RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017009
(379 letters)
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 271 bits (693), Expect = 4e-89
Identities = 136/360 (37%), Positives = 215/360 (59%), Gaps = 4/360 (1%)
Query: 7 LRKDVEAASDRVEEIRASAGLQQLEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDK 66
+ ++ ++R + +R ++ L E+ + W+ AQ + + ++
Sbjct: 4 VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAV 63
Query: 67 INLLTDFKTKMDDAVTIVKLTEEMDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYD 126
++ L K ++D +++L E D + EA + + L + L Q E ++ SG YD
Sbjct: 64 VDTLDQMKQGLEDVSGLLELAVEADDEETF--NEAVAELDALEEKLAQLEFRRMFSGEYD 121
Query: 127 KEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVE 186
+ I AG+GGT+AQDWA ML RMY+RW E + +KT ++E+S GE AGIKS I++
Sbjct: 122 SADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKIS 181
Query: 187 GRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISF 246
G YAYG+L E G HR+VR+SPF++ G R TSFS A V P + ++ +D++I DL I
Sbjct: 182 GDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDD-IDIEINPADLRIDV 240
Query: 247 SRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQR 306
RA G GGQ+VN+ E+AVRITHIPTG+ +C +RSQ NK +A+ ++KAKL + +++
Sbjct: 241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKK 300
Query: 307 ASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLK 366
+E + + + WG QIR+YV + +KD+RTG ET + +V+DG L+ FI++ LK
Sbjct: 301 NAEKQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLK 359
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 212 bits (541), Expect = 1e-66
Identities = 94/346 (27%), Positives = 160/346 (46%), Gaps = 4/346 (1%)
Query: 30 LEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEE 89
L + E++ D+ ++ + + + D TD++ +D T + ++
Sbjct: 2 LHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDD 61
Query: 90 MDSTDAGLLEEAASIIKELNKALDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADM 149
+ +E ++ + Q ++ L P D+ A + + AG GG +A +A
Sbjct: 62 PE-MREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGD 120
Query: 150 LLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPF 209
L RMY R+ E +R++ ++ S GE G K + ++ G YG L E G HR+ R
Sbjct: 121 LFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPAT 180
Query: 210 NAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHI 269
++G TS VMP ++ + DL I R+ G GGQ+VN ++A+RITH+
Sbjct: 181 ESQGRIHTSACTVAVMPE-LPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHL 239
Query: 270 PTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRN 328
PTG+ V C +ERSQ NK KALS L A++ +R R + + + + R
Sbjct: 240 PTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRT 299
Query: 329 YVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLS 374
Y F P V D R + VM+G+L+ I+ ++ + L+
Sbjct: 300 YNF-PQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLA 344
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 189 bits (480), Expect = 1e-57
Identities = 108/348 (31%), Positives = 165/348 (47%), Gaps = 19/348 (5%)
Query: 30 LEKELAELEMKAADSSFWDNRAEAQETLQALTDVKDKINLLTDFKTKMDDAVTIVKLTEE 89
++++ E+E A + + KI + + ++ + ++L E
Sbjct: 1 MKEKKKEIEKLLARPDLTPEQM------KNYGMEYAKIEEIENITNRIKETQEFIELLRE 54
Query: 90 MDSTDAGLLEEAASIIKELNKALDQFE-LTQLLSGPYDKEGAVISITAGAGGTDAQDWAD 148
E I++ K LDQ L P + A++ I G GG +A +A
Sbjct: 55 EG--------ENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFAR 106
Query: 149 MLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSP 208
L RMY R+ E++ + V E + GI+ V V+G+ AYG L E G HR+ R
Sbjct: 107 DLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPV 166
Query: 209 FNAKGLRQTSFSGAEVMPLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITH 268
+ G TS + V L E D++I EDL+I RA G GGQ VNK E+AVRITH
Sbjct: 167 TESGGRIHTSTAT--VAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITH 224
Query: 269 IPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIR 327
+PTG+ V C ERSQ NK AL L+A+L + +EQ+ EI Q R + E ++IR
Sbjct: 225 LPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIR 284
Query: 328 NYVFHPYKLVKDVRTGHETSDIVSVMDGELEPFIKSYLKYKYSMSLSA 375
Y F P V D R + + + ++DG+L+ I +++ +L
Sbjct: 285 TYNF-PQNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIENNLEE 331
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 74.2 bits (182), Expect = 5e-17
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 25/102 (24%)
Query: 231 ESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHI--------------------- 269
+ IP + L IS+ R+ G GGQNVNKV + +
