RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017009
(379 letters)
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 447 bits (1151), Expect = e-158
Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 8/369 (2%)
Query: 10 DVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINL 69
D+E + R+E + + Q E L ELE + D S W++ A++ Q ++ ++
Sbjct: 2 DLERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDT 61
Query: 70 LTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEG 129
++ + + +++ + E ++E K LD+ LL+ P+ ++
Sbjct: 62 FRSLESDLQGLLELMEELPAEER------EALKPELEEAAKKLDELYHQTLLNFPHAEKN 115
Query: 130 AVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRY 189
A+++I GAGGT+A DWA+MLLRMY R+ E+Q ++ VV+ + G EAGI A I V+G
Sbjct: 116 AILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGEN 175
Query: 190 AYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRA 249
AYG LS E G HR+VR SPF+A G R TSF+G EV+P + +E ++V + E+L I RA
Sbjct: 176 AYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEV-DEEVEVVLKPEELRIDVMRA 234
Query: 250 GGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASE 309
G GGQ VN ++AVR+ H+PTG+TV C RSQ+ NK AL LKA+L + ++R E
Sbjct: 235 SGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEE 294
Query: 310 IKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKY 369
+K +RG+ EWG QIR+YV VKD RTG D +V+DG+L I + L++K
Sbjct: 295 LKALRGEVRPIEWGSQIRSYVLDK-NYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKA 353
Query: 370 SMSLSASDA 378
+
Sbjct: 354 GRRQGTEEV 362
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 437 bits (1127), Expect = e-154
Identities = 138/366 (37%), Positives = 217/366 (59%), Gaps = 4/366 (1%)
Query: 1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL 60
M + + ++ ++R + +R ++ L E+ + W+ AQ +
Sbjct: 1 MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKER 60
Query: 61 TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
+ ++ ++ L K ++D +++L E D D EA + + L + L Q E ++
Sbjct: 61 SSLEAVVDTLDQMKQGLEDVSGLLELAVEAD--DEETFNEAVAELDALEEKLAQLEFRRM 118
Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKS 180
SG YD + I AG+GGT+AQDWA ML RMY+RW E + +KT ++E+S GE AGIKS
Sbjct: 119 FSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKS 178
Query: 181 AVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEE 240
I++ G YAYG+L E G HR+VR+SPF++ G R TSFS A V P + ++ +D++I
Sbjct: 179 VTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEV-DDDIDIEINPA 237
Query: 241 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
DL I RA G GGQ+VN+ E+AVRITHIPTG+ +C +RSQ NK +A+ ++KAKL
Sbjct: 238 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYE 297
Query: 301 IAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPF 360
+ +++ +E + + + WG QIR+YV + +KD+RTG ET + +V+DG L+ F
Sbjct: 298 VEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQF 356
Query: 361 IKSYLK 366
I++ LK
Sbjct: 357 IEASLK 362
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 197 bits (502), Expect = 6e-60
Identities = 104/345 (30%), Positives = 164/345 (47%), Gaps = 19/345 (5%)
Query: 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKL 86
LQ +E EL +D + E + + ++ + + ++K + + ++
Sbjct: 19 LQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEM 78
Query: 87 TEEMDSTDAGLLEEAASIIKELNKALDQFE--LTQLL--SGPYDKEGAVISITAGAGGTD 142
++ S D L E A +K A +++E L LL P D + ++ I AGG +
Sbjct: 79 IKD-ASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDE 137
Query: 143 AQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHR 202
A +A LL MY ++ E Q +K V+E S G+K V V G+ Y L E G HR
Sbjct: 138 AALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYESGAHR 197
Query: 203 IVRQSPFNAKGLRQTSFSGAEVMPLLPE-ESMDVQIPEEDLEISFSRAGGKGGQNVNKVE 261
+ R ++G TS A V+ ++PE E ++ +I +DL + A G GGQNVNKV
