Query 017010
Match_columns 379
No_of_seqs 204 out of 315
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 1.5E-62 3.2E-67 490.7 13.6 348 27-376 30-402 (415)
2 PRK05467 Fe(II)-dependent oxyg 99.8 2.7E-20 5.9E-25 176.3 14.3 159 153-336 2-182 (226)
3 smart00702 P4Hc Prolyl 4-hydro 99.8 3.9E-19 8.4E-24 159.2 13.0 162 151-330 1-178 (178)
4 PLN00052 prolyl 4-hydroxylase; 99.5 6.8E-14 1.5E-18 138.3 12.6 175 150-336 53-257 (310)
5 PHA02813 hypothetical protein; 99.3 9E-12 1.9E-16 124.3 10.7 154 151-327 5-178 (354)
6 COG3128 PiuC Uncharacterized i 99.1 3.3E-10 7.2E-15 105.1 11.4 164 152-336 3-185 (229)
7 KOG1971 Lysyl hydroxylase [Pos 99.0 8E-11 1.7E-15 119.4 2.3 113 96-216 290-415 (415)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.0 2.9E-10 6.2E-15 92.6 5.1 84 238-330 3-100 (100)
9 PHA02869 C4L/C10L-like gene fa 99.0 3.7E-09 8E-14 107.3 10.9 79 230-326 100-186 (418)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.4 3.7E-07 8E-12 74.1 4.9 79 236-330 4-97 (98)
11 KOG1591 Prolyl 4-hydroxylase a 98.2 9.2E-06 2E-10 80.2 11.2 161 150-333 96-286 (289)
12 PF12851 Tet_JBP: Oxygenase do 97.2 0.00069 1.5E-08 62.0 5.7 72 245-330 83-170 (171)
13 PF05721 PhyH: Phytanoyl-CoA d 97.1 0.0058 1.3E-07 53.7 11.0 169 152-323 5-210 (211)
14 PF09859 Oxygenase-NA: Oxygena 97.1 0.0013 2.9E-08 60.4 6.9 83 237-328 65-169 (173)
15 TIGR02408 ectoine_ThpD ectoine 97.0 0.02 4.4E-07 55.7 14.6 175 151-332 28-249 (277)
16 TIGR01762 chlorin-enz chlorina 96.9 0.026 5.6E-07 55.6 13.9 40 293-332 208-250 (288)
17 PF13661 2OG-FeII_Oxy_4: 2OG-F 96.3 0.0057 1.2E-07 47.8 4.2 40 238-279 15-66 (70)
18 TIGR02466 conserved hypothetic 96.1 0.17 3.6E-06 47.8 13.6 88 235-324 97-193 (201)
19 PF13532 2OG-FeII_Oxy_2: 2OG-F 95.9 0.14 3.1E-06 46.1 11.9 154 152-326 1-192 (194)
20 PF13759 2OG-FeII_Oxy_5: Putat 95.4 0.054 1.2E-06 44.7 6.8 87 237-325 3-98 (101)
21 COG3826 Uncharacterized protei 94.7 0.063 1.4E-06 50.6 5.7 85 236-329 126-232 (236)
22 PF03336 Pox_C4_C10: Poxvirus 93.0 0.21 4.6E-06 50.7 6.1 81 230-326 76-164 (339)
23 PRK15401 alpha-ketoglutarate-d 92.1 1.3 2.7E-05 42.5 9.9 158 147-327 14-210 (213)
24 PLN03001 oxidoreductase, 2OG-F 89.0 0.96 2.1E-05 44.1 6.2 71 246-332 132-214 (262)
25 PLN02276 gibberellin 20-oxidas 88.6 1.4 3.1E-05 44.7 7.4 78 238-331 210-303 (361)
26 PLN02904 oxidoreductase 88.2 1.5 3.2E-05 44.6 7.3 79 238-332 212-306 (357)
27 PLN02365 2-oxoglutarate-depend 87.2 1.7 3.7E-05 43.0 6.8 73 245-330 164-248 (300)
28 PLN02947 oxidoreductase 86.9 2.2 4.7E-05 43.8 7.5 71 246-332 241-323 (374)
29 COG3751 EGL-9 Predicted prolin 86.7 2.2 4.9E-05 41.9 7.2 88 238-332 140-241 (252)
30 PLN02984 oxidoreductase, 2OG-F 86.4 2.4 5.3E-05 42.9 7.6 79 238-332 204-299 (341)
31 PLN00417 oxidoreductase, 2OG-F 85.9 2.4 5.2E-05 42.9 7.2 80 238-332 207-302 (348)
32 PLN02156 gibberellin 2-beta-di 85.8 2.5 5.5E-05 42.7 7.3 80 238-332 182-279 (335)
33 PLN02216 protein SRG1 85.6 2.4 5.2E-05 43.1 7.1 80 238-332 214-309 (357)
34 PLN02912 oxidoreductase, 2OG-F 84.6 3.4 7.5E-05 41.8 7.7 79 238-332 201-295 (348)
35 PLN02750 oxidoreductase, 2OG-F 84.6 2.6 5.7E-05 42.5 6.8 82 238-333 197-294 (345)
36 PLN03178 leucoanthocyanidin di 84.4 2.9 6.3E-05 42.4 7.0 72 245-332 226-309 (360)
37 PLN02485 oxidoreductase 83.9 1.6 3.5E-05 43.5 4.9 74 246-333 204-289 (329)
38 PTZ00273 oxidase reductase; Pr 83.6 2.8 6E-05 41.6 6.4 79 238-332 181-276 (320)
39 PLN02515 naringenin,2-oxogluta 83.4 3 6.5E-05 42.5 6.7 82 238-333 199-296 (358)
40 PLN02254 gibberellin 3-beta-di 82.3 3.1 6.6E-05 42.4 6.2 80 238-332 214-309 (358)
41 PLN02704 flavonol synthase 81.7 4.4 9.5E-05 40.7 7.0 71 246-332 215-297 (335)
42 PLN02299 1-aminocyclopropane-1 81.4 4.5 9.8E-05 40.5 7.0 80 238-332 162-257 (321)
43 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 81.3 2.1 4.6E-05 40.0 4.3 83 237-328 99-194 (195)
44 KOG3710 EGL-Nine (EGLN) protei 80.2 7.5 0.00016 38.2 7.7 90 235-336 144-244 (280)
45 TIGR00568 alkb DNA alkylation 78.8 5.2 0.00011 36.8 6.0 65 235-313 96-168 (169)
46 PLN02403 aminocyclopropanecarb 78.7 7.3 0.00016 38.8 7.4 81 238-333 157-254 (303)
47 PLN02393 leucoanthocyanidin di 77.8 7.8 0.00017 39.4 7.5 80 238-332 217-312 (362)
48 PLN02639 oxidoreductase, 2OG-F 77.3 7.8 0.00017 38.9 7.2 80 238-332 194-289 (337)
49 PLN02758 oxidoreductase, 2OG-F 76.8 7.9 0.00017 39.4 7.2 81 238-332 215-311 (361)
50 KOG3200 Uncharacterized conser 76.2 4.8 0.0001 38.1 4.9 96 149-257 10-109 (224)
51 PLN02997 flavonol synthase 75.6 9.9 0.00022 38.2 7.4 80 238-333 187-282 (325)
52 PLN03002 oxidoreductase, 2OG-F 72.1 7.8 0.00017 38.9 5.7 83 238-332 186-285 (332)
53 KOG0143 Iron/ascorbate family 70.5 10 0.00023 38.1 6.2 81 238-332 180-276 (322)
54 PF05118 Asp_Arg_Hydrox: Aspar 69.5 10 0.00022 34.3 5.3 93 217-327 61-157 (163)
55 COG5285 Protein involved in bi 67.0 27 0.00059 35.2 8.1 98 234-332 114-233 (299)
56 PHA02866 Hypothetical protein; 60.9 92 0.002 31.8 10.5 151 150-326 5-164 (333)
57 PHA02923 hypothetical protein; 54.6 33 0.00072 34.8 6.3 77 232-327 66-142 (315)
58 KOG3889 Predicted gamma-butyro 51.2 23 0.0005 35.9 4.5 80 193-277 136-223 (371)
59 TIGR02409 carnitine_bodg gamma 44.5 55 0.0012 33.1 6.3 31 247-277 185-221 (366)
60 cd00250 CAS_like Clavaminic ac 42.3 50 0.0011 31.4 5.3 32 246-277 93-130 (262)
61 PF10637 Ofd1_CTDD: Oxoglutara 41.5 50 0.0011 32.7 5.2 142 124-277 8-189 (266)
62 KOG3425 Uncharacterized conser 41.1 10 0.00023 33.7 0.4 28 317-352 22-49 (128)
63 PRK13916 plasmid segregation p 41.0 14 0.00031 30.9 1.2 32 54-93 18-49 (97)
64 PF11265 Med25_VWA: Mediator c 39.9 38 0.00082 32.9 4.0 71 202-274 25-107 (226)
65 TIGR02410 carnitine_TMLD trime 39.9 71 0.0015 32.4 6.2 75 193-277 126-213 (362)
66 cd03012 TlpA_like_DipZ_like Tl 31.4 17 0.00036 30.5 0.2 10 345-354 32-41 (126)
67 cd02967 mauD Methylamine utili 30.5 22 0.00047 28.7 0.7 11 346-356 31-41 (114)
68 TIGR00411 redox_disulf_1 small 30.3 23 0.0005 26.8 0.7 13 345-357 8-20 (82)
69 KOG4459 Membrane-associated pr 29.6 18 0.00038 38.6 -0.0 65 259-332 369-435 (471)
70 PRK13264 3-hydroxyanthranilate 29.0 5E+02 0.011 24.5 10.1 124 201-356 7-131 (177)
71 PF02668 TauD: Taurine catabol 28.9 35 0.00076 31.4 1.8 32 247-278 95-132 (258)
72 TIGR00412 redox_disulf_2 small 28.8 21 0.00046 27.8 0.3 11 344-354 6-16 (76)
73 cd02956 ybbN ybbN protein fami 28.4 26 0.00057 27.5 0.8 13 345-357 21-33 (96)
74 PF08534 Redoxin: Redoxin; In 28.3 23 0.00049 30.1 0.4 23 318-356 26-49 (146)
75 PF15379 DUF4606: Domain of un 27.2 65 0.0014 27.9 3.0 16 344-359 30-45 (104)
76 PF13905 Thioredoxin_8: Thiore 26.6 25 0.00054 27.5 0.4 10 344-353 9-18 (95)
77 TIGR02738 TrbB type-F conjugat 26.5 25 0.00055 31.6 0.4 11 346-356 60-70 (153)
78 KOG3844 Predicted component of 26.3 8.4E+02 0.018 26.2 13.1 176 148-340 34-226 (476)
79 cd03000 PDI_a_TMX3 PDIa family 25.7 28 0.00061 28.1 0.5 13 345-357 24-36 (104)
80 cd02993 PDI_a_APS_reductase PD 25.4 31 0.00067 28.3 0.7 13 345-357 30-42 (109)
81 PRK09943 DNA-binding transcrip 25.0 2.7E+02 0.0059 25.1 6.9 62 236-318 109-170 (185)
82 cd02985 TRX_CDSP32 TRX family, 24.4 31 0.00067 28.1 0.5 11 345-355 24-34 (103)
83 cd03010 TlpA_like_DsbE TlpA-li 24.2 34 0.00074 28.3 0.8 11 346-356 35-45 (127)
84 cd03008 TryX_like_RdCVF Trypar 24.1 30 0.00065 31.1 0.4 10 346-355 35-44 (146)
85 cd03005 PDI_a_ERp46 PDIa famil 23.6 33 0.00072 26.9 0.6 11 346-356 26-36 (102)
86 COG0526 TrxA Thiol-disulfide i 23.5 31 0.00067 25.8 0.3 11 344-354 40-50 (127)
87 TIGR03404 bicupin_oxalic bicup 23.2 2.7E+02 0.0058 28.7 7.1 73 236-325 69-141 (367)
88 cd03004 PDI_a_ERdj5_C PDIa fam 23.0 63 0.0014 25.7 2.1 10 345-354 28-37 (104)
89 PF04378 RsmJ: Ribosomal RNA s 22.9 1.4E+02 0.003 29.3 4.8 60 152-212 160-226 (245)
90 KOG3959 2-Oxoglutarate- and ir 22.9 1.2E+02 0.0026 30.2 4.3 103 140-256 61-174 (306)
91 cd02995 PDI_a_PDI_a'_C PDIa fa 22.0 40 0.00087 26.4 0.7 11 345-355 27-37 (104)
92 cd02994 PDI_a_TMX PDIa family, 22.0 41 0.00088 26.7 0.8 11 346-356 26-36 (101)
93 cd02951 SoxW SoxW family; SoxW 21.9 41 0.00089 28.0 0.8 11 346-356 24-34 (125)
94 cd02970 PRX_like2 Peroxiredoxi 21.8 62 0.0014 27.1 1.9 10 346-355 34-43 (149)
95 PF00578 AhpC-TSA: AhpC/TSA fa 21.7 71 0.0015 25.9 2.2 23 319-356 24-46 (124)
96 cd03003 PDI_a_ERdj5_N PDIa fam 21.3 43 0.00093 26.7 0.8 12 345-356 27-38 (101)
97 TIGR02180 GRX_euk Glutaredoxin 20.9 43 0.00093 25.4 0.7 16 345-360 6-21 (84)
98 PRK09381 trxA thioredoxin; Pro 20.7 44 0.00096 27.0 0.8 11 345-355 30-40 (109)
99 cd02949 TRX_NTR TRX domain, no 20.6 43 0.00094 26.7 0.7 11 346-356 23-33 (97)
100 PHA02125 thioredoxin-like prot 20.4 45 0.00097 25.7 0.7 12 345-356 7-18 (75)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-62 Score=490.66 Aligned_cols=348 Identities=34% Similarity=0.485 Sum_probs=337.2
Q ss_pred cccccccCCCCCCCCCCccccccCCCChhHHHHHhhhCCccccCCChHHHHHHHHHHHHHhCCchhhhhhhhhHHHHHHH
Q 017010 27 ASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRI 106 (379)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r~r~~~~~e~~~~I 106 (379)
++.++...||.+|++++|+|+ +|+|+++..++||.|+||.+|++.++.|+|||.|+|.+|+|..++.++..+..|+++|
T Consensus 30 ni~ld~~~~~fq~l~g~~~dv-~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~~ 108 (415)
T KOG1971|consen 30 NITLDHRSRIFQNLNGAYEDV-VLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYRELI 108 (415)
T ss_pred cccccCcCcccccCcCCcCCe-eEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchhh
Confidence 446899999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCccccccCCCCccChhHHHHhhhhcHHHhhhhhcccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCcccc
Q 017010 107 ISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIM 186 (379)
Q Consensus 107 ~~~Y~~lhpdly~l~~e~~l~p~f~~ai~~~~~~~l~~~~~e~~P~Vy~fpvfsp~fC~~LIeE~E~fg~ws~~s~~~i~ 186 (379)
.++||+|+-..|.++|+.++.|+|..+...++++.|+++..|+.|++|+||||++.||++++.|+|+++.|+.+++++++
T Consensus 109 ~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~ 188 (415)
T KOG1971|consen 109 KSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVIT 188 (415)
T ss_pred hhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccceecccc--ChHHHHHHHHHHhhhhhhh---------------------hcCCCccCCCCCccceeEEEEeC
Q 017010 187 RPNTMNKFGAVLDDF--GLETMLDKLMNDFIRPISK---------------------VFFPEVGGSTLDSHHGFVVEYGM 243 (379)
Q Consensus 187 rpn~mN~ygvvLdd~--Gl~~~~~~Ll~~yl~Pl~~---------------------~lfp~~~g~~Ldsh~~FVVrY~~ 243 (379)
|||+|++|+++++++ +++.+..+|.++|+.||++ .+||.+++..|++|++|++.|..
