Query 017009
Match_columns 379
No_of_seqs 299 out of 1685
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 04:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0216 PrfA Protein chain rel 100.0 6E-113 1E-117 829.7 35.6 348 26-377 8-361 (363)
2 TIGR00020 prfB peptide chain r 100.0 2E-108 4E-113 818.5 43.7 363 3-368 1-363 (364)
3 PRK00578 prfB peptide chain re 100.0 2E-107 5E-112 811.9 43.3 365 4-371 2-366 (367)
4 PRK06746 peptide chain release 100.0 3E-105 6E-110 783.4 37.4 325 41-368 1-325 (326)
5 PRK07342 peptide chain release 100.0 9E-105 2E-109 783.0 36.9 327 40-369 2-328 (339)
6 PRK05589 peptide chain release 100.0 2E-104 4E-109 778.6 37.8 324 41-368 1-324 (325)
7 TIGR00019 prfA peptide chain r 100.0 2E-102 5E-107 773.3 39.5 345 26-376 8-357 (360)
8 PRK00591 prfA peptide chain re 100.0 6E-101 1E-105 763.4 40.5 346 26-376 7-357 (359)
9 PRK08787 peptide chain release 100.0 1.4E-99 3E-104 738.1 34.8 311 63-377 2-312 (313)
10 KOG2726 Mitochondrial polypept 100.0 2.4E-88 5.3E-93 669.0 31.3 327 35-374 51-382 (386)
11 COG1186 PrfB Protein chain rel 100.0 3.2E-81 7E-86 587.4 19.2 238 130-368 1-238 (239)
12 TIGR03072 release_prfH putativ 100.0 1.4E-67 3.1E-72 487.5 23.8 197 130-332 1-198 (200)
13 PRK08179 prfH peptide chain re 100.0 4E-67 8.8E-72 484.5 22.7 196 130-331 2-198 (200)
14 PF00472 RF-1: RF-1 domain; I 100.0 4.1E-36 8.9E-41 255.9 9.4 109 232-341 4-113 (113)
15 PF03462 PCRF: PCRF domain; I 100.0 3.6E-31 7.7E-36 226.1 12.6 106 92-197 6-115 (115)
16 PRK09256 hypothetical protein; 99.9 1.6E-22 3.5E-27 177.9 9.7 69 234-302 7-99 (138)
17 KOG3429 Predicted peptidyl-tRN 99.6 6.5E-16 1.4E-20 137.8 6.3 69 234-302 34-127 (172)
18 PRK10636 putative ABC transpor 82.7 7.6 0.00016 42.4 9.9 43 26-68 571-615 (638)
19 PRK11147 ABC transporter ATPas 73.2 6.9 0.00015 42.6 6.1 43 26-68 576-619 (635)
20 TIGR03545 conserved hypothetic 72.5 34 0.00075 37.1 11.0 60 4-68 166-229 (555)
21 KOG0971 Microtubule-associated 66.1 95 0.0021 35.8 12.7 56 58-117 287-346 (1243)
22 PRK11546 zraP zinc resistance 61.0 71 0.0015 28.7 8.9 60 6-68 47-106 (143)
23 PF13710 ACT_5: ACT domain; PD 55.6 34 0.00074 26.0 5.3 35 154-188 9-43 (63)
24 COG0216 PrfA Protein chain rel 50.5 2.1E+02 0.0045 29.5 11.2 88 7-117 5-104 (363)
25 PRK03918 chromosome segregatio 48.5 2.3E+02 0.0049 31.8 12.5 17 27-43 565-581 (880)
26 PRK10869 recombination and rep 47.4 3.4E+02 0.0073 29.4 13.1 24 48-71 293-316 (553)
27 COG1340 Uncharacterized archae 46.8 3.2E+02 0.0069 27.5 14.0 63 9-73 90-153 (294)
28 KOG0995 Centromere-associated 46.7 2.1E+02 0.0045 31.4 11.0 54 24-79 234-287 (581)
29 PRK04863 mukB cell division pr 45.8 98 0.0021 37.6 9.4 25 135-159 486-510 (1486)
30 smart00150 SPEC Spectrin repea 45.1 1.4E+02 0.003 22.8 9.9 47 27-73 7-53 (101)
31 PF10458 Val_tRNA-synt_C: Valy 45.1 45 0.00097 25.6 4.5 23 27-49 13-35 (66)
32 PRK06737 acetolactate synthase 43.9 67 0.0015 25.7 5.4 36 154-189 19-54 (76)
33 PRK11152 ilvM acetolactate syn 43.3 64 0.0014 25.8 5.2 37 155-191 21-57 (76)
34 PRK03918 chromosome segregatio 39.3 3E+02 0.0066 30.8 11.7 30 46-75 261-290 (880)
35 PF07851 TMPIT: TMPIT-like pro 39.2 2.7E+02 0.0058 28.5 10.1 40 93-137 65-104 (330)
36 PF03962 Mnd1: Mnd1 family; I 39.0 1.5E+02 0.0032 27.6 7.7 9 33-41 118-126 (188)
37 PF06721 DUF1204: Protein of u 37.1 2.7E+02 0.0059 26.4 8.9 32 96-127 138-169 (228)
38 KOG1760 Molecular chaperone Pr 36.1 3.1E+02 0.0067 24.3 9.1 44 46-89 15-61 (131)
39 PF07426 Dynactin_p22: Dynacti 36.0 2.8E+02 0.0062 25.5 9.0 62 24-85 4-68 (174)
40 PRK04778 septation ring format 35.4 3.8E+02 0.0082 29.0 11.3 36 6-41 253-291 (569)
41 PF05546 She9_MDM33: She9 / Md 34.9 3.4E+02 0.0073 26.0 9.4 40 4-43 11-50 (207)
42 KOG1697 Mitochondrial/chloropl 34.1 31 0.00066 33.9 2.4 30 210-243 152-181 (275)
43 PF07303 Occludin_ELL: Occludi 33.2 1.4E+02 0.0031 25.1 6.0 51 27-78 31-83 (101)
44 PF05565 Sipho_Gp157: Siphovir 32.6 3.6E+02 0.0078 24.3 9.0 44 27-72 3-47 (162)
45 COG0497 RecN ATPase involved i 32.5 6.9E+02 0.015 27.4 12.4 44 27-72 275-318 (557)
46 PRK13562 acetolactate synthase 32.4 1.2E+02 0.0026 24.9 5.2 34 156-189 21-55 (84)
47 PRK05431 seryl-tRNA synthetase 31.7 5.7E+02 0.012 26.7 11.5 17 353-369 381-400 (425)
48 KOG2150 CCR4-NOT transcription 31.2 2.8E+02 0.0061 30.4 9.2 22 96-117 122-143 (575)
49 PF08317 Spc7: Spc7 kinetochor 31.0 5.5E+02 0.012 25.6 17.4 111 27-169 186-300 (325)
50 PTZ00419 valyl-tRNA synthetase 30.9 2E+02 0.0043 33.4 8.7 54 27-81 938-991 (995)
51 cd01020 TroA_b Metal binding p 30.0 1.4E+02 0.0029 28.8 6.2 21 42-62 93-113 (264)
52 PF08399 VWA_N: VWA N-terminal 29.9 28 0.0006 30.4 1.2 23 249-274 51-73 (123)
53 PF12777 MT: Microtubule-bindi 29.7 1.5E+02 0.0033 29.8 6.7 42 33-76 171-212 (344)
54 PF03101 FAR1: FAR1 DNA-bindin 29.6 73 0.0016 25.1 3.6 38 152-189 1-39 (91)
55 PF04912 Dynamitin: Dynamitin 29.3 6.3E+02 0.014 25.8 13.0 35 6-41 243-277 (388)
56 PF10303 DUF2408: Protein of u 28.6 2.7E+02 0.0059 24.5 7.3 102 4-118 16-127 (134)
57 KOG3091 Nuclear pore complex, 28.4 3.7E+02 0.0079 29.0 9.3 18 27-44 413-430 (508)
58 PF00587 tRNA-synt_2b: tRNA sy 28.1 1.6E+02 0.0034 26.2 5.9 48 137-185 118-166 (173)
59 PF14257 DUF4349: Domain of un 27.9 2.5E+02 0.0054 26.9 7.6 15 101-115 174-188 (262)
60 PF13801 Metal_resist: Heavy-m 27.8 3.1E+02 0.0068 21.8 8.1 38 28-67 66-103 (125)
61 PF06160 EzrA: Septation ring 27.8 6.3E+02 0.014 27.4 11.3 33 27-59 163-198 (560)
62 PF02815 MIR: MIR domain; Int 26.7 98 0.0021 28.1 4.4 36 246-281 123-158 (190)
63 PF14048 MBD_C: C-terminal dom 26.4 34 0.00074 28.7 1.2 52 246-297 27-95 (96)
64 TIGR02231 conserved hypothetic 26.2 4.5E+02 0.0098 27.9 9.8 37 101-137 150-189 (525)
65 cd01137 PsaA Metal binding pro 25.9 2.5E+02 0.0054 27.4 7.3 20 42-61 115-134 (287)
66 KOG4796 RNA polymerase II elon 25.7 2.5E+02 0.0054 30.6 7.6 30 42-71 565-594 (604)
67 KOG1489 Predicted GTP-binding 25.3 1.9E+02 0.0041 29.8 6.3 108 129-254 44-161 (366)
68 COG3978 Acetolactate synthase 25.3 1.1E+02 0.0024 25.1 3.8 49 148-196 14-62 (86)
69 cd01145 TroA_c Periplasmic bin 25.0 2.1E+02 0.0045 26.3 6.3 19 42-60 106-124 (203)
70 KOG3274 Uncharacterized conser 23.9 28 0.00061 32.8 0.2 108 151-268 76-184 (210)
71 PLN02943 aminoacyl-tRNA ligase 23.8 2.6E+02 0.0056 32.4 7.9 52 27-79 898-949 (958)
72 PF12325 TMF_TATA_bd: TATA ele 23.4 4.9E+02 0.011 22.6 11.5 53 56-112 56-112 (120)
73 PF07445 priB_priC: Primosomal 23.0 5.9E+02 0.013 23.3 9.6 54 26-80 71-124 (173)
74 PLN02320 seryl-tRNA synthetase 22.7 7.7E+02 0.017 26.7 10.6 51 21-71 63-113 (502)
75 PRK08178 acetolactate synthase 21.9 1.9E+02 0.0042 24.3 4.8 35 157-191 28-62 (96)
76 cd01018 ZntC Metal binding pro 21.7 2.5E+02 0.0055 26.9 6.4 20 42-61 110-129 (266)
77 COG4026 Uncharacterized protei 21.6 7.7E+02 0.017 24.2 11.8 47 98-144 165-213 (290)
78 PF11172 DUF2959: Protein of u 21.6 7.1E+02 0.015 23.7 11.7 68 6-79 39-107 (201)
79 PRK04863 mukB cell division pr 21.5 6.3E+02 0.014 31.0 10.7 40 6-47 297-336 (1486)
80 PRK10869 recombination and rep 21.0 9E+02 0.02 26.1 10.9 12 175-186 406-417 (553)
81 COG1196 Smc Chromosome segrega 20.8 1E+03 0.022 28.3 12.0 108 3-116 166-280 (1163)
82 PLN03229 acetyl-coenzyme A car 20.5 9.1E+02 0.02 27.5 10.9 109 6-114 459-582 (762)
83 PF06825 HSBP1: Heat shock fac 20.3 1.1E+02 0.0024 23.1 2.8 37 8-44 9-47 (54)
84 PRK09545 znuA high-affinity zi 20.3 4.5E+02 0.0097 26.1 7.9 18 43-60 144-161 (311)
85 PLN02381 valyl-tRNA synthetase 20.3 4.1E+02 0.0089 31.3 8.6 52 27-79 1006-1057(1066)
86 PRK01919 tatB sec-independent 20.1 4.7E+02 0.01 24.3 7.3 21 50-70 26-46 (169)
No 1
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-113 Score=829.66 Aligned_cols=348 Identities=30% Similarity=0.470 Sum_probs=334.2
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei 105 (379)
+|+.+..++.+|+..|++|++.+|++++++++++++.|.+++..|.+|++..+++.++.+|+.+ +.|++|.+++++++
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~--~~D~em~ema~~Ei 85 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE--EKDPEMREMAEEEI 85 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence 5778888999999999999999999999999999999999999999999999999999999875 36999999999999
Q ss_pred HHHHHHHHHHH----HHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEE
Q 017009 106 KELNKALDQFE----LTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSA 181 (379)
Q Consensus 106 ~~l~~~l~~le----l~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~ 181 (379)
.+++.++..|+ +.+||+||+|.+||||||+||+||+||++||++||+||.+||+.+||+|+|++.++++.||||++
T Consensus 86 ~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEi 165 (363)
T COG0216 86 KELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEI 165 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEE
Confidence 99999998875 66777999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccC
Q 017009 182 VIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 261 (379)
Q Consensus 182 ~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 261 (379)
++.|+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||++++ ..+++|+++||+|+|||||||||||||+|+
T Consensus 166 i~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee-~~ei~I~~~DlrIDt~RsSGaGGQhVNtTd 244 (363)
T COG0216 166 IASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEE-VEEIEINPKDLRIDTFRSSGAGGQHVNTTD 244 (363)
T ss_pred EEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCc-ccccccChHHceeeeeecCCCCCCCcCccc
Confidence 9999999999999999999999999999999999999999999999843 357999999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccCCcceeecCCCcccccc
Q 017009 262 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYKLVKDV 340 (379)
Q Consensus 262 saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~-~~g~~IRtY~~~~~~~v~Dh 340 (379)
|||||||+||||+|.||++||||+||++||++|++||++.+.+++.++..+.|++++++ +||++|||||| ||+|||||
T Consensus 245 SAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDH 323 (363)
T COG0216 245 SAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDH 323 (363)
T ss_pred hhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999996 99999999999 89999999
Q ss_pred ccCccccCcccccC-CCcHHHHHHHHHHHHhchhccCC
Q 017009 341 RTGHETSDIVSVMD-GELEPFIKSYLKYKYSMSLSASD 377 (379)
Q Consensus 341 R~~~~~~~~~~vm~-G~ld~~i~~~~~~~~~~~~~~~~ 377 (379)
|+|+++++|+.||+ |+||++|++++.+.+.++|.++.