Sbjct: 198 VQRVPVTESQGRVHTS--TATVL-VMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVA 254
Query: 262 TAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAE 321
TAVRI H+PT + V EER+Q N+ KA+ ++A++ + E R V
Sbjct: 255 TAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTV--- 311
Query: 322 WG-----QQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 361
G ++IR Y F P V D R G + S++ G+L+ I
Sbjct: 312 -GTGDRSERIRTYNF-PQNRVTDHRIGLTLQKLDSILSGKLDEVI 354
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 196 bits (500), Expect = 7e-60
Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 13/340 (3%)
Query: 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKL 86
L +LE+E ELE +D ++ Q + ++ + I L+ +++ ++D ++
Sbjct: 5 LDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLED----LEQ 60
Query: 87 TEEMDSTDAGLLEEAASIIKELNKALDQFE--LTQLL--SGPYDKEGAVISITAGAGGTD 142
E + D L E A + + L + E L + L P D+ A++ I AG GG +
Sbjct: 61 AESLLD-DPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEE 119
Query: 143 AQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHR 202
A +A L MY+R+ E+ ++T V++ + G V EV G AYG E G HR
Sbjct: 120 AALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHR 179
Query: 203 IVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 262
+ R +G TS + V+P E D + +++ I RA G GGQ VN ++
Sbjct: 180 VQRVPVTETQGRIHTSTATVAVLPKAEE--EDFALNMDEIRIDVMRASGPGGQGVNTTDS 237
Query: 263 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKA-E 321
AVR+ H+PTG+ V C + RSQ+ N+ KAL L+++LL + + A +++ R + E
Sbjct: 238 AVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGE 297
Query: 322 WGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 361
++IR Y F P V D R G T D+ V+ G L P +
Sbjct: 298 RSEKIRTYNF-PQSRVTDHRIGFTTHDLEGVLSGHLTPIL 336
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 187 bits (478), Expect = 2e-56
Identities = 101/344 (29%), Positives = 160/344 (46%), Gaps = 20/344 (5%)
Query: 27 LQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKL 86
L+ L + E++ D+ ++ + + + D TD++ +D ++
Sbjct: 9 LEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQED----IET 64
Query: 87 TEEMDSTDAGLLEEAASIIKELNKALDQFE--LTQLL--SGPYDKEGAVISITAGAGGTD 142
+ M D + E A ++E + +Q E L LL P D+ A + + AG GG +
Sbjct: 65 AQMMLD-DPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123
Query: 143 AQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHR 202
A +A L RMY R+ E +R++ ++ S GE G K + ++ G YG L E G HR
Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183
Query: 203 IVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVET 262
+ R ++G TS VMP ++ + DL I R+ G GGQ+VN ++
Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPE-LPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDS 242
Query: 263 AVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEW 322
A+RITH+PTG+ V C +ERSQ NK KALS L A++ +R R + +
Sbjct: 243 AIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLL---- 298
Query: 323 G-----QQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 361
G + R Y F P V D R + VM+G+L+ I
Sbjct: 299 GSGDRSDRNRTYNF-PQGRVTDHRINLTLYRLDEVMEGKLDMLI 341
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 182 bits (465), Expect = 8e-55
Identities = 102/333 (30%), Positives = 161/333 (48%), Gaps = 17/333 (5%)
Query: 30 LEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEE 89
++++ E+E A + + +++ N+ K + ++L E
Sbjct: 1 MKEKKKEIEKLLARPDLTPEQM--KNYGMEYAKIEEIENITNRIKETQEF----IELLRE 54
Query: 90 MDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADM 149
+ + + + + + L L P + A++ I G GG +A +A
Sbjct: 55 EGENELEIEKYEKELDQLYQELL-------FLLSPEASDKAIVEIRPGTGGEEAALFARD 107
Query: 150 LLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPF 209