T Consensus 189 ~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~ 268 (415)
T KOG1971|consen 189 RPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSE 268 (415)
T ss_pred CChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccC
Confidence 999999999999999 9999999999999999999 99999999999999999999966
Q ss_pred C-CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCCCcCCccCCccc-
Q 017010 244 D-RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGS- 321 (379)
Q Consensus 244 ~-~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~HeglpVTsG~- 321 (379)
+ .|+++++|+|++++|+|+||++.|+||+++|.+..|+.|..+ .+..|+|+++|.+|+|+||+|.|.|++.++++|+
T Consensus 269 ~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~~ 347 (415)
T KOG1971|consen 269 DNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQP 347 (415)
T ss_pred cCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCCC
Confidence 5 999999999999999999999999999999999999998876 5778999999999999999999999999999999
Q ss_pred eeEEEeecchhhHHHHHhhhhhccccchhhhhhhhHHHHHHHHHHHHHHHhhhcC
Q 017010 322 RVNLLVWCRSSVFRELKKYQKECSSWCAECQREKKERQCISIAATKQELLKRIGN 376 (379)
Q Consensus 322 Ry~LV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (379)
|-+++.||.++.+|+|.+|+.+|+.||+.|..+|++++.++..+||...++..+.
T Consensus 348 ~~nv~~~~~~~~c~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~ 402 (415)
T KOG1971|consen 348 CPNVYWFPISSLCDELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGF 402 (415)
T ss_pred CCceeeehhHHHHHHHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999887653
No 2
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.84 E-value=2.7e-20 Score=176.29 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=115.2
Q ss_pred EEEe-cCCCHHHHHHHHHHHHhcccccccCCc-cccccCCCCccceeccccChHH-HHHHHHHHhhh--hhhhhcCCCcc
Q 017010 153 IYTF-EMLQPRFCEMLLSEVENFERWVHDTRF-RIMRPNTMNKFGAVLDDFGLET-MLDKLMNDFIR--PISKVFFPEVG 227 (379)
Q Consensus 153 Vy~f-pvfsp~fC~~LIeE~E~fg~ws~~s~~-~i~rpn~mN~ygvvLdd~Gl~~-~~~~Ll~~yl~--Pl~~~lfp~~~ 227 (379)
++.+ .|||+++|+++|+.+|+- .|..|... ....+...||..+..++. +.. +++.++ ..+. |+ |.
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~-~~L~~~~l----~~--- 71 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLIL-DALTRNPL----FF--- 71 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHH-HHHhcCch----hh---
Confidence 4556 499999999999999984 47543321 222245677777776766 553 444444 4443 32 21
Q ss_pred CCCCC--ccceeEEEEeCCCCCCccccccCC-------------ceeEEEecC--CcccccceEEecccccccccccccc
Q 017010 228 GSTLD--SHHGFVVEYGMDRDVELGFHVDDS-------------EVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQS 290 (379)
Q Consensus 228 g~~Ld--sh~~FVVrY~~~~d~~L~~H~D~S-------------evTlNI~Ln--~dFeGGgl~F~~~~c~~~v~~~~~~ 290 (379)
...+. .+...+.||.+++ ++++|+|++ .+|++|+|| ++|+||+|.|......
T Consensus 72 sa~lp~~i~~~~f~rY~~G~--~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~--------- 140 (226)
T PRK05467 72 SAALPRKIHPPLFNRYEGGM--SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGE--------- 140 (226)
T ss_pred hhccccccccceEEEECCCC--ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCc---------
Confidence 11111 1233479999886 999999974 589999998 5799999999864321
Q ss_pred cceeeccCCCceEEEecCCCCcCCccCCccceeEEEeecchhhHHH
Q 017010 291 EEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRE 336 (379)
Q Consensus 291 ~e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rss~~R~ 336 (379)
..+++++|.+|+|++..+|+|.|||+|+||+++.|++|. +|+
T Consensus 141 ---~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S~-v~~ 182 (226)
T PRK05467 141 ---HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQSL-VRD 182 (226)
T ss_pred ---EEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHHH-cCC
Confidence 346899999999999999999999999999999999997 565
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.80 E-value=3.9e-19 Score=159.21 Aligned_cols=162 Identities=25% Similarity=0.361 Sum_probs=108.4
Q ss_pred CeEEEec-CCCHHHHHHHHHHHHhcccccccCCcccccc----CCCCccceeccccChHHHHHHHHHHhhhhhhhhcCCC
Q 017010 151 PGIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFRIMRP----NTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPE 225 (379)
Q Consensus 151 P~Vy~fp-vfsp~fC~~LIeE~E~fg~ws~~s~~~i~rp----n~mN~ygvvLdd~Gl~~~~~~Ll~~yl~Pl~~~lfp~ 225 (379)
|+||.++ +|++++|+.||++++..+. ........+.+ ..++.....+++-.-+.+.+.+. +.+..+ ++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~-~~i~~~----~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIR-QRLADF----LGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeecceecCCCCCCHHHHHHH-HHHHHH----HCC
Confidence 7899996 9999999999999998653 21111111111 11222233343321112222222 223232 221
Q ss_pred ccCCCCCccceeEEEEeCCCCCCccccccCC--------ceeEEEecCCcccccceEEecccccccccccccccceeecc
Q 017010 226 VGGSTLDSHHGFVVEYGMDRDVELGFHVDDS--------EVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYS 297 (379)
Q Consensus 226 ~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------evTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~ 297 (379)
..+.........+++|.+++ ++.+|+|.+ .+|++|+||++++||+|.|....+. ....+.
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g~--~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~----------~~~~v~ 142 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPGG--HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLM----------VCATVK 142 (178)
T ss_pred CchhhccCcceEEEEECCCC--cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCc----------cceEEe
Confidence 11111233456799999865 999999965 6999999999999999999986541 123568
Q ss_pred CCCceEEEecC---CCCcCCccCCccceeEEEeecc
Q 017010 298 HVPGYAVLHRG---RHRHGARATTSGSRVNLLVWCR 330 (379)
Q Consensus 298 ~~~G~AllH~G---rh~HeglpVTsG~Ry~LV~W~r 330 (379)
|++|.+|+|+. +++|+|.||++|+||++++|++
T Consensus 143 P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 143 PKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEEC
Confidence 99999999997 5999999999999999999986
No 4
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.53 E-value=6.8e-14 Score=138.30 Aligned_cols=175 Identities=18% Similarity=0.257 Sum_probs=111.6
Q ss_pred CCeEEEec-CCCHHHHHHHHHHHHhcc-cc-c-cc-CCccccccCCCCccceeccccChHHHHHHHHHHhhhhhhhhcCC
Q 017010 150 IPGIYTFE-MLQPRFCEMLLSEVENFE-RW-V-HD-TRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 224 (379)
Q Consensus 150 ~P~Vy~fp-vfsp~fC~~LIeE~E~fg-~w-s-~~-s~~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~yl~Pl~~~lfp 224 (379)
.|.||.++ |||+++|+.||+..+.-. .. + .+ ++... ....+..+++.++.-. +.....+. +.|+-++. .|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~-~s~~RTS~~~~l~~~~-dpvv~~I~-~Ria~~t~--lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSV-MSEVRTSSGMFLDKRQ-DPVVSRIE-ERIAAWTF--LP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccc-cCCCEEecceeecCCC-CHHHHHHH-HHHHHHhC--CC
Confidence 69999995 999999999999887532 21 1 00 01000 0122344555554322 23333332 23333221 12
Q ss_pred CccCCCCCccceeEEEEeCCCCCCccccccC------------CceeEEEecCCcccccceEEeccccccccccc----c
Q 017010 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDD------------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTE----T 288 (379)
Q Consensus 225 ~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~------------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~----~ 288 (379)
--. .-..-|++|++++ .+.+|+|- ...|+.++||+..+||+|.|............ .
T Consensus 128 ~~~-----~E~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~ 200 (310)
T PLN00052 128 EEN-----AENIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSE 200 (310)
T ss_pred ccc-----CcceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhh
Confidence 111 1123499999987 89999992 24899999999999999999975210000000 0
Q ss_pred cccceeeccCCCceEEEecCC---------CCcCCccCCccceeEEEeecchhhHHH
Q 017010 289 QSEEILDYSHVPGYAVLHRGR---------HRHGARATTSGSRVNLLVWCRSSVFRE 336 (379)
Q Consensus 289 ~~~e~~~y~~~~G~AllH~Gr---------h~HeglpVTsG~Ry~LV~W~rss~~R~ 336 (379)
-.+.-..+.|++|.||+|..- -+|+|.||++|++|++..|++...|..
T Consensus 201 c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~ 257 (310)
T PLN00052 201 CAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEH 257 (310)
T ss_pred hhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccC
Confidence 001235689999999999974 599999999999999999999987754
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.31 E-value=9e-12 Score=124.26 Aligned_cols=154 Identities=13% Similarity=0.186 Sum_probs=107.8
Q ss_pred CeEEEecCCCHHH----HHHHHHHHHhcc--cccccCC------ccccccCCCCccceeccccChHHHHHHHHHHhhhhh
Q 017010 151 PGIYTFEMLQPRF----CEMLLSEVENFE--RWVHDTR------FRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPI 218 (379)
Q Consensus 151 P~Vy~fpvfsp~f----C~~LIeE~E~fg--~ws~~s~------~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~yl~Pl 218 (379)
.++.+..+|+... =+.|+.+++ +. .|....- ...+.++.+|+-.|++++. +.+|+.+.. +|.+-
T Consensus 5 ~~~l~~~~F~~~~f~~~k~~l~~~i~-~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~--~~L~erIr~-~Lp~~ 80 (354)
T PHA02813 5 DGIIKVKTFNDDYFNNVKKIIMDMIK-YKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL--DDIFKVIRK-KLLLS 80 (354)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHh-ccccCccccceeccccCceEEccccccceEEEEcCH--HHHHHHHHH-hhHHH
Confidence 4677778888883 344555554 11 2432111 1245677789999999988 777877654 33221
Q ss_pred hhhcCCCccCCCCCccceeEEEEeCCCCCCccccccC--------CceeEEEecCCcccccceEEecccccccccccccc
Q 017010 219 SKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQS 290 (379)
Q Consensus 219 ~~~lfp~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~ 290 (379)
.. -++-+..-+++.+.+| +||.+|+ .|.+|+|. |.+||.|+||+.++||+|.|.-....