T Consensus 324 RI~lTl~kLd~vm~gG~LDeii~aLi~~~q~~~L~~l~ 361 (363)
T COG0216 324 RINLTLYKLDEVMEGGKLDEIIDALIAEDQAEQLAELG 361 (363)
T ss_pred hcccccccHHHHhccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 59999999999999999888754
No 2
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=100.00 E-value=1.8e-108 Score=818.47 Aligned_cols=363 Identities=43% Similarity=0.776 Sum_probs=351.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017009 3 DFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVT 82 (379)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~ 82 (379)
++.+++..++++..++..++.+++++.++.++.+|+..+++|+||+||+++++++++++.|+++++.|+.|++..+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~ 80 (364)
T TIGR00020 1 EINEVNNRIEDLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSE 80 (364)
T ss_pred CchHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCC
Q 017009 83 IVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQR 162 (379)
Q Consensus 83 l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~ 162 (379)
+.+|+++ ++|++|++++..++..+.+.++++++..||+||+|.++|+|||+||+||+||++||++||+||++||+++|
T Consensus 81 l~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g 158 (364)
T TIGR00020 81 LLELAVE--EDDEETFNELDAELKALEKKLAELELRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRG 158 (364)
T ss_pred HHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999864 45999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCe
Q 017009 163 YKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDL 242 (379)
Q Consensus 163 ~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl 242 (379)
|++++++.++++.+|||+|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|.+++ .+++.|+++|+
T Consensus 159 ~~~evi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~-~~~~~i~~~d~ 237 (364)
T TIGR00020 159 FKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDD-DIDIEIKPEDL 237 (364)
T ss_pred CEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCc-ccceecccccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999744 46889999999
Q ss_pred eeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 017009 243 EISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 322 (379)
Q Consensus 243 ~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~ 322 (379)
+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||+.||++|+++|++++.+++.++.+..|+.+..++|
T Consensus 238 ~~~~~rssG~GGQ~VNkt~saVri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~r 317 (364)
T TIGR00020 238 RIDTYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGW 317 (364)
T ss_pred EEEEeeCCCCCCccccccceEEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred cCCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHHH
Q 017009 323 GQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 368 (379)
Q Consensus 323 g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~ 368 (379)
|++||||||+||+||||||||++++||+.||+|+||+||++|+.|.
T Consensus 318 g~~IRtY~~~~~~rVtDhR~g~~~~~l~~vl~G~Ld~~I~a~~~~~ 363 (364)
T TIGR00020 318 GSQIRSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKWK 363 (364)
T ss_pred cCCeEEEECCCCCcccccccCCeecChHHHhCCChHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999863
No 3
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=100.00 E-value=2.2e-107 Score=811.94 Aligned_cols=365 Identities=45% Similarity=0.815 Sum_probs=352.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017009 4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTI 83 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l 83 (379)
+.++++.|+++..++..++.+++++.+.+++.+|+.++++|+||+||+++++++++++.|+++++.|++|+...++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~ 81 (367)
T PRK00578 2 INEISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEEL 81 (367)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCc
Q 017009 84 VKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRY 163 (379)
Q Consensus 84 ~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~ 163 (379)
.+|+++ +.|++|+++|..++..+...++++++..||+||+|.++|+|||+||+||+||++||++||+||.+||+.+||
T Consensus 82 ~ell~~--e~D~el~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~ 159 (367)
T PRK00578 82 LELAEE--EDDEETLAEAEAELKALEKKLAALELERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGF 159 (367)
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999864 359999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCee
Q 017009 164 KTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLE 243 (379)
Q Consensus 164 ~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~ 243 (379)
++++++.++++.+|||+|++.|+|++||++|++|+|||||||+|||+++||||||||+|+|+|.+++ ..++.|+++||+
T Consensus 160 ~~evi~~~~~~~gg~ks~~~~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~-~~~~~i~~~dl~ 238 (367)
T PRK00578 160 KVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDD-TIEIEINPKDLR 238 (367)
T ss_pred EEEEEecCCCCCCCeeEEEEEEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCC-ccccccChhhEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999743 357899999999
Q ss_pred eeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 017009 244 ISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWG 323 (379)
Q Consensus 244 i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g 323 (379)
++|+|||||||||||||+|||||+|+||||+|.||++|||++||+.|+++|+++|++++.+++.++.+..|+.+..++||
T Consensus 239 ~~~~rssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~rg 318 (367)
T PRK00578 239 IDTYRSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWG 318 (367)
T ss_pred EEEeeCCCCCCCcccceeeEEEEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred CCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHHHHhc
Q 017009 324 QQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSM 371 (379)
Q Consensus 324 ~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~ 371 (379)
++||||||+||+||||||||++++||++||+|+||+||++|+.+....
T Consensus 319 ~~IRtYn~~p~~rVtDhR~g~~~~~l~~vl~G~ld~~I~~l~~~~~~~ 366 (367)
T PRK00578 319 SQIRSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGFIEAYLRWRASQ 366 (367)
T ss_pred CCeEEEECCCCceeeeeccCceecCHHHhhCCChHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999886543
No 4
>PRK06746 peptide chain release factor 2; Provisional
Probab=100.00 E-value=2.6e-105 Score=783.35 Aligned_cols=325 Identities=44% Similarity=0.788 Sum_probs=315.6
Q ss_pred hcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017009 41 AADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120 (379)
Q Consensus 41 ~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~l 120 (379)
|..|+||+|+++|++++++++.|+++++.|++|.+..+|+.++.+|+.+ +.|++|.+++.+++..+...++++++.+|
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~--~~d~e~~~~a~~e~~~l~~~l~~le~~~l 78 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKE--EYDEDLHEELESEVKGLIQEMNEYELQLL 78 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999999999999999999864 45899999999999999999999999999
Q ss_pred CCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccc
Q 017009 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGT 200 (379)
Q Consensus 121 l~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~Gv 200 (379)
|+||+|.++|+|||+||+||+||++||++||+||++||+++||++++++..+++.+|||+|+|.|+|++||++|++|+||
T Consensus 79 ~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~Gv 158 (326)
T PRK06746 79 LSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGV 158 (326)
T ss_pred cCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCc
Q 017009 201 HRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEE 280 (379)
Q Consensus 201 HRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~ 280 (379)
|||||+|||+++||||||||+|.|+|.+++ .+++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 159 Hrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~-~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~~ 237 (326)
T PRK06746 159 HRLVRISPFDSSGRRHTSFVSCEVVPEFND-EVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSE 237 (326)
T ss_pred EEEEecCCCCCCCCeEeeEEEEEEecCcCC-ccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECCC
Confidence 999999999999999999999999999743 4789999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcceeecCCCccccccccCccccCcccccCCCcHHH
Q 017009 281 RSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 360 (379)
Q Consensus 281 RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~ 360 (379)
|||++||+.|+++|++||++++.+++.++....|+.++.++||++||||||+||+||||||||++++||+.||+|+||+|
T Consensus 238 RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~~rg~~IRtYnf~p~~rVtDhR~~~~~~~l~~vl~G~ld~~ 317 (326)
T PRK06746 238 RSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWGSQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPF 317 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCCeEEEECCCCceeeeeecCceecChHHhhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 017009 361 IKSYLKYK 368 (379)
Q Consensus 361 i~~~~~~~ 368 (379)
|++++.|.
T Consensus 318 I~~~~~~~ 325 (326)
T PRK06746 318 IDAYLRSR 325 (326)
T ss_pred HHHHHHcc
Confidence 99999763
No 5
>PRK07342 peptide chain release factor 2; Provisional
Probab=100.00 E-value=8.9e-105 Score=783.00 Aligned_cols=327 Identities=42% Similarity=0.737 Sum_probs=314.6
Q ss_pred HhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 017009 40 KAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQ 119 (379)
Q Consensus 40 ~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ 119 (379)
++++|+||+||+++++++++++.|++.++.|+++....+++..+.+|+++ ++|++|++++..++..+.+.++++++..
