Query 017009
Match_columns 379
No_of_seqs 299 out of 1685
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gqe_A Release factor 2, RF2; 100.0 1E-115 4E-120 867.1 39.8 363 1-367 1-363 (365)
2 1zbt_A RF-1, peptide chain rel 100.0 1E-110 5E-115 831.2 31.0 349 24-376 16-369 (371)
3 3d5a_X RF1, peptide chain rele 100.0 8E-110 3E-114 821.9 36.0 344 26-377 4-352 (354)
4 2ihr_1 Peptide chain release f 100.0 2E-111 6E-116 836.7 23.1 350 11-369 3-353 (365)
5 2b3t_B RF-1, peptide chain rel 100.0 7E-110 2E-114 824.2 19.2 345 25-377 7-357 (360)
6 1rq0_A RF-1, peptide chain rel 100.0 5E-104 2E-108 777.3 25.2 328 31-376 2-332 (342)
7 2rsm_A Probable peptide chain 100.0 8.2E-39 2.8E-43 269.2 9.9 99 201-303 11-109 (115)
8 1j26_A Immature colon carcinom 99.9 2.5E-26 8.6E-31 194.1 9.9 71 231-301 11-106 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 3.8E-26 1.3E-30 191.9 9.0 69 234-302 7-99 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 1.2E-24 4.1E-29 190.5 7.2 69 234-302 7-99 (140)
11 2lw1_A ABC transporter ATP-bin 96.2 0.042 1.4E-06 43.8 10.5 43 27-69 31-74 (89)
12 3lay_A Zinc resistance-associa 73.5 18 0.00061 32.2 9.3 61 6-69 71-131 (175)
13 4fla_A Regulation of nuclear P 68.6 35 0.0012 29.6 9.8 86 29-114 43-132 (152)
14 3err_A Fusion protein of micro 49.4 81 0.0028 32.5 10.2 70 33-115 136-206 (536)
15 3na7_A HP0958; flagellar bioge 48.1 1.6E+02 0.0056 26.8 11.5 44 26-72 68-111 (256)
16 1naf_A ADP-ribosylation factor 47.3 1.2E+02 0.0041 26.3 9.6 121 25-160 13-144 (158)
17 1xaw_A Occludin; coiled-coil, 44.1 61 0.0021 27.9 6.9 37 27-65 68-104 (140)
18 2dfs_A Myosin-5A; myosin-V, in 43.0 72 0.0024 35.8 9.2 12 104-115 1031-1042(1080)
19 2ctk_A Vigilin; K homology typ 41.4 33 0.0011 27.4 4.7 47 251-302 33-86 (104)
20 3viq_B Mating-type switching p 39.7 1.4E+02 0.0047 23.5 8.1 34 2-44 1-34 (85)
21 3oja_B Anopheles plasmodium-re 39.0 2.4E+02 0.0083 28.2 11.9 18 98-115 560-577 (597)
22 3fb2_A Spectrin alpha chain, b 34.0 2.3E+02 0.0078 24.4 9.7 46 27-72 22-67 (218)
23 1ses_A Seryl-tRNA synthetase; 30.0 4.1E+02 0.014 26.2 12.1 18 353-370 377-397 (421)
24 3r6n_A Desmoplakin; spectrin r 28.5 1.8E+02 0.006 29.3 8.6 14 102-115 248-261 (450)
25 3hh8_A Metal ABC transporter s 28.4 2.4E+02 0.0081 26.3 9.1 19 42-60 121-139 (294)
26 2ctf_A Vigilin; K homology typ 27.7 56 0.0019 26.0 3.9 48 250-301 42-93 (102)
27 2dq0_A Seryl-tRNA synthetase; 27.3 2.6E+02 0.0087 28.1 9.6 13 357-369 410-422 (455)
28 3ghg_A Fibrinogen alpha chain; 27.1 1.9E+02 0.0064 30.1 8.4 20 103-122 176-195 (562)
29 1oxz_A ADP-ribosylation factor 26.8 3.4E+02 0.011 24.1 10.0 124 23-161 27-161 (186)
30 2dq3_A Seryl-tRNA synthetase; 26.1 4.1E+02 0.014 26.2 10.8 18 352-369 381-401 (425)
31 3ktd_A Prephenate dehydrogenas 25.5 1.7E+02 0.0059 28.0 7.6 29 129-167 312-340 (341)
32 2a3d_A Protein (de novo three- 25.4 1.1E+02 0.0037 22.5 4.7 67 3-70 3-70 (73)
33 3pe9_A Fibronectin(III)-like m 24.5 1.5E+02 0.0052 23.4 5.9 49 176-226 30-88 (98)
34 2axy_A Poly(RC)-binding protei 24.3 31 0.0011 25.6 1.6 46 251-299 21-71 (73)
35 2a26_A Calcyclin-binding prote 23.8 1.9E+02 0.0067 20.3 6.5 42 71-117 7-48 (50)
36 3ujp_A Mn transporter subunit; 23.6 2.2E+02 0.0075 26.9 7.9 19 42-60 128-146 (307)
37 1wle_A Seryl-tRNA synthetase; 22.9 6.1E+02 0.021 25.7 12.1 50 23-72 39-91 (501)
38 1u5p_A Spectrin alpha chain, b 22.7 3.5E+02 0.012 22.9 10.8 47 27-73 12-58 (216)
39 2ctl_A Vigilin; K homology typ 21.7 75 0.0026 24.9 3.5 47 250-299 32-86 (97)
40 1xvl_A Mn transporter, MNTC pr 21.7 2.5E+02 0.0087 26.5 8.0 19 42-60 142-160 (321)
41 1lq7_A Alpha3W; three helix bu 21.6 1.3E+02 0.0044 21.8 4.3 38 6-43 6-43 (67)
42 1lq7_A Alpha3W; three helix bu 21.2 1.7E+02 0.0057 21.2 4.9 38 4-41 27-64 (67)
43 1ses_A Seryl-tRNA synthetase; 21.1 3.5E+02 0.012 26.7 9.1 19 1-19 1-19 (421)
44 2ko1_A CTR148A, GTP pyrophosph 21.0 2.4E+02 0.0081 20.3 7.4 56 157-214 25-86 (88)
45 1i84_S Smooth muscle myosin he 20.5 3.6E+02 0.012 30.2 10.0 16 6-21 861-876 (1184)
46 3lbx_A Spectrin alpha chain, e 20.3 3.8E+02 0.013 22.3 10.7 81 27-114 65-145 (161)
47 2pih_A Protein YMCA; regulate 20.3 3.9E+02 0.013 22.5 9.1 16 53-68 42-57 (151)
No 1
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=1.3e-115 Score=867.11 Aligned_cols=363 Identities=38% Similarity=0.681 Sum_probs=350.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017009 1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDA 80 (379)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~ 80 (379)
||++++++..++++..++..++.+++++.+..++++|+.++++|+||+||++|++++++++.|+++|+.|+.|++.++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~ 80 (365)
T 1gqe_A 1 MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV 80 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhh
Q 017009 81 VTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEK 160 (379)
Q Consensus 81 ~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~ 160 (379)
+++.+|+.+ +.|++|++++.+++..+++.++++|+..||+||+|.+||||||+||+||+||++||+|||+||.+||++
T Consensus 81 ~~~~el~~~--e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~ 158 (365)
T 1gqe_A 81 SGLLELAVE--ADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAES 158 (365)
T ss_dssp HHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 359999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeeccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCC
Q 017009 161 QRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEE 240 (379)
Q Consensus 161 ~~~~~~vi~~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~ 240 (379)
+||++++++.++|+.+|||+|+|.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ ++++.|+++
T Consensus 159 ~g~k~evl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~-~v~i~i~~~ 237 (365)
T 1gqe_A 159 RGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPA 237 (365)
T ss_dssp TTCEEEEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGG
T ss_pred CCCeEEEEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCc-ccccccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999853 578999999
Q ss_pred CeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 017009 241 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA 320 (379)
Q Consensus 241 dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~ 320 (379)
||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.++.|+.+..+
T Consensus 238 dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i 317 (365)
T 1gqe_A 238 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDI 317 (365)
T ss_dssp GEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCC
T ss_pred HceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899888888
Q ss_pred cccCCcceeecCCCccccccccCccccCcccccCCCcHHHHHHHHHH
Q 017009 321 EWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKY 367 (379)
Q Consensus 321 ~~g~~IRtY~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~ 367 (379)
.||++||||||+||+ |||||||++++|+++||+|+||+||++|+.|