Sbjct: 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKN 70
Query: 270 ----PTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRA 307
+ + R Q N + L +++ + +
Sbjct: 71 KINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASGPSSG 112
>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG,
MPG) {Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 31.4 bits (71), Expect = 0.11
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 96 GLLEEAASIIKELNKA-LDQFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMY 154
L +A +I K ++ L Q E L GP + + A G A +WA LR Y
Sbjct: 138 SKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFY 197
Query: 155 VR 156
VR
Sbjct: 198 VR 199
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 30.9 bits (69), Expect = 0.22
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 226 PLLPEESMDVQIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTV--------RC 277
P L + V I L + F+ G+G V + + +
Sbjct: 11 PELVQAVQHVVIGPSSLIVHFNEVIGRGHF--GCVYHGTLLDNDGKKIHCAVKSLNRITD 68
Query: 278 TEERSQLANKIKALSRLK 295
E SQ + +
Sbjct: 69 IGEVSQFLTEGIIMKDFS 86
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc
7120 [TaxId: 103690]}
Length = 201
Score = 28.2 bits (61), Expect = 1.3
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 133 SITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVV 168
S G G + W + + G Y +
Sbjct: 13 SFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGI 48
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 27.0 bits (59), Expect = 2.2
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 24 SAGLQQLEKELAELEMKAADSSFWDN 49
S G ++++ ++ +L + +
Sbjct: 2 SPGKRRMDTDVVKLIESKHEVTILGG 27
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5
{Escherichia coli [TaxId: 562]}
Length = 293
Score = 27.3 bits (60), Expect = 2.6
Identities = 8/85 (9%), Positives = 25/85 (29%)
Query: 166 RVVEKSLGEEAGIKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVM 225
+ L A + + + +A+ + R + + + A
Sbjct: 87 QAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDT 146
Query: 226 PLLPEESMDVQIPEEDLEISFSRAG 250
P ++ Q+ + +++ G
Sbjct: 147 PHPARIGLNCQLAQVAERVNWLGLG 171
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 27.1 bits (59), Expect = 2.6
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 134 ITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVI 183
+ G G ++ L R R+ G+ G++ A
Sbjct: 132 LVIGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAF 181
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 175
Score = 27.1 bits (59), Expect = 2.6
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 134 ITAGAGGTDAQDWADML---LRMYVRWGEKQRYKTRVVEKSLGEEAGIKSAVI 183
I+ G + D+ + + +V E+ + + +A + A++
Sbjct: 114 ISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALV 166
>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli
[TaxId: 562]}
Length = 179
Score = 26.9 bits (58), Expect = 3.5
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 133 SITAGAGGTDAQDWADMLLRMY 154
S++AG + + W +L +
Sbjct: 10 SLSAGYRMSASAAWPALLNDKW 31
>d1jz8a2 b.1.4.1 (A:626-730) beta-Galactosidase, domains 2 and 4
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 26.0 bits (57), Expect = 3.8
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 178 IKSAVIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGAEVMPLLPEESMDVQI 237
+ IEV Y + + E + + SG + + P+ +++
Sbjct: 6 LSGQTIEVTSEYLFRHSDNELLHWMVALD--------GKPLASGEVPLDVAPQGKQLIEL 57
Query: 238 PEEDL 242
PE
Sbjct: 58 PELPQ 62
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional
regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 89
Score = 25.2 bits (55), Expect = 5.5
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 93 TDAG--LLEEAASIIKELNKALDQFE 116
T L A+ ++ L + L+++
Sbjct: 63 TQRAEHLAAAVAAALRALGEGLEEWR 88
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 25.8 bits (56), Expect = 9.5
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 288 IKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGHETS 347
++ LS K ++ +IAE ++AS E ++ + + ++ +
Sbjct: 32 LEVLSG-KERVKIIAEFKKASPSAGDINADASLEDFIRMYDELADAISILTEKHYFKGDP 90
Query: 348 DIVSVMDG--ELEPFIKSYLKYKYSMSLSAS 376
V K + + L++S
Sbjct: 91 AFVRAARNLTCRPILAKDFYIDTVQVKLASS 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.353
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,321,126
Number of extensions: 61124
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 24
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.1 bits)