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~--e~D~el~~~a~~e~~~l~~~l~~~el~~ 79 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEE--EGDKSIVEDAEKTIRDLKDEIDRRQIDA 79 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999864 3599999999999999999999999999
Q ss_pred cCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhccccccc
Q 017009 120 LLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKG 199 (379)
Q Consensus 120 ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~G 199 (379)
||++|+|.++|+|+|+||+||+||++||++||+||++||+++||++++++.++++.+|||+|++.|+|++||++|++|+|
T Consensus 80 lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~G 159 (339)
T PRK07342 80 LLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESG 159 (339)
T ss_pred HhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecC
Q 017009 200 THRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTE 279 (379)
Q Consensus 200 vHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~ 279 (379)
||||||+|||+++||||||||+|+|+|.+++ .+++.|+++||+++++|||||||||||||+|||||+|+||||+|+||+
T Consensus 160 vHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~-~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~~ 238 (339)
T PRK07342 160 VHRLVRISPYDSNARRHTSFASIWVYPVIDD-NIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQ 238 (339)
T ss_pred eeEEEecCCCCCCCCeEeEEEEEEEEcCCCc-ccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEECC
Confidence 9999999999999999999999999998743 467899999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcceeecCCCccccccccCccccCcccccCCCcHH
Q 017009 280 ERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEP 359 (379)
Q Consensus 280 ~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~ 359 (379)
+|||++||+.||++|+++|++++.+++.++.+..+..+..+.||++||||||+||+||||||||++++||++||+|+||+
T Consensus 239 eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i~~g~~IRtY~~~p~~rVtDhRtg~~~~~l~~vl~G~Ld~ 318 (339)
T PRK07342 239 ERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDIGWGHQIRSYVLQPYQLVKDLRTGVESTNPQDVLDGDLNE 318 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCcCCccCCCCceeeeeccCceecChHHhhCCCHHH
Confidence 99999999999999999999999998888888777777778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 017009 360 FIKSYLKYKY 369 (379)
Q Consensus 360 ~i~~~~~~~~ 369 (379)
||++|+.|..
T Consensus 319 ~I~a~l~~~~ 328 (339)
T PRK07342 319 FMEAALAHRI 328 (339)
T ss_pred HHHHHHHHHh
Confidence 9999999854
No 6
>PRK05589 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.7e-104 Score=778.64 Aligned_cols=324 Identities=48% Similarity=0.849 Sum_probs=312.3
Q ss_pred hcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhc
Q 017009 41 AADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120 (379)
Q Consensus 41 ~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~l 120 (379)
+++|+||+||+++++++++++.|+.+++.|+.|+...+|+.++.+|+.+ +|+++.+++.+++..|++.++++++.+|
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~---~d~e~~~~a~~e~~~l~~~l~~~e~~~l 77 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE---EDDEMKKEIISEVKNIKEEIDRFKIETL 77 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999854 2678999999999999999999999999
Q ss_pred CCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccc
Q 017009 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGT 200 (379)
Q Consensus 121 l~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~Gv 200 (379)
|+||+|.++|+|||+||+||+||++||++|++||++||+++||++++++.++++.+|||+|+|.|+|++||++|++|+||
T Consensus 78 ~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~Gv 157 (325)
T PRK05589 78 LSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGI 157 (325)
T ss_pred CCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCc
Q 017009 201 HRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEE 280 (379)
Q Consensus 201 HRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~ 280 (379)
|||||+|||+++||||||||+|+|+|.+++ ..++.|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 158 Hrv~r~s~~~~~~rr~ts~a~V~VlP~~~~-~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~e 236 (325)
T PRK05589 158 HRLVRISPFNANGKRQTSFASVEVLPELTD-DQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 (325)
T ss_pred EEEEEcCCCCCCCCeEeeeEEEEEecCcCc-cccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCc
Confidence 999999999999999999999999999743 3578999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcceeecCCCccccccccCccccCcccccCCCcHHH
Q 017009 281 RSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 360 (379)
Q Consensus 281 RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~ 360 (379)
|||++||+.|+++|++||++++.+++.++....|+.+..++||++||||||+||+||||||||++++||+.||+|+||+|
T Consensus 237 RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~p~~rVtDhR~g~~~~~l~~vl~G~Ld~~ 316 (325)
T PRK05589 237 RSQHSNKETAMKMLKSKLVELKERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLVKDHRTGVETSNVDSVMDGDIDNF 316 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCceeeECCCCceeeeeccCceecChHHhhCCCHHHH
Confidence 99999999999999999999999888888888888877889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 017009 361 IKSYLKYK 368 (379)
Q Consensus 361 i~~~~~~~ 368 (379)
|++++.|.
T Consensus 317 I~a~l~~~ 324 (325)
T PRK05589 317 ITQYLKGN 324 (325)
T ss_pred HHHHHhhc
Confidence 99999764
No 7
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=100.00 E-value=2.2e-102 Score=773.31 Aligned_cols=345 Identities=30% Similarity=0.489 Sum_probs=327.5
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei 105 (379)
+++.+..++.+|+..+++|+||+||++|++++++++.|+.+++.|+.++....++.++.+|+++ +|++|.+++.+++
T Consensus 8 ~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~---~D~e~~~~a~~e~ 84 (360)
T TIGR00019 8 KLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEE---SDPEMREMAKEEL 84 (360)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999864 4899999999999
Q ss_pred HHHHHHHHHHHHH----hcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEE
Q 017009 106 KELNKALDQFELT----QLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSA 181 (379)
Q Consensus 106 ~~l~~~l~~lel~----~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~ 181 (379)
..+...+++++.. +||++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.+|||+|
T Consensus 85 ~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa 164 (360)
T TIGR00019 85 EELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEV 164 (360)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEE
Confidence 9999999998843 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccC
Q 017009 182 VIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 261 (379)
Q Consensus 182 ~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 261 (379)
++.|+|++||++|++|+|||||||+|||+++||+|||||+|.|+|.+++ +++.|+++||+|+|+|||||||||||||+
T Consensus 165 ~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~ 242 (360)
T TIGR00019 165 IAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE--VEVDINPADLRIDTFRSSGAGGQHVNTTD 242 (360)
T ss_pred EEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCcCcee
Confidence 9999999999999999999999999999999999999999999998753 57899999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCcceeecCCCcccccc
Q 017009 262 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV 340 (379)
Q Consensus 262 saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~-~~~g~~IRtY~~~~~~~v~Dh 340 (379)
|||||+|+||||+|.||++|||++||+.||++|+++|+....+++.++..+.|..++. .+||++|||||| ||+|||||
T Consensus 243 SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~-~~~rV~Dh 321 (360)
T TIGR00019 243 SAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNF-PQNRVTDH 321 (360)
T ss_pred eeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEEC-CCCeeeee
Confidence 9999999999999999999999999999999999999999998888888888877776 479999999999 78999999
Q ss_pred ccCccccCcccccCCCcHHHHHHHHHHHHhchhccC
Q 017009 341 RTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 376 (379)
Q Consensus 341 R~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~~~~~~ 376 (379)
|||++++||++||+|+||+||++|+.+...++|..+
T Consensus 322 Rtg~~~~~l~~vl~G~Ld~~I~~~l~~~~~~~l~~~ 357 (360)
T TIGR00019 322 RINLTLYKLDEVLEGDLDELIEALIAEDQAQQLAAL 357 (360)
T ss_pred ccCCeEcChHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877654
No 8
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=100.00 E-value=6e-101 Score=763.36 Aligned_cols=346 Identities=32% Similarity=0.497 Sum_probs=328.0
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei 105 (379)
.++.++.++.+|+..+++|+||+||+++++++++++.|+++++.|+.+.....++.++.+|+.+ ++|++|.+++.+++
T Consensus 7 ~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~--e~D~~~~~~~~~e~ 84 (359)
T PRK00591 7 KLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEE--ESDPEMREMAKEEL 84 (359)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999999999864 45899999999999
Q ss_pred HHHHHHHHHHH--HH--hcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEE
Q 017009 106 KELNKALDQFE--LT--QLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSA 181 (379)
Q Consensus 106 ~~l~~~l~~le--l~--~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~ 181 (379)
..+...+++++ +. +||++|+|.++|+|+|+||+||+||++||++|++||++||+++||++++++..+++.+||++|
T Consensus 85 ~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa 164 (359)
T PRK00591 85 KELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEV 164 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEE
Confidence 99999999887 34 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccC
Q 017009 182 VIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 261 (379)
Q Consensus 182 ~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 261 (379)
++.|+|++||++|++|+|||||||+|||++++|+|||||+|+|+|.+++ +++.|+++||+|+|+|||||||||||||+
T Consensus 165 ~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~--~~~~i~~~dl~~~~~RssG~GGQ~VNkt~ 242 (359)
T PRK00591 165 IAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEE--VEVEINPKDLRIDTFRSSGAGGQHVNTTD 242 (359)
T ss_pred EEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCc--cccccCcccEEEEEEECCCCCCCCcccee
Confidence 9999999999999999999999999999999999999999999998754 58899999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccCCcceeecCCCcccccc
Q 017009 262 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYKLVKDV 340 (379)
Q Consensus 262 saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~-~~g~~IRtY~~~~~~~v~Dh 340 (379)
|||||+|+||||+|.|+++|||++||+.|+++|+++|+..+.+++.++....|..++.. +||++||||||+| +|||||
T Consensus 243 saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~~-~~V~Dh 321 (359)
T PRK00591 243 SAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFPQ-GRVTDH 321 (359)
T ss_pred eeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC-Ceeeee
Confidence 99999999999999999999999999999999999999999999999988888777764 7999999999954 789999
Q ss_pred ccCccccCcccccCCCcHHHHHHHHHHHHhchhccC
Q 017009 341 RTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 376 (379)
Q Consensus 341 R~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~~~~~~ 376 (379)
|||++++||++||+|+||+||++|+.+...++|..+
T Consensus 322 Rtg~~~~~l~~vl~G~Ld~fI~~~l~~~~~~~l~~~ 357 (359)
T PRK00591 322 RINLTLYKLDEVMEGDLDELIDALIAEDQAEKLAAL 357 (359)
T ss_pred ccCCEEcChHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988887654
No 9
>PRK08787 peptide chain release factor 2; Provisional
Probab=100.00 E-value=1.4e-99 Score=738.12 Aligned_cols=311 Identities=40% Similarity=0.669 Sum_probs=294.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHH
Q 017009 63 VKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTD 142 (379)
Q Consensus 63 L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~E 142 (379)
|+..++.|..+...++|+.++++|+.+ +.|++|.+++.+++..++..++++++..||+||+|.++|+|||+||+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~--~~d~e~~~~~~~e~~~l~~~~~~le~~~lL~~~~D~~~a~leI~aG~GG~E 79 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAES--EQDEDTALAVIADLDKYQAHVEKLEFQRMFSGQMDGANAFVDIQAGAGGTE 79 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcEEEEECCCCcHH
Confidence 678899999999999999999999876 459999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceeccccee
Q 017009 143 AQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGA 222 (379)
Q Consensus 143 a~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V 222 (379)
|++||++||+||++||+++||++++++..+++.+|||+|++.|+|++||++|++|+|||||||+|||+++||||||||+|
T Consensus 80 a~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfasV 159 (313)
T PRK08787 80 AQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSV 159 (313)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHH
Q 017009 223 EVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIA 302 (379)
Q Consensus 223 ~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 302 (379)
.|+|.+++ .+++.|+++||+|+|+|||||||||||||+|||||+|+||||+|.||++|||++||+.|+++|+++|++++
T Consensus 160 ~V~P~~~~-~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~~ 238 (313)
T PRK08787 160 FVSPEVDD-NIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELE 238 (313)
T ss_pred EEecCcCc-ccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999743 46889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccccccCCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHHHHhchhccCC
Q 017009 303 EEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASD 377 (379)
Q Consensus 303 ~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~~~~~~~ 377 (379)
.+++.++....++.+..+.||+|||||||+| +||||||||++++|+++||+|+||+||++|+.+....--+-+|
T Consensus 239 ~e~~~~~~~~~~~~k~~i~~g~qIRtY~f~~-~~V~DhRtg~~~~~l~~vldG~ld~fI~a~l~~~~~~~~~~~~ 312 (313)
T PRK08787 239 VQKRNAEKDALEATKSDIGWGSQIRNYVLDQ-SRIKDLRTGIERSDTQKVLDGDLDEFVEASLKAGLAAGSKRLD 312 (313)
T ss_pred HHHHHHHHHHHhhhhhhCcccccccceeCCC-CcceeeccCceEcChhHhhCCChHHHHHHHHHHHHhccccccC
Confidence 9999888888887777788999999999987 5799999999999999999999999999999986554333333
No 10
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-88 Score=669.01 Aligned_cols=327 Identities=40% Similarity=0.642 Sum_probs=288.3
Q ss_pred HHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH----HH
Q 017009 35 AELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKEL----NK 110 (379)
Q Consensus 35 ~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l----~~ 110 (379)
...+..+.+.++|+|+. ++...++.|.+....++.+.. ++.|... .+|++|.+++.+++..+ +.