T Consensus 318 ~~G~~IRtY~f~~~r-VkDhRt~~~~~~l~~vldGdld~~I~a~l~~ 363 (365)
T 1gqe_A 318 GWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 (365)
T ss_dssp CSCSEEEEEEGGGTE-EEETTTCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred CccCCeEeEECCCCe-eeccccCceECCHHHHhCCCHHHHHHHHHHh
Confidence 999999999998877 9999999999999999999999999999976
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=1.3e-110 Score=831.15 Aligned_cols=349 Identities=30% Similarity=0.437 Sum_probs=295.6
Q ss_pred ccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHH
Q 017009 24 SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAAS 103 (379)
Q Consensus 24 ~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ 103 (379)
+++++.+..++++|+.++++|+||+||++|++++++++.|+++++.|+.|++..+|+.++.+|+.+. +.|++|.+++.+
T Consensus 16 ~~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~-e~D~e~~~~a~~ 94 (371)
T 1zbt_A 16 YDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDA-SGDPELEEMAKE 94 (371)
T ss_dssp HHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999998641 348999999999
Q ss_pred HHHHHHHHHHHHH--HHhcC--CCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCee
Q 017009 104 IIKELNKALDQFE--LTQLL--SGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIK 179 (379)
Q Consensus 104 ei~~l~~~l~~le--l~~ll--~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k 179 (379)
++..+++.++++| +..|| +||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++|+.+|||
T Consensus 95 e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG~k 174 (371)
T 1zbt_A 95 ELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLK 174 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCce
Confidence 9999999999988 45555 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccc
Q 017009 180 SAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNK 259 (379)
Q Consensus 180 ~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNk 259 (379)
+|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+++|+||||||||||||
T Consensus 175 sv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~e--v~i~I~~~dl~i~~~RssGpGGQ~VNk 252 (371)
T 1zbt_A 175 EVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEE--VEYEIDPKDLRVDIYHASGAGGQNVNK 252 (371)
T ss_dssp EEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCG--GGSCCCGGGEEEEEECC---------C
T ss_pred EEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccc--cccccCcCcEEEEEecCCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999854 788999999999999999999999999
Q ss_pred cCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCcceeecCCCcccc
Q 017009 260 VETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVK 338 (379)
Q Consensus 260 t~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~-~~~g~~IRtY~~~~~~~v~ 338 (379)
|+|||||+|+||||+|+||++|||++||+.||++|+++|+..+.+++.++.++.|+.+++ .+||++||||||+| +|||
T Consensus 253 t~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf~q-~rVt 331 (371)
T 1zbt_A 253 VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQ-NRVT 331 (371)
T ss_dssp CCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTT-TEEE
T ss_pred cceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEECCC-CEee
Confidence 999999999999999999999999999999999999999999999988888888888776 47888999999955 8899
Q ss_pred ccccCccccCcccccCCCcHHHHHHHHHHHHhchhccC
Q 017009 339 DVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSAS 376 (379)
Q Consensus 339 DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~~~~~~ 376 (379)
|||||++++||++||+|+||+||++|+.+.+..+|.++
T Consensus 332 DhRtg~~~~~l~~VldGdLd~~I~a~l~~~~~~~l~~~ 369 (371)
T 1zbt_A 332 DHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEEL 369 (371)
T ss_dssp ETTTTEEESCHHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ecccCCeECChHHHhCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999888765
No 3
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=8.5e-110 Score=821.91 Aligned_cols=344 Identities=31% Similarity=0.499 Sum_probs=328.1
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII 105 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei 105 (379)
+++.+..++++|+.++++|+||+||++|++++++++.|+++++.|+.|++.++|+.++.+|+. |++|.+++.+++
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~-----D~e~~~~a~~e~ 78 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD-----DPELKEMAKAER 78 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999863 899999999999
Q ss_pred HHHHHHHHHHH--HH--hcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEE
Q 017009 106 KELNKALDQFE--LT--QLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSA 181 (379)
Q Consensus 106 ~~l~~~l~~le--l~--~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~ 181 (379)
..+++.+++++ +. +||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++|+.+|||+|
T Consensus 79 ~~l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v 158 (354)
T 3d5a_X 79 EALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKV 158 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEE
Confidence 99999999987 44 455999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccC
Q 017009 182 VIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 261 (379)
Q Consensus 182 ~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~ 261 (379)
++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+|+|+|||||||||||||+
T Consensus 159 ~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~--~~i~i~~~dl~i~~~RssG~GGQ~VNkt~ 236 (354)
T 3d5a_X 159 VFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEE--EDFALNMDEIRIDVMRASGPGGQGVNTTD 236 (354)
T ss_dssp EEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCC--CCCCCCGGGEEEEEECCCSCCHHHHHHCC
T ss_pred EEEEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcc--cccccCccceEEEeecCCCCCCccccccc
Confidence 9999999999999999999999999999999999999999999999854 68899999999999999999999999999
Q ss_pred ceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCcceeecCCCcccccc
Q 017009 262 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDV 340 (379)
Q Consensus 262 saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~-~~~g~~IRtY~~~~~~~v~Dh 340 (379)
|||||+|+||||+|+||++|||++||+.||++|+++|+..+.+++.++.++.|+.+++ .+||++||||||+| +|||||
T Consensus 237 SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q-~rVtDh 315 (354)
T 3d5a_X 237 SAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQ-SRVTDH 315 (354)
T ss_dssp CEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTT-TEEEET
T ss_pred ceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC-Ceeeec
Confidence 9999999999999999999999999999999999999999999999998999988777 47899999999955 889999
Q ss_pred ccCccccCcccccCCCcHHHHHHHHHHHHhchhccCC
Q 017009 341 RTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASD 377 (379)
Q Consensus 341 R~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~~~~~~~ 377 (379)
|||++++||++||+|+||+||++|+.+.+..+|.++.