T Consensus 81 l~-~~~lv~~V~vnerirf-yrY~kGq--~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t--------- 147 (354)
T PHA02813 81 FE-FPQKISDIILDNTITL-IKYEKGD--FFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT--------- 147 (354)
T ss_pred hc-CCccceeEEEcceEEE-EEECCCc--ccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc---------
Confidence 10 0111111356777775 9999988 89999884 56899999999999999999954221
Q ss_pred cceeeccCCCceEEEecCCCCcCCccCCccceeEEEe
Q 017010 291 EEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLV 327 (379)
Q Consensus 291 ~e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~ 327 (379)
+..+|.+|||.++..|+|.+|++|++|+|++
T Consensus 148 ------sI~~g~dlLFdh~l~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 148 ------IFSTKNDVLFDKTLNHSSDIITDGEKNIALI 178 (354)
T ss_pred ------eEeecceEEEecccccCCcEeccCeEEEEEE
Confidence 1238999999999999999999999999975
No 6
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.14 E-value=3.3e-10 Score=105.07 Aligned_cols=164 Identities=20% Similarity=0.320 Sum_probs=102.2
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcccccccCCcc-ccccCCCCccceeccccChHHHHHHHHHHhhhhhhhhcCC-CccC
Q 017010 152 GIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFR-IMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP-EVGG 228 (379)
Q Consensus 152 ~Vy~fp-vfsp~fC~~LIeE~E~fg~ws~~s~~~-i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~yl~Pl~~~lfp-~~~g 228 (379)
..+-+| |||+..|.++-+.++.- .|+.|.-.. ..-+...||-.+.-+. .++..+..++-+-+.-. .++|. .+..
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A-~w~dGrat~g~q~a~vk~n~qlp~~s-~l~~~vg~~il~al~~~-plff~aALp~ 79 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQA-EWVDGRATQGPQGAQVKNNLQLPQDS-ALARELGNEILQALTAH-PLFFAAALPR 79 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhc-cccccccccCcchhhhhccccCCccc-HHHHHHHHHHHHHHHhc-hhHHHhhccc
Confidence 455565 99999999888888764 576554321 1112334443333222 12222222211111100 01111 0000
Q ss_pred CCCCccceeEEEEeCCCCCCccccccCC--------------ceeEEEecC--CcccccceEEecccccccccccccccc
Q 017010 229 STLDSHHGFVVEYGMDRDVELGFHVDDS--------------EVTLNVCLG--REFSGGELFFRGVRCDKHVNTETQSEE 292 (379)
Q Consensus 229 ~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------------evTlNI~Ln--~dFeGGgl~F~~~~c~~~v~~~~~~~e 292 (379)
..+-. .+-+|..+. .|++|.|+. .++.|+.|+ +||+||+|...+.-+.
T Consensus 80 t~~~P---~Fn~Y~eg~--~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~----------- 143 (229)
T COG3128 80 TCLPP---LFNRYQEGD--FFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGN----------- 143 (229)
T ss_pred ccCCc---hhhhccCCC--cccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccc-----------
Confidence 11111 135787766 899999853 367777776 5999999999987653
Q ss_pred eeeccCCCceEEEecCCCCcCCccCCccceeEEEeecchhhHHH
Q 017010 293 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRE 336 (379)
Q Consensus 293 ~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rss~~R~ 336 (379)
..++.+.|..|++|+.-+|++.|||+|.|+..+.|.+|. +|+
T Consensus 144 -h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl-ir~ 185 (229)
T COG3128 144 -HRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL-IRD 185 (229)
T ss_pred -eEEeccCCCEEEcccccceeccccccCceEEEeeehHHH-hhh
Confidence 245788899999999999999999999999999999987 676
No 7
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8e-11 Score=119.45 Aligned_cols=113 Identities=19% Similarity=0.406 Sum_probs=90.5
Q ss_pred hhhhHHHHHHHhh-cCC--CCCc-cccccC------CCCccChhHHHHhhhhcHHHhhhhhcccCCeEEEecCCCHHHHH
Q 017010 96 VQRHKEYRQRIIS-NYQ--PLHR-ELFTMH------APSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCE 165 (379)
Q Consensus 96 ~~~~~e~~~~I~~-~Y~--~lhp-dly~l~------~e~~l~p~f~~ai~~~~~~~l~~~~~e~~P~Vy~fpvfsp~fC~ 165 (379)
+.|+.++|+++.. .|+ ++++ ++|++. .+.|||+.+.++.+.+ .++.++||+|||||++ .+|+
T Consensus 290 l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg~~~~~a~~------~~~~~~~~nv~~~~~~--~~c~ 361 (415)
T KOG1971|consen 290 LSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSHDPGQAYLHRGYHKHGARA------TIVGQPCPNVYWFPIS--SLCD 361 (415)
T ss_pred ecccccCCeeEeeccccccccCCCchhhhccCcCCCccceecCcchhccccc------cCCCCCCCceeeehhH--HHHH
Confidence 6788999999877 887 5666 899983 2899999999998876 5779999999999999 9999
Q ss_pred HHHHHHHhcccccccCCccccccCC---CCccceeccccChHHHHHHHHHHhhh
Q 017010 166 MLLSEVENFERWVHDTRFRIMRPNT---MNKFGAVLDDFGLETMLDKLMNDFIR 216 (379)
Q Consensus 166 ~LIeE~E~fg~ws~~s~~~i~rpn~---mN~ygvvLdd~Gl~~~~~~Ll~~yl~ 216 (379)
+|++++++|++|++|.+...+.-.+ --...+.+.++|++..|.+++..|++
T Consensus 362 el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 362 ELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred HHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 9999999999999988765322111 01123446679999999999998873
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.03 E-value=2.9e-10 Score=92.56 Aligned_cols=84 Identities=32% Similarity=0.504 Sum_probs=62.8
Q ss_pred EEEEeCCCCCCccccccC-----CceeEEEecCC-c--ccccceEEeccc----ccccccccccccceeeccCCCceEEE
Q 017010 238 VVEYGMDRDVELGFHVDD-----SEVTLNVCLGR-E--FSGGELFFRGVR----CDKHVNTETQSEEILDYSHVPGYAVL 305 (379)
Q Consensus 238 VVrY~~~~d~~L~~H~D~-----SevTlNI~Ln~-d--FeGGgl~F~~~~----c~~~v~~~~~~~e~~~y~~~~G~All 305 (379)
+.+|.++. .+.+|.|. ..+|+.++||+ + ++||+|.|.... +...+ +...+.|.+|.+|+
T Consensus 3 ~~~y~~G~--~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~-------~~~~~~p~~g~~v~ 73 (100)
T PF13640_consen 3 LNRYPPGG--FFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREV-------EDFDIVPKPGRLVI 73 (100)
T ss_dssp EEEEETTE--EEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEE-------GGGSEE-BTTEEEE
T ss_pred EEEECcCC--EEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEE-------EeccccCCCCEEEE
Confidence 56787765 99999999 35999999994 4 799999999753 11100 00112299999999
Q ss_pred ecC-CCCcCCccC-CccceeEEEeecc
Q 017010 306 HRG-RHRHGARAT-TSGSRVNLLVWCR 330 (379)
Q Consensus 306 H~G-rh~HeglpV-TsG~Ry~LV~W~r 330 (379)
|++ ..+|++.|| +.|+|++++.|++
T Consensus 74 F~~~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 74 FPSDNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EESCTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EeCCCCeecCcccCCCCCEEEEEEEEC
Confidence 999 899999999 9999999999974
No 9
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=98.96 E-value=3.7e-09 Score=107.27 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=68.4
Q ss_pred CCCccceeEEEEeCCCCCCccccccC--------CceeEEEecCCcccccceEEecccccccccccccccceeeccCCCc
Q 017010 230 TLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG 301 (379)
Q Consensus 230 ~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G 301 (379)
+++.+.+| +||.+|+ .|.+|.|. |.+||.|+||+.++||+|.|.-..+ ..+.|++|
T Consensus 100 ~lnerirf-yrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~~~~-------------~sI~pksg 163 (418)
T PHA02869 100 TVENTVTL-IMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNN-------------TSVKLKTD 163 (418)
T ss_pred EEcceEEE-EEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEeCCC-------------ceEecCCC
Confidence 67777775 9999988 99999996 5699999999999999999996221 23578999
Q ss_pred eEEEecCCCCcCCccCCccceeEEE
Q 017010 302 YAVLHRGRHRHGARATTSGSRVNLL 326 (379)
Q Consensus 302 ~AllH~Grh~HeglpVTsG~Ry~LV 326 (379)
|||.++..|+|.+|++|.+|+|.
T Consensus 164 --LLFdh~l~Heg~~V~sG~KyVar 186 (418)
T PHA02869 164 --HLFDKTIEHESITVESGRKCVAL 186 (418)
T ss_pred --eEeccccccCCcEeecCeEEEEE
Confidence 99999999999999999999985
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.40 E-value=3.7e-07 Score=74.11 Aligned_cols=79 Identities=25% Similarity=0.266 Sum_probs=57.9
Q ss_pred eeEEEEe-CCCCCCccccccC--CceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC---
Q 017010 236 GFVVEYG-MDRDVELGFHVDD--SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 309 (379)
Q Consensus 236 ~FVVrY~-~~~d~~L~~H~D~--SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--- 309 (379)
..+.+|. ++.+..+++|+|. +.+|++++ .+||||.|....+ ...+.+.++..++..|.
T Consensus 4 ~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~------------~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 4 LRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGE------------WVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp EEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTE------------EEE----TTCEEEEEBHHHH
T ss_pred EEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheecccccc------------ccCccCccceeeeeceeeee
Confidence 4578999 6678899999999 99999998 7899999997542 23456777888888887
Q ss_pred ---------CCcCCccCCccceeEEEeecc
Q 017010 310 ---------HRHGARATTSGSRVNLLVWCR 330 (379)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~r 330 (379)
.+|++.+++.|.|++++.|++
T Consensus 68 ~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 68 ILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp HHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 899999999999999999986
No 11
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=98.23 E-value=9.2e-06 Score=80.21 Aligned_cols=161 Identities=21% Similarity=0.278 Sum_probs=100.3
Q ss_pred CCeEEEec-CCCHHHHHHHHHHHH-hcccccc-cCCccccccCC--CCccceeccccChHHHHHHHHHHhhhhhhhhcCC
Q 017010 150 IPGIYTFE-MLQPRFCEMLLSEVE-NFERWVH-DTRFRIMRPNT--MNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFP 224 (379)
Q Consensus 150 ~P~Vy~fp-vfsp~fC~~LIeE~E-~fg~ws~-~s~~~i~rpn~--mN~ygvvLdd~Gl~~~~~~Ll~~yl~Pl~~~lfp 224 (379)
.|.|+.|+ |+++++|+.||+..+ ....+.- ..+....-... +.--|.-+.+ |-... -..+++.|.-++. +|
T Consensus 96 ~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~-~~~~~-~~~i~~ri~~~T~--l~ 171 (289)
T KOG1591|consen 96 DPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPD-GASPV-VSRIEQRIADLTG--LP 171 (289)
T ss_pred CCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecC-CCCHH-HHHHHHHHHhccC--CC
Confidence 48899995 999999999999766 3333211 01100000000 1111233443 22221 1222333333221 11
Q ss_pred CccCCCCCccceeEEEEeCCCCCCccccccCCc----------------eeEEEecCCcccccceEEecccccccccccc
Q 017010 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE----------------VTLNVCLGREFSGGELFFRGVRCDKHVNTET 288 (379)
Q Consensus 225 ~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se----------------vTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~ 288 (379)
--.+-.| -|++|+.++ ++.+|+|-.. -|+.++|++.=+||+|.|....-.
T Consensus 172 ~e~~E~l-----qVlnYg~Gg--~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~------- 237 (289)
T KOG1591|consen 172 VENGESL-----QVLNYGLGG--HYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGMK------- 237 (289)
T ss_pred cccCccc-----eEEEecCCc--cccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCCc-------
Confidence 1111122 289999877 9999988431 388899999999999999987642
Q ss_pred cccceeeccCCCceEEEecC---------CCCcCCccCCccceeEEEeecchhh
Q 017010 289 QSEEILDYSHVPGYAVLHRG---------RHRHGARATTSGSRVNLLVWCRSSV 333 (379)
Q Consensus 289 ~~~e~~~y~~~~G~AllH~G---------rh~HeglpVTsG~Ry~LV~W~rss~ 333 (379)
..+.|++|.|+++-- +-.|+|.||..|.||+...|+|...