T Consensus 51 ~~~~~~~~~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~----lk~l~~~-----~e~e~~~~~a~~E~~~~~~~i~~ 118 (386)
T KOG2726|consen 51 KVQEAASNDSDLWDDPA---ELDEVLNALSDRMKLVRELKS----LKSLIKE-----GEDEDMDELAEEEAEEISKEIER 118 (386)
T ss_pred hhHHHhhchhhhhhhhH---HHHHHHHHHHHHHHHHHHhhh----HHHHHhh-----cccHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999986 334344444443333333332 3333332 24777777777776555 45
Q ss_pred HHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccch
Q 017009 111 ALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYA 190 (379)
Q Consensus 111 ~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~a 190 (379)
.+.+|++.+||++|+|.++|+|||+||+||+||++|+.+|++||.+||+.+||++++++..+++.+||++|++.|+|.+|
T Consensus 119 ~~~~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~a 198 (386)
T KOG2726|consen 119 SLHELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESA 198 (386)
T ss_pred HHHHHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccch
Confidence 55667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecC
Q 017009 191 YGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIP 270 (379)
Q Consensus 191 y~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~P 270 (379)
|++|++|.|||||||+|+|+++||+||||++|+|+|.+..+++++.||++|++|+++|||||||||||||+|||||+|+|
T Consensus 199 yg~l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiP 278 (386)
T KOG2726|consen 199 YGYLKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVDVEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIP 278 (386)
T ss_pred hheeeccCcccceeecCCcccccccccccceEEEeccCCCCccceecCchheeEEecccCCCCcccccccccceEEEeec
Confidence 99999999999999999999999999999999999998656689999999999999999999999999999999999999
Q ss_pred CeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCcceeecCCCccccccccCccccCc
Q 017009 271 TGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDVRTGHETSDI 349 (379)
Q Consensus 271 tgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~-~~~g~~IRtY~~~~~~~v~DhR~~~~~~~~ 349 (379)
|||+|+||++||||+||+.|+.+|+++|+.+...+...+....|+.+++ ..|+++||||||+| .||||||++++.+++
T Consensus 279 TGIvv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q-~rv~D~r~~~~~~d~ 357 (386)
T KOG2726|consen 279 TGIVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQ-DRVTDHRIGLESHDL 357 (386)
T ss_pred CceEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCc-cchhhhhhcccccch
Confidence 9999999999999999999999999999999999999999999999988 49999999999965 559999999999999
Q ss_pred ccccCCCcHHHHHHHHHHHHhchhc
Q 017009 350 VSVMDGELEPFIKSYLKYKYSMSLS 374 (379)
Q Consensus 350 ~~vm~G~ld~~i~~~~~~~~~~~~~ 374 (379)
.+||+|+||+||++++.+.....+.
T Consensus 358 ~~~l~G~Ld~li~~~~~~~~~~~~~ 382 (386)
T KOG2726|consen 358 ESFLDGNLDELIEALLSLRREEDLA 382 (386)
T ss_pred HHHHhccHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999887765544
No 11
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-81 Score=587.40 Aligned_cols=238 Identities=52% Similarity=0.879 Sum_probs=233.0
Q ss_pred cEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCC
Q 017009 130 AVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPF 209 (379)
Q Consensus 130 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~ 209 (379)
|+|+|+||+||+||||||.|||+||++||+++||++++++..+|+.+|+|||+|.|+|++|||+|+.|.|||||+|+|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHH
Q 017009 210 NAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIK 289 (379)
Q Consensus 210 ~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~ 289 (379)
++.|+|||||++|.|+|.++ .+++++|+++||+|+|+|||||||||||||+|||||||+||||+|.||.+|||++|++.
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~-~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~ 159 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELD-ISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKAL 159 (239)
T ss_pred CcCcccccceeeeeecCCCC-cccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHH
Confidence 99999999999999999986 57899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHHH
Q 017009 290 ALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYK 368 (379)
Q Consensus 290 A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~ 368 (379)
||..|+.+|++.+++.+.++.++.++.+..++||++||+|+|+||+.|+||||+++..|.+.||+|++|.||++++.+.
T Consensus 160 a~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i~wg~qirsyv~~p~~~vKd~Rt~~E~~~~~~v~dg~~~~~~~~~l~~~ 238 (239)
T COG1186 160 ARKMLKGKLYILAQEKRSQEKNRERALKKLIGWGNQIRSYVLDPYQPTKDLRTGVERRNKSKVLDGDKDGFIKAYLKWD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCCccccccccccceeeccHHHhhhhhHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998763
No 12
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=1.4e-67 Score=487.46 Aligned_cols=197 Identities=26% Similarity=0.365 Sum_probs=188.3
Q ss_pred cEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCC-CCeeEEEEEEeccchhhcccccccceeEEeeCC
Q 017009 130 AVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEE-AGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSP 208 (379)
Q Consensus 130 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~-~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~ 208 (379)
.+|||+||+||+||++||++||+||++||+++||++++++.++++. +|||+|+|.|+|++||++|+.|.|+|+|++.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 3899999999999999999999999999999999999999999987 469999999999999999999999999999999
Q ss_pred CCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHH
Q 017009 209 FNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKI 288 (379)
Q Consensus 209 ~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~ 288 (379)
++++++||||||+|.|+|. +++|+++||+++|+|||||||||||||+|||||+|+||||+|.||++|||++||+
T Consensus 81 ~r~~~~R~ts~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 154 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSA------SEEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKR 154 (200)
T ss_pred CCCCCCeeEEEEEEEEecC------ccccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHH
Confidence 9999999999999999983 3468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcceeecC
Q 017009 289 KALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFH 332 (379)
Q Consensus 289 ~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~~ 332 (379)
.|+++|+++|++++.+++.++.+..|..+...+||++||||+++
T Consensus 155 ~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~~~~Rg~~iRty~~~ 198 (200)
T TIGR03072 155 LATLLLAVRLADLQQEQAAALRAERRTAHHQIERGNPVRVFKGE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeeCC
Confidence 99999999999999888888888888888888999999999994
No 13
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=100.00 E-value=4e-67 Score=484.50 Aligned_cols=196 Identities=26% Similarity=0.320 Sum_probs=187.9
Q ss_pred cEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCC-CCeeEEEEEEeccchhhcccccccceeEEeeCC
Q 017009 130 AVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEE-AGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSP 208 (379)
Q Consensus 130 ~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~-~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~ 208 (379)
++|||+||+||+||++||++||+||.+||+.+||++++++.++++. +|||+|+|.|+|++||++|+.|.|+|+|++.||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 6999999999999999999999999999999999999999999987 559999999999999999999999999999999
Q ss_pred CCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHH
Q 017009 209 FNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKI 288 (379)
Q Consensus 209 ~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~ 288 (379)
++++++||||||+|.|+|. ++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++|||++||+
T Consensus 82 ~~~~~~R~~s~~~V~v~~~------~~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~ 155 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSA------DEEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKR 155 (200)
T ss_pred CCCCCCceEEEEEEEEeCC------cCccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHH
Confidence 9999999999999999974 3478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCcceeec
Q 017009 289 KALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVF 331 (379)
Q Consensus 289 ~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY~~ 331 (379)
.|+++|+++|++++.+++.++.+..+..+...+||++||||..
T Consensus 156 ~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 156 LARLLIAWKLEQQQQEQSAALKSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCceEeeec
Confidence 9999999999999998888888888888888899999999965
No 14
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis []. At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X ....
Probab=100.00 E-value=4.1e-36 Score=255.86 Aligned_cols=109 Identities=50% Similarity=0.775 Sum_probs=99.9
Q ss_pred CCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017009 232 SMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIK 311 (379)
Q Consensus 232 ~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~ 311 (379)
..++.||++||+++|+|||||||||||||+|+|+|+|+||||+|.|+++|||++|++.|+++|+++|..+..++......
T Consensus 4 ~~~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~ 83 (113)
T PF00472_consen 4 EKEIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTR 83 (113)
T ss_dssp SSSSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999988666666666
Q ss_pred HHhcCccc-ccccCCcceeecCCCccccccc
Q 017009 312 QIRGDAVK-AEWGQQIRNYVFHPYKLVKDVR 341 (379)
Q Consensus 312 ~~r~~~~~-~~~g~~IRtY~~~~~~~v~DhR 341 (379)
..++.+.. ..|+++||+|+| |+.+|||||
T Consensus 84 ~~~~~~~~~~~~~~~iR~y~~-~~~~vk~~R 113 (113)
T PF00472_consen 84 EIRKSQVKRLERKKKIRTYNF-PRSRVKDHR 113 (113)
T ss_dssp TTTTTSCCCSSTTSEEEEEET-TTTEEEETT
T ss_pred HHHHHHHhHHhhhcceecccC-ChhhcccCC
Confidence 67777776 699999999999 999999998
No 15
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=99.97 E-value=3.6e-31 Score=226.08 Aligned_cols=106 Identities=43% Similarity=0.689 Sum_probs=98.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEE
Q 017009 92 STDAGLLEEAASIIKELNKALDQFELT----QLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRV 167 (379)
Q Consensus 92 ~~D~el~eea~~ei~~l~~~l~~lel~----~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~v 167 (379)
++|++|++++.+++..+...++.++.. ++|++|+|.++|+|||+||+||+||++||.+|++||++||+++||++++
T Consensus 6 ~~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~~~ 85 (115)
T PF03462_consen 6 EEDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKVEV 85 (115)
T ss_dssp CT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 579999999999999999999998755 7778999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCeeEEEEEEeccchhhccccc
Q 017009 168 VEKSLGEEAGIKSAVIEVEGRYAYGYLSGE 197 (379)
Q Consensus 168 i~~~~~~~~G~k~~~~~i~G~~ay~~lk~E 197 (379)
++.++++.+|+|+|++.|+|++||++||+|
T Consensus 86 l~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 86 LDYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred EecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 999999999999999999999999999997
No 16
>PRK09256 hypothetical protein; Provisional
Probab=99.88 E-value=1.6e-22 Score=177.94 Aligned_cols=69 Identities=46% Similarity=0.653 Sum_probs=63.8
Q ss_pred cccCCCCCeeeeEeeecCCCCccccccCceEEEEe------cC-----------------Ce-eEEEecCcccHHHHHHH
Q 017009 234 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH------IP-----------------TG-VTVRCTEERSQLANKIK 289 (379)
Q Consensus 234 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h------~P-----------------tg-i~v~~~~~RSq~~Nk~~ 289 (379)
++.||.+|++++|+|||||||||||||+|+|+|+| +| +| |+|+|+++|||++|++.