T Consensus 316 R~~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~~ 352 (354)
T 3d5a_X 316 RIGFTTHDLEGVLSGHLTPILEALKRADQERQLAALA 352 (354)
T ss_dssp TTTEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCceeCChHHhhCCchHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988887653
No 4
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=1.8e-111 Score=836.67 Aligned_cols=350 Identities=40% Similarity=0.667 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhhh
Q 017009 11 VEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVK-LTEE 89 (379)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~e-L~~e 89 (379)
++.+..++..++.+++++.+..++++|+.++++|+||+||++|++++++++.|+++|+.|++|++.++|++++.+ |+.+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~e 82 (365)
T 2ihr_1 3 LERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAE 82 (365)
T ss_dssp ---CTTTHHHHTTSSSHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777888999999999999999999999999999999999999999999999999999999999999999999 8753
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEe
Q 017009 90 MDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVE 169 (379)
Q Consensus 90 ~~~~D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~ 169 (379)
+| +++.+++..+++.++++++..||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++
T Consensus 83 ---ed----~~a~~e~~~l~~~~~~le~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~ 155 (365)
T 2ihr_1 83 ---ER----EALKPELEEAAKKLDELYHQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVD 155 (365)
T ss_dssp ---TG----GGTGGGTHHHHHHHHHHHHHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ---cH----HHHHHHHHHHHHHHHHHHHHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 13 67889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCeeEEEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeee
Q 017009 170 KSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRA 249 (379)
Q Consensus 170 ~~~~~~~G~k~~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~Rs 249 (379)
.++++.+|||+|+|.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ .+++.|+++||+++|+||
T Consensus 156 ~~~~~~gG~ks~~~~I~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~-~~~i~i~~~dl~i~~~Rs 234 (365)
T 2ihr_1 156 LTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDE-EVEVVLKPEELRIDVMRA 234 (365)
T ss_dssp EEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCS-SSSCCCCGGGEEEEEECC
T ss_pred cCCCCCCCeEEEEEEEEccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCc-ccccccCccceEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999854 578899999999999999
Q ss_pred cCCCCccccccCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCccee
Q 017009 250 GGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNY 329 (379)
Q Consensus 250 sGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~g~~IRtY 329 (379)
|||||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.++.|+.+..+.||++||||
T Consensus 235 sG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~IRtY 314 (365)
T 2ihr_1 235 SGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPIEWGSQIRSY 314 (365)
T ss_dssp CCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCSCCCSCSEEE
T ss_pred CCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred ecCCCccccccccCccccCcccccCCCcHHHHHHHHHHHH
Q 017009 330 VFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKY 369 (379)
Q Consensus 330 ~~~~~~~v~DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~~ 369 (379)
||+| +||||||||++++||++||+|+||+||++|+.+..
T Consensus 315 nf~~-~rVtDhRtg~~~~~l~~VldGdld~~I~a~l~~~~ 353 (365)
T 2ihr_1 315 VLDK-NYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKA 353 (365)
T ss_dssp EGGG-TEEEETTTCCEESCHHHHTTTCCHHHHHHHHHHHH
T ss_pred ECCC-ccchhcccCceeCChHHHhCCcHHHHHHHHHHHHh
Confidence 9977 99999999999999999999999999999998764
No 5
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.7e-110 Score=824.18 Aligned_cols=345 Identities=30% Similarity=0.457 Sum_probs=285.9
Q ss_pred cCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 017009 25 AGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASI 104 (379)
Q Consensus 25 ~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~e 104 (379)
-+++.+..++++|+.++++|+||+||++|++++++++.|+++++.|+.|++.++|+.++.+|+ + |++|.+++.++
T Consensus 7 ~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~-e----D~e~~~~a~~e 81 (360)
T 2b3t_B 7 AKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMML-D----DPEMREMAQDE 81 (360)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999997 3 88999999999
Q ss_pred HHHHHHHHHHHHHH----hcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeE
Q 017009 105 IKELNKALDQFELT----QLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKS 180 (379)
Q Consensus 105 i~~l~~~l~~lel~----~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~ 180 (379)
+..+++.+++++.. +||+||+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++|+.+|||+
T Consensus 82 ~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~ 161 (360)
T 2b3t_B 82 LREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKE 161 (360)
T ss_dssp -------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCceE
Confidence 99999999999974 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccchhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCc-ccCCCCCeeeeEeeecCCCCccccc
Q 017009 181 AVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMD-VQIPEEDLEISFSRAGGKGGQNVNK 259 (379)
Q Consensus 181 ~~~~i~G~~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~-~~i~~~dl~i~~~RssGpGGQ~VNk 259 (379)
|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ ++ +.|+++||+++|+||||||||||||
T Consensus 162 ~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~--~e~i~i~~~dl~i~~~RssG~GGQ~VNk 239 (360)
T 2b3t_B 162 IIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPD--AELPDVNPADLRIDTFRSSGAGGQHVNT 239 (360)
T ss_dssp EEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCT--TTCCCCCSSSEEEEECCSSCCCTTTCCC
T ss_pred EEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCccc--ccccccChhheEEeeecCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999854 56 8899999999999999999999999
Q ss_pred cCceEEEEecCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccCCcceeecCCCcccc
Q 017009 260 VETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYKLVK 338 (379)
Q Consensus 260 t~saVrl~h~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~-~~g~~IRtY~~~~~~~v~ 338 (379)
|+|||||+|+||||+|+||++|||++||+.||++|+++|+....+++.++.++.|+.+++. +||++||||||+| +|||
T Consensus 240 t~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~~-~rVt 318 (360)
T 2b3t_B 240 TDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQ-GRVT 318 (360)
T ss_dssp SSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTT-TEEE
T ss_pred ccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEECCC-Ceee
Confidence 9999999999999999999999999999999999999999998888888888889887774 7889999999955 8899
Q ss_pred ccccCccccCcccccCCCcHHHHHHHHHHHHhchhccCC
Q 017009 339 DVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSASD 377 (379)
Q Consensus 339 DhR~~~~~~~~~~vm~G~ld~~i~~~~~~~~~~~~~~~~ 377 (379)
|||||++++||++||+|+||+||++|+.+.+..+|.++.