T Consensus 238 -----~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~ 286 (289)
T KOG1591|consen 238 -----PAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKN 286 (289)
T ss_pred -----ccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecc
Confidence 235799999998742 2789999999999999999998643
No 12
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.17 E-value=0.00069 Score=62.04 Aligned_cols=72 Identities=24% Similarity=0.471 Sum_probs=62.5
Q ss_pred CCCCccccccC----CceeEEEecCC-cccccceEEec-----ccccccccccccccceeeccCCCceEEEecCC-CCcC
Q 017010 245 RDVELGFHVDD----SEVTLNVCLGR-EFSGGELFFRG-----VRCDKHVNTETQSEEILDYSHVPGYAVLHRGR-HRHG 313 (379)
Q Consensus 245 ~d~~L~~H~D~----SevTlNI~Ln~-dFeGGgl~F~~-----~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr-h~He 313 (379)
.+.....|+|. ..+|+.+.|+. ||+||-+.+.+ .+.. +.+.+|..|++.|+ .+|+
T Consensus 83 ~nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~--------------~~~~~GtVl~~~~~~~~Hg 148 (171)
T PF12851_consen 83 SNRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVA--------------FAYQPGTVLIFCAKRELHG 148 (171)
T ss_pred eecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEE--------------EecCCCcEEEEcccceeee
Confidence 35578899997 67899999986 49999999998 5533 46889999999999 9999
Q ss_pred CccCCc-----cceeEEEeecc
Q 017010 314 ARATTS-----GSRVNLLVWCR 330 (379)
Q Consensus 314 glpVTs-----G~Ry~LV~W~r 330 (379)
..||.+ |+|+-||.+.|
T Consensus 149 vtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 149 VTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCcccCCCCCCCeEEEEEEEeE
Confidence 999998 99999999876
No 13
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.13 E-value=0.0058 Score=53.72 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred eEEEe-cCCCHHHHHHHHHHHHhc--ccccccCCccccccCCC-Cccceec-cccChHHHHHHHHHH-hhhhhhhhcCCC
Q 017010 152 GIYTF-EMLQPRFCEMLLSEVENF--ERWVHDTRFRIMRPNTM-NKFGAVL-DDFGLETMLDKLMND-FIRPISKVFFPE 225 (379)
Q Consensus 152 ~Vy~f-pvfsp~fC~~LIeE~E~f--g~ws~~s~~~i~rpn~m-N~ygvvL-dd~Gl~~~~~~Ll~~-yl~Pl~~~lfp~ 225 (379)
|...+ .+|+++.|+.|.++++.. ..+..+........... ..+...+ ++. ..+..++.. .+..+++.++..
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~ 81 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQLAKSP---NFYDLFLHPPRILDLVRALLGS 81 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCGCCCH---HHHHHHHTHHHHHHHHHHHHTS
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccch---hhHHHHhhHHHHHHHHHHhhCC
Confidence 45555 599999999999999986 22211111111111111 1111111 111 233444443 455555555421
Q ss_pred ccCCCCCccceeEEEEe-CCCCCC-ccccccC---------CceeEEEecCC-cccccceEEeccccccc-------ccc
Q 017010 226 VGGSTLDSHHGFVVEYG-MDRDVE-LGFHVDD---------SEVTLNVCLGR-EFSGGELFFRGVRCDKH-------VNT 286 (379)
Q Consensus 226 ~~g~~Ldsh~~FVVrY~-~~~d~~-L~~H~D~---------SevTlNI~Ln~-dFeGGgl~F~~~~c~~~-------v~~ 286 (379)
-.......+..+..-+. ++.+.. ..+|.|. ..+|+.|+|.+ .=+.|++.+....-... ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~~ 161 (211)
T PF05721_consen 82 DVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFPE 161 (211)
T ss_dssp SEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCCC
T ss_pred cchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEeecCCcCCCcccccccccc
Confidence 10000000111100122 332334 5899992 24788999975 34566677763211100 000
Q ss_pred cc-----------cccceeeccCCCceEEEecCCCCcCCcc-CCcccee
Q 017010 287 ET-----------QSEEILDYSHVPGYAVLHRGRHRHGARA-TTSGSRV 323 (379)
Q Consensus 287 ~~-----------~~~e~~~y~~~~G~AllH~Grh~Heglp-VTsG~Ry 323 (379)
.. .......+..++|.+|+|.++.+|++.+ .|.+.|-
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 162 EDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSGPNTSDDPRR 210 (211)
T ss_dssp CCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE-B-SSSTEE
T ss_pred cccccccccccccccCceEEeecCCCeEEEEcCCccccCCCCCCcCcCC
Confidence 00 0124456678999999999999999999 5555564
No 14
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.12 E-value=0.0013 Score=60.39 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=61.0
Q ss_pred eEEEEeCCCCCCccccccC-Cc----eeEEEecC---CcccccceEEecccccccccccccccceeeccCCCceEEEecC
Q 017010 237 FVVEYGMDRDVELGFHVDD-SE----VTLNVCLG---REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRG 308 (379)
Q Consensus 237 FVVrY~~~~d~~L~~H~D~-Se----vTlNI~Ln---~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~G 308 (379)
.+.+|+++. .-..|.|- .+ +-+-|.|+ +||+|||...-+.+..- . .+...+.++.|.|+||.-
T Consensus 65 lllrY~~gd--yn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~--Q-----SR~~V~~L~qGda~if~t 135 (173)
T PF09859_consen 65 LLLRYGPGD--YNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPRM--Q-----SRAMVLPLRQGDALIFAT 135 (173)
T ss_pred hhheeCCCC--ccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCCc--c-----CccccCCcCCCCEEEEec
Confidence 368898876 88888883 22 34445554 69999999998765431 1 133456899999999974
Q ss_pred C--------------CCcCCccCCccceeEEEee
Q 017010 309 R--------------HRHGARATTSGSRVNLLVW 328 (379)
Q Consensus 309 r--------------h~HeglpVTsG~Ry~LV~W 328 (379)
+ .+|+.-+|.+|+|+.|-+=
T Consensus 136 ~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgli 169 (173)
T PF09859_consen 136 NHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLI 169 (173)
T ss_pred CCCCcCCCccceecccccccccccccceEEEEEE
Confidence 3 7899999999999998553
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.02 E-value=0.02 Score=55.65 Aligned_cols=175 Identities=15% Similarity=0.200 Sum_probs=90.4
Q ss_pred CeEEEe-cCCCHHHHHHHHHHHHhccccc--ccCCccccccCCCCccceeccccChHHHHHHHH-HHhhhhhhhhcCC-C
Q 017010 151 PGIYTF-EMLQPRFCEMLLSEVENFERWV--HDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLM-NDFIRPISKVFFP-E 225 (379)
Q Consensus 151 P~Vy~f-pvfsp~fC~~LIeE~E~fg~ws--~~s~~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll-~~yl~Pl~~~lfp-~ 225 (379)
.|...+ .+|+++.|+.|.++++...... ......+..+ ..+..+.+++.......+.+|+ ..-|..+++.|+. +
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~ 106 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEP-GSNAVRSIFEVHVLSPILARLVRDPRVANAARQILGSD 106 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecC-CCCceEEEecccccCHHHHHHHcChHHHHHHHHHcCCC
Confidence 366666 5999999999999998764310 0000000001 1122233333333333333332 2233334444432 1
Q ss_pred ccCCCCCccceeEEEEeCC-CCCCccccccCC------------ceeEEEecCCc-ccccceEEeccccccccc-cccc-
Q 017010 226 VGGSTLDSHHGFVVEYGMD-RDVELGFHVDDS------------EVTLNVCLGRE-FSGGELFFRGVRCDKHVN-TETQ- 289 (379)
Q Consensus 226 ~~g~~Ldsh~~FVVrY~~~-~d~~L~~H~D~S------------evTlNI~Ln~d-FeGGgl~F~~~~c~~~v~-~~~~- 289 (379)
+ -+ .+..++.+ ++ ....+.+|.|.+ .+|+-|+|.+- =+-|.|.|....-...+. ....
T Consensus 107 ~---~l-~~~~l~~k--p~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~ 180 (277)
T TIGR02408 107 V---YV-HQSRINMK--PGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETP 180 (277)
T ss_pred e---EE-Eeeeeeec--CCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCcccc
Confidence 1 11 11223333 43 345778899843 37888999763 445778776421110000 0000
Q ss_pred ---------------c-----------cceeeccCCCceEEEecCCCCcCCccCCccceeEEEeecchh
Q 017010 290 ---------------S-----------EEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 290 ---------------~-----------~e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rss 332 (379)
+ .....+..++|.+|+|.+..+|++.+-++..+--.+.-.+++
T Consensus 181 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~ 249 (277)
T TIGR02408 181 RDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNS 249 (277)
T ss_pred chhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEec
Confidence 0 011234569999999999999999998877744344444443
No 16
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=96.85 E-value=0.026 Score=55.61 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=31.6
Q ss_pred eeeccCCCceEEEecCCCCcCCccCCcc--ceeEEEe-ecchh
Q 017010 293 ILDYSHVPGYAVLHRGRHRHGARATTSG--SRVNLLV-WCRSS 332 (379)
Q Consensus 293 ~~~y~~~~G~AllH~Grh~HeglpVTsG--~Ry~LV~-W~rss 332 (379)
......++|.+++|.+..+|++-+-++. .|..+++ |+.++
T Consensus 208 ~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~ 250 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSF 250 (288)
T ss_pred eeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCC
Confidence 3456779999999999999999999884 3777655 66554
No 17
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=96.29 E-value=0.0057 Score=47.82 Aligned_cols=40 Identities=38% Similarity=0.605 Sum_probs=32.2
Q ss_pred EEEEeCCCCCCccccccCC--------ceeEEEecC----CcccccceEEeccc
Q 017010 238 VVEYGMDRDVELGFHVDDS--------EVTLNVCLG----REFSGGELFFRGVR 279 (379)
Q Consensus 238 VVrY~~~~d~~L~~H~D~S--------evTlNI~Ln----~dFeGGgl~F~~~~ 279 (379)
.++|..+ ..+.+|+|+. .+|+.|+|| ++|+||.++|....
T Consensus 15 ~~~~~~g--~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 15 FYRYRRG--DFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred EEEcCCC--CEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 4555554 4999999964 389999999 79999999999753
No 18
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=96.08 E-value=0.17 Score=47.83 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=59.3
Q ss_pred ceeEEEEeCCCCCCcccccc-CCceeEEEecCCcccccceEEecccccccccc-----c--ccccceeeccCCCceEEEe
Q 017010 235 HGFVVEYGMDRDVELGFHVD-DSEVTLNVCLGREFSGGELFFRGVRCDKHVNT-----E--TQSEEILDYSHVPGYAVLH 306 (379)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D-~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~-----~--~~~~e~~~y~~~~G~AllH 306 (379)
...++.+.++. .-..|.- +|-++-..+|.-.=.+|.+.|...+....+.. . ...+....+.|++|..|||
T Consensus 97 ~~W~ni~~~Gg--~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 97 KAWVNILPQGG--THSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred eEeEEEcCCCC--ccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 56788888765 5555544 67899999997544688899986543211100 0 0011233468999999999
Q ss_pred cCCCCcCCccCCcc-ceeE
Q 017010 307 RGRHRHGARATTSG-SRVN 324 (379)
Q Consensus 307 ~Grh~HeglpVTsG-~Ry~ 324 (379)
|+.++|++.|-.+. +|..
T Consensus 175 PS~L~H~v~p~~~~~~RIS 193 (201)
T TIGR02466 175 ESWLRHEVPPNESEEERIS 193 (201)
T ss_pred CCCCceecCCCCCCCCEEE
Confidence 99999999999874 5544
No 19
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=95.88 E-value=0.14 Score=46.06 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=75.2
Q ss_pred eEEEec-CCCHHHHHHHHHHHHhcccccccCCcc--ccc-cCC------------CCccce--eccccChH---HHHHHH
Q 017010 152 GIYTFE-MLQPRFCEMLLSEVENFERWVHDTRFR--IMR-PNT------------MNKFGA--VLDDFGLE---TMLDKL 210 (379)
Q Consensus 152 ~Vy~fp-vfsp~fC~~LIeE~E~fg~ws~~s~~~--i~r-pn~------------mN~ygv--vLdd~Gl~---~~~~~L 210 (379)
|+|.+| +|++++.++|++++.....|....... ... +.. .-+|.. ..+...+. ..+..+
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~~ 80 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSRL 80 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHHH
Confidence 567775 999999999999999654443221110 000 000 001221 22333332 334444
Q ss_pred HHHhhhhhhhhcCCCccCCCCCccceeEEEEeCCCCCCccccccCCc-----eeEEEecCCcccccceEEeccccccccc
Q 017010 211 MNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE-----VTLNVCLGREFSGGELFFRGVRCDKHVN 285 (379)
Q Consensus 211 l~~yl~Pl~~~lfp~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se-----vTlNI~Ln~dFeGGgl~F~~~~c~~~v~ 285 (379)
++....-.. ..++ ..+| ...|-.|.++. .+++|.|+.+ .-+.|+||.. ....|...
