Q Consensus 171 ~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~ 250 (379)
.+++.+..+.+.+.++.....+++++.+|+++..+++.++|.+++++.+.+.+.... ++...
T Consensus 199 ~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~~~~~-------------- 260 (363)
T 2iub_A 199 KIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLI----EKETV-------------- 260 (363)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSC----HHHHH--------------
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----CHHHH--------------
Confidence 445555555556666555677999999999999999999999999999997654321 11100
Q ss_pred CCCCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017008 251 PASPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLV 329 (379)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~I 329 (379)
.++ .+..++++.+.| ++.+.+.+..+.+.+++.++|++|++|++||++|++|+|+|||
T Consensus 261 -------------------~~l--rDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~I 319 (363)
T 2iub_A 261 -------------------PYF--RDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFI 319 (363)
T ss_dssp -------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 223344555555 6677788888888999999999999999999999999999999
Q ss_pred HhHhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 330 AGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 330 aGifGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
||+|||||++|||.+|+||||+++++|+++|++ +++||||||||
T Consensus 320 aGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~----~~~~Fkrk~Wl 363 (363)
T 2iub_A 320 AGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVI----MVVYFKKKKWL 363 (363)
T ss_dssp TTSCC--------------CHHHHHHHHHHHHH----HHTTTTSCC--
T ss_pred HhhhcccCCCCCcccCcHHHHHHHHHHHHHHHH----HHHHHHHcccC
Confidence 999999999999999999999999998777765 99999999997
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.9e-35 Score=286.95 Aligned_cols=279 Identities=15% Similarity=0.166 Sum_probs=207.4
Q ss_pred ceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeEEE--ec---------cccceeeec
Q 017008 26 SSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAIVL--NL---------EHIKAIITS 93 (379)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~Ilv--nl---------e~i~~II~~ 93 (379)
...-|+.+.+.-+.+ ...|.+++|+|+-.+++ +++ .++|++...++..++ +. +++.++++.
T Consensus 48 ~~~vWIdl~~Pt~~E-----~~~l~~~~~l~~~~~ed~l~~--~~rpk~e~~~~~~~iv~~~~~~~~~~~~~~v~i~l~~ 120 (339)
T 4ev6_A 48 YRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIKN 120 (339)
T ss_dssp CSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHHCT--TCCCEEEEETTEEEEECCCCCCTTTCCCCCCEEEEET
T ss_pred CCEEEEEeCCCCHHH-----HHHHHHHHCcCHhHHHHhhCC--ccCCeEEEECCEEEEEEecCccCCCcceEEEEEEEEC
Confidence 446798886543322 36788999999999998 566 688999999987443 32 678899999
Q ss_pred CcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 94 EEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELE 173 (379)
Q Consensus 94 d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le 173 (379)
++++++...+. +.++.+++++......... ..+.++ +.+.+++.+++.+...+ +.++
T Consensus 121 ~~lITv~~~~~---~~~~~~~~~~~~~~~~~~~--------------~~~~~~--ll~~lld~ivd~~~~~l----~~l~ 177 (339)
T 4ev6_A 121 NLLLTIHSDKI---KAIGRLHKLISTKKPRIVF--------------ERGIGF--LLYHILNEITRSYSRIL----MNLE 177 (339)
T ss_dssp TEEEEEESSCC---HHHHHHHHHSSSSSSCCCC--------------CSCHHH--HHHHHHHHHHHHHHHHH----HHHH
T ss_pred CeeEEeecCCc---chhHHHHHHHHcCCCcccc--------------ccCHHH--HHHHHHHHHHHHHHHHH----HHHH
Confidence 99999987654 5788999998776543210 011222 22234666665555444 4455
Q ss_pred HhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCCC
Q 017008 174 TAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPAS 253 (379)
Q Consensus 174 ~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~~ 253 (379)
+.+..+.+.+.++.+.+.++++..+|+++..+++.+.+.++++..+.+.+.... ++...