T Consensus 319 DhRt~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~~~ 357 (360)
T 2b3t_B 319 DHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALS 357 (360)
T ss_dssp EGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHCC---
T ss_pred ecccCcEECCHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999998887653
No 6
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=4.6e-104 Score=777.34 Aligned_cols=328 Identities=33% Similarity=0.511 Sum_probs=292.3
Q ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHH
Q 017009 31 EKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNK 110 (379)
Q Consensus 31 ~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~ 110 (379)
..++++|+.+|++|+| ||++|++++++++.|+++++.|+.|+ .++| +.+|+.+ +.|+ .+++..+++
T Consensus 2 ~~r~~el~~~~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~~---~~~l~~e--~~D~------~~e~~~l~~ 67 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDL--TPEQMKNYGMEYAKIEEIENITNRIK-ETQE---FIELLRE--EGEN------ELEIEKYEK 67 (342)
T ss_dssp TTTTTHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHTTTTT--TTTC------CSCHHHHHH
T ss_pred hHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH---HHHHHHh--cCCH------HHHHHHHHH
Confidence 3578999999999999 99999999999999999999999999 4444 4455543 2354 567788888
Q ss_pred HHHHHH--HHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEEEeeccCCCCCeeEEEEEEecc
Q 017009 111 ALDQFE--LTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGR 188 (379)
Q Consensus 111 ~l~~le--l~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~ 188 (379)
.+++++ +..||. |+|.+||||||+||+||+||++||+|||+||.+||+++||++++++.++++.+|||+|+|.|+|+
T Consensus 68 ~l~~le~~l~~lL~-p~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~ 146 (342)
T 1rq0_A 68 ELDQLYQELLFLLS-PEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGK 146 (342)
T ss_dssp HHHHHHHHHHHHHS-CSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEEST
T ss_pred HHHHHHHHHHHhcC-ccccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECc
Confidence 888887 777777 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcccccccceeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEe
Q 017009 189 YAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH 268 (379)
Q Consensus 189 ~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h 268 (379)
+||++||+|+|||||||||||+++||+|||||+|+|+|++++ +++.|+++||+++|+|||||||||||||+|||||+|
T Consensus 147 ~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~--~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~h 224 (342)
T 1rq0_A 147 NAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEE--KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITH 224 (342)
T ss_dssp THHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCG--GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEE
T ss_pred CHHHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccc--cccccChhHeEEEeecCCCCCCcccccccceEEEEE
Confidence 999999999999999999999999999999999999999854 788999999999999999999999999999999999
Q ss_pred cCCeeEEEecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccCCcceeecCCCccccccccCcccc
Q 017009 269 IPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-EWGQQIRNYVFHPYKLVKDVRTGHETS 347 (379)
Q Consensus 269 ~Ptgi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~-~~g~~IRtY~~~~~~~v~DhR~~~~~~ 347 (379)
+||||+|+||++|||++||+.||++|+++|+..+.+++.++.++.|+.+++. +||++||||||+| +||||||||++++
T Consensus 225 lPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf~~-~rVtDhRt~~~~~ 303 (342)
T 1rq0_A 225 LPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQ-NRVTDHRINYTSY 303 (342)
T ss_dssp TTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTT-TEEEETTTTEEES
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEECCC-CeeeecccCceeC
Confidence 9999999999999999999999999999999999988888878888877764 7899999999955 8899999999999
Q ss_pred CcccccCCCcHHHHHHHHHHHHhchhccC
Q 017009 348 DIVSVMDGELEPFIKSYLKYKYSMSLSAS 376 (379)
Q Consensus 348 ~~~~vm~G~ld~~i~~~~~~~~~~~~~~~ 376 (379)
||++||+|+||+||++|+.+.+..+|.++
T Consensus 304 ~l~~vldGdLd~~I~a~l~~~~~~~l~~~ 332 (342)
T 1rq0_A 304 RLQEILDGDLDEIISKLIEHDIENNLEEV 332 (342)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHTTTHHHH
T ss_pred CHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887654
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=8.2e-39 Score=269.21 Aligned_cols=99 Identities=27% Similarity=0.388 Sum_probs=94.3
Q ss_pred eeEEeeCCCCCCCceecccceeEeecCCCCCCCcccCCCCCeeeeEeeecCCCCccccccCceEEEEecCCeeEEEecCc
Q 017009 201 HRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEE 280 (379)
Q Consensus 201 HRv~Rvs~~~~~~rrhts~a~V~v~P~~~~~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h~Ptgi~v~~~~~ 280 (379)
|||||+|+|+++| |||++|+|+|+.++ ...++|+++||+++|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 11 ~rvqrvp~tes~g---ts~~~v~v~p~~d~-~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~ 86 (115)
T 2rsm_A 11 LRLQEKPALLFPG---MAASTVQVAGRKDY-PALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQT 86 (115)
T ss_dssp CCCCCCCCCCCCC---CCCCCCCCCSCCCC-CCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCS
T ss_pred eeEEecCcccCCc---cceEEEEeccccCC-CccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCC
Confidence 8999999999999 99999999999754 4578999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 017009 281 RSQLANKIKALSRLKAKLLVIAE 303 (379)
Q Consensus 281 RSq~~Nk~~A~~~L~~~L~~~~~ 303 (379)
|||++||+.||++|++||+++..
T Consensus 87 RSQ~~Nr~~A~~~L~~kL~e~~~ 109 (115)
T 2rsm_A 87 RSVDQNRKIARKVLQEKVDVFYN 109 (115)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.93 E-value=2.5e-26 Score=194.12 Aligned_cols=71 Identities=28% Similarity=0.519 Sum_probs=67.2
Q ss_pred CCCcccCCCCCeeeeEeeecCCCCccccccCceEEEE-ecCCe------------------------eEEEecCcccHHH
Q 017009 231 ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT-HIPTG------------------------VTVRCTEERSQLA 285 (379)
Q Consensus 231 ~~~~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~-h~Ptg------------------------i~v~~~~~RSq~~ 285 (379)
+.+++.||++||+++|+|||||||||||||+|||+|+ |+|+| |+|+||++|||++
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 3567899999999999999999999999999999997 99998 9999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017009 286 NKIKALSRLKAKLLVI 301 (379)
Q Consensus 286 Nk~~A~~~L~~~L~~~ 301 (379)
||+.|+++|+++|++.