L RMY R+ E++ + V E + GI+ V V+G+ AYG L E G HR+ R
Sbjct: 108 LFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVT 167
Query: 210 NAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHI 269
+ G TS + V+P + E D++I EDL+I RA G GGQ VNK E+AVRITH+
Sbjct: 168 ESGGRIHTSTATVAVLPEIEE--KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHL 225
Query: 270 PTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAV-KAEWGQQIRN 328
PTG+ V C ERSQ NK AL L+A+L + +EQ+ EI Q R + E ++IR
Sbjct: 226 PTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRT 285
Query: 329 YVFHPYKLVKDVRTGHETSDIVSVMDGELEPFI 361
Y F P V D R + + + ++DG+L+ I
Sbjct: 286 YNF-PQNRVTDHRINYTSYRLQEILDGDLDEII 317
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 122 bits (307), Expect = 3e-34
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 201 HRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKV 260
R+ + G + S +V + + + E +LE F + G GGQ NK
Sbjct: 11 LRLQEKPALLFPG---MAASTVQVAGR-KDYPALLPLNESELEEQFVKGHGPGGQATNKT 66
Query: 261 ETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS 308
V + H+P+G+ V+C + RS N+ A L+ K+ V +S
Sbjct: 67 SNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSGPSS 114
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 97.1 bits (242), Expect = 1e-24
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 30/141 (21%)
Query: 232 SMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRI------THIPTGV------------ 273
S V IP+ +LEI+ RA G GGQ+VNK TA+ + + +P
Sbjct: 5 SRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLI 64
Query: 274 ------TVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIR 327
++ E RSQ N+ AL+RL A + + E++A + + + + +
Sbjct: 65 SSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQ 124
Query: 328 NYVFHPYKLVKDVRTGHETSD 348
VK +R +
Sbjct: 125 KS------SVKAMRGKVRSGR 139
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural
genomics, PSI-2, protein STRU initiative; NMR
{Pseudomonas syringae PV}
Length = 108
Score = 82.6 bits (204), Expect = 1e-19
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 232 SMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTG------------------- 272
S +V +P+ ++E++ RA G GGQNVNKV +A+ +
Sbjct: 5 SNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRI 64
Query: 273 -----VTVRCTEERSQLANKIKALSRLKAKLLVIAEEQR 306
+ ++ + R+Q N+ AL RL ++ A+ +
Sbjct: 65 TSDGVIVLKAQQYRTQEQNRADALLRLSELIVNAAKLEH 103
>1j26_A Immature colon carcinoma transcript 1; peptide chain release
factors, RF-1, the GGQ motif, immature carcinoma
transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Length = 112
Score = 68.2 bits (166), Expect = 2e-14
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 25/90 (27%)
Query: 234 DVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTG--------------------- 272
IP + L IS+ R+ G GGQNVNKV + +
Sbjct: 14 SSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKIN 73
Query: 273 ----VTVRCTEERSQLANKIKALSRLKAKL 298
+ + R Q N + L +++ +
Sbjct: 74 KAGELVLTSESSRYQFRNLAECLQKIRDMI 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 7e-08
Identities = 58/340 (17%), Positives = 106/340 (31%), Gaps = 121/340 (35%)
Query: 26 GLQQLE--KELAELEMKAADSSFWDNRAEA--QETL-QALTD-VKDKINLLT-------- 71
G Q+ +L + A D W+ RA+ ++T ++ D V + LT
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQD--VWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 72 ----------DFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASII----KELNKALDQFEL 117
F+T +D + K+ +E++ E + S K L L +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEIN-------EHSTSYTFRSEKGL---LSATQF 1731
Query: 118 TQ--LLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEK----- 170
TQ L ++ A + D+ + K +
Sbjct: 1732 TQPALT---------LMEKAA---------FEDL------------KSKGLIPADATFAG 1761