T Consensus 7 ~~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~ 86 (138)
T PRK09256 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNRED 86 (138)
T ss_pred cCccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHH
Confidence 56899999999999999999999999999999995 77 35 89999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017009 290 ALSRLKAKLLVIA 302 (379)
Q Consensus 290 A~~~L~~~L~~~~ 302 (379)
|+++|.++|....
T Consensus 87 al~kL~~~i~~~~ 99 (138)
T PRK09256 87 ALERLVALIREAL 99 (138)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998643
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.5e-16 Score=137.83 Aligned_cols=69 Identities=39% Similarity=0.586 Sum_probs=62.0
Q ss_pred cccCCCCCeeeeEeeecCCCCccccccCceEEEE-------ecC------------------CeeEEEecCcccHHHHHH
Q 017009 234 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT-------HIP------------------TGVTVRCTEERSQLANKI 288 (379)
Q Consensus 234 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~-------h~P------------------tgi~v~~~~~RSq~~Nk~ 288 (379)
.-.||...+.+.|+||||||||||||++|+|.|+ ||| ..|++.++.+|||+.|.+
T Consensus 34 ~g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~Nia 113 (172)
T KOG3429|consen 34 KGKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIA 113 (172)
T ss_pred CCCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHH
Confidence 4568899999999999999999999999999997 566 138999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 017009 289 KALSRLKAKLLVIA 302 (379)
Q Consensus 289 ~A~~~L~~~L~~~~ 302 (379)
.|+++|++.|.+.+
T Consensus 114 DcleKlr~~I~~~~ 127 (172)
T KOG3429|consen 114 DCLEKLRDIIRAAE 127 (172)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
No 18
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=82.72 E-value=7.6 Score=42.39 Aligned_cols=43 Identities=30% Similarity=0.447 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccH--HHHHHHHHHHHhHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNR--AEAQETLQALTDVKDKIN 68 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~--~~a~~~~kel~~L~~~v~ 68 (379)
.++.+++++++|+.++++|+++.|. ++...+.+++..++..++
T Consensus 571 ~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 615 (638)
T PRK10636 571 EMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLE 615 (638)
T ss_pred HHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999998764 478888888888876544
No 19
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=73.17 E-value=6.9 Score=42.56 Aligned_cols=43 Identities=28% Similarity=0.523 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHH-HHHHHHHHHHhHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRA-EAQETLQALTDVKDKIN 68 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~-~a~~~~kel~~L~~~v~ 68 (379)
.++.++.++++|+.++++|+++.|+. +++++.+++..++..++
T Consensus 576 ~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (635)
T PRK11147 576 LLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELE 619 (635)
T ss_pred HHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999999999998866 88889988888876543
No 20
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=72.48 E-value=34 Score=37.09 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH
Q 017009 4 FYNLRKDVEAASDRVEEIRASA----GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN 68 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~ 68 (379)
..+++..+++...+|......+ +++..++++++|+.. =..+|...++..+++..|+..+.
T Consensus 166 ~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-----~ik~p~~i~~~~~e~d~lk~e~~ 229 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-----DIKNPLELQKIKEEFDKLKKEGK 229 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666666 899999999999873 24677766666666666655543
No 21
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.12 E-value=95 Score=35.84 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=37.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHH----HHHHHHHHHHHHHHHHH
Q 017009 58 QALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEE----AASIIKELNKALDQFEL 117 (379)
Q Consensus 58 kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~ee----a~~ei~~l~~~l~~lel 117 (379)
+.....++..+.=+.++..+.|+.+.+||+.- |.||.++ ++.+++.+.+++++|+.
T Consensus 287 raR~e~keaqe~ke~~k~emad~ad~iEmaTl----dKEmAEERaesLQ~eve~lkEr~delet 346 (1243)
T KOG0971|consen 287 RARKEAKEAQEAKERYKEEMADTADAIEMATL----DKEMAEERAESLQQEVEALKERVDELET 346 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555667777888888888743 6666665 55677788888888874
No 22
>PRK11546 zraP zinc resistance protein; Provisional
Probab=60.98 E-value=71 Score=28.73 Aligned_cols=60 Identities=7% Similarity=0.093 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH
Q 017009 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN 68 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~ 68 (379)
|-+..++.+...+..-...+ -+.+.++..||...++.|.. |+++.+++.+|+++|...+.
T Consensus 47 EQQa~~q~I~~~f~~~t~~L-RqqL~aKr~ELnALl~~~~p--D~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSAL-RQQLVSKRYEYNALLTANPP--DSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHHH
Confidence 44555666655554322222 36777888999999998865 99999999999999877544
No 23
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=55.63 E-value=34 Score=25.97 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=27.3
Q ss_pred HHHHHhhCCceEEEEeeccCCCCCeeEEEEEEecc
Q 017009 154 YVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGR 188 (379)
Q Consensus 154 Y~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~ 188 (379)
....+.++||.++-+...+++..|+..+++.+.|+
T Consensus 9 i~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~ 43 (63)
T PF13710_consen 9 ITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD 43 (63)
T ss_dssp HHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-
T ss_pred HHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC
Confidence 34455669999999999998889999999999993
No 24
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=50.55 E-value=2.1e+02 Score=29.49 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhccC-HH--HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017009 7 LRKDVEAASDRVEEIRASAG-LQ--QLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTI 83 (379)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-l~--~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l 83 (379)
+..+++.+..++..+...+. .+ .-..+|.++.++ ..++..+......|..++..+.+++++
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske----------------~a~l~~iv~~~~~~~~~~~~l~~a~~~ 68 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKE----------------YAELEPIVEKYREYKKAQEDLEDAKEM 68 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777666655442 21 223444444333 455555666666666666666655555
Q ss_pred HH---------hhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 017009 84 VK---------LTEEMDSTDAGLLEEAASIIKELNKALDQFEL 117 (379)
Q Consensus 84 ~e---------L~~e~~~~D~el~eea~~ei~~l~~~l~~lel 117 (379)
+. |+++ -..+++..+..|++.+..|-+
T Consensus 69 l~~~~D~em~ema~~-------Ei~~~~~~~~~le~~L~~lLl 104 (363)
T COG0216 69 LAEEKDPEMREMAEE-------EIKELEAKIEELEEELKILLL 104 (363)
T ss_pred HhccCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 44 4332 245678888888888877653
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=48.52 E-value=2.3e+02 Score=31.81 Aligned_cols=17 Identities=47% Similarity=0.618 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhcC
Q 017009 27 LQQLEKELAELEMKAAD 43 (379)
Q Consensus 27 l~~~~~~~~~le~~~~d 43 (379)
+..+..++.+++.++..
T Consensus 565 ~~~~~~~~~~~~~~l~~ 581 (880)
T PRK03918 565 LDELEEELAELLKELEE 581 (880)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444445555555443
No 26
>PRK10869 recombination and repair protein; Provisional
Probab=47.37 E-value=3.4e+02 Score=29.39 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=15.4
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHH
Q 017009 48 DNRAEAQETLQALTDVKDKINLLT 71 (379)
Q Consensus 48 ~D~~~a~~~~kel~~L~~~v~~~~ 71 (379)
-||.+...+..++..+...-..|-
T Consensus 293 ~dp~~l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 293 LDPNRLAELEQRLSKQISLARKHH 316 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhC
Confidence 388777777766666655555554
No 27
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=46.77 E-value=3.2e+02 Score=27.51 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHH
Q 017009 9 KDVEAASDRVEEI-RASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDF 73 (379)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l 73 (379)
..+..+.+..... ..-.++..++..+..|+.......+ +|..-.++.++++.|...+......
T Consensus 90 ~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L--~~e~E~~lvq~I~~L~k~le~~~k~ 153 (294)
T COG1340 90 KEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVL--TPEEERELVQKIKELRKELEDAKKA 153 (294)
T ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333 3556789999999999987766555 5666667777777776666555543
No 28
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.72 E-value=2.1e+02 Score=31.36 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=40.2
Q ss_pred ccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017009 24 SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDD 79 (379)
Q Consensus 24 ~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d 79 (379)
+..++.+++.-.+|+++++ +.=-+|.+-..+-+..++|++.+..|..+...+..
T Consensus 234 ~~~ie~l~~~n~~l~e~i~--e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMIN--EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3468888888888888887 44446666666667788899999999988776554
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.76 E-value=98 Score=37.65 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=18.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHh
Q 017009 135 TAGAGGTDAQDWADMLLRMYVRWGE 159 (379)
Q Consensus 135 ~aG~GG~Ea~~~a~~L~~mY~~~a~ 159 (379)
...+-+.+|..||..+++-|..|-.
T Consensus 486 ~Gkv~~~~a~~~~~~~~~~~~~~~~ 510 (1486)
T PRK04863 486 AGEVSRSEAWDVARELLRRLREQRH 510 (1486)
T ss_pred cCCcCHHHHHHHHHHHHHHhHHHHH
Confidence 3345578899999999998876543
No 30
>smart00150 SPEC Spectrin repeats.
Probab=45.10 E-value=1.4e+02 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDF 73 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l 73 (379)
+..+..-+.+.+..+.++++=+|+..++...+++..+...+.....-
T Consensus 7 ~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~ 53 (101)
T smart00150 7 ADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEER 53 (101)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445556666666777666689999999999998888877655543
No 31
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.08 E-value=45 Score=25.56 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhcCCccccc
Q 017009 27 LQQLEKELAELEMKAADSSFWDN 49 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D 49 (379)
++.++..+..++..+++|+|-..
T Consensus 13 l~kl~~~i~~~~~kL~n~~F~~k 35 (66)
T PF10458_consen 13 LEKLEKEIERLEKKLSNENFVEK 35 (66)
T ss_dssp HHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccc
Confidence 67788889999999999999654
No 32
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=43.91 E-value=67 Score=25.71 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=29.9
Q ss_pred HHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccc
Q 017009 154 YVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRY 189 (379)
Q Consensus 154 Y~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ 189 (379)
..+.+.++||.++-+...+++..|+...++.+.|+.
T Consensus 19 i~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~ 54 (76)
T PRK06737 19 ISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE 54 (76)
T ss_pred HHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH
Confidence 345556799999999999988899999999988854
No 33
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=43.35 E-value=64 Score=25.77 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=29.9
Q ss_pred HHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchh
Q 017009 155 VRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAY 191 (379)
Q Consensus 155 ~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay 191 (379)
.+.+.++||.++-++..+++..++..+++.+.++.+.
T Consensus 21 ~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i 57 (76)
T PRK11152 21 LRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPI 57 (76)
T ss_pred HHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchH
Confidence 3445569999999999998888999999999765544
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=39.34 E-value=3e+02 Score=30.81 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=11.5
Q ss_pred ccccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017009 46 FWDNRAEAQETLQALTDVKDKINLLTDFKT 75 (379)
Q Consensus 46 fW~D~~~a~~~~kel~~L~~~v~~~~~l~~ 75 (379)
+|.-......+..++..+......+..+..