T Consensus 178 ~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~----~~~~~----------------- 236 (339)
T 4ev6_A 178 DELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----TKEDR----------------- 236 (339)
T ss_dssp HHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTB----CHHHH-----------------
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccccc----chHHH-----------------
Confidence 555555556666667788999999999999999999999999999987654321 11000
Q ss_pred CccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 017008 254 PTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGI 332 (379)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGi 332 (379)
.++ .+..+++..+.| +..+.+.+..+.+.+++..+|++|++|++||++|++|+|+|+|||+
T Consensus 237 ----------------~~l--~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 237 ----------------ENF--EDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp ----------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred ----------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011 223334445555 5566777778888889999999999999999999999999999999
Q ss_pred hccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017008 333 FGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV 377 (379)
Q Consensus 333 fGMN~~~~~e~~~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~wl 377 (379)
|||||++|||.+|+||||+++++|+++|++ +++||||||||
T Consensus 299 yGMNf~~mPel~~~~gy~~~l~~m~~~~~~----~~~~fkrk~WL 339 (339)
T 4ev6_A 299 YGMNFSYLPLANNPQGFWLVMALMVVIIMI----FVYIFRRSGWI 339 (339)
T ss_dssp TTCCCSCCTTSSCTTHHHHHHHHHHHHHHH----HHHHHHTTTCC
T ss_pred ccCcCCCCCCccCchHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence 999999999999999999999988777665 89999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=6.9e-15 Score=139.18 Aligned_cols=221 Identities=14% Similarity=0.119 Sum_probs=151.4
Q ss_pred CceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCe--EEEec---------cccceeee
Q 017008 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQA--IVLNL---------EHIKAIIT 92 (379)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~--Ilvnl---------e~i~~II~ 92 (379)
....-|+.+.+....+ ...|.++|||||..+++ +++ .++|++...++. |+++. +++.++++
T Consensus 47 d~~~vWIdl~~Pt~eE-----l~~l~~~f~lh~l~leD~l~~--~~rpKie~~~d~~fivl~~~~~~~~~~t~~v~i~l~ 119 (280)
T 4egw_A 47 DYRLIWIDCYDPKDEE-----LYKLSKKIGISVSDLQIGLDE--QEIPRVEEDEDFYLIIYKAPLFEEDITTTSLGIYIK 119 (280)
T ss_dssp SSSCEEEEEESCCHHH-----HHHHHHHHTCCHHHHHHHTCT--TCCCEEECCSSSEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred CCeEEEEEeCCCCHHH-----HHHHHHHHCcCHHHHHHHhCc--ccCceEEEECCEEEEEEEeccccccceeeeEEEEEE
Confidence 3457799887654322 36788999999999998 565 688999999986 44433 67899999
Q ss_pred cCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 93 SEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTEL 172 (379)
Q Consensus 93 ~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~l 172 (379)
.++|++|...+. +.++.+++|+....+.... ..+++++-| .+|+.+++.+...++. +
T Consensus 120 ~~~lITv~~~~~---~~~~~v~~~l~~~~~~~~~--------------~~g~~~ll~--~lld~ivd~y~~~l~~----i 176 (280)
T 4egw_A 120 NNLLLTIHSDKI---KAIGRLHKLISTKKPRIVF--------------ERGIGFLLY--HILNEITRSYSRILMN----L 176 (280)
T ss_dssp TTEEEEEESSCC---HHHHHHHHHHHHSCCSSSC--------------TTTTTHHHH--HHHHHHHHHHHHHHHH----H
T ss_pred CCEEEEEecCCc---chHHHHHHHHHhcCccccc--------------ccCHHHHHH--HHHHHHHHHHHHHHHH----H
Confidence 999999988764 5789999999776543210 123444333 4688888887776654 4
Q ss_pred HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCC
Q 017008 173 ETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPA 252 (379)
Q Consensus 173 e~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~ 252 (379)
+..+..+.+.+.++..+..+++++.+|++|..+++.++|.++++..+.+.+.... ++...
T Consensus 177 ~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~----~~~~~---------------- 236 (280)
T 4egw_A 177 EDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPIT----TKEDR---------------- 236 (280)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC----CHHHH----------------
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccC----CHHHH----------------
Confidence 4444445566667777788999999999999999999999999999987654321 11100
Q ss_pred CCccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017008 253 SPTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLEL 314 (379)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~~ 314 (379)
.|+ .+.++++..+.| +..+.+.+..+.+.+++.++|++|++||
T Consensus 237 -----------------~~l--~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 237 -----------------ENF--EDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK 280 (280)
T ss_dssp -----------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred -----------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 022 223334455555 5677788888999999999999999987
No 5
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.46 E-value=5.2e-12 Score=118.07 Aligned_cols=166 Identities=8% Similarity=0.071 Sum_probs=119.3
Q ss_pred CceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhhhcCCCCCceeEeeeCCeEEEe--------------cccccee
Q 017008 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLN--------------LEHIKAI 90 (379)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~ld~~~~~~~~I~~R~~~Ilvn--------------le~i~~I 90 (379)
.+...|+.++..- .... ..|.+.+|||+..+..+-. .+++|++...++.+++. +++++++
T Consensus 39 ~~~~~Wi~l~~p~-~~e~----~~l~~~~~l~~l~~ed~~~-~~~rpk~e~~~~~~fivl~~~~~~~~~~~~~~~~v~~~ 112 (264)
T 3nvo_A 39 SQHPCWLHLNYTH-PDSA----RWLASTPLLPNNVRDALAG-ESSRPRVSRMGEGTLITLRCINGSTDERPDQLVAMRLY 112 (264)
T ss_dssp TTSCEEEEEETTS-HHHH----HHHHHCTTSCTTTHHHHTT-CCCSCEEEEETTEEEEEEECC----------CCEEEEE
T ss_pred CCCCEEEEeCCCC-HHHH----HHHHhccCCCHHHHHHHhC-CCCCCceEEECCEEEEEEEecccCCCCCCcceEEEEEE
Confidence 4557899998743 3333 7788999999999998443 27889999999974442 3678999
Q ss_pred eecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017008 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (379)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~ 170 (379)
++.++|++|...+. ++++.+++|+..+.+. .++++ +.+.+++.+++.+...++.