T Consensus 81 ~~~~~~~~~--~~~~---~~~n--~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG~~---~~~~f~~~------- 141 (194)
T PF13532_consen 81 LERLVEATG--IPPG---WRPN--QCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLGSS---RVFRFRNK------- 141 (194)
T ss_dssp HHHHHHHHT---SHS---S--S--EEEEEEESSTT---EEEE---TTC-CCSEEEEEEEES----EEEEEEEC-------
T ss_pred HHHHHHHhc--cccC---CCCC--EEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEccC---ceEEEeec-------
Confidence 443221110 1111 1223 45567898866 9999999874 3556666421 11233321
Q ss_pred ccccccceeeccCCCceEEEecCC---CCcCCccCCcc---------ceeEEE
Q 017010 286 TETQSEEILDYSHVPGYAVLHRGR---HRHGARATTSG---------SRVNLL 326 (379)
Q Consensus 286 ~~~~~~e~~~y~~~~G~AllH~Gr---h~HeglpVTsG---------~Ry~LV 326 (379)
...++.+.+....|..++..|. .+|+..++..+ .|.+|.
T Consensus 142 --~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislT 192 (194)
T PF13532_consen 142 --SDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLT 192 (194)
T ss_dssp --GGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEE
T ss_pred --cCCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEE
Confidence 1224567788999999999999 44999999885 688775
No 20
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.45 E-value=0.054 Score=44.73 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=45.3
Q ss_pred eEEEEeCCCCCCccccc-cCCceeEEEecCCcccccceEEecccccccccc-------cccccceeeccCCCceEEEecC
Q 017010 237 FVVEYGMDRDVELGFHV-DDSEVTLNVCLGREFSGGELFFRGVRCDKHVNT-------ETQSEEILDYSHVPGYAVLHRG 308 (379)
Q Consensus 237 FVVrY~~~~d~~L~~H~-D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~-------~~~~~e~~~y~~~~G~AllH~G 308 (379)
.++.|+++. ...+|. .+|.++-..+|.-+=+.|.+.|...+....... .........+.++.|..||||+
T Consensus 3 W~ni~~~g~--~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 3 WANIYRKGG--YNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEE-TT----EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eEEEeCCCC--ccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 455666654 445554 467889999996433778899875432111100 0112345678999999999999
Q ss_pred CCCcCCccCCcc-ceeEE
Q 017010 309 RHRHGARATTSG-SRVNL 325 (379)
Q Consensus 309 rh~HeglpVTsG-~Ry~L 325 (379)
.+.|++.|-.+. .|+.+
T Consensus 81 ~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 81 WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TSEEEE----SSS-EEEE
T ss_pred CCEEeccCcCCCCCEEEE
Confidence 999999999986 56554
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.73 E-value=0.063 Score=50.65 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=59.7
Q ss_pred eeEEEEeCCCCCCcccccc---CCceeEEEe--c---CCcccccceEEecccccccccccccccceeeccCCCceEEEec
Q 017010 236 GFVVEYGMDRDVELGFHVD---DSEVTLNVC--L---GREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR 307 (379)
Q Consensus 236 ~FVVrY~~~~d~~L~~H~D---~SevTlNI~--L---n~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~ 307 (379)
....+|.++. .=..|.| +--|.|.|+ | +.||+|||...-+.+.. +.+ ..-.++.++|.+++|.
T Consensus 126 pLlLqYgpgD--~NcLHQDLYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR--~QS-----r~~vvpLrqG~g~vFa 196 (236)
T COG3826 126 PLLLQYGPGD--YNCLHQDLYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPR--MQS-----RPTVVPLRQGDGVVFA 196 (236)
T ss_pred ceeEEecCCc--cchhhhhhhhceeeeeeEEEeccCCCCcccCceEEEEecccc--ccc-----CCceeeccCCceEEEE
Confidence 3578999976 6677888 223444433 4 47999999988876543 121 2234678999999985
Q ss_pred C--------------CCCcCCccCCccceeEEEeec
Q 017010 308 G--------------RHRHGARATTSGSRVNLLVWC 329 (379)
Q Consensus 308 G--------------rh~HeglpVTsG~Ry~LV~W~ 329 (379)
- ..+||.-.+-||+|+.+-+-.
T Consensus 197 vr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIF 232 (236)
T COG3826 197 VRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIF 232 (236)
T ss_pred eecCcccCccCccccchhcchhhhhcccceeeEEEe
Confidence 2 289999999999999985443
No 22
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=92.97 E-value=0.21 Score=50.72 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCCccceeEEEEeCCCCCCccccccC--------CceeEEEecCCcccccceEEecccccccccccccccceeeccCCCc
Q 017010 230 TLDSHHGFVVEYGMDRDVELGFHVDD--------SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG 301 (379)
Q Consensus 230 ~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G 301 (379)
.++.+..| ++|..+. .|.-|.|. .+++|.++|+..=+||++.|.=..+... + ...+
T Consensus 76 ~V~n~iTf-ikY~kGd--~f~~~~d~~~~~~~n~~~y~LvLyL~~~~~GGktkiyi~~~~~t---------v----I~~~ 139 (339)
T PF03336_consen 76 IVDNTITF-IKYEKGD--FFDNHRDFIKRDSKNCLEYHLVLYLNNPENGGKTKIYIDPNDNT---------V----ISTS 139 (339)
T ss_pred EEcceEEE-EEEccCc--chhhhcccceeccCCceEEEEEEEEeccCCCceEEEEECCCCce---------e----eecc
Confidence 44566665 8898866 89999874 3599999999999999999884433211 1 3558
Q ss_pred eEEEecCCCCcCCccCCccceeEEE
Q 017010 302 YAVLHRGRHRHGARATTSGSRVNLL 326 (379)
Q Consensus 302 ~AllH~Grh~HeglpVTsG~Ry~LV 326 (379)
.-+||.-+..|+...|++|++++++
T Consensus 140 ~DvLFdKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 140 EDVLFDKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred ccEEEeccccccceEeccCeEEEEE
Confidence 8899999999999999999999954
No 23
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=92.11 E-value=1.3 Score=42.49 Aligned_cols=158 Identities=19% Similarity=0.210 Sum_probs=87.8
Q ss_pred cccCCeEEEecCCCHHHHHHHHHHHHhcc---cccccCCcc---ccccCCC-----------Ccccee-c---cccChH-
Q 017010 147 AEPIPGIYTFEMLQPRFCEMLLSEVENFE---RWVHDTRFR---IMRPNTM-----------NKFGAV-L---DDFGLE- 204 (379)
Q Consensus 147 ~e~~P~Vy~fpvfsp~fC~~LIeE~E~fg---~ws~~s~~~---i~rpn~m-----------N~ygvv-L---dd~Gl~- 204 (379)
++..||++.+|=|..+..++|++++++.. .|-+ -..+ .|.+..+ +.|+-- . .-....
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEAVAAQAPFRH-MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHHHHhcCCccc-eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 45678999999889999999999998732 2211 0001 1111111 112211 1 111221
Q ss_pred --HHHHHHHHHhhhhhhhhcCCCccCCCCCccceeEEEEeCCCCCCccccccCCc-----eeEEEecCCcccccceEEec
Q 017010 205 --TMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE-----VTLNVCLGREFSGGELFFRG 277 (379)
Q Consensus 205 --~~~~~Ll~~yl~Pl~~~lfp~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se-----vTlNI~Ln~dFeGGgl~F~~ 277 (379)
..+..|.++... . .++....+| -..|-.|.++. .+++|.|+.| .-++|+||. ...|.=
T Consensus 93 ~P~~l~~L~~~~~~----~--~~~~~~~p~--a~LvN~Y~~G~--~mg~H~D~~E~~~~~pI~SvSLG~-----~~~F~~ 157 (213)
T PRK15401 93 MPASFLALAQRAAA----A--AGFPGFQPD--ACLINRYAPGA--KLSLHQDKDERDFRAPIVSVSLGL-----PAVFQF 157 (213)
T ss_pred chHHHHHHHHHHHH----H--cCCCCCCCC--EEEEEeccCcC--ccccccCCCcccCCCCEEEEeCCC-----CeEEEe
Confidence 134444432211 0 111111223 46688899885 9999999644 346677753 333331
Q ss_pred ccccccccccccccceeeccCCCceEEEecCC---CCcCCccCCcc-------ceeEEEe
Q 017010 278 VRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---HRHGARATTSG-------SRVNLLV 327 (379)
Q Consensus 278 ~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---h~HeglpVTsG-------~Ry~LV~ 327 (379)
..-. ..+....+....|..||..|. .+|+..++..| .|+||-.
T Consensus 158 ~~~~-------~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTF 210 (213)
T PRK15401 158 GGLK-------RSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTF 210 (213)
T ss_pred cccC-------CCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEe
Confidence 0000 012234568899999999988 88999988765 5898853
No 24
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=89.00 E-value=0.96 Score=44.08 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=54.3
Q ss_pred CCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCC------------CcC
Q 017010 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH------------RHG 313 (379)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh------------~He 313 (379)
+..+++|+|.+.+||... ++ .|||.... ..+++.+.+.+|..||.-|.+ .|.
T Consensus 132 ~~g~~~HtD~g~lTlL~q--d~--v~GLqV~~------------~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HR 195 (262)
T PLN03001 132 TLGLQSHSDFGAITLLIQ--DD--VEGLQLLK------------DAEWLMVPPISDAILIIIADQTEIITNGNYKSAQHR 195 (262)
T ss_pred ccCCcCCcCCCeeEEEEe--CC--CCceEEee------------CCeEEECCCCCCcEEEEccHHHHHHhCCccccccce
Confidence 456889999999999654 33 35676542 135778899999999999874 488
Q ss_pred CccCCccceeEEEeecchh
Q 017010 314 ARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 314 glpVTsG~Ry~LV~W~rss 332 (379)
+.......||.+..|+...
T Consensus 196 Vv~~~~~~R~Sia~F~~p~ 214 (262)
T PLN03001 196 AIANANKARLSVATFHDPA 214 (262)
T ss_pred EEcCCCCCEEEEEEEEcCC
Confidence 8765567799999999864
No 25
>PLN02276 gibberellin 20-oxidase
Probab=88.56 E-value=1.4 Score=44.67 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=59.3
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+ +....+++|+|-+.+||... | +.|||.... ..++..+.+.+|..||.-|.
T Consensus 210 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q---d-~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 273 (361)
T PLN02276 210 CNYYPPCQEPELTLGTGPHCDPTSLTILHQ---D-QVGGLQVFV------------DNKWRSVRPRPGALVVNIGDTFMA 273 (361)
T ss_pred eEeCCCCCCcccccCCccccCCceeEEEEe---c-CCCceEEEE------------CCEEEEcCCCCCeEEEEcHHHHHH
Confidence 455644 23456889999999999874 2 466777652 13578889999999999975
Q ss_pred --------CCcCCccCCccceeEEEeecch
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRS 331 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rs 331 (379)
.+|.+..-..+.||.++.|+.-
T Consensus 274 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P 303 (361)
T PLN02276 274 LSNGRYKSCLHRAVVNSERERRSLAFFLCP 303 (361)
T ss_pred HhCCccccccceeecCCCCCEEEEEEEecC
Confidence 6788876667789999999984
No 26
>PLN02904 oxidoreductase
Probab=88.24 E-value=1.5 Score=44.59 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=59.2
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+- .+..+++|+|.+.+||... + +|||..... ..++..+.+.+|..||.-|.
T Consensus 212 l~~YPp~p~~~~~~g~~~HtD~g~lTlL~q---d--~~GLQV~~~-----------~g~Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 212 VNCYPACPEPEIALGMPPHSDFGSLTILLQ---S--SQGLQIMDC-----------NKNWVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEec---C--CCeeeEEeC-----------CCCEEECCCCCCeEEEEccHHHHH
Confidence 5667542 3446789999999999864 2 367876532 13577889999999999985
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+..-....||.+..|+.-+
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~ 306 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLHSLP 306 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEeecCC
Confidence 67888755667899999998654
No 27
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=87.23 E-value=1.7 Score=42.97 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=54.0
Q ss_pred CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC------------CCc
Q 017010 245 RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRH 312 (379)
Q Consensus 245 ~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~H 312 (379)
.+..+++|+|.+.+||... ++ +.|||...... ..++..+.+.+|..||.-|. .+|
T Consensus 164 ~~~g~~~HtD~g~lTlL~q--d~-~~~GLqV~~~~----------~g~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~H 230 (300)
T PLN02365 164 GSSGVQIHTDSGFLTILQD--DE-NVGGLEVMDPS----------SGEFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKH 230 (300)
T ss_pred ccccccCccCCCceEEEec--CC-CcCceEEEECC----------CCeEEecCCCCCeEEEEhhHHHHHHhCCceecccc
Confidence 3456889999999998854 21 25677765320 13578889999999999986 578
Q ss_pred CCccCCccceeEEEeecc
Q 017010 313 GARATTSGSRVNLLVWCR 330 (379)
Q Consensus 313 eglpVTsG~Ry~LV~W~r 330 (379)
.+..-....||.+..|+.