T Consensus 261 i~~l~~el~~l~~~l~~l~~~~~~~~~l~~ 290 (880)
T PRK03918 261 IRELEERIEELKKEIEELEEKVKELKELKE 290 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444433333
No 35
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.22 E-value=2.7e+02 Score=28.50 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCC
Q 017009 93 TDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAG 137 (379)
Q Consensus 93 ~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG 137 (379)
++++..+++++++.+....+.+.| ..|+.+ ++.+|.+.=|
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmE--a~LPkk---NGlyL~liLG 104 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDME--AFLPKK---NGLYLRLILG 104 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHH--hhCCCC---CCcccceecc
Confidence 356667777777777777777666 444433 5666666555
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.03 E-value=1.5e+02 Score=27.62 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 017009 33 ELAELEMKA 41 (379)
Q Consensus 33 ~~~~le~~~ 41 (379)
+++.|..++
T Consensus 118 ~~~~l~~el 126 (188)
T PF03962_consen 118 ELKELKKEL 126 (188)
T ss_pred HHHHHHHHH
Confidence 333333333
No 37
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=37.13 E-value=2.7e+02 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017009 96 GLLEEAASIIKELNKALDQFELTQLLSGPYDK 127 (379)
Q Consensus 96 el~eea~~ei~~l~~~l~~lel~~ll~~~~D~ 127 (379)
+++-.+..+-..+.+.++.|+|..|+.|.+|-
T Consensus 138 e~M~rL~aD~~~l~aeV~~f~ITdl~ddDfdv 169 (228)
T PF06721_consen 138 ERMCRLKADKNKLGAEVDDFAITDLMDDDFDV 169 (228)
T ss_pred chHHHHHccHHHHHhHHHhhcchhhhcCchhH
Confidence 34445556667788888888888888777663
No 38
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=36.12 E-value=3.1e+02 Score=24.30 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=25.8
Q ss_pred ccccHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017009 46 FWDNRAEAQET---LQALTDVKDKINLLTDFKTKMDDAVTIVKLTEE 89 (379)
Q Consensus 46 fW~D~~~a~~~---~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e 89 (379)
.|-|+.+..+- ..+...++.-|+..+.....++|+..=++|+.+
T Consensus 15 t~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~De 61 (131)
T KOG1760|consen 15 TFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDE 61 (131)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCc
Confidence 36676555444 444555555566666555666666666677654
No 39
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=36.04 E-value=2.8e+02 Score=25.52 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHHHHHhcCCccc--ccHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 017009 24 SAGLQQLEKELAELEMKAADSSFW--DNRAEA-QETLQALTDVKDKINLLTDFKTKMDDAVTIVK 85 (379)
Q Consensus 24 ~~~l~~~~~~~~~le~~~~dp~fW--~D~~~a-~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~e 85 (379)
...|+.+++|+.+||..+-.++-- .+|... ..+.+-...|.........++..++.+.++..
T Consensus 4 ~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~ 68 (174)
T PF07426_consen 4 MSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNK 68 (174)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 345788999999999998432111 123221 22222233333334444444444455554444
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.44 E-value=3.8e+02 Score=28.99 Aligned_cols=36 Identities=14% Similarity=0.412 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHh
Q 017009 6 NLRKDVEAASDRVEE---IRASAGLQQLEKELAELEMKA 41 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~le~~~ 41 (379)
++...|+.+.+++.. .-+.++++..+.....++.++
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~I 291 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERI 291 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 345555555555543 123445666555555554443
No 41
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=34.92 E-value=3.4e+02 Score=26.00 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 017009 4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAAD 43 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~d 43 (379)
+.+++..|-.+..++..+.++..++.++..+.++|..+.+
T Consensus 11 ~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~ 50 (207)
T PF05546_consen 11 MDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEA 50 (207)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 4577888888899999999999999999999999998865
No 42
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=34.09 E-value=31 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCCceecccceeEeecCCCCCCCcccCCCCCee
Q 017009 210 NAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLE 243 (379)
Q Consensus 210 ~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~ 243 (379)
...|||+++.|+|.|.|-. -.+.|+-.|+.
T Consensus 152 ~~~g~rK~a~A~V~v~~Gt----Gk~~vNg~~~~ 181 (275)
T KOG1697|consen 152 IAVGRRKCARATVKVQPGT----GKFDVNGRDLD 181 (275)
T ss_pred eeccceecceeEEEEecCc----eeEEecchhHH
Confidence 3458899999999997742 24555555554
No 43
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=33.15 E-value=1.4e+02 Score=25.07 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhcC--CcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAAD--SSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMD 78 (379)
Q Consensus 27 l~~~~~~~~~le~~~~d--p~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~ 78 (379)
++.+..++.+|+.+|.. |+-|.-..-+ +|..|+..++..--.|.+.+..+.
T Consensus 31 v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~ 83 (101)
T PF07303_consen 31 VDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCE 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHH
Confidence 44555566666666533 2222111222 444666666533333444433333
No 44
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=32.63 E-value=3.6e+02 Score=24.26 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHH-HHhHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQA-LTDVKDKINLLTD 72 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~ke-l~~L~~~v~~~~~ 72 (379)
|-++...|..|...+.+++ .|++....++.. -..+...++.|-.
T Consensus 3 LYel~~~~~~l~~~~e~~~--~d~e~~~dtLe~i~~~~~~K~~~~~~ 47 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGD--LDEEAIADTLESIEDEIEEKADNIAK 47 (162)
T ss_pred HHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666565555 344444444333 2333333443333
No 45
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.55 E-value=6.9e+02 Score=27.44 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~ 72 (379)
+..+..-..+|...+.+-+| ||.+..++..++..|......|..
T Consensus 275 ~~~l~ea~~el~~~~~~le~--Dp~~L~~ve~Rl~~L~~l~RKY~~ 318 (557)
T COG0497 275 LYELEEASEELRAYLDELEF--DPNRLEEVEERLFALKSLARKYGV 318 (557)
T ss_pred HHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444455566667777777 888888888887777777666654
No 46
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=32.35 E-value=1.2e+02 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHhhCCceEEEEeeccCCCCCeeEEEEEEe-ccc
Q 017009 156 RWGEKQRYKTRVVEKSLGEEAGIKSAVIEVE-GRY 189 (379)
Q Consensus 156 ~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~-G~~ 189 (379)
..+.++||.++-+...+++..|+...++.+. |+.
T Consensus 21 ~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~ 55 (84)
T PRK13562 21 SAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD 55 (84)
T ss_pred HHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH
Confidence 3445699999999999999999999999997 754
No 47
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.66 E-value=5.7e+02 Score=26.71 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=10.7
Q ss_pred cCCC---cHHHHHHHHHHHH
Q 017009 353 MDGE---LEPFIKSYLKYKY 369 (379)
Q Consensus 353 m~G~---ld~~i~~~~~~~~ 369 (379)
|.|- ++-+|-|++...+
T Consensus 381 ln~t~~a~~R~l~ailE~~q 400 (425)
T PRK05431 381 LNGSGLAVGRTLVAILENYQ 400 (425)
T ss_pred eCCchhhHHHHHHHHHHHCC
Confidence 4554 5667777776544
No 48
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=31.23 E-value=2.8e+02 Score=30.36 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 017009 96 GLLEEAASIIKELNKALDQFEL 117 (379)
Q Consensus 96 el~eea~~ei~~l~~~l~~lel 117 (379)
+...-+...+.+|+.+++.+|.
T Consensus 122 d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 122 DTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566677777777776654
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.96 E-value=5.5e+02 Score=25.64 Aligned_cols=111 Identities=17% Similarity=0.169 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKIN----LLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAA 102 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~----~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~ 102 (379)
...+..++..|......++ --|+.....+-.++..+...+. .+..++..+..+..-++-+ .+-..++.
T Consensus 186 ~~~L~~e~~~Lk~~~~e~~-~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~-------~~~k~~l~ 257 (325)
T PF08317_consen 186 KAELEEELENLKQLVEEIE-SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL-------EEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3444455555554444433 2367777777777777777777 4444444444443333221 11233344
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEe
Q 017009 103 SIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVE 169 (379)
Q Consensus 103 ~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~ 169 (379)
.+|.++++.+++ ..|-+.. =+..|-..|..+....||++.-++
T Consensus 258 ~eI~e~~~~~~~----------------------~r~~t~~--Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 258 AEIAEAEKIREE----------------------CRGWTRS--EVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred HHHHHHHHHHHH----------------------hcCCCHH--HHHHHHHHHHHHHHHHCcEEEEEe
Confidence 444444444432 1122111 145677778888889999887665
No 50
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.90 E-value=2e+02 Score=33.38 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAV 81 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~ 81 (379)
++.++++++.++.++++|+|-.... ...+.++...+.+....+..+++.+..+.
T Consensus 938 l~kl~~ei~~~~~kL~N~~F~~kAp-~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 938 LAKLQKSLESYLKKISIPNYEDKVP-EDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888899999999999975431 22345555555555555555554444443
No 51
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.96 E-value=1.4e+02 Score=28.77 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=16.6
Q ss_pred cCCcccccHHHHHHHHHHHHh
Q 017009 42 ADSSFWDNRAEAQETLQALTD 62 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel~~ 62 (379)
-||-+|-||..+..+.+.+.+
T Consensus 93 ~dPH~Wldp~n~~~~a~~I~~ 113 (264)
T cd01020 93 DNPHLWYDPETMSKVANALAD 113 (264)
T ss_pred CCCceecCHhHHHHHHHHHHH
Confidence 499999999999887755543
No 52
>PF08399 VWA_N: VWA N-terminal; InterPro: IPR013608 This domain is found at the N terminus of proteins containing von Willebrand factor type A (VWA, IPR002035 from INTERPRO) and Cache (IPR004010 from INTERPRO) domains. It has been found in vertebrates, Drosophila melanogaster (Fruit fly) and Caenorhabditis elegans but has not yet been identified in other eukaryotes. It is probably involved in the function of some voltage-dependent calcium channel subunits [].
Probab=29.90 E-value=28 Score=30.40 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=18.4
Q ss_pred ecCCCCccccccCceEEEEecCCeeE
Q 017009 249 AGGKGGQNVNKVETAVRITHIPTGVT 274 (379)
Q Consensus 249 ssGpGGQ~VNkt~saVrl~h~Ptgi~ 274 (379)
.+.=+++.||.+.|+| |+||+|-
T Consensus 51 d~~F~~i~Vn~~~S~V---hiPt~Vy 73 (123)
T PF08399_consen 51 DSHFYNIPVNTSQSAV---HIPTNVY 73 (123)
T ss_pred CcCcCCcccccccceE---EccCCcc
Confidence 4455677999999987 9999874
No 53
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.67 E-value=1.5e+02 Score=29.85 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017009 33 ELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTK 76 (379)
Q Consensus 33 ~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~ 76 (379)
.+..|...+.+|+| +|+.+.+.++-...|-.+|.....|-..