T Consensus 113 l~~~~lITv~~~~~---~~~~~v~~rl~~~~~~------------------~~~~~--ll~~lld~ivd~y~~~l~~--- 166 (264)
T 3nvo_A 113 MDERFIVSTRQRKV---LALDDVVSDLQEGTGP------------------VDCGG--WLVDVCDALTDHASEFIEE--- 166 (264)
T ss_dssp ECSSEEEEEESSCC---HHHHHHHHHHHTTCSC------------------SSHHH--HHHHHHHHHHHHHHHHHHH---
T ss_pred EeCCEEEEEecCCc---CcHHHHHHHHHhCCCC------------------CCHHH--HHHHHHHHHHHHHHHHHHH---
Confidence 99999999998753 6789999999765321 12233 3444577777776665553
Q ss_pred HHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 017008 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (379)
Q Consensus 171 ~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~ 224 (379)
+++.+..+.+.+.++ ....+.+|+.+|+++..|++.++|.++++.++.+.+.
T Consensus 167 -l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 218 (264)
T 3nvo_A 167 -LHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERL 218 (264)
T ss_dssp -HHHHHHHHTTC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred -HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence 344443333444444 5667899999999999999999999999999998764
No 6
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.33 E-value=3.8e-11 Score=111.45 Aligned_cols=205 Identities=8% Similarity=0.088 Sum_probs=137.7
Q ss_pred EEEEEcCCCCeeEEeechhhHHHhhCCCcchhhhhcCCCCCceeEeeeCC-eE--EEec------------cccceeeec
Q 017008 29 SWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQ-AI--VLNL------------EHIKAIITS 93 (379)
Q Consensus 29 ~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~ld~~~~~~~~I~~R~~-~I--lvnl------------e~i~~II~~ 93 (379)
.|+.+++.. .... ..|.+. |+|+-.+..+-. ..++|++...++ ++ +++. ..++++++.
T Consensus 32 ~Wi~l~~p~-~~e~----~~l~~~-~l~~l~~ed~l~-~~~rpk~e~~~d~~lfivl~~~~~~~~~~~~~~~~l~i~l~~ 104 (252)
T 3ck6_A 32 HWYHCERLH-PDIR----GWLEDN-HVPRATVDHLLA-DESRPSFHPLDDDNFMLILRGINMNENASPEDMLSIRILYFQ 104 (252)
T ss_dssp EEEEEETTC-TTHH----HHHHHT-TCCHHHHHHHHC-SSCCCEEEECSTTCEEEEEEECCCSTTCCTTSCEEEEEEEET
T ss_pred EEEEecCCC-HHHH----HHHHHc-CCCHHHHHHHhC-CCCCCceEEeCCceEEEEEecCccCCCCCcccEEEEEEEEeC
Confidence 899998854 3334 778888 999999998443 278899999999 75 4443 225679999
Q ss_pred CcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 94 EEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELE 173 (379)
Q Consensus 94 d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~le 173 (379)
++|+++...+. +.++.+++|+..+.+. .+..+ |.+.+++.+++.+...++. ++
T Consensus 105 ~~lITvr~~~~---~~~~~v~~~l~~~~~~------------------~~~~~--ll~~lld~ivd~y~~~l~~----l~ 157 (252)
T 3ck6_A 105 GALISTRKIPS---RAIMEIRQALAEHKGP------------------KSLAS--LLNQIIEGLNGKIDLYLDT----IE 157 (252)
T ss_dssp TEEEEEESSCC---HHHHHHHHHHHTTCSC------------------SSHHH--HHHHHHHHHHHHHHHHHHH----HH
T ss_pred CEEEEEeCCCc---chHHHHHHHHHhCCCC------------------CCHHH--HHHHHHHHHHHHHHHHHHH----HH
Confidence 99999988754 5788999998654321 11222 4445677777776666554 33
Q ss_pred HhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCCC
Q 017008 174 TAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPAS 253 (379)
Q Consensus 174 ~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~~ 253 (379)
+.+. ++++. ...+++|+.+|+++..+++.++|.|+++.++.+.+.. . .+...