T Consensus 231 RVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 231 RVQCKEATMRISIASFLL 248 (300)
T ss_pred eeEcCCCCCEEEEEEEec
Confidence 887555567999999975
No 28
>PLN02947 oxidoreductase
Probab=86.88 E-value=2.2 Score=43.78 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC------------CCcC
Q 017010 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (379)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (379)
...+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|. .+|.
T Consensus 241 ~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~------------~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HR 304 (374)
T PLN02947 241 TLGMPPHSDYGFLTLLLQ--D--EVEGLQIMH------------AGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHR 304 (374)
T ss_pred ccCCCCccCCCceEEEEe--c--CCCCeeEeE------------CCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccc
Confidence 345789999999999876 2 256777653 13578889999999999987 5688
Q ss_pred CccCCccceeEEEeecchh
Q 017010 314 ARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 314 glpVTsG~Ry~LV~W~rss 332 (379)
+..-..+.||.+..|+.-+
T Consensus 305 Vv~~~~~~R~Sia~F~~P~ 323 (374)
T PLN02947 305 VRVNSTKPRISVASLHSLP 323 (374)
T ss_pred cccCCCCCEEEEEEEecCC
Confidence 8655567899999999854
No 29
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=2.2 Score=41.87 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=68.3
Q ss_pred EEEEeCCCCCCccccccCC------ceeEEEecC---Ccccccce-EEecccccccccccccccceeeccCCCceEEEec
Q 017010 238 VVEYGMDRDVELGFHVDDS------EVTLNVCLG---REFSGGEL-FFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR 307 (379)
Q Consensus 238 VVrY~~~~d~~L~~H~D~S------evTlNI~Ln---~dFeGGgl-~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~ 307 (379)
+..|.++- ++..|-|+. .+|...+++ +.+-||+| .|..... ..+.++...++.|.=+..++|-
T Consensus 140 ~~~y~~G~--~l~~H~D~~~~~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~-----~~~~~~~~~ti~P~fn~lv~F~ 212 (252)
T COG3751 140 ITVYNPGC--FLLKHDDNGRDKDIRLATYVYYLTREWKPEYGGELRLFHSLQK-----NNTAADSFKTIAPVFNSLVFFK 212 (252)
T ss_pred eeEecCCc--eeEeecccCCCccceEEEEEeccCCCCCcCCCCceeecccccc-----cccccccccccCCCCceEEEEE
Confidence 45677765 899998865 478888887 57899999 7765432 1234567778899999999999
Q ss_pred CCCCcCCccCCc----cceeEEEeecchh
Q 017010 308 GRHRHGARATTS----GSRVNLLVWCRSS 332 (379)
Q Consensus 308 Grh~HeglpVTs----G~Ry~LV~W~rss 332 (379)
-+-.|+..+|-. +.|..+-+|.|..
T Consensus 213 s~~~Hs~h~V~~~~~~~~RlsV~GW~r~~ 241 (252)
T COG3751 213 SRPSHSVHSVEEPYAAADRLSVTGWFRRP 241 (252)
T ss_pred ecCCccceeccccccccceEEEeeEEecC
Confidence 998888877765 8899999999875
No 30
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=86.42 E-value=2.4 Score=42.88 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=58.5
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCC---
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH--- 310 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh--- 310 (379)
+.+|-+- ....+++|+|-+.+||... ++ .|||.... ..++..+.+.+|..||.-|..
T Consensus 204 l~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wv~V~p~pgalVVNiGD~Le~ 267 (341)
T PLN02984 204 VYRYPQCSNEAEAPGMEVHTDSSVISILNQ--DE--VGGLEVMK------------DGEWFNVKPIANTLVVNLGDMMQV 267 (341)
T ss_pred EEeCCCCCCcccccCccCccCCCceEEEEe--CC--CCCeeEee------------CCceEECCCCCCeEEEECChhhhh
Confidence 5667552 2456889999999999875 22 36676541 135788999999999999974
Q ss_pred ---------CcCCc-cCCccceeEEEeecchh
Q 017010 311 ---------RHGAR-ATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 311 ---------~Hegl-pVTsG~Ry~LV~W~rss 332 (379)
.|.+. +-....||.++.|+...
T Consensus 268 wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~P~ 299 (341)
T PLN02984 268 ISDDEYKSVLHRVGKRNKKKERYSICYFVFPE 299 (341)
T ss_pred hcCCeeeCCCCccccCCCCCCeEEEEEEecCC
Confidence 49994 44456799999999875
No 31
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=85.91 E-value=2.4 Score=42.90 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=58.8
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+ +.+..+++|+|-+.+||...=+ +.|||.... ..++..+.+.+|..||.-|.
T Consensus 207 l~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~---~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~Le~ 271 (348)
T PLN00417 207 FNMYPPCPRPDKVIGVKPHADGSAFTLLLPDK---DVEGLQFLK------------DGKWYKAPIVPDTILINVGDQMEI 271 (348)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEEecC---CCCceeEeE------------CCeEEECCCCCCcEEEEcChHHHH
Confidence 456644 2345688999999999875421 236677642 13577889999999999886
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+..-..+.||.+..|+.-+
T Consensus 272 ~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 272 MSNGIYKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred HhCCeecccceEEecCCCCCEEEEEEEecCC
Confidence 56888766677899999999854
No 32
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=85.76 E-value=2.5 Score=42.67 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred EEEEeCCC------CCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC--
Q 017010 238 VVEYGMDR------DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR-- 309 (379)
Q Consensus 238 VVrY~~~~------d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr-- 309 (379)
+.+|-+-. +..+++|+|-+.+||... + +.|||.... +..++..+.+.+|..|+.-|.
T Consensus 182 l~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q--d--~v~GLQV~~-----------~~g~Wi~Vpp~pga~VVNiGD~l 246 (335)
T PLN02156 182 MNHYPEKEETPEKVEIGFGEHTDPQLISLLRS--N--DTAGLQICV-----------KDGTWVDVPPDHSSFFVLVGDTL 246 (335)
T ss_pred EEeCCCCCCCccccccCCCCccCCCceEEEEe--C--CCCceEEEe-----------CCCCEEEccCCCCcEEEEhHHHH
Confidence 56675522 345788999999999865 2 346777642 124678899999999999986
Q ss_pred ----------CCcCCccCCccceeEEEeecchh
Q 017010 310 ----------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 ----------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
..|.+..-....||.+..|+.-.
T Consensus 247 ~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 247 QVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred HHHhCCeeeccceeeecCCCCCEEEEEEeecCC
Confidence 57888766667799999999854
No 33
>PLN02216 protein SRG1
Probab=85.57 E-value=2.4 Score=43.05 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=58.8
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCC---
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRH--- 310 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh--- 310 (379)
+.+|-+ +....+++|+|-+.+||...-++ .|||.... ..++..+.+.+|..||.-|.+
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~---v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 278 (357)
T PLN02216 214 MNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNE---VEGLQIKK------------DGKWVSVKPLPNALVVNVGDILEI 278 (357)
T ss_pred EeecCCCCCcccccCccCcccCceEEEEEecCC---CCceeEEE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 455644 23446889999999999764322 35676642 136788899999999999873
Q ss_pred ---------CcCCccCCccceeEEEeecchh
Q 017010 311 ---------RHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 311 ---------~HeglpVTsG~Ry~LV~W~rss 332 (379)
.|.+..-..+.||.++.|+..+
T Consensus 279 ~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~ 309 (357)
T PLN02216 279 ITNGTYRSIEHRGVVNSEKERLSVATFHNTG 309 (357)
T ss_pred hcCCeeeccCceeecCCCCCEEEEEEEecCC
Confidence 4888666677899999999876
No 34
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.64 E-value=3.4 Score=41.79 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=59.5
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+- .+..+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|.
T Consensus 201 l~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q--d--~v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 264 (348)
T PLN02912 201 INYYPPCPQPELTYGLPGHKDANLITVLLQ--D--EVSGLQVFK------------DGKWIAVNPIPNTFIVNLGDQMQV 264 (348)
T ss_pred eeecCCCCChhhcCCcCCCcCCCceEEEEE--C--CCCceEEEE------------CCcEEECCCcCCeEEEEcCHHHHH
Confidence 4556552 2446889999999999865 2 256787752 13577889999999999886
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+.....+.||.+..|+.-.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 265 ISNDKYKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred HhCCEEEcccccccCCCCCCEEEEEEEecCC
Confidence 57888765667899999999865
No 35
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.61 E-value=2.6 Score=42.46 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=60.7
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... +..++..+.+.+|..||.-|.
T Consensus 197 ~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d--~v~GLQV~~~----------~~g~Wi~V~p~pg~~vVNiGD~L~~ 262 (345)
T PLN02750 197 FNHYPPCPAPHLALGVGRHKDGGALTVLAQ--D--DVGGLQISRR----------SDGEWIPVKPIPDAFIINIGNCMQV 262 (345)
T ss_pred EEecCCCCCcccccCcCCCCCCCeEEEEec--C--CCCceEEeec----------CCCeEEEccCCCCeEEEEhHHHHHH
Confidence 4667542 3446889999999999654 2 3477876431 124678889999999999875
Q ss_pred --------CCcCCccCCccceeEEEeecchhh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSSV 333 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss~ 333 (379)
.+|.+.......||.++.|+....
T Consensus 263 ~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~ 294 (345)
T PLN02750 263 WTNDLYWSAEHRVVVNSQKERFSIPFFFFPSH 294 (345)
T ss_pred HhCCeeecccceeccCCCCCEEEEEEeecCCC
Confidence 678888666678999999999763
No 36
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=84.41 E-value=2.9 Score=42.43 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=55.0
Q ss_pred CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC------------CCc
Q 017010 245 RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRH 312 (379)
Q Consensus 245 ~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~H 312 (379)
.+..+++|+|-+.+||... + +.|||.... ..++..+.+.+|..||.-|. -+|
T Consensus 226 ~~~g~~~HTD~g~lTlL~q--d--~v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~H 289 (360)
T PLN03178 226 LALGVEAHTDVSALTFILH--N--MVPGLQVLY------------EGKWVTAKCVPDSIVVHIGDTLEILSNGRYKSILH 289 (360)
T ss_pred cccCcCCccCCCceEEEee--C--CCCceeEeE------------CCEEEEcCCCCCeEEEEccHHHHHHhCCccccccc
Confidence 3456889999999999854 2 256777652 13577889999999999986 578
Q ss_pred CCccCCccceeEEEeecchh
Q 017010 313 GARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 313 eglpVTsG~Ry~LV~W~rss 332 (379)
.+..-..+.||.+..|+.-.
T Consensus 290 RVv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 290 RGLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred eeecCCCCCeEEEEEEecCC
Confidence 87544456799999999975
No 37
>PLN02485 oxidoreductase
Probab=83.91 E-value=1.6 Score=43.48 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC------------CCcC
Q 017010 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (379)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (379)
+..+++|+|-+.+||... ++ +.|||..... ..++..+.+.+|..||.-|. -+|.
T Consensus 204 ~~g~~~HTD~g~lTlL~q--d~-~~~GLqV~~~-----------~g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HR 269 (329)
T PLN02485 204 DIGCGAHTDYGLLTLVNQ--DD-DITALQVRNL-----------SGEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHR 269 (329)
T ss_pred CcccccccCCCeEEEEec--cC-CCCeeeEEcC-----------CCcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCce
Confidence 446889999999999643 11 2367776531 13577889999999999885 4599
Q ss_pred CccCCccceeEEEeecchhh
Q 017010 314 ARATTSGSRVNLLVWCRSSV 333 (379)
Q Consensus 314 glpVTsG~Ry~LV~W~rss~ 333 (379)
+..-....||.++.|+....
T Consensus 270 Vv~~~~~~R~Si~~F~~p~~ 289 (329)
T PLN02485 270 VINNSPKYRVCVAFFYETNF 289 (329)
T ss_pred ecCCCCCCeEEEEEEecCCC
Confidence 98666667999999998753
No 38
>PTZ00273 oxidase reductase; Provisional
Probab=83.60 E-value=2.8 Score=41.63 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=58.0
Q ss_pred EEEEeCC-----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC---
Q 017010 238 VVEYGMD-----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 309 (379)
Q Consensus 238 VVrY~~~-----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--- 309 (379)
+.+|-+. .+..+++|+|-+.+||... + ..|||..... ..++..+.+.+|..||.-|.
T Consensus 181 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d--~~~GLqV~~~-----------~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 181 MKHYPALPQTKKGRTVCGEHTDYGIITLLYQ--D--SVGGLQVRNL-----------SGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred eeecCCCCCccccCcccccccCCCeEEEEec--C--CCCceEEECC-----------CCCEEeCCCCCCeEEEEHHHHHH
Confidence 4667552 2345789999999999864 2 2467876532 13577889999999999874
Q ss_pred ---------CCcCCccCCccceeEEEeecchh
Q 017010 310 ---------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
-+|.+.. ....||.++.|++-+
T Consensus 246 ~~TnG~~kSt~HRVv~-~~~~R~Si~~F~~p~ 276 (320)
T PTZ00273 246 MWSNGRYRSTPHRVVN-TGVERYSMPFFCEPN 276 (320)
T ss_pred HHHCCeeeCCCccccC-CCCCeEEEEEEEcCC
Confidence 6788863 356799999999976
No 39
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=83.45 E-value=3 Score=42.47 Aligned_cols=82 Identities=22% Similarity=0.217 Sum_probs=60.1
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+ +.+..+++|+|.+.+||... + +.|||...... .+++..+.+.+|..||.-|.