T Consensus 91 Nr~~Al~rL~~~l~~a 106 (112)
T 1j26_A 91 NLAECLQKIRDMIAEA 106 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999764
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.93 E-value=3.8e-26 Score=191.91 Aligned_cols=69 Identities=36% Similarity=0.653 Sum_probs=65.5
Q ss_pred cccCCCCCeeeeEeeecCCCCccccccCceEEEEe------cC-----------------Ce-eEEEecCcccHHHHHHH
Q 017009 234 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH------IP-----------------TG-VTVRCTEERSQLANKIK 289 (379)
Q Consensus 234 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~h------~P-----------------tg-i~v~~~~~RSq~~Nk~~ 289 (379)
++.||++||+++|+|||||||||||||+|||+|+| +| +| |+|+||++|||++||+.
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 67899999999999999999999999999999999 99 88 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017009 290 ALSRLKAKLLVIA 302 (379)
Q Consensus 290 A~~~L~~~L~~~~ 302 (379)
|+++|+++|++..
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999997643
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.90 E-value=1.2e-24 Score=190.51 Aligned_cols=69 Identities=41% Similarity=0.599 Sum_probs=65.3
Q ss_pred cccCCCCCeeeeEeeecCCCCccccccCceEEEE------ecCC------------------eeEEEecCcccHHHHHHH
Q 017009 234 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT------HIPT------------------GVTVRCTEERSQLANKIK 289 (379)
Q Consensus 234 ~~~i~~~dl~i~~~RssGpGGQ~VNkt~saVrl~------h~Pt------------------gi~v~~~~~RSq~~Nk~~ 289 (379)
++.||++||+++|+|||||||||||||+|+|+|+ |+|+ ||+|+||++|||++||+.
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~ 86 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREA 86 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHH
Confidence 6789999999999999999999999999999999 7997 599999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017009 290 ALSRLKAKLLVIA 302 (379)
Q Consensus 290 A~~~L~~~L~~~~ 302 (379)
|+++|.++|++..
T Consensus 87 A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 87 ALARLVAMIKELT 99 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998743
No 11
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=96.25 E-value=0.042 Score=43.77 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcCCccc-ccHHHHHHHHHHHHhHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFW-DNRAEAQETLQALTDVKDKINL 69 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW-~D~~~a~~~~kel~~L~~~v~~ 69 (379)
|+.+++++++|+..|+||+|+ +|+.+.+.++.++..+...++.
T Consensus 31 Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999998 6899999999998888776553
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.53 E-value=18 Score=32.19 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHH
Q 017009 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~ 69 (379)
+-+..++++.+.+..-...+ -+.+.+...+|.+.+..|+| |+.+++++.+|+++|...+..
T Consensus 71 EQq~ql~~I~~e~r~~~~~L-r~ql~akr~EL~aL~~a~~~--DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSAL-RQQLISKRYEYNALLTASSP--DTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655543222222 35677778899999999987 999999999999888765543
No 13
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=68.60 E-value=35 Score=29.59 Aligned_cols=86 Identities=13% Similarity=0.265 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCccc---ccHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCChhHHHHHHHH
Q 017009 29 QLEKELAELEMKAADSSFW---DNRAEAQETLQALTDVKDKINLLTD-FKTKMDDAVTIVKLTEEMDSTDAGLLEEAASI 104 (379)
Q Consensus 29 ~~~~~~~~le~~~~dp~fW---~D~~~a~~~~kel~~L~~~v~~~~~-l~~~~~d~~~l~eL~~e~~~~D~el~eea~~e 104 (379)
..+++++.|=..++|+++. .|...+.++.++..+-...+..|.. |...++|-..+.+++.+....=.+.+.++...
T Consensus 43 ~vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~ 122 (152)
T 4fla_A 43 TVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKK 122 (152)
T ss_dssp HHHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888885 5678888888888888888887776 56677787777777643211112334444555
Q ss_pred HHHHHHHHHH
Q 017009 105 IKELNKALDQ 114 (379)
Q Consensus 105 i~~l~~~l~~ 114 (379)
+++.+.++.+
T Consensus 123 leeyK~Kl~r 132 (152)
T 4fla_A 123 LEEYKQKLAR 132 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 14
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=49.39 E-value=81 Score=32.53 Aligned_cols=70 Identities=7% Similarity=0.038 Sum_probs=50.0
Q ss_pred HHHHHH-HHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHH
Q 017009 33 ELAELE-MKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKA 111 (379)
Q Consensus 33 ~~~~le-~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~ 111 (379)
.++.++ .-+++|+| +|+.+++.++-...|-.+|.....|.....+...+.+-+ ..+++++..++++
T Consensus 136 ~~~~l~~~y~~~p~F--~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eL-----------k~lE~eL~e~e~e 202 (536)
T 3err_A 136 IREKMKKNYMSNPSY--NYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNEL-----------QKLEDDAKDNQQK 202 (536)
T ss_dssp HHHHHHHHTTTSTTC--SHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHH-----------HHHHHHHHHHHHH
Confidence 345665 46889998 899999999999999999988888777766666555432 2345566666666
Q ss_pred HHHH
Q 017009 112 LDQF 115 (379)
Q Consensus 112 l~~l 115 (379)
+.++
T Consensus 203 L~~l 206 (536)
T 3err_A 203 LEAL 206 (536)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.10 E-value=1.6e+02 Score=26.83 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 017009 26 GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (379)
Q Consensus 26 ~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~ 72 (379)
+++..+.+++..+.++..- .+++.+..+.+++..++..+..+++
T Consensus 68 ~i~~~~~ri~~~~~~l~~v---~~~kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 68 TLQDTNAKIASIQKKMSEI---KSERELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHC---SSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666442 2666777777777776666555544
No 16
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=47.28 E-value=1.2e+02 Score=26.34 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=60.7
Q ss_pred cCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH----HHHHHHHhhhhcC-----CC-
Q 017009 25 AGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK-INLLTDFKTKMD----DAVTIVKLTEEMD-----ST- 93 (379)
Q Consensus 25 ~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~-v~~~~~l~~~~~----d~~~l~eL~~e~~-----~~- 93 (379)
|+=++..+++++|= .-.+|. |...|.+++|....-... .+...+....++ .++.|-||+...+ ..
T Consensus 13 f~~eeks~~L~~Li-rs~~Pe---DL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~ 88 (158)
T 1naf_A 13 FEDEEKSKMLARLL-KSSHPE---DLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGS 88 (158)
T ss_dssp --CCHHHHHHHHHH-SSCSTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----C
T ss_pred cCcHHHHHHHHHHH-hcCChh---hHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcc
Confidence 44445555555551 123354 778888888765543222 344444333333 3445555554321 11
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhh
Q 017009 94 DAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEK 160 (379)
Q Consensus 94 D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~ 160 (379)
|.++..++...+......+.+|- +...|+..++ .-...+.+=...++..|..+...