T Consensus 158 ~~id----~lE~~--~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~-~----~~~~~----------------- 209 (252)
T 3ck6_A 158 ETLN----EFDVN--DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESESE-L----VTSRP----------------- 209 (252)
T ss_dssp HHHH----TCCTT--CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-H----HHTSH-----------------
T ss_pred HHHH----HHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-C----CHHHH-----------------
Confidence 3332 22232 2357889999999999999999999999999987643 2 11100
Q ss_pred CccccchhhccccccccccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 254 PTIGSKISRASRASLATIRGDENDVEELEMLLE-LREYIDDTEDYINIQLDNHRNQLIQLE 313 (379)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE-l~e~i~~te~~i~i~Ld~~rN~l~~i~ 313 (379)
.|+ .+.++++..+.| +..+.+.+..+.+.+++..+|++|++|
T Consensus 210 ----------------~~~--rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 210 ----------------HQY--RFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp ----------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ----------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 021 223344555555 667777888888888999999999876
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.10 E-value=6.5e-10 Score=104.06 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=117.9
Q ss_pred ceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeE--EEec------------ccccee
Q 017008 26 SSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAI--VLNL------------EHIKAI 90 (379)
Q Consensus 26 ~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~I--lvnl------------e~i~~I 90 (379)
+...|+.+++..+...+ ..|.+.+|||+-.+.+ ++. .++|++...++++ +++. +++.++
T Consensus 60 ~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~~~~v~~~ 133 (269)
T 2bbh_A 60 STPTWINITGIHRTDVV----QRVGEFFGTHPLVLEDILNV--HQRPKVEFFENYVFIVLKMFTYDKNLHELESEQVSLI 133 (269)
T ss_dssp SSCEEEEEECTTCHHHH----HHHHHHHTCCHHHHHHHHCT--TCCCEEEECSSEEEEEEEEEECCC--CCCEEEEEEEE
T ss_pred CCeEEEEecCCCCHHHH----HHHHHHcCCCHhHHHHHhCc--CCCceEEEECCEEEEEEEeeeecCCcCceeEEEEEEE
Confidence 35779998887666555 7888999999999998 454 6889999999975 4432 467899
Q ss_pred eecCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 017008 91 ITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTT 170 (379)
Q Consensus 91 I~~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~ 170 (379)
++.++|++|...+. +.++.+++|+....+... ..+.++ +.+.+|+.+++.+...++.-
T Consensus 134 l~~~~lITv~~~~~---~~~~~v~~rl~~~~~~~~---------------~~~~~~--ll~~lld~ivd~y~~~l~~i-- 191 (269)
T 2bbh_A 134 LTKNCVLMFQEKIG---DVFDPVRERIRYNRGIIR---------------KKRADY--LLYSLIDALVDDYFVLLEKI-- 191 (269)
T ss_dssp EETTEEEEEESSSC---CSCHHHHHHHHTTCTTGG---------------GSCHHH--HHHHHHHHHHHHHHHHHHHH--
T ss_pred EECCEEEEEECCCC---CcHHHHHHHHHhcCCchh---------------hCCHHH--HHHHHHHHHHHHHHHHHHHH--
Confidence 99999999987653 356788889876533211 011222 22356888888776666543
Q ss_pred HHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 017008 171 ELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (379)
Q Consensus 171 ~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~ 224 (379)
+..+..+.+.+.++.....+++|+.+|+++..|++.++|.++++..+.+.+.
T Consensus 192 --~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (269)
T 2bbh_A 192 --DDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVP 243 (269)
T ss_dssp --HHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333334444444567899999999999999999999999999997643
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.06 E-value=9.2e-10 Score=102.95 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=122.7
Q ss_pred CceeEEEEEcCCCCeeEEeechhhHHHhhCCCcchhhh-hcCCCCCceeEeeeCCeE--EEe---------ccccceeee
Q 017008 25 RSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRI-LDPLLSYPSTILGREQAI--VLN---------LEHIKAIIT 92 (379)
Q Consensus 25 ~~~~~w~~id~~g~~~~~~~~k~~l~~~~~l~~RDlr~-ld~~~~~~~~I~~R~~~I--lvn---------le~i~~II~ 92 (379)
.+...|+.+++..+.... ..|.+.+|||+-.+.. ++. .++|++...++++ +++ .+++.++++
T Consensus 64 ~~~~~Wi~l~~p~~~~e~----~~l~~~f~l~~l~~ed~l~~--~~rpk~e~~~d~lfivl~~~~~~~~~~~~~v~~~l~ 137 (266)
T 2hn1_A 64 LNKKLWIDVVGVHDESLI----AKICEFLGIHPLAAEDILNT--AQRVKIEDYDDHLFLVLKILLYNETLEIDQLSLVLK 137 (266)
T ss_dssp TTSEEEEEECCCCCHHHH----HHHHHTTTCCHHHHHHHHBT--TCCSEEEECSSEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred CCCeEEEEeCCCCCHHHH----HHHHHHcCCCHhHHHHHhCC--CCCCeEEEECCEEEEEEEeccccCccceEEEEEEEE
Confidence 446889999887666655 8888999999999998 454 6889999999975 433 357899999
Q ss_pred cCcEEeeCCCCCcchhHHHHHHHhhCcCCCcccCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 93 SEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTEL 172 (379)
Q Consensus 93 ~d~vl~f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfe~~~LE~iL~~~~~~Le~~~~~l 172 (379)
.|+|++|...+. +.++.+++|+..+ +.... .+.+++- +.+|+.+++.+...++. +
T Consensus 138 ~~~lITv~~~~~---~~~~~v~~rl~~~-~~~~~---------------~~~~~ll--~~lld~ivd~y~~~l~~----i 192 (266)
T 2hn1_A 138 KNLVATFEEREY---WILDSIRSRLKSG-GRMRK---------------LAGDYLA--YTILDAVVDSYFEALLK----I 192 (266)
T ss_dssp TTEEEEEESSSS---CSTHHHHHHHHSS-SHHHH---------------SCHHHHH--HHHHHHHHHHHHHHHHH----H
T ss_pred CCEEEEEEcCCC---ChHHHHHHHHHhC-Cchhh---------------cCHHHHH--HHHHHHHHHHHHHHHHH----H
Confidence 999999987654 3568889998665 22100 1122222 33577777776665553 3
Q ss_pred HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 017008 173 ETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDD 224 (379)
Q Consensus 173 e~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~ 224 (379)
+..+..+.+.+.++.. ..+++|+.+|+++..|++.++|.++++..+.+.+.