T Consensus 199 l~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~~~----------~~~Wi~Vpp~pgalVVNiGD~L~~ 264 (358)
T PLN02515 199 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ--D--QVGGLQATRDG----------GKTWITVQPVEGAFVVNLGDHGHY 264 (358)
T ss_pred EeecCCCCChhhccCCCCCCCCCeEEEEec--C--CCCceEEEECC----------CCeEEECCCCCCeEEEEccHHHHH
Confidence 455654 23446889999999999865 2 24678775321 12578899999999999985
Q ss_pred --------CCcCCccCCccceeEEEeecchhh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSSV 333 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss~ 333 (379)
.+|.+..-..+.||.++.|+.-+.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~ 296 (358)
T PLN02515 265 LSNGRFKNADHQAVVNSNCSRLSIATFQNPAP 296 (358)
T ss_pred HhCCeeeeecceEECCCCCCEEEEEEEecCCC
Confidence 578876666778999999998753
No 40
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=82.29 E-value=3.1 Score=42.42 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=59.1
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+ +....+++|+|-+.+||... ++ .|||..... ..++..+.+.+|..||.-|.
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q--d~--v~GLQV~~~-----------~~~Wi~V~p~pgalVVNiGD~lq~ 278 (358)
T PLN02254 214 LNSYPVCPDPDRAMGLAPHTDSSLLTILYQ--SN--TSGLQVFRE-----------GVGWVTVPPVPGSLVVNVGDLLHI 278 (358)
T ss_pred EecCCCCCCcccccCcCCccCCCcEEEEec--CC--CCCceEECC-----------CCEEEEcccCCCCEEEEhHHHHHH
Confidence 456755 23456899999999999875 32 466776531 12578889999999999985
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
..|.+..-....||.+..|+.-.
T Consensus 279 ~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~ 309 (358)
T PLN02254 279 LSNGRFPSVLHRAVVNKTRHRISVAYFYGPP 309 (358)
T ss_pred HhCCeeccccceeecCCCCCEEEEEEEecCC
Confidence 67888654556799999999854
No 41
>PLN02704 flavonol synthase
Probab=81.75 E-value=4.4 Score=40.70 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC------------CCcC
Q 017010 246 DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR------------HRHG 313 (379)
Q Consensus 246 d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr------------h~He 313 (379)
+-.+++|+|-+.+||... ++ .|||.... ..++..+.+.+|..||.-|. -+|.
T Consensus 215 ~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HR 278 (335)
T PLN02704 215 ALGVVAHTDMSAITILVP--NE--VQGLQVFR------------DDHWFDVKYIPNALVIHIGDQIEILSNGKYKSVLHR 278 (335)
T ss_pred ccCccCccCCcceEEEec--CC--CCceeEeE------------CCEEEeCCCCCCeEEEEechHHHHHhCCeeecccce
Confidence 345889999999999875 33 55777642 13577889999999999986 5688
Q ss_pred CccCCccceeEEEeecchh
Q 017010 314 ARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 314 glpVTsG~Ry~LV~W~rss 332 (379)
+..--...||.++.|+.-.
T Consensus 279 Vv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 279 TTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred eecCCCCCeEEEEEEecCC
Confidence 8654456799999999865
No 42
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=81.42 E-value=4.5 Score=40.50 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=57.5
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+- ....+++|+|.+.+||...=+ +.|||.... ..++..+.+.+|..||.-|.
T Consensus 162 l~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~---~v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~l~~ 226 (321)
T PLN02299 162 VSNYPPCPKPDLVKGLRAHTDAGGIILLFQDD---KVSGLQLLK------------DGEWVDVPPMRHSIVVNLGDQLEV 226 (321)
T ss_pred eEecCCCCCcccccCccCccCCCeEEEEEecC---CCCCcCccc------------CCeEEECCCCCCeEEEEeCHHHHH
Confidence 5667542 233577999999999975321 235565431 13577889999999999986
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
-.|.+..-..+.||.+..|+.-+
T Consensus 227 ~Tng~~kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 227 ITNGKYKSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred HhCCceecccceeecCCCCCEEEEEEEecCC
Confidence 56888755577899999999854
No 43
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=81.31 E-value=2.1 Score=39.98 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=51.4
Q ss_pred eEEEEeCCCCC-----CccccccCCceeEEEecC-CcccccceEEecccccccccccccccceeeccCCCceEEEec-CC
Q 017010 237 FVVEYGMDRDV-----ELGFHVDDSEVTLNVCLG-REFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHR-GR 309 (379)
Q Consensus 237 FVVrY~~~~d~-----~L~~H~D~SevTlNI~Ln-~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~-Gr 309 (379)
+-+|+.+..+. -=+.|.|..++++..+++ ..-+||++......... -...--..+|.+++.. .+
T Consensus 99 Hq~Ri~a~~~~~g~ptPEGiH~DG~d~v~~~li~r~Ni~GG~s~i~~~~~~~---------~~~~~l~~p~d~l~~~D~~ 169 (195)
T PF10014_consen 99 HQIRIIATPDEPGEPTPEGIHRDGVDFVFIHLINRHNIEGGESQIYDNDKEI---------LFFFTLLEPGDTLLVDDRR 169 (195)
T ss_dssp EEEEEETTTS--B--STTSSB--SSSEEEEEEEEEESEEE--EEEEETTSSE---------EEEE---STTEEEEEETTT
T ss_pred EEEEEEEecCccCCcCCCCccCCCCCEEEEEEEcCCCccCceEEEEeCCCCc---------ceEEEecCCCCEEEEeCCc
Confidence 35666664433 357999999999999887 46799999986543211 1122245889999888 66
Q ss_pred CCcCCccCCc------cceeEEEee
Q 017010 310 HRHGARATTS------GSRVNLLVW 328 (379)
Q Consensus 310 h~HeglpVTs------G~Ry~LV~W 328 (379)
.+|++.||+. |.|-+||+-
T Consensus 170 ~~H~vtpI~~~~~~~~g~RDvlvit 194 (195)
T PF10014_consen 170 VWHYVTPIRPVDPSRPGYRDVLVIT 194 (195)
T ss_dssp EEEEE--EEES-TT---EEEEEEEE
T ss_pred ceECCCceecCCCCCcEEEEEEEEe
Confidence 9999999974 888888863
No 44
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=80.22 E-value=7.5 Score=38.18 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=66.1
Q ss_pred ceeEEEEeCCCCCCccccccC-----CceeEEEecCCc----ccccceEEecccccccccccccccceeeccCCCceEEE
Q 017010 235 HGFVVEYGMDRDVELGFHVDD-----SEVTLNVCLGRE----FSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVL 305 (379)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D~-----SevTlNI~Ln~d----FeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~All 305 (379)
.+.|.+|- +.+...-.|+|+ -.+|---+||+. -.||.|+..-... ....+++|.-+..|+
T Consensus 144 kAMVAcYP-GNGtgYVrHVDNP~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~----------~~~adieP~fdrLlf 212 (280)
T KOG3710|consen 144 KAMVACYP-GNGTGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGILRIFPEGS----------TTFADIEPKFDRLLF 212 (280)
T ss_pred eEEEEEec-CCCceeeEeccCCCCCceEEEEEEEcccCcceeeccceeEeccCCC----------CcccccCcCCCeEEE
Confidence 56689995 445566667775 459999999863 4688887654321 123467899999999
Q ss_pred ecCC--CCcCCccCCccceeEEEeecchhhHHH
Q 017010 306 HRGR--HRHGARATTSGSRVNLLVWCRSSVFRE 336 (379)
Q Consensus 306 H~Gr--h~HeglpVTsG~Ry~LV~W~rss~~R~ 336 (379)
|-.. .-||.+|... +||.+.+|.....-|+
T Consensus 213 fwSdrrnPhev~Pa~~-tryaitvwyfda~era 244 (280)
T KOG3710|consen 213 FWSDRRNPHEVQPAYA-TRYAITVWYFDAKERA 244 (280)
T ss_pred EEecCCCccccccccc-cceEEEEEEeccccch
Confidence 9887 5599999987 5899999998765554
No 45
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=78.82 E-value=5.2 Score=36.80 Aligned_cols=65 Identities=25% Similarity=0.268 Sum_probs=41.3
Q ss_pred ceeEEEEeCCCCCCccccccCCce-----eEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC
Q 017010 235 HGFVVEYGMDRDVELGFHVDDSEV-----TLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR 309 (379)
Q Consensus 235 ~~FVVrY~~~~d~~L~~H~D~Sev-----TlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr 309 (379)
...|-.|.++ ..+++|.|+++. -+.|+||.. +.|.= +.. +..+....+....|..+|-.|.
T Consensus 96 ~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~~-----r~F~~-~~~------~~~~~~~~l~L~sGsllvM~G~ 161 (169)
T TIGR00568 96 ACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGLP-----AIFLI-GGL------KRNDPPKRLRLHSGDVVIMGGE 161 (169)
T ss_pred EEEEEeecCC--CccccccccccccCCCCEEEEeCCCC-----EEEEe-cCC------cCCCceEEEEeCCCCEEEECCc
Confidence 4567789887 489999998765 366777642 22321 000 0112234567899999999888
Q ss_pred ---CCcC
Q 017010 310 ---HRHG 313 (379)
Q Consensus 310 ---h~He 313 (379)
.+||
T Consensus 162 sR~~~Hg 168 (169)
T TIGR00568 162 SRLAFHG 168 (169)
T ss_pred hhccccC
Confidence 5554
No 46
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=78.74 E-value=7.3 Score=38.80 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=57.5
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCc-eEEEecCC---
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPG-YAVLHRGR--- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G-~AllH~Gr--- 309 (379)
+.+|.+- ....+++|+|-+.+||...-+ .-|||.... ..++..+.+.+| ..||.-|.
T Consensus 157 l~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~---~v~GLqV~~------------~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 157 VAKYPECPRPELVRGLREHTDAGGIILLLQDD---QVPGLEFLK------------DGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred eEcCCCCCCcccccCccCccCCCeEEEEEecC---CCCceEecc------------CCeEEECCCCCCCEEEEEehHHHH
Confidence 5677552 223578999999999876532 135676531 135677888885 77788775
Q ss_pred ---------CCcCCccCCccceeEEEeecchhh
Q 017010 310 ---------HRHGARATTSGSRVNLLVWCRSSV 333 (379)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~rss~ 333 (379)
.+|.+.....+.||.+..|+....
T Consensus 222 ~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~p~~ 254 (303)
T PLN02403 222 VLSNGRYKSTLHRVMADKNGSRLSIATFYNPAG 254 (303)
T ss_pred HHhCCeeecccceeecCCCCCEEEEEEEEcCCC
Confidence 579988767788999999999753
No 47
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=77.77 E-value=7.8 Score=39.42 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=57.3
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+ +....+++|+|-+.+||...- ++ -|||.... ..++..+.+.+|..||.-|.
T Consensus 217 l~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~-~~--v~GLQV~~------------~g~W~~V~p~pgalVVNiGD~l~~ 281 (362)
T PLN02393 217 VNYYPKCPQPDLTLGLSPHSDPGGMTILLPD-DN--VAGLQVRR------------DDAWITVKPVPDAFIVNIGDQIQV 281 (362)
T ss_pred eeecCCCCCcccccccccccCCceEEEEeeC-CC--CCcceeeE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 456743 234468899999999997541 11 25666542 13577889999999999987
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+..-....||.++.|+.-+
T Consensus 282 ~Tng~~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 282 LSNAIYKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred hcCCeeeccceecccCCCCCEEEEEEEecCC
Confidence 46888654456799999999875
No 48
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=77.28 E-value=7.8 Score=38.95 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=58.1
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+- .+..+++|+|-+.+||... ++ +.|||.... ..++..+.+.+|..||.-|.
T Consensus 194 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~-~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~L~~ 258 (337)
T PLN02639 194 VNYYPPCPEPELTYGLPAHTDPNALTILLQ--DQ-QVAGLQVLK------------DGKWVAVNPHPGAFVINIGDQLQA 258 (337)
T ss_pred EEcCCCCCCcccccCCCCCcCCCceEEEEe--cC-CcCceEeec------------CCeEEeccCCCCeEEEechhHHHH
Confidence 4556553 2345889999999999653 21 235676542 13678889999999999985
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+.....+.||.+..|+.-.
T Consensus 259 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 259 LSNGRYKSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred HhCCeeeccCcccccCCCCCEEEEEEEecCC
Confidence 67888755567899999999854
No 49
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=76.82 E-value=7.9 Score=39.41 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=57.1
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+ +....+++|+|-+.+||...=+. .-|||.... ..++..+.+.+|..|+.-|.