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~Li-----~e~~ddee~L------~elL~~ND~Ln~vl~kY~~~~~g 144 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFRLA-----SDTEDNDEAL------AEILQANDNLTQVINLYKQLVRG 144 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHHHH-----HHCCSCHHHH------HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-----HHccCCHHHH------HHHHHhhHHHHHHHHHHHHHhcC
Confidence 55788888888877777766542 1111211121 11345555566677777766443
No 17
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=44.08 E-value=61 Score=27.86 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKD 65 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~ 65 (379)
++.+..++.+|+.+|..-. .++..++.+..|++.+++
T Consensus 68 v~~v~~~F~~Ld~~L~~l~--~~s~e~~~i~~EY~r~k~ 104 (140)
T 1xaw_A 68 LDEINKELSRLDKELDDYR--EESEEYMAAADEYNRLKQ 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSC--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Confidence 5566667777777765511 345566667777777654
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.03 E-value=72 Score=35.78 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 017009 104 IIKELNKALDQF 115 (379)
Q Consensus 104 ei~~l~~~l~~l 115 (379)
+...|+.+++++
T Consensus 1031 e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1031 QNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 19
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=41.42 E-value=33 Score=27.42 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCCcccccc--CceEEEEecCCe----e-EEEecCcccHHHHHHHHHHHHHHHHHHHH
Q 017009 251 GKGGQNVNKV--ETAVRITHIPTG----V-TVRCTEERSQLANKIKALSRLKAKLLVIA 302 (379)
Q Consensus 251 GpGGQ~VNkt--~saVrl~h~Ptg----i-~v~~~~~RSq~~Nk~~A~~~L~~~L~~~~ 302 (379)
|+||-++++- +|.|+|.-.+.| . ++... + .+-+.|..++...+.+.+
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHHhhHH
Confidence 9999999875 477887655555 3 44432 2 567778888777765444
No 20
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.74 E-value=1.4e+02 Score=23.54 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=22.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCC
Q 017009 2 QDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADS 44 (379)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~dp 44 (379)
|+...++.+++.|.... ..+.+++.+++.++.+|
T Consensus 1 ~~~~~L~~~i~~L~~q~---------~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 1 MEKSQLESRVHLLEQQK---------EQLESSLQDALAKLKNR 34 (85)
T ss_dssp CCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHTCSSS
T ss_pred CcHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhccC
Confidence 34455666666665553 45667788888888776
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.05 E-value=2.4e+02 Score=28.23 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017009 98 LEEAASIIKELNKALDQF 115 (379)
Q Consensus 98 ~eea~~ei~~l~~~l~~l 115 (379)
..++.++...+.+++.++
T Consensus 560 ~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 560 QAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444545554544443
No 22
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=33.99 E-value=2.3e+02 Score=24.44 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTD 72 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~ 72 (379)
+..+..-+.+.+..++.+++-+|+..++.+++++..++..|+.+..
T Consensus 22 ~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~ 67 (218)
T 3fb2_A 22 FRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAG 67 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4556666788888888888889999999999999999988886554
No 23
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.99 E-value=4.1e+02 Score=26.17 Aligned_cols=18 Identities=6% Similarity=0.099 Sum_probs=12.7
Q ss_pred cCCC---cHHHHHHHHHHHHh
Q 017009 353 MDGE---LEPFIKSYLKYKYS 370 (379)
Q Consensus 353 m~G~---ld~~i~~~~~~~~~ 370 (379)
+.|- ++-+|-+++...+.
T Consensus 377 lngs~lav~R~l~allE~~~~ 397 (421)
T 1ses_A 377 LNNTALATPRILAMLLENHQL 397 (421)
T ss_dssp EEEEEEEETHHHHHHHHHHBC
T ss_pred cCCccchHHHHHHHHHHhCCC
Confidence 4665 78888888876543
No 24
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=28.46 E-value=1.8e+02 Score=29.27 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 017009 102 ASIIKELNKALDQF 115 (379)
Q Consensus 102 ~~ei~~l~~~l~~l 115 (379)
.+++...+..+..|
T Consensus 248 e~~l~~~~~~I~~L 261 (450)
T 3r6n_A 248 REKILEYKRQVQNL 261 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445444
No 25
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=28.38 E-value=2.4e+02 Score=26.29 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=15.4
Q ss_pred cCCcccccHHHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQAL 60 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel 60 (379)
.||.+|-||..++.+.+.+
T Consensus 121 ~dPHvWldp~~~~~~a~~I 139 (294)
T 3hh8_A 121 EDPHAWLNLENGIIYSKNI 139 (294)
T ss_dssp BCCCGGGSHHHHHHHHHHH
T ss_pred CCCceeCCHHHHHHHHHHH
Confidence 4899999999988776544
No 26
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.66 E-value=56 Score=26.03 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=30.1
Q ss_pred cCCCCccccccCc---eEEEEecCC-eeEEEecCcccHHHHHHHHHHHHHHHHHHH
Q 017009 250 GGKGGQNVNKVET---AVRITHIPT-GVTVRCTEERSQLANKIKALSRLKAKLLVI 301 (379)
Q Consensus 250 sGpGGQ~VNkt~s---aVrl~h~Pt-gi~v~~~~~RSq~~Nk~~A~~~L~~~L~~~ 301 (379)
=|+||+++++... +|+| ++|. .-.|+....+ ..-+.|...|...+.++
T Consensus 42 IG~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~~---~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 42 IGKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGPT---EDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp HTTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEECH---HHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECCH---HHHHHHHHHHHHHHHHH
Confidence 3999999998754 6777 5773 2245555443 44556777776655443
No 27
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.33 E-value=2.6e+02 Score=28.07 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=9.6
Q ss_pred cHHHHHHHHHHHH
Q 017009 357 LEPFIKSYLKYKY 369 (379)
Q Consensus 357 ld~~i~~~~~~~~ 369 (379)
++-+|-+++...+
T Consensus 410 v~R~i~allE~~~ 422 (455)
T 2dq0_A 410 TSRAIVAILENHQ 422 (455)
T ss_dssp HHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHcc
Confidence 3888888887654
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.07 E-value=1.9e+02 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 017009 103 SIIKELNKALDQFELTQLLS 122 (379)
Q Consensus 103 ~ei~~l~~~l~~lel~~ll~ 122 (379)
+.++.++++|+++.-..|++
T Consensus 176 ~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 176 KDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhcccCC
Confidence 45778888888887666665
No 29
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=26.79 E-value=3.4e+02 Score=24.09 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred hccCHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHH-HHHHHHHHHHH----HHHHHHHHhhhhcC-----C
Q 017009 23 ASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK-INLLTDFKTKM----DDAVTIVKLTEEMD-----S 92 (379)
Q Consensus 23 ~~~~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~-v~~~~~l~~~~----~d~~~l~eL~~e~~-----~ 92 (379)
.+|+-++.-+.+.+| +.. .--.|...|.+++|....-... .+.+.+....+ ..++.|-||+.... .