T Consensus 193 ~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (266)
T 2hn1_A 193 SDEIEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEH 243 (266)
T ss_dssp HHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444455555545 77899999999999999999999999999998653
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=94.06 E-value=0.24 Score=47.66 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=71.4
Q ss_pred HHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhcccccCCCCCCCCCCCCCC
Q 017008 173 ETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPA 252 (379)
Q Consensus 173 e~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~~~~~~~l~~~~~~~~~~~ 252 (379)
-+.+..-++++++.+....- ....+++..+++.+..+|..+....+-=.. |.+...
T Consensus 197 l~~l~~~id~lE~~v~~~~~---~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~-----L~~~~~---------------- 252 (363)
T 2iub_A 197 LEKIDDEIDVLEEEVLERPE---KETVQRTHQLKRNLVELRKTIWPLREVLSS-----LYRDVP---------------- 252 (363)
T ss_dssp HHHHHHHHHHHHHHTTSSCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSCCS----------------
T ss_pred HHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccc----------------
Confidence 33455556666666554322 234567888888888888887765432111 111100
Q ss_pred CCccccchhhccccccccccCChhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHH
Q 017008 253 SPTIGSKISRASRASLATIRGDENDVEELEMLLE----LREYIDDTEDYINIQLDNHR-NQLIQLELFLSSGTVSLSIYS 327 (379)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE----l~e~i~~te~~i~i~Ld~~r-N~l~~i~~~LTi~t~i~~~~t 327 (379)
. . -..+....+.++.+ +.+.++...+.++..+|... ..-++.+.++-++|++-+++.
T Consensus 253 -~----------------~-~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~Ifl 314 (363)
T 2iub_A 253 -P----------------L-IEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFM 314 (363)
T ss_dssp -S----------------S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c----------------c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 01222222333333 66677777777777777644 455778888888888888888
Q ss_pred HHHhHhcc
Q 017008 328 LVAGIFGM 335 (379)
Q Consensus 328 ~IaGifGM 335 (379)
-.+=+-|.
T Consensus 315 P~T~IaGi 322 (363)
T 2iub_A 315 PLTFIAGI 322 (363)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhh
Confidence 88888885
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=92.83 E-value=1.2 Score=42.28 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhHhcc
Q 017008 287 LREYIDDTEDYINIQLDNHRNQL-IQLELFLSSGTVSLSIYSLVAGIFGM 335 (379)
Q Consensus 287 l~e~i~~te~~i~i~Ld~~rN~l-~~i~~~LTi~t~i~~~~t~IaGifGM 335 (379)
+.+.++...+.++..+|...+.+ ++.+.++-++|++-+++.-.+=+-|.
T Consensus 249 l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi 298 (339)
T 4ev6_A 249 LIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI 298 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555556544443 45666666666666666666666663
No 11
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=79.39 E-value=4.2 Score=22.72 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017008 195 VRKLKSAMTRLTARVQKVRDELEQL 219 (379)
Q Consensus 195 l~~lk~~L~~l~~~v~~vr~~l~~l 219 (379)
++++|.++-+|+..+..+++.+.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 5788999999999999888887764
No 12
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=67.24 E-value=12 Score=24.23 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017008 350 KWVVIFTAIFCAVTFVFIMSYARFKGLVG 378 (379)
Q Consensus 350 ~~v~~~~~~~~~~l~~~~~~~fkrk~wl~ 378 (379)
+|++++++++++++.+.+...+++-|+|.