Query: 171 -SLGE------EAG---IKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFS 220
SLGE A I+S V V R G P + G ++++
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYR---GMTMQV--------AVPRDELG--RSNYG 1808
Query: 221 GAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQ-----NVNKVETAVRITHIPTGVTV 275
+ P + +E L+ R G + G N N + V
Sbjct: 1809 MIAINP----GRVAASFSQEALQYVVERVGKRTGWLVEIVNYN----------VENQQYV 1854
Query: 276 RCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRG 315
+ L L+ +K + + I E Q++ ++++ G
Sbjct: 1855 -AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 42.3 bits (99), Expect = 2e-04
Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 25/130 (19%)
Query: 97 LLEEAASIIKE-LNKALDQFELTQLLSGP-YD-KEGAVISITAGAGGTDAQDWADMLLRM 153
LL A+ +I + L K F + P YD +G+ + G+ ++ D ++R+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDGSDL---RVLSGSISERIVDCIIRL 486
Query: 154 YVRWGEKQRYK-TRVVEKSLGEEAGIKSAVIE-VEGRYAYGYLSGEKGTHRIVRQSPFNA 211
V+W ++K T +++ G +G+ +G G R++ +
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT----------GV-RVIVAGTLDI 535
Query: 212 K-----GLRQ 216
G +Q
Sbjct: 536 NPDDDYGFKQ 545
Score = 42.0 bits (98), Expect = 3e-04
Identities = 53/384 (13%), Positives = 118/384 (30%), Gaps = 104/384 (27%)
Query: 45 SFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASI 104
F E E A + L+ F + ++ ++ + G ++
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKF---------LGYVSSLVEPSKVGQFDQV--- 83
Query: 105 IKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYK 164
LN L +FE L G D + T + L++ Y
Sbjct: 84 ---LNLCLTEFE-NCYLEGN-DIHALAAKLLQENDTTLVK--TKELIKNY--------IT 128
Query: 165 TRVVEK---------SLGEEAGIKSAVI---------------EVEGRYA-YGYLSGEKG 199
R++ K +L G +A + E+ Y Y L G+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD-- 186
Query: 200 THRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDV--------QIPEED-L---EISFS 247
+++ S A+ L + + + + + +++ P++D L IS
Sbjct: 187 ---LIKFS---AETLSELIRTTLDAEKVFT-QGLNILEWLENPSNTPDKDYLLSIPISC- 238
Query: 248 RAGGKGGQNVNKVETAVRITHIPTGVTVRCTEER-SQLANKIKALSRLKAKLLV---IAE 303
+ +++ H VT + +L + +K + L+ IAE
Sbjct: 239 -----------PLIGVIQLAHYV--VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 304 EQRASEIKQIRGDAVKAE-W----GQQIRNYVFHPYKLVKD-VRTGHET-SDIVSVMD-- 354
A+ + + P +++D + S ++S+ +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 355 -GELEPFIK---SYLKYKYSMSLS 374
+++ ++ S+L + +S
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEIS 369
Score = 41.6 bits (97), Expect = 4e-04
Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 92/273 (33%)
Query: 90 MDSTDAGLLEEAASIIKEL-NKALDQFELTQL--------LSGPYDKEGAVISITAGAGG 140
MD L + + +++ N+A D ++ P +++T GG
Sbjct: 1633 MD------LYKTSKAAQDVWNRA-DNHFKDTYGFSILDIVINNP-------VNLTIHFGG 1678
Query: 141 TDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGT 200
+ + M + KT + K + E + ++ EKG
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS---TSYT----------FRSEKGL 1725
Query: 201 HRIVRQSPFNAKGLRQTSF--------SGA--EVMPLLPEESMDVQIPEEDL-------E 243
L T F A E + +S + IP + E
Sbjct: 1726 -------------LSATQFTQPALTLMEKAAFEDL-----KSKGL-IPADATFAGHSLGE 1766
Query: 244 IS--FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANK---IKAL--SRLKA 296
+ S A V +E+ V + G+T++ R +L + A+ R+ A
Sbjct: 1767 YAALASLAD------VMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 297 KLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNY 329
A + + + G V +I NY
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLV------EIVNY 1846
Score = 39.3 bits (91), Expect = 0.002
Identities = 73/422 (17%), Positives = 122/422 (28%), Gaps = 127/422 (30%)
Query: 15 SDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFK 74
S VE + Q L L E E + + L+ D I+ L