T Consensus 27 ~if~deekSa~L~eL---irs-~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~ 102 (186)
T 1oxz_A 27 VIFEDEEKSKMLARL---LKS-SHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAA 102 (186)
T ss_dssp ----CTTHHHHHHHH---HSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCT
T ss_pred ccCCcHHHHHHHHHH---hcC-CChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 345555555555554 333 2223667888877654432222 33333333333 34455556654321 1
Q ss_pred C-ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHhhC
Q 017009 93 T-DAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQ 161 (379)
Q Consensus 93 ~-D~el~eea~~ei~~l~~~l~~lel~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~ 161 (379)
. |.++..++...++.....+.+|- +...|+..++ .-...+.+=...++..|..+....
T Consensus 103 ~~d~Ell~eL~~~Ck~~qp~i~~Li-----~e~~ddee~L------~elL~~ND~Ln~vl~kY~~~~~g~ 161 (186)
T 1oxz_A 103 GSSEDLMKELYQRCERMRPTLFRLA-----SDTEDNDEAL------AEILQANDNLTQVINLYKQLVRGE 161 (186)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-----HHCCSCHHHH------HHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-----HHccCCHHHH------HHHHHhhHHHHHHHHHHHHHhcCC
Confidence 2 56888888888887777776542 1111211121 123455556667777777776554
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.06 E-value=4.1e+02 Score=26.19 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=12.9
Q ss_pred ccCCC---cHHHHHHHHHHHH
Q 017009 352 VMDGE---LEPFIKSYLKYKY 369 (379)
Q Consensus 352 vm~G~---ld~~i~~~~~~~~ 369 (379)
.+.|- ++-+|-+++...+
T Consensus 381 tl~Gs~~av~R~i~allE~~~ 401 (425)
T 2dq3_A 381 TLNGSGLAVGRTLAAILENYQ 401 (425)
T ss_dssp EEEEEEEEHHHHHHHHHHHTB
T ss_pred EEeccccHHHHHHHHHHHhCC
Confidence 45666 7888888887654
No 31
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=25.55 E-value=1.7e+02 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.467 Sum_probs=20.0
Q ss_pred CcEEEecCCCChHHHHHHHHHHHHHHHHHHhhCCceEEE
Q 017009 129 GAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRV 167 (379)
Q Consensus 129 ~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~~~~~~v 167 (379)
.-++.+++|..| |.+.|.. +.+.|-.++|
T Consensus 312 ~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~ 340 (341)
T 3ktd_A 312 RPVLRLHPGTPN-----WEKQLIH-----AETLGARIEV 340 (341)
T ss_dssp CCEEEECTTSTT-----HHHHHHH-----HHHHTCEEEE
T ss_pred CceeeecCCCch-----HHHHHHH-----HHhCCCeeee
Confidence 448999999987 8888754 4455554443
No 32
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=25.45 E-value=1.1e+02 Score=22.53 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHH
Q 017009 3 DFYNLRKDVEAASDRVEEIRASA-GLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLL 70 (379)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~ 70 (379)
...++++++..+..|+..++++- .|...+++++..|.+++.-.=-.||+ ...+.++-..+.+.+..|
T Consensus 3 swaefkqrlaaiktrlqalggseaelaafekeiaafeselqaykgkgnpe-vealrkeaaairdelqay 70 (73)
T 2a3d_A 3 SWAEFKQRLAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPE-VEALRKEAAAIRDELQAY 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSST-TTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHHHh
Confidence 35688999999999999998775 68888999999988886433233332 122444445554444443
No 33
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=24.53 E-value=1.5e+02 Score=23.37 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCeeEEEEEEecc---------chhhcccccccceeEEeeCCCCCCCceecc-cceeEeec
Q 017009 176 AGIKSAVIEVEGR---------YAYGYLSGEKGTHRIVRQSPFNAKGLRQTS-FSGAEVMP 226 (379)
Q Consensus 176 ~G~k~~~~~i~G~---------~ay~~lk~E~GvHRv~Rvs~~~~~~rrhts-~a~V~v~P 226 (379)
+++..|.|.+.|. +.|.|--. .|.|.+.-. .++..|...+| .++|.|-+
T Consensus 30 g~V~kVef~vdg~~vg~dt~apy~~~w~~~-~G~htl~a~-AtD~~G~~~tS~~v~vtV~~ 88 (98)
T 3pe9_A 30 GKISRVDFLVDGEVIGSDREAPYEYEWKAV-EGNHEISVI-AYDDDDAASTPDSVKIFVKQ 88 (98)
T ss_dssp SCEEEEEEEETTEEEEEECSSSEEEEEECC-SEEEEEEEE-EEETTCCBCCCEEEEEEEEC
T ss_pred CCEEEEEEEECCEEecccccCCEEEEEEcC-CccEEEEEE-EEECCCCEEeeeEEEEEECc
Confidence 4599999999984 34554444 899999876 78889998876 34555543
No 34
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=24.31 E-value=31 Score=25.56 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=29.7
Q ss_pred CCCCcccccc--CceEEEEecCCee---EEEecCcccHHHHHHHHHHHHHHHHH
Q 017009 251 GKGGQNVNKV--ETAVRITHIPTGV---TVRCTEERSQLANKIKALSRLKAKLL 299 (379)
Q Consensus 251 GpGGQ~VNkt--~saVrl~h~Ptgi---~v~~~~~RSq~~Nk~~A~~~L~~~L~ 299 (379)
|+||.++++- +|.++|.-.+.|- +|..... ..+-..|..++..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 9999999876 5678876656552 3333332 3455678777777663
No 35
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=23.78 E-value=1.9e+02 Score=20.32 Aligned_cols=42 Identities=2% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 017009 71 TDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFEL 117 (379)
Q Consensus 71 ~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~~l~~~l~~lel 117 (379)
.+++..++++..+++.+ .=+-....+..++..++..+..++.