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34545555555544444444455555554
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=65.97 E-value=8.5 Score=25.13 Aligned_cols=11 Identities=18% Similarity=0.069 Sum_probs=5.5
Q ss_pred HHHHHHHHHhC
Q 017008 365 VFIMSYARFKG 375 (379)
Q Consensus 365 ~~~~~~fkrk~ 375 (379)
++.++|+||++
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 34455555554
No 14
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=64.65 E-value=8.6 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 017008 196 RKLKSAMTRLTARVQKVRDELEQLL 220 (379)
Q Consensus 196 ~~lk~~L~~l~~~v~~vr~~l~~ll 220 (379)
..+|++|.+++..+..+-+.|+++-
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4679999999999988888887653
No 15
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=63.42 E-value=5.3 Score=32.20 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=25.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017008 345 HGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL 376 (379)
Q Consensus 345 ~~~~f~~v~~~~~~~~~~l~~~~~~~fkrk~w 376 (379)
..+.|.++++++++.++.++.+|+.|.|-||.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 45667778888888888888899999998763
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=62.79 E-value=8.9 Score=26.19 Aligned_cols=7 Identities=0% Similarity=0.121 Sum_probs=4.3
Q ss_pred HHHHHhC
Q 017008 369 SYARFKG 375 (379)
Q Consensus 369 ~~fkrk~ 375 (379)
.||||++
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 5666664
No 17
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=62.47 E-value=42 Score=24.35 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 160 AICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDE 215 (379)
Q Consensus 160 ~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~ 215 (379)
+-+..|+..++.|......+|.+..+ .=..||+++..|+..+.+.++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~s--------sQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYES--------MQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcccCCC
Confidence 33445555555555555444444332 2246799999999999885543
No 18
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=62.15 E-value=6.5 Score=26.86 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=4.5
Q ss_pred HHHHHhC
Q 017008 369 SYARFKG 375 (379)
Q Consensus 369 ~~fkrk~ 375 (379)
.||||++
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 5676664
No 19
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.14 E-value=15 Score=23.97 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 017008 357 AIFCAVTFVFIMSYARFKGL 376 (379)
Q Consensus 357 ~~~~~~l~~~~~~~fkrk~w 376 (379)
+++.+++.++...|+||++-
T Consensus 21 vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhheehhhh
Confidence 33444555566778888764
No 20
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.62 E-value=22 Score=23.13 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=5.3
Q ss_pred HHHHHHHHHhC
Q 017008 365 VFIMSYARFKG 375 (379)
Q Consensus 365 ~~~~~~fkrk~ 375 (379)
.+.++|+|||+
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 34445555554
No 21
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=53.29 E-value=14 Score=23.27 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 017008 364 FVFIMSYARFK 374 (379)
Q Consensus 364 ~~~~~~~fkrk 374 (379)
.+++.+|++||
T Consensus 27 i~~l~~~~~rr 37 (38)
T 2k1k_A 27 LLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHeec
Confidence 33444455444
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.35 E-value=1.7e+02 Score=27.99 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhhc
Q 017008 155 EVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK 234 (379)
Q Consensus 155 E~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~~d~dm~~m~Lt~~ 234 (379)
|.++.++.+.||.++..|...+ ...+.+|+.|+..|..++..++++.-.|+--.+.-.-=...++..+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V------------~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~ 175 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKV------------IEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHK 175 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhh
Q ss_pred ccccCCCCCCCCCCCCCCCCccccchhhccccccccccCChhhHHHHHHHHH
Q 017008 235 MAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLE 286 (379)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eele~LLE 286 (379)
. +..++++.+..|+
T Consensus 176 v--------------------------------------D~e~ye~qqKQL~ 189 (390)
T 1deq_A 176 V--------------------------------------DLEDYKNQQKQLE 189 (390)
T ss_pred c--------------------------------------cHHHHHHHHHHHH
No 23
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=40.87 E-value=49 Score=23.27 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 017008 289 EYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIF 333 (379)
Q Consensus 289 e~i~~te~~i~i~Ld~~rN~l~~i~~~LTi~t~i~~~~t~IaGif 333 (379)
..+..+..|-+-.....+|++++..+.+..... -.+.++|+|
T Consensus 23 ~~l~~AN~YTD~KF~qL~nKi~k~~kr~~aGiA---~a~A~asl~ 64 (64)
T 3lt7_A 23 KAIRESNQYTDHKFHQLENRLDKLEKRLLKLLA---SSAALNSLF 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHhcC
Confidence 445666677777788899999999998776544 446777776
No 24
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=39.22 E-value=25 Score=22.05 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.3
Q ss_pred HHHHHH
Q 017008 368 MSYARF 373 (379)
Q Consensus 368 ~~~fkr 373 (379)
+++++|
T Consensus 33 ~~~~~r 38 (41)
T 2k9y_A 33 GFFIHR 38 (41)
T ss_dssp HHSSSS
T ss_pred heeEee
Confidence 334433
No 25
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=38.37 E-value=73 Score=27.31 Aligned_cols=69 Identities=23% Similarity=0.395 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017008 154 LEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVR-KLKSAMTRLTARVQKVRDELEQLLDDD 223 (379)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~-~lk~~L~~l~~~v~~vr~~l~~ll~~d 223 (379)
+...+......|...+..+...+.|..+++..++.. ..+.++ ++++++..++.++.|..+.|..-+...