T Consensus 171 ~~~~l~~~~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 171 TIKKLKKYLKNPDF--NPEKVRKASKAAGSLCKWVRAMVKYYEV 212 (344)
T ss_dssp HHHHHHCTTTSTTS--SHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 46677788999999 8999999888888888887777666543
No 54
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=29.57 E-value=73 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCceEEEEeeccCCCCC-eeEEEEEEeccc
Q 017009 152 RMYVRWGEKQRYKTRVVEKSLGEEAG-IKSAVIEVEGRY 189 (379)
Q Consensus 152 ~mY~~~a~~~~~~~~vi~~~~~~~~G-~k~~~~~i~G~~ 189 (379)
+.|..||...||.+.+-.......+| +..+++...-.+
T Consensus 1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G 39 (91)
T PF03101_consen 1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGG 39 (91)
T ss_pred CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcc
Confidence 36999999999999887655554455 788888776544
No 55
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.33 E-value=6.3e+02 Score=25.82 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q 017009 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKA 41 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~ 41 (379)
.+-..+..|..++..| ..-.|+.+.+|+..|..++
T Consensus 243 ~l~~~l~~L~~~lslL-~~~~Ld~i~~rl~~L~~~~ 277 (388)
T PF04912_consen 243 PLLPALNELERQLSLL-DPAKLDSIERRLKSLLSEL 277 (388)
T ss_pred hHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 3445667777777766 3456888888887777666
No 56
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=28.60 E-value=2.7e+02 Score=24.52 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHH----HhccCHHHHHHHHHHHHHHh-cCCcccccH-----HHHHHHHHHHHhHHHHHHHHHHH
Q 017009 4 FYNLRKDVEAASDRVEEI----RASAGLQQLEKELAELEMKA-ADSSFWDNR-----AEAQETLQALTDVKDKINLLTDF 73 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~le~~~-~dp~fW~D~-----~~a~~~~kel~~L~~~v~~~~~l 73 (379)
|..+++.|..+..+-... ...-++..++.++.+++... .|..|-+.- ..+|.+.. ..++.+..|
T Consensus 16 LisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~------~LLd~C~~l 89 (134)
T PF10303_consen 16 LISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLN------GLLDDCFDL 89 (134)
T ss_pred HHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHH------HHHHHHHHH
Confidence 445555555555443311 11356889999999999999 888886543 44454442 223333333
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 017009 74 KTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELT 118 (379)
Q Consensus 74 ~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~ 118 (379)
-..+..-... ...-|+.+. .+.+.+.+++..++.|.+.
T Consensus 90 i~dl~~~~~~------~~~~~~~l~-~iY~~L~~ik~~LE~L~lT 127 (134)
T PF10303_consen 90 IEDLLERKGE------EIEVDPSLQ-PIYDQLIDIKNTLENLLLT 127 (134)
T ss_pred HHHHHHhccc------cccccHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 3222211110 002355554 5778888888888877643
No 57
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.38 E-value=3.7e+02 Score=29.04 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 017009 27 LQQLEKELAELEMKAADS 44 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp 44 (379)
-|+|+.++..|-.++.+|
T Consensus 413 EE~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHHHHHHHHhcCh
Confidence 355566666666666665
No 58
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=28.15 E-value=1.6e+02 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhCCc-eEEEEeeccCCCCCeeEEEEEE
Q 017009 137 GAGGTDAQDWADMLLRMYVRWGEKQRY-KTRVVEKSLGEEAGIKSAVIEV 185 (379)
Q Consensus 137 G~GG~Ea~~~a~~L~~mY~~~a~~~~~-~~~vi~~~~~~~~G~k~~~~~i 185 (379)
|.. .++..+...++..|..+...-|+ .+++.....++.+++.+.+.-|
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~ 166 (173)
T PF00587_consen 118 CTP-EQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDI 166 (173)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEE
T ss_pred eCC-cccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccH
Confidence 443 88999999999999999999999 9999998888877765555444
No 59
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.95 E-value=2.5e+02 Score=26.89 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 017009 101 AASIIKELNKALDQF 115 (379)
Q Consensus 101 a~~ei~~l~~~l~~l 115 (379)
++.+|+.++.++..|
T Consensus 174 v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 174 VRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 60
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=27.83 E-value=3.1e+02 Score=21.82 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHH
Q 017009 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKI 67 (379)
Q Consensus 28 ~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v 67 (379)
..+.....+|...+..|.+ |+.+...+.+++..+...+
T Consensus 66 ~~~~~~r~~l~~ll~~~~~--D~~~i~a~~~~~~~~~~~l 103 (125)
T PF13801_consen 66 QELRAARQELRALLAAPPP--DEAAIEALLEEIREAQAEL 103 (125)
T ss_dssp HHHHHHHHHHHHHHCCSSS---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHHH
Confidence 5667778888889999988 8888888888777775443
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.75 E-value=6.3e+02 Score=27.36 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhcC---CcccccHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAAD---SSFWDNRAEAQETLQA 59 (379)
Q Consensus 27 l~~~~~~~~~le~~~~d---p~fW~D~~~a~~~~ke 59 (379)
++.++.++..+|...+. -....|+.+|++++..
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~ 198 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTENGDYLEAREILEK 198 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666666666665443 2234577788776643
No 62
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=26.70 E-value=98 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.415 Sum_probs=29.1
Q ss_pred EeeecCCCCccccccCceEEEEecCCeeEEEecCcc
Q 017009 246 FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEER 281 (379)
Q Consensus 246 ~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~R 281 (379)
..-..|.++..+-..+|.+||.|..||..+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~ 158 (190)
T PF02815_consen 123 EKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVK 158 (190)
T ss_dssp EEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEE
T ss_pred ecccCCccCCcEEecccEEEEEECCcCEEEecCCcc
Confidence 334457788899888999999999999888777654
No 63
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=26.39 E-value=34 Score=28.66 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=18.1
Q ss_pred EeeecCCCCccccccCceE------EEEecC-----------CeeEEEecCcccHHHHHHHHHHHHHHH
Q 017009 246 FSRAGGKGGQNVNKVETAV------RITHIP-----------TGVTVRCTEERSQLANKIKALSRLKAK 297 (379)
Q Consensus 246 ~~RssGpGGQ~VNkt~saV------rl~h~P-----------tgi~v~~~~~RSq~~Nk~~A~~~L~~~ 297 (379)
+.=.+|++|.|+|..-..- -+-..| ..++|+..+-|.|..--..|.+||..-
T Consensus 27 sl~~s~a~~lh~~~~Pi~gQ~~~~~~~e~~P~~~~~~~QPLc~~~~VT~eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 27 SLLQSLASALHTSSQPITGQTSSKDALEKNPGVGLNPPQPLCKQFVVTEEDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp ------------------------------------------T-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhccccCCCCCCcCCccchhhhccCcccccCCCcccccCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888877763211 122233 246788888899999998999888754
No 64
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.15 E-value=4.5e+02 Score=27.89 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHH--HHhcCC-CCCCCCCcEEEecCC
Q 017009 101 AASIIKELNKALDQFE--LTQLLS-GPYDKEGAVISITAG 137 (379)
Q Consensus 101 a~~ei~~l~~~l~~le--l~~ll~-~~~D~~~~~leI~aG 137 (379)
+...+.++++++..++ +..+.. +..+...+.|.|.+.
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~v~v~l~~~ 189 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLTGKSQRSHTVLVRLEAP 189 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEecc
Confidence 3344455555555543 334443 233344566777653
No 65
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.88 E-value=2.5e+02 Score=27.42 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=16.2
Q ss_pred cCCcccccHHHHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQALT 61 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel~ 61 (379)
.||-+|-||..+..+.+.+.
T Consensus 115 ~dPH~Wldp~~~~~~a~~Ia 134 (287)
T cd01137 115 PDPHAWMSPKNAIIYVKNIA 134 (287)
T ss_pred CCCCcCcCHHHHHHHHHHHH
Confidence 39999999999988775543
No 66
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=25.75 E-value=2.5e+02 Score=30.64 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=14.6
Q ss_pred cCCcccccHHHHHHHHHHHHhHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQALTDVKDKINLLT 71 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel~~L~~~v~~~~ 71 (379)
.||+|-.+..+..-+-..|+-|+..|..|+
T Consensus 565 ~dp~y~eeK~RceYLhsKLaHIK~lI~efD 594 (604)
T KOG4796|consen 565 KDPNYMEEKQRCEYLHSKLAHIKTLIGEFD 594 (604)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444444444444444444444444
No 67
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=25.30 E-value=1.9e+02 Score=29.81 Aligned_cols=108 Identities=13% Similarity=0.207 Sum_probs=60.7
Q ss_pred CcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCC
Q 017009 129 GAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSP 208 (379)
Q Consensus 129 ~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~ 208 (379)
--++.|.+|.||.=|.-|-. .|+...|- =+-..|..+| +|.+...- +.++.+++++.+++.|.
T Consensus 44 ~~rv~~kgG~GG~G~ssf~~-------~~~~~~g~----PdGGdGG~GG--~V~~~a~~----~~~~~l~~~~s~~~a~~ 106 (366)
T KOG1489|consen 44 KRRVRIKGGSGGSGASSFFR-------GYRRPRGG----PDGGDGGNGG--HVYFVAKP----GAFKQLSHVGSLIQAPN 106 (366)
T ss_pred eeeEEeeccCCCCccchhhh-------hcccccCC----CCCCCCCCCc--eEEEEeCc----ccccccccCCceEEccC
Confidence 35789999999988875522 22222211 0111222333 67777662 34566778888888776
Q ss_pred CC--CCCceecccceeEeecCCCCCCCc--------ccCCCCCeeeeEeeecCCCC
Q 017009 209 FN--AKGLRQTSFSGAEVMPLLPEESMD--------VQIPEEDLEISFSRAGGKGG 254 (379)
Q Consensus 209 ~~--~~~rrhts~a~V~v~P~~~~~~~~--------~~i~~~dl~i~~~RssGpGG 254 (379)
-+ +..-+|-+.+...+++.+....+. .++...+-++-..|+ |.||
T Consensus 107 Ge~~~s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arG-G~GG 161 (366)
T KOG1489|consen 107 GENGKSKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARG-GEGG 161 (366)
T ss_pred CCcCccccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEeec-CCCC
Confidence 33 334457788877666643221111 123445556666775 4666
No 68
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=25.28 E-value=1.1e+02 Score=25.11 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEeccchhhcccc
Q 017009 148 DMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSG 196 (379)
Q Consensus 148 ~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~ 196 (379)
-.++.--.+--+.+||.+.-+..++.-.+|.-++.+.|.|+-+...|..
T Consensus 14 pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~lL~~ 62 (86)
T COG3978 14 PETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDLLTS 62 (86)
T ss_pred hHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCChHHHHH
Confidence 3444455566778999999999888777888899999999988776653
No 69
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.98 E-value=2.1e+02 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.400 Sum_probs=15.5
Q ss_pred cCCcccccHHHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQAL 60 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel 60 (379)
.||-+|-||..+..+.+.+
T Consensus 106 ~dPH~Wldp~~~~~~a~~I 124 (203)
T cd01145 106 GNPHVWLDPNNAPALAKAL 124 (203)
T ss_pred CCcCeecCHHHHHHHHHHH
Confidence 4999999999998776544
No 70
>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]
Probab=23.91 E-value=28 Score=32.84 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHHHHhhCCceEEEEeeccCCCCC-eeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCC
Q 017009 151 LRMYVRWGEKQRYKTRVVEKSLGEEAG-IKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLP 229 (379)
Q Consensus 151 ~~mY~~~a~~~~~~~~vi~~~~~~~~G-~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~ 229 (379)
++-|..-+..+.-.+..|.. .+..- .=+|.+.+.-+.+.++|-+|-|+|-+ |+--++..|...|+ .-+|++.