T Consensus 7 eeL~~DL~El~~Ll~~A-----kR~rVk~~L~~ei~~lE~ei~~~~~ 48 (50)
T 2a26_A 7 EELQKDLEEVKVLLEKA-----TRKRVRDALTAEKSKIETEIKNKMQ 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHC-----CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666667777776664 3578888899999999988876654
No 36
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=23.58 E-value=2.2e+02 Score=26.86 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=15.4
Q ss_pred cCCcccccHHHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQAL 60 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel 60 (379)
.||.+|-||..++.+.+.+
T Consensus 128 ~DPHvWldp~n~~~~a~~I 146 (307)
T 3ujp_A 128 PNPHAWMSPRNALVYVENI 146 (307)
T ss_dssp BCCCCTTCHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHH
Confidence 4899999999988776544
No 37
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.89 E-value=6.1e+02 Score=25.73 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=25.0
Q ss_pred hccCHHHHHHHHHHHHHHhcCCccc---ccHHHHHHHHHHHHhHHHHHHHHHH
Q 017009 23 ASAGLQQLEKELAELEMKAADSSFW---DNRAEAQETLQALTDVKDKINLLTD 72 (379)
Q Consensus 23 ~~~~l~~~~~~~~~le~~~~dp~fW---~D~~~a~~~~kel~~L~~~v~~~~~ 72 (379)
..+|+..++...+.+.+.+..-.+- ++.++..++-.+...+...++.++.
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~ 91 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEE 91 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555444331 2344444444444444444444443
No 38
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=22.67 E-value=3.5e+02 Score=22.89 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDF 73 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l 73 (379)
++.+..-+.+.+..++.+++=+|....+.+++++..+...|..+..-
T Consensus 12 ~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~ 58 (216)
T 1u5p_A 12 IKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDR 58 (216)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667888888999888899999999999999998888876553
No 39
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.74 E-value=75 Score=24.92 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=29.3
Q ss_pred cCCCCcccccc--CceEEEEecCCe------eEEEecCcccHHHHHHHHHHHHHHHHH
Q 017009 250 GGKGGQNVNKV--ETAVRITHIPTG------VTVRCTEERSQLANKIKALSRLKAKLL 299 (379)
Q Consensus 250 sGpGGQ~VNkt--~saVrl~h~Ptg------i~v~~~~~RSq~~Nk~~A~~~L~~~L~ 299 (379)
=|+||-++|+- +|.|+|.-.+.| -.|..... ..|-..|..++...+.
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVG 86 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHH
Confidence 39999999986 467887655555 12333332 2466677777766554
No 40
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.69 E-value=2.5e+02 Score=26.49 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=15.4
Q ss_pred cCCcccccHHHHHHHHHHH
Q 017009 42 ADSSFWDNRAEAQETLQAL 60 (379)
Q Consensus 42 ~dp~fW~D~~~a~~~~kel 60 (379)
.||.+|-||..++.+.+.+
T Consensus 142 ~DPHvWldp~n~~~~a~~I 160 (321)
T 1xvl_A 142 PNPHAWMSPRNALVYVENI 160 (321)
T ss_dssp BCCCGGGSHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHH
Confidence 4899999999988776544
No 41
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.56 E-value=1.3e+02 Score=21.85 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Q 017009 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAAD 43 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~~d 43 (379)
-+.+..+.+.+.+..+++--.++++..++++|-+.+..
T Consensus 6 aleekvkaleekvkalggggrieelkkkweelkkkiee 43 (67)
T 1lq7_A 6 ALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEE 43 (67)
T ss_dssp HHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888765543
No 42
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.16 E-value=1.7e+02 Score=21.22 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Q 017009 4 FYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKA 41 (379)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~le~~~ 41 (379)
+.+++..-+++...++.+++--.+...+.+...||+++
T Consensus 27 ieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888765
No 43
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.14 E-value=3.5e+02 Score=26.67 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=11.3
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 017009 1 MQDFYNLRKDVEAASDRVE 19 (379)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (379)
|..+.-+++..+.+.+.+.
T Consensus 1 mld~~~~r~~~~~~~~~~~ 19 (421)
T 1ses_A 1 MVDLKRLRQEPEVFHRAIR 19 (421)
T ss_dssp CCCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHH
Confidence 5556666666666655554
No 44
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=20.97 E-value=2.4e+02 Score=20.26 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=37.6
Q ss_pred HHhhCCceEEEEeeccCCCCCeeEEEEEEecc------chhhcccccccceeEEeeCCCCCCCc
Q 017009 157 WGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGR------YAYGYLSGEKGTHRIVRQSPFNAKGL 214 (379)
Q Consensus 157 ~a~~~~~~~~vi~~~~~~~~G~k~~~~~i~G~------~ay~~lk~E~GvHRv~Rvs~~~~~~r 214 (379)
.....|..+.-+..... .+...+.+.+... .+...|+.-+||..+.|+++++-.+-
T Consensus 25 ~la~~~inI~~i~~~~~--~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~~~~~ 86 (88)
T 2ko1_A 25 VISKFDTNIRTIVLNAK--DGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLEHHHH 86 (88)
T ss_dssp HHTTSSSCEEEEEEEEC--SSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCCCCCC
T ss_pred HHHHCCCCeEEEEEEEc--CCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccccccc
Confidence 34456777766655443 2344566665542 34577888999999999999987654
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=20.49 E-value=3.6e+02 Score=30.19 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 017009 6 NLRKDVEAASDRVEEI 21 (379)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (379)
++++.++.+..++..+
T Consensus 861 ~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 861 AKDEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554444
No 46
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=20.33 E-value=3.8e+02 Score=22.34 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHH
Q 017009 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIK 106 (379)
Q Consensus 27 l~~~~~~~~~le~~~~dp~fW~D~~~a~~~~kel~~L~~~v~~~~~l~~~~~d~~~l~eL~~e~~~~D~el~eea~~ei~ 106 (379)
++.+..=+.+-+..++++++ .|+...+..++.+..+...+......-..+...- -+|+.. .+.-.+.+...+.
T Consensus 65 ~~el~~Wi~ek~~~a~~~~~-~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g--~~Li~~----~~~~~~~I~~rl~ 137 (161)
T 3lbx_A 65 ADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTR--EERFTM----GHSAHEETKAHIE 137 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSCT----TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc----CCCchHHHHHHHH
Confidence 33444444455556777776 8999999999999988888877665443333322 233322 2222344555555
Q ss_pred HHHHHHHH
Q 017009 107 ELNKALDQ 114 (379)
Q Consensus 107 ~l~~~l~~ 114 (379)
++...=+.
T Consensus 138 eL~~~W~~ 145 (161)
T 3lbx_A 138 ELRHLWDL 145 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 47
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=20.31 E-value=3.9e+02 Score=22.48 Aligned_cols=16 Identities=0% Similarity=0.144 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHHH
Q 017009 53 AQETLQALTDVKDKIN 68 (379)
Q Consensus 53 a~~~~kel~~L~~~v~ 68 (379)
++++..++..++..+.
T Consensus 42 aq~li~eF~~~Q~~~~ 57 (151)
T 2pih_A 42 VSTIVNQIKALQKQAV 57 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
Done!