T Consensus 60 l~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~-~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~ 129 (191)
T 1nfn_A 60 LRALMDETMKELKAYKSELEEQLTPVAEETRARLSK-ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS 129 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555555555555555555555555444432 234444 578899999999999999998877643
No 26
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.88 E-value=87 Score=20.47 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 017008 161 ICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTAR 208 (379)
Q Consensus 161 ~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~ 208 (379)
-+..||..++.|......++.+.++ .=..+|+++..|+..
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~s--------sq~KlKqRit~lE~~ 45 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNA--------TQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc
Confidence 3444555555555544444443322 123567788777764
No 27
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=36.40 E-value=1.6e+02 Score=26.90 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 154 LEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQ 218 (379)
Q Consensus 154 LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ 218 (379)
||++-......+=+++..|...+..+..+|...+ ..+-.++..|..++..+...+..
T Consensus 26 Le~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~--------~~~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 26 LECVTNISLANIIRQLSSLSKYAEDIFGELFNEA--------HSFSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhccc
Confidence 8888877777777788888888888888886643 33344555555555555555543
No 28
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=34.43 E-value=1.5e+02 Score=26.05 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 287 LREYIDDTEDYINIQLDNHRNQLIQ 311 (379)
Q Consensus 287 l~e~i~~te~~i~i~Ld~~rN~l~~ 311 (379)
+.+.++...++++...|+.+|++|+
T Consensus 239 ~~e~~~~~re~l~~l~d~~~s~~~e 263 (264)
T 3nvo_A 239 GLDEIDACIARTGIMADEIAQVMQE 263 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4557777777788888888888874
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.83 E-value=1.5e+02 Score=29.63 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=9.1
Q ss_pred CChhhHHHHHHHHH
Q 017008 273 GDENDVEELEMLLE 286 (379)
Q Consensus 273 ~~~~~~eele~LLE 286 (379)
-+..++++++-.||
T Consensus 173 vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 173 VDLKDYEDQQKQLE 186 (562)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 35667777766666
No 30
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=30.71 E-value=90 Score=21.11 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017008 193 DRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (379)
Q Consensus 193 ~~l~~lk~~L~~l~~~v~~vr~~l~~ll~ 221 (379)
..+|.+|.++.+|++....+..++++=..
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqk 38 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQR 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888877777777765443
No 31
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=27.24 E-value=4.1e+02 Score=26.27 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhcCCh
Q 017008 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQK-----VRDELEQLLDDDD 224 (379)
Q Consensus 150 e~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~-----vr~~l~~ll~~d~ 224 (379)
++..||.++..+....+.+-..|...... |..-.+.-+.+.-.-+..+|+....|+..+.. ..|++++.++--.
T Consensus 147 q~~~LekAl~s~~~i~~~e~~~l~~L~~A-L~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dmsa 225 (526)
T 3iyk_A 147 QFDILNKAVTSYNKILTEEDLQMRRLATA-LQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTA 225 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchH
Confidence 45579999999888888877776664432 22212223344444567778888888887765 5577778877666
Q ss_pred hhh
Q 017008 225 DMA 227 (379)
Q Consensus 225 dm~ 227 (379)
|++
T Consensus 226 eI~ 228 (526)
T 3iyk_A 226 DVL 228 (526)
T ss_pred HHH
Confidence 654
No 32
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.25 E-value=2e+02 Score=21.80 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017008 192 LDRVRKLKSAMTRLTARVQKVR 213 (379)
Q Consensus 192 L~~l~~lk~~L~~l~~~v~~vr 213 (379)
..+|+..|++|..+++.+..++
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877765543
No 33
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=25.15 E-value=2.6e+02 Score=24.55 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017008 153 ALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLD 221 (379)
Q Consensus 153 ~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~~ll~ 221 (379)
++-++++.+++.+- .+-+.+..-++++++.+.... -....+++..+++.+..+|.++..+.+
T Consensus 172 ll~~lld~ivd~y~----~~l~~i~~~id~lE~~v~~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~ 233 (269)
T 2bbh_A 172 LLYSLIDALVDDYF----VLLEKIDDEIDVLEEEVLERP---EKETVQRTHQLKRNLVELRKTIWPLRE 233 (269)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444432 223345555666666654432 134456889999999999999887755
No 34
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=25.08 E-value=1.6e+02 Score=22.25 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHH
Q 017008 157 ALEAICSFLAARTTELETAAYPALDELTSKISS-RNLDRVRKLKSAMTRLTA 207 (379)
Q Consensus 157 iL~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~-~~L~~l~~lk~~L~~l~~ 207 (379)
-|+.+...|+..+..+...+..++++|..+++. ..|-++...-.+.+-++.