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFE-----NCY----------LEG----ND-IHAL---- 104
Query: 75 TKMDDAVTIVKLTEEMDSTDAGLLEEAASIIK-------ELNKALDQFELTQLLSGPYDK 127
KL +E D+T L + +IK + D+ + L +
Sbjct: 105 --------AAKLLQENDTT----LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 128 EGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRV------VEKSLGEEAGIKSA 181
+++I G G TD D+ + L +Y Q Y V ++L E
Sbjct: 153 NAQLVAIFGGQGNTD--DYFEELRDLY------QTYHVLVGDLIKFSAETLSELI---RT 201
Query: 182 VIEVEGRYAYGY-----LSGEKGTHRI--VRQSP--FNAKGLRQTS--FSGAEVMPLLPE 230
++ E + G L T + P G+ Q + A+++ P
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 231 ESMD----VQIPEEDLEISFSRAGGKGGQN-VNKVETAVRI-THIPTGVTVRCTEERSQL 284
E + L + + A ++ V A+ + I G VRC E
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--G--VRCYEAYPNT 317
Query: 285 ANKIKALSRLKAK-------LLVIAEEQRASEIKQIRGDAVKAEWGQQI--------RNY 329
+ L +L I+ + + G+Q+ +N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 330 VF--HP---YKLVKDVR-----TGHETSDI---------------VSVMDGELEPFIKSY 364
V P Y L +R +G + S I V+ PF
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS------PFHSHL 431
Query: 365 LK 366
L
Sbjct: 432 LV 433
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 2e-07
Identities = 60/404 (14%), Positives = 114/404 (28%), Gaps = 138/404 (34%)
Query: 1 MQDFY-NLRKDVEAASDRVEEIRASAGLQQLEKELAEL--EMKAADS-----SFWDNRAE 52
+Q + + + SD I+ + ++ EL L + + +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYENCLLVLLNVQNA--- 256
Query: 53 AQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLE-EAASIIKELNKA 111
+ A ++ KI L T FK D +D L E S+ L K
Sbjct: 257 --KAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---LLKY 310
Query: 112 LDQ--FEL-TQLLSG-PYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYK--- 164
LD +L ++L+ P +SI A + + W +K
Sbjct: 311 LDCRPQDLPREVLTTNPR-----RLSIIA-----------ESIRDGLATW---DNWKHVN 351
Query: 165 ----TRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFS 220
T ++E SL + + E R + LS
Sbjct: 352 CDKLTTIIESSL-------NVLEPAEYRKMFDRLS------------------------- 379
Query: 221 GAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEE 280
+ P IP L + + + +++ V + V +
Sbjct: 380 ------VFPP---SAHIPTILLSLIWF----------DVIKSDVMV------VVNKL--H 412
Query: 281 RSQLANK--------IKALS-RLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQ------Q 325
+ L K I ++ LK KL E + A + + +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKL----ENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 326 IRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKY 369
+ Y + + GH +I + F +L +++
Sbjct: 469 LDQYFYS-H-------IGHHLKNI--EHPERMTLFRMVFLDFRF 502
Score = 30.2 bits (67), Expect = 1.3
Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 61/209 (29%)
Query: 219 FSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNK-VETAVRI----------- 266
S E+ ++ + F K + V K VE +RI
Sbjct: 46 LSKEEIDHIIMSKD-----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 267 -THIPTGVTVRCTEERSQLAN-----------------KIK-ALSRLK-AKLLVI----- 301
P+ +T E+R +L N K++ AL L+ AK ++I
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 302 -------AEEQRASEIKQIRGDAVKAEW---GQQIR-NYVFHP-----YKLVKDVRTGHE 345
+ + +++ + W V Y++ + + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 346 TSDIVSVMDGELEPFIKSYLKYK-YSMSL 373
S + + ++ ++ LK K Y L
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCL 247
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.33
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 6 NLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADS--SFWDNRAEAQETLQALTDV 63
++RK E R++E+ A++ + E KA + ++E E + +
Sbjct: 86 SIRKWREEQRKRLQELDAAS-----KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 64 KDKINLLTDFKTKMDDAV 81