T Consensus 76 l~eYaltsAl~DsRF~PIsr--~ELp~L~CsvslL~nFE~i~d~lDWevG~HGI-rieF~~e~g~krsA----TyLPeVa 148 (210)
T KOG3274|consen 76 LREYALTSALKDSRFPPISR--EELPSLQCSVSLLTNFEDIFDYLDWEVGVHGI-RIEFTNETGTKRSA----TYLPEVA 148 (210)
T ss_pred HHHHHHHHHhhcccCCCCCh--hhcCceEEEEEeeccchhcccccceeeccceE-EEEEEcCCCcEeee----eecccch
Confidence 45566666666656655543 23333 34688888889999999999999976 45444445554443 2377765
Q ss_pred CCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEe
Q 017009 230 EESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH 268 (379)
Q Consensus 230 ~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h 268 (379)
.+. ..+..+--=...|=+|=+|---+-....+++|-
T Consensus 149 ~EQ---gWd~~eTidsLirKaGY~g~It~~~r~~I~ltR 184 (210)
T KOG3274|consen 149 AEQ---GWDQIETIDSLIRKAGYKGPITEELRKSIKLTR 184 (210)
T ss_pred hhc---CCcHHHHHHHHHHhcCCCCccCHHHHhheeeeE
Confidence 421 222222122356777777754445555666653
No 71
>PLN02943 aminoacyl-tRNA ligase
Probab=23.85 E-value=2.6e+02 Score=32.45 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDD 79 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d 79 (379)
++.++++++.++.++++|+|-.... ...+-++...+.+....+..+++.+..
T Consensus 898 l~klekei~~~~~kLsN~~F~~KAP-~evv~~e~~kl~~~~~~l~~~~~~l~~ 949 (958)
T PLN02943 898 LSKMQTEYDALAARLSSPKFVEKAP-EDVVRGVREKAAEAEEKIKLTKNRLAF 949 (958)
T ss_pred HHHHHHHHHHHHHHhCCchhhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999999999965431 122445555555444444444444433
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.43 E-value=4.9e+02 Score=22.58 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhhhhcCCCChhHHHHHHHHHHHHHHHH
Q 017009 56 TLQALTDVKDKINLLTDFKTKMDDA----VTIVKLTEEMDSTDAGLLEEAASIIKELNKAL 112 (379)
Q Consensus 56 ~~kel~~L~~~v~~~~~l~~~~~d~----~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l 112 (379)
++.+...++.....+..++..+.++ ..+++|+.|. .|-.++++.++.+++...
T Consensus 56 l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK----~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 56 LMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK----SEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666655554 4677777542 344556666666665543
No 73
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=22.98 E-value=5.9e+02 Score=23.28 Aligned_cols=54 Identities=7% Similarity=0.201 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDA 80 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~ 80 (379)
-.+.+.+++..|...++.-+++......+. .+....|...+..+.+|++.+.+.
T Consensus 71 laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~-~~~~~~Lyq~L~~hqe~erRL~~m 124 (173)
T PF07445_consen 71 LAEKLVAQIEALQRELATQSLRKKESKPSS-RKPIHQLYQRLAQHQEYERRLLAM 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHhccCccCCccccc-cCchhHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999988777755444433 555666666666677776665543
No 74
>PLN02320 seryl-tRNA synthetase
Probab=22.68 E-value=7.7e+02 Score=26.65 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHH
Q 017009 21 IRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLT 71 (379)
Q Consensus 21 ~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~ 71 (379)
+.+.+|+..++...+.+.+.+..-.+--|.+....+-.+...+...++.++
T Consensus 63 ~~~mlD~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr 113 (502)
T PLN02320 63 WKAAIDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLR 113 (502)
T ss_pred cccccCHHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777776666542233444444444444444443333
No 75
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=21.91 E-value=1.9e+02 Score=24.29 Aligned_cols=35 Identities=3% Similarity=-0.088 Sum_probs=28.9
Q ss_pred HHhhCCceEEEEeeccCCCCCeeEEEEEEeccchh
Q 017009 157 WGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAY 191 (379)
Q Consensus 157 ~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay 191 (379)
.+.++||.++-+...+++..|+...++.+.++...
T Consensus 28 lFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i 62 (96)
T PRK08178 28 LFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRL 62 (96)
T ss_pred HHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHH
Confidence 34459999999999999999999999999876543
No 76
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.68 E-value=2.5e+02 Score=26.87 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=16.3
Q ss_pred cCCcccccHHHHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQALT 61 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel~ 61 (379)
.||-+|-||..+..+.+.++
T Consensus 110 ~dPH~Wldp~~~~~~a~~I~ 129 (266)
T cd01018 110 YDPHIWLSPANAKIMAENIY 129 (266)
T ss_pred CCCccCcCHHHHHHHHHHHH
Confidence 48999999999988775554
No 77
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.59 E-value=7.7e+02 Score=24.16 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCC-CCCCCcEEEecCCCChHHHH
Q 017009 98 LEEAASIIKELNKALDQFE-LTQLLSGP-YDKEGAVISITAGAGGTDAQ 144 (379)
Q Consensus 98 ~eea~~ei~~l~~~l~~le-l~~ll~~~-~D~~~~~leI~aG~GG~Ea~ 144 (379)
.++.++.++.++.....|+ ....|.|+ +|-..-|=|+.||.--.|-.
T Consensus 165 ~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 165 YEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHH
Confidence 3455566666666666664 34444444 34456666777775433333
No 78
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.59 E-value=7.1e+02 Score=23.73 Aligned_cols=68 Identities=13% Similarity=0.274 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH
Q 017009 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL-LTDFKTKMDD 79 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~-~~~l~~~~~d 79 (379)
+.++.+....++|..+ -.++-..++..|..|..+..+ -.++|..+...+..++++-+. |.+|+.+++.
T Consensus 39 eaqeQF~sALe~f~sl-~~~~ggdLe~~Y~~ln~~ye~-----s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~ 107 (201)
T PF11172_consen 39 EAQEQFKSALEQFKSL-VNFDGGDLEDKYNALNDEYES-----SEDAAEEVSDRIDAVEDVADALFDEWEQELDQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHh-hCCCCCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666644 344556677778777776655 245666777777777776543 4556555543
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.48 E-value=6.3e+02 Score=31.03 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCccc
Q 017009 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFW 47 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW 47 (379)
+..++++....++..+...+ ..+..++..|+.+...-.-|
T Consensus 297 eA~kkLe~tE~nL~rI~diL--~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 297 TSRRQLAAEQYRLVEMAREL--AELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443 66666666666666554433
No 80
>PRK10869 recombination and repair protein; Provisional
Probab=20.97 E-value=9e+02 Score=26.14 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=7.7
Q ss_pred CCCeeEEEEEEe
Q 017009 175 EAGIKSAVIEVE 186 (379)
Q Consensus 175 ~~G~k~~~~~i~ 186 (379)
..|+..|.|.|+
T Consensus 406 ~~G~d~veF~~~ 417 (553)
T PRK10869 406 ADGADRIEFRVT 417 (553)
T ss_pred CCCceEEEEEEe
Confidence 356666776665
No 81
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.78 E-value=1e+03 Score=28.27 Aligned_cols=108 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHH--HHHHHHHHH
Q 017009 3 DFYNLRKDVEAASDRVEEIRASAG-----LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK--INLLTDFKT 75 (379)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~--v~~~~~l~~ 75 (379)
+.-..+.+.++...++......++ +..++.+++.|+.+... +.+++.+..++..+... +..|..+..
T Consensus 166 Gv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~------a~~y~~l~~e~~~~~~~~~~~~~~~~~~ 239 (1163)
T COG1196 166 GVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEK------AERYQELKAELRELELALLLAKLKELRK 239 (1163)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 017009 76 KMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFE 116 (379)
Q Consensus 76 ~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~le 116 (379)
.++.+..-+..+.+.-+.-..-+.++..++..++..+..+.
T Consensus 240 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~ 280 (1163)
T COG1196 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 82
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.51 E-value=9.1e+02 Score=27.53 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHH-HHHHhccCHHHHHHHHHHHHHHhcCCcc---ccc---HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017009 6 NLRKDVEAASDRV-EEIRASAGLQQLEKELAELEMKAADSSF---WDN---RAEAQETLQALTDVKDKINLLTDFKTKMD 78 (379)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~le~~~~dp~f---W~D---~~~a~~~~kel~~L~~~v~~~~~l~~~~~ 78 (379)
.+.+.|+.|...| ..+........++.++..|..+++.-+- --+ .+++.++..|++.=-..+-.|-.++.+++
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 3556666666555 3455666777888888888866666321 111 23455555555544333444555666666
Q ss_pred HHHHHHH--hhhhcCCCChhHHHHHHHHHHH------HHHHHHH
Q 017009 79 DAVTIVK--LTEEMDSTDAGLLEEAASIIKE------LNKALDQ 114 (379)
Q Consensus 79 d~~~l~e--L~~e~~~~D~el~eea~~ei~~------l~~~l~~ 114 (379)
-+.+... .+.+..+.-.+|.+++.+-+.+ +.++++.
T Consensus 539 ~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea 582 (762)
T PLN03229 539 MLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEA 582 (762)
T ss_pred HHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHH
Confidence 5554443 1111111234555556655555 5555553
No 83
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=20.35 E-value=1.1e+02 Score=23.08 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHhcCC
Q 017009 8 RKDVEAASDRVEEIRASA--GLQQLEKELAELEMKAADS 44 (379)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~le~~~~dp 44 (379)
..-++.+..+|..+...+ +++.+-.|+.+||+-+++.
T Consensus 9 ~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 9 QNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445666667776655433 6888888888888877763
No 84
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=20.30 E-value=4.5e+02 Score=26.07 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCcccccHHHHHHHHHHH
Q 017009 43 DSSFWDNRAEAQETLQAL 60 (379)
Q Consensus 43 dp~fW~D~~~a~~~~kel 60 (379)
||-+|-||..++.+.+.+
T Consensus 144 dPHiWldp~~~~~~a~~I 161 (311)
T PRK09545 144 NMHIWLSPEIARATAVAI 161 (311)
T ss_pred CCcccCCHHHHHHHHHHH
Confidence 899999999998876554
No 85
>PLN02381 valyl-tRNA synthetase
Probab=20.27 E-value=4.1e+02 Score=31.31 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDD 79 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d 79 (379)
++.++++++.++.++++|+|-..... ..+.++...+.+....+..++..+..
T Consensus 1006 l~klekei~~~~~kLsN~~F~~KAP~-~vve~e~~kl~~~~~~l~~l~~~l~~ 1057 (1066)
T PLN02381 1006 MDEIQKQQEKLEKKMNASGYKEKVPA-NIQEEDARKLTKLLQELEFFEKESKR 1057 (1066)
T ss_pred HHHHHHHHHHHHhhhcCCchhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999654321 12344444444444444444444433
No 86
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.05 E-value=4.7e+02 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 017009 50 RAEAQETLQALTDVKDKINLL 70 (379)
Q Consensus 50 ~~~a~~~~kel~~L~~~v~~~ 70 (379)
|+-++.+.+-+..++..++.+
T Consensus 26 P~~aRtlGk~i~k~Rr~~~d~ 46 (169)
T PRK01919 26 PRVARTAGALFGRAQRYINDV 46 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
Done!