T Consensus 17 ~Ld~vs~~f~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RN 68 (92)
T 2g0u_A 17 YLTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRN 68 (92)
T ss_dssp HHHHHHGGGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999876653 445555544444444443
No 35
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=24.77 E-value=2.1e+02 Score=21.13 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 017008 158 LEAICSFLAARTTELETAAYPALDELTSKISS-RNLDRVRKLKSAMTRLTA----RVQKVRDELEQLLDD 222 (379)
Q Consensus 158 L~~~~~~Le~~~~~le~~~~~~ld~l~~~~~~-~~L~~l~~lk~~L~~l~~----~v~~vr~~l~~ll~~ 222 (379)
|+.+...|+.-+..+...+..++++|..+++. ..|-++...-.+.+-++. .++.++|....+++.
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~~ 81 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILEH 81 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888988999999999999999887654 334444433344443333 344566666666653
No 36
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.85 E-value=31 Score=21.28 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhC
Q 017008 361 AVTFVFIMSYARFKG 375 (379)
Q Consensus 361 ~~l~~~~~~~fkrk~ 375 (379)
+++..+...|.||++
T Consensus 21 vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 21 LILVVVVGILIKRRR 35 (35)
T ss_dssp HHHTTTTTHHHHHCC
T ss_pred HHHHHHhheEEeecC
Confidence 333445567777764
No 37
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=23.69 E-value=96 Score=22.58 Aligned_cols=13 Identities=54% Similarity=0.457 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhH
Q 017008 164 FLAARTTELETAA 176 (379)
Q Consensus 164 ~Le~~~~~le~~~ 176 (379)
.+++++.+||..+
T Consensus 11 ~le~Ri~~LE~kl 23 (78)
T 3efg_A 11 ELEARLVELETRL 23 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555544
No 38
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.18 E-value=2.9e+02 Score=22.03 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 150 EFRALEVALEAICSFLAARTTELETAAYPALDELTS-KISSRNLDRVRKLKSAMTRLTARVQKVRDEL 216 (379)
Q Consensus 150 e~~~LE~iL~~~~~~Le~~~~~le~~~~~~ld~l~~-~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l 216 (379)
|+.-+-.=|...|..++..+++|++.+.-+...-.+ +++. ..|..=|+-+..++..+..+++.|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~---~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPA---GDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566677888888888888876543321111 2222 245555667777777777777665
No 39
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.92 E-value=2.5e+02 Score=21.28 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=24.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 017008 146 ESPFEFRALEVALEAICSFLAARTTELETAAY 177 (379)
Q Consensus 146 ~lpfe~~~LE~iL~~~~~~Le~~~~~le~~~~ 177 (379)
.|..-|.-|...++.+-..|+.++++|+..+.
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566999999999999999988888764
No 40
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.10 E-value=3.2e+02 Score=22.20 Aligned_cols=59 Identities=10% Similarity=0.221 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017008 158 LEAICSFLAARTTELETAAYPALDELTS-KISSRNLDRVRKLKSAMTRLTARVQKVRDELE 217 (379)
Q Consensus 158 L~~~~~~Le~~~~~le~~~~~~ld~l~~-~~~~~~L~~l~~lk~~L~~l~~~v~~vr~~l~ 217 (379)
|+.-++.|=.++++|++.+..+=.+... ++.+ ....+-.+.+++..+...+..+.+-+.
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP-~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQP-AKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777766544433333 2322 223344445555555555554444443
No 41
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.00 E-value=2.8e+02 Score=27.15 Aligned_cols=29 Identities=7% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017008 192 LDRVRKLKSAMTRLTARVQKVRDELEQLL 220 (379)
Q Consensus 192 L~~l~~lk~~L~~l~~~v~~vr~~l~~ll 220 (379)
+.+|+.|+..|..++..++++...+..-+
T Consensus 131 i~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 131 VNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777666655443
No 42
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.69 E-value=1.5e+02 Score=20.87 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017008 356 TAIFCAVTFVFIMSYAR 372 (379)
Q Consensus 356 ~~~~~~~l~~~~~~~fk 372 (379)
.+++++++|+++..||-
T Consensus 15 Gg~~~lll~~glcI~cc 31 (70)
T 2klu_A 15 GGVAGLLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 33445666666666643
No 43
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=21.67 E-value=1.5e+02 Score=18.10 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=5.8
Q ss_pred cccCcchHHHHHHH
Q 017008 342 NENHGYMFKWVVIF 355 (379)
Q Consensus 342 e~~~~~~f~~v~~~ 355 (379)
|+ ++-|-+.++.+
T Consensus 2 E~-~l~GTl~~V~i 14 (34)
T 3s8f_C 2 EE-KPKGALAVILV 14 (34)
T ss_dssp ---CCHHHHHHHHH
T ss_pred CC-CccceehHHHH
Confidence 44 56666544443
Done!