DK F + D +
Sbjct: 141 ADK-----AFYQQPDADI 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.34
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
Query: 28 QQLEKELAELEMKAADSSFWDNRAEA---QETLQ 58
Q L+K A L++ A DS A A + T++
Sbjct: 20 QALKKLQASLKLYADDS------APALAIKATME 47
Score = 28.0 bits (61), Expect = 3.2
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 255 QNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKA 290
Q + K++ ++++ + + LA IKA
Sbjct: 20 QALKKLQASLKL-YAD--------DSAPALA--IKA 44
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold,
AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA
complex; HET: DNA EDC; 2.00A {Homo sapiens} PDB: 3qi5_A*
1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Length = 219
Score = 31.2 bits (70), Expect = 0.41
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 96 GLLEEAASIIKELNKA-LDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMY 154
L +A +I K ++ L Q E L GP + + A G A +WA LR Y
Sbjct: 140 SKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFY 199
Query: 155 VR 156
VR
Sbjct: 200 VR 201
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 31.3 bits (70), Expect = 0.67
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 28 QQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLT 87
+ L+++L+ E +D + +D A+ QAL + N +DA ++KL
Sbjct: 258 KSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLV 317
Query: 88 EEMDSTDAGLLEEAASIIKELNKAL 112
++ +L E + ++L K L
Sbjct: 318 TDLSVQQPEVLGEGVDVNEDLIKEL 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 30.6 bits (70), Expect = 0.92
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 33/116 (28%)
Query: 7 LRKDVEAAS-DRVEEIRASAGLQQLEKELAELEMKAAD-SSFWDNRAEAQETLQALTDVK 64
L+K+ + S +R L+ +E E+A+L + A + W+ +
Sbjct: 420 LKKEKDPDSQER---------LKAIEAEIAKLTEEIAKLRAEWERE-------------R 457
Query: 65 DKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASI----IKELNKALDQFE 116
+ + L + + ++D+ + E + L AA + + +L ++
Sbjct: 458 EILRKLREAQHRLDEV----RREIE-LAERQYDLNRAAELRYGELPKLEAEVEALS 508
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; 2.10A {Planctomyces limnophilus}
Length = 121
Score = 29.3 bits (66), Expect = 0.92
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 68 NLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKEL 108
N + D + + VT++ +E+ AS
Sbjct: 2 NAMADIRVTHEAQVTVISFPAVFQRLRETEVEQIASTFLAA 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 1.1
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+K +++ +++ + + KE L K + + L ++
Sbjct: 919 YKKLHIGLENKIMQLQRK--IDEQNKEYKSLLEKMNNL-----EITYSTETEKLRSDVER 971
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGL--LEEAASIIKELNKALDQFELTQLLS 122
+ + + + V L EE+ L + I+E E QL+S
Sbjct: 972 LRMSEEEAKNATNRVL--SLQEEIAKLRKELHQTQTEKKTIEEWADKYKH-ETEQLVS 1026
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima,
phosphoprotein, structural GENO PSI-2, protein structure
initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Length = 125
Score = 28.8 bits (65), Expect = 1.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 71 TDFKTKMDDAVTIVKLTEEMDSTDAGLLEEA 101
F K+ D V I+ +E++ +A L ++
Sbjct: 12 HMFPYKIVDDVVILMPNKELNIENAHLFKKW 42
>1hh2_P NUSA, N utilization substance protein A; transcription regulation,
termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5
d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Length = 344
Score = 28.2 bits (64), Expect = 4.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 230 EESMDVQIPEEDLEISFSRAGGKGGQNV 257
++ V +P L S A GKGGQN
Sbjct: 302 NKAARVLVPPTQL----SLAIGKGGQNA 325
>2asb_A Transcription elongation protein NUSA; protein-RNA complex,
transcription/RNA complex; 1.50A {Mycobacterium
tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB:
2atw_A
Length = 251
Score = 28.0 bits (63), Expect = 4.3
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 230 EESMDVQIPEEDLEISFSRAGGKGGQNV 257
+ V +P+ L S A GK GQN
Sbjct: 183 ARAARVVVPDFQL----SLAIGKEGQNA 206
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG,
structural genomics, joint center for structural
genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1
PDB: 1t6r_A* 1vc1_A
Length = 110
Score = 26.4 bits (59), Expect = 6.3
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 72 DFKTKMDDAVTIVKLTEEMDSTDAGLLEEA 101
D IV++ ++D+ ++ L+E
Sbjct: 5 KLDIVEQDDKAIVRVQGDIDAYNSSELKEQ 34
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
sporulation, serine kinase, transcription; HET: ADP;
2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1
PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Length = 116
Score = 26.4 bits (59), Expect = 6.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 72 DFKTKMDDAVTIVKLTEEMDSTDAGLLEEA 101
++ V IV+L+ E+D A L E
Sbjct: 4 AIDLEVKQDVLIVRLSGELDHHTAEELREQ 33
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 6.7
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 15/124 (12%)
Query: 6 NLRKDVEAASDRVEEIRA-----SAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL 60
+ D+ D+ ++ + L LAE E KA + + N+ E+ +
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM-----I 1041
Query: 61 TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALD--QFELT 118
++++ ++ K++ + KL E + E + I EL L + EL
Sbjct: 1042 SELEVRLKKEE--KSRQELEKIKRKLEGESSDLHE-QIAELQAQIAELKAQLAKKEEELQ 1098
Query: 119 QLLS 122
L+
Sbjct: 1099 AALA 1102
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 8.9
Identities = 51/306 (16%), Positives = 92/306 (30%), Gaps = 77/306 (25%)
Query: 1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDN---------RA 51
+Q L+ E + +E+ ++ +++ LE K + + D RA
Sbjct: 731 LQFVPELK---EFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRA 787
Query: 52 EAQETLQALTDVKDKINLLTDF---KTKMDDAVTIVKLTE-----------EMDSTD--- 94
Q L K + ++ + + E EM++
Sbjct: 788 NIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTRWEMEAFGEFS 847
Query: 95 -AGLLEEAAS--IIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLL 151
G +E A I N L + +G D + + D D+
Sbjct: 848 LEGCVEMAWIMGFISYHNGNLKG----RPYTGWVDSKT-----------KEPVDDKDV-- 890
Query: 152 RMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKG-THRIVRQ---S 207
K +Y+T ++E S GI+ +E GY +K ++ +
Sbjct: 891 --------KAKYETSILEHS-----GIR----LIEPELFNGYNPEKKEMIQEVIVEEDLE 933
Query: 208 PFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRIT 267
PF + S AE + +D+ E E S G + +
Sbjct: 934 PF------EASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVA 987
Query: 268 H-IPTG 272
IPTG
Sbjct: 988 GQIPTG 993
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7
homolog C; tripartite complex, L27 tetramer, cell
junction; 2.95A {Homo sapiens} PDB: 1rso_A
Length = 254
Score = 27.2 bits (59), Expect = 9.6
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 13/125 (10%)
Query: 1 MQDFYNLRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQAL 60
+ K + L L +L D +F + +++L +L
Sbjct: 56 EVTLLDNPKLEVLFQGPGSDTGLYELLAALPAQLQPHVDSQEDLTFLWDMFG-EKSLHSL 114
Query: 61 TDVKDKINLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQL 120
+ +K++ ++ + + A L ++ A ++ + EL +L
Sbjct: 115 VKIHEKLH---YYEKQSPVPIL---------HGAAALADDLAEELQNKPLNSEIRELLKL 162
Query: 121 LSGPY 125
LS P
Sbjct: 163 LSKPN 167
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.353
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,672,765
Number of extensions: 351811
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 73
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.3 bits)