T Consensus 215 ~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~--~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 280 (361)
T PLN02758 215 MNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKG--SCVGLQILK------------DNTWVPVHPVPNALVINIGDTLEV 280 (361)
T ss_pred eecCCCCCCcccccCccCccCCceeEEEEeCCC--CCCCeeeee------------CCEEEeCCCCCCeEEEEccchhhh
Confidence 455643 23446789999999999864211 124566542 13577889999999999986
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+..-....||.+..|+.-.
T Consensus 281 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 311 (361)
T PLN02758 281 LTNGKYKSVEHRAVTNKEKDRLSIVTFYAPS 311 (361)
T ss_pred hcCCeeecccceeecCCCCCEEEEEEEecCC
Confidence 57888755556799999999854
No 50
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.22 E-value=4.8 Score=38.06 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=60.4
Q ss_pred cCCeEEEec-CCCHHHHHHHHHHHHhcc--cccccCCccccccCCCCccceeccccChH-HHHHHHHHHhhhhhhhhcCC
Q 017010 149 PIPGIYTFE-MLQPRFCEMLLSEVENFE--RWVHDTRFRIMRPNTMNKFGAVLDDFGLE-TMLDKLMNDFIRPISKVFFP 224 (379)
Q Consensus 149 ~~P~Vy~fp-vfsp~fC~~LIeE~E~fg--~ws~~s~~~i~rpn~mN~ygvvLdd~Gl~-~~~~~Ll~~yl~Pl~~~lfp 224 (379)
.+|.++-+| +.++++=..++.-+|+-- +|..-. ..-..|||=|...-||- ..+-..+..|+.-|.. -
T Consensus 10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~------NRRLqNyGGvvh~~glipeelP~wLq~~v~kinn---l 80 (224)
T KOG3200|consen 10 SAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLA------NRRLQNYGGVVHKTGLIPEELPPWLQYYVDKINN---L 80 (224)
T ss_pred ccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHH------hhhhhhcCCccccCCcCccccCHHHHHHHHHhhc---c
Confidence 456666665 889999888888888754 352211 12356788888888873 2222222333333321 1
Q ss_pred CccCCCCCccceeEEEEeCCCCCCccccccCCc
Q 017010 225 EVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSE 257 (379)
Q Consensus 225 ~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se 257 (379)
+++++ ...|..|-+|-|++ .+-+|.|.-.
T Consensus 81 glF~s--~~NHVLVNeY~pgq--GImPHtDGPa 109 (224)
T KOG3200|consen 81 GLFKS--PANHVLVNEYLPGQ--GIMPHTDGPA 109 (224)
T ss_pred cccCC--CcceeEeecccCCC--CcCcCCCCCc
Confidence 33444 34577899999988 8999999764
No 51
>PLN02997 flavonol synthase
Probab=75.59 E-value=9.9 Score=38.18 Aligned_cols=80 Identities=20% Similarity=0.148 Sum_probs=57.6
Q ss_pred EEEEeCC----CCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGMD----RDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~~----~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|-+- ....+++|+|-+.+||... ++ -|||.... ..++..+.+.+|..||.-|.
T Consensus 187 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~Le~ 250 (325)
T PLN02997 187 VNFYPPTQDTELVIGAAAHSDMGAIALLIP--NE--VPGLQAFK------------DEQWLDLNYINSAVVVIIGDQLMR 250 (325)
T ss_pred eecCCCCCCcccccCccCccCCCceEEEec--CC--CCCEEEeE------------CCcEEECCCCCCeEEEEechHHHH
Confidence 4556542 2346889999999999864 32 35677652 13577889999999999986
Q ss_pred --------CCcCCccCCccceeEEEeecchhh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSSV 333 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss~ 333 (379)
.+|.+..-....||.+..|+.-..
T Consensus 251 ~TNG~~kSt~HRVv~~~~~~R~Si~fF~~P~~ 282 (325)
T PLN02997 251 MTNGRFKNVLHRAKTDKERLRISWPVFVAPRA 282 (325)
T ss_pred HhCCccccccceeeCCCCCCEEEEEEEecCCC
Confidence 458886544556999999998763
No 52
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=72.06 E-value=7.8 Score=38.92 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=58.4
Q ss_pred EEEEeCCC-----CCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC---
Q 017010 238 VVEYGMDR-----DVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--- 309 (379)
Q Consensus 238 VVrY~~~~-----d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--- 309 (379)
+.+|-+-. +-.+++|+|-+.+||... ++ .|||...... .....+++.+.+.+|..||.-|.
T Consensus 186 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~--v~GLQV~~~~-------~~~~g~Wi~Vpp~pg~~VVNiGD~L~ 254 (332)
T PLN03002 186 LLRYQGISDPSKGIYACGAHSDFGMMTLLAT--DG--VMGLQICKDK-------NAMPQKWEYVPPIKGAFIVNLGDMLE 254 (332)
T ss_pred eeeCCCCCCcccCccccccccCCCeEEEEee--CC--CCceEEecCC-------CCCCCcEEECCCCCCeEEEEHHHHHH
Confidence 56676522 335789999999999854 33 4677764311 00124678889999999999986
Q ss_pred ---------CCcCCccCCccceeEEEeecchh
Q 017010 310 ---------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 ---------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+. +.+..||.+..|+.-.
T Consensus 255 ~wTng~~kSt~HRVv-~~~~~R~Sia~F~~p~ 285 (332)
T PLN03002 255 RWSNGFFKSTLHRVL-GNGQERYSIPFFVEPN 285 (332)
T ss_pred HHhCCeeECcCCeec-CCCCCeeEEEEEecCC
Confidence 458886 3356799999999865
No 53
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=70.51 E-value=10 Score=38.11 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred EEEEeC----CCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC----
Q 017010 238 VVEYGM----DRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR---- 309 (379)
Q Consensus 238 VVrY~~----~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr---- 309 (379)
+.+|.+ +.--.+++|.|.|-+|+.+.-+ +=|||.+.. +..+++.+.|.+|.-|+.-|.
T Consensus 180 ~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~---~V~GLQv~~-----------~dg~Wi~V~P~p~a~vVNiGD~l~~ 245 (322)
T KOG0143|consen 180 LNYYPPCPEPELTLGLGAHTDKSFLTILLQDD---DVGGLQVFT-----------KDGKWIDVPPIPGAFVVNIGDMLQI 245 (322)
T ss_pred EeecCCCcCccccccccCccCcCceEEEEccC---CcCceEEEe-----------cCCeEEECCCCCCCEEEEcccHHhH
Confidence 566755 4455788999999988876432 345666553 124577889999999999864
Q ss_pred --------CCcCCccCCccceeEEEeecchh
Q 017010 310 --------HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 310 --------h~HeglpVTsG~Ry~LV~W~rss 332 (379)
.+|.+.....++||.+..|+-..
T Consensus 246 lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~ 276 (322)
T KOG0143|consen 246 LSNGRYKSVLHRVVVNGEKERISVAFFVFPP 276 (322)
T ss_pred hhCCcccceEEEEEeCCCCceEEEEEEecCC
Confidence 66999999989999998888743
No 54
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=69.51 E-value=10 Score=34.30 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=53.2
Q ss_pred hhhhhcCCCccCC--CCCccceeEEEEeCCCCCCccccccCCceeEE--EecCCcccccceEEecccccccccccccccc
Q 017010 217 PISKVFFPEVGGS--TLDSHHGFVVEYGMDRDVELGFHVDDSEVTLN--VCLGREFSGGELFFRGVRCDKHVNTETQSEE 292 (379)
Q Consensus 217 Pl~~~lfp~~~g~--~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTlN--I~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e 292 (379)
|.+..+.-.+... .+.....++.+-.|+. .+.+|+|.+...+. +.|-.. -++++|.-.+ +
T Consensus 61 P~t~~ll~~lp~~~~~~~~~~~~~s~l~pg~--~I~pH~d~~~~~lR~Hl~L~~p--~~~~~~~v~~------------~ 124 (163)
T PF05118_consen 61 PKTTALLEQLPGVTGGCPLGRVRFSRLPPGT--HIKPHRDPTNLRLRLHLPLIVP--NPGCYIRVGG------------E 124 (163)
T ss_dssp HHCHCCCCCSHHHHCSTTCEEEEEEEEECTE--EEEEE-SS-TTEEEEEEEEC----STTEEEEETT------------E
T ss_pred HHHHHHHHhCcccccccchhhEEEEEECCCC--EECCeeCCCCcceEEEEEEEcC--CCCeEEEECC------------e
Confidence 5555555333111 1233345556666755 99999998764444 444332 2445554211 1
Q ss_pred eeeccCCCceEEEecCCCCcCCccCCccceeEEEe
Q 017010 293 ILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLV 327 (379)
Q Consensus 293 ~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~ 327 (379)
.+.-+.|.++++-.+..|++.--..+.|.+|++
T Consensus 125 --~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 125 --TRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp --EEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred --EEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence 235689999999999999999999999999986
No 55
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.99 E-value=27 Score=35.25 Aligned_cols=98 Identities=18% Similarity=0.099 Sum_probs=60.1
Q ss_pred cceeEEEEeCCCCCC----ccccccCC--------ceeEEEecCC-cccccceEEecccccccccccccc-------cce
Q 017010 234 HHGFVVEYGMDRDVE----LGFHVDDS--------EVTLNVCLGR-EFSGGELFFRGVRCDKHVNTETQS-------EEI 293 (379)
Q Consensus 234 h~~FVVrY~~~~d~~----L~~H~D~S--------evTlNI~Ln~-dFeGGgl~F~~~~c~~~v~~~~~~-------~e~ 293 (379)
++++|..=.++.+.. -.+|.|-. .|.+-|+|-+ .=+-|-|++.-..-+-.+- ...+ +..
T Consensus 114 ~~~~v~~~~~~~~~p~~~~t~~HqD~~~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~-~~r~d~~~y~~~~~ 192 (299)
T COG5285 114 RHGHVLWKMPGFQKPGAVATRWHQDYPLVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVI-PERPDHETYLERNA 192 (299)
T ss_pred cCCeEEEecCCCCCCcccccccccccccccCCccceEEEEEeccccccccCceEEEecccccccC-CCCCCccchhhhcc
Confidence 456676666766655 88999932 2555566643 2335556665322111000 1111 125
Q ss_pred eeccCCCceEEEecCCCCcCCccCCccc--eeEEEeecchh
Q 017010 294 LDYSHVPGYAVLHRGRHRHGARATTSGS--RVNLLVWCRSS 332 (379)
Q Consensus 294 ~~y~~~~G~AllH~Grh~HeglpVTsG~--Ry~LV~W~rss 332 (379)
..+...+|.+|+|.|+++|+|..-++|. +.+.+-|+.+-
T Consensus 193 ~pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 193 VPVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred eeeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEeecc
Confidence 6778899999999999999999999885 34445555554
No 56
>PHA02866 Hypothetical protein; Provisional
Probab=60.91 E-value=92 Score=31.82 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=86.1
Q ss_pred CCeEEEecCCCHHHHHHHHHHHHhc-ccccccCCccccccCCCCccceeccccChHHHHHHHHHHhhhhhhhhcCCCccC
Q 017010 150 IPGIYTFEMLQPRFCEMLLSEVENF-ERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLDKLMNDFIRPISKVFFPEVGG 228 (379)
Q Consensus 150 ~P~Vy~fpvfsp~fC~~LIeE~E~f-g~ws~~s~~~i~rpn~mN~ygvvLdd~Gl~~~~~~Ll~~yl~Pl~~~lfp~~~g 228 (379)
..||.+...|..+|= ...+++... ..|-. |+. -| +.+.-.+..--.+--+...+..+ .++-+.+.-+|++.-
T Consensus 5 ~~~~~~~~~f~~~f~-~i~~~~~~m~~~w~~-s~i--~~--~~~~i~~~~~~~~k~k~~~~v~~-~v~~~~~~~~~~~dv 77 (333)
T PHA02866 5 TDGVLRLKSFRDDFK-GIKEELKFMLNSWED-SDI--LR--HRQFIPCEILVLEKSERTKQVFG-AVKRVLASSLTDYDV 77 (333)
T ss_pred eCCeEEEEEhhhhhh-hHHHHHHHHHhccch-hhh--hh--hccCCceeeeehhhhhhhHHHHH-HHHHHHhccCCCccE
Confidence 468888999998854 333433322 23622 222 11 11111111000111122233332 233333333454321
Q ss_pred CCCCccceeEEEEeCCCCCCcccccc----C----CceeEEEecCCcccccceEEecccccccccccccccceeeccCCC
Q 017010 229 STLDSHHGFVVEYGMDRDVELGFHVD----D----SEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVP 300 (379)
Q Consensus 229 ~~Ldsh~~FVVrY~~~~d~~L~~H~D----~----SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~ 300 (379)
-++.|.. +|+|..+- +|.-|+| + -+++|.++|+.-=+||++.++-..++. ...
T Consensus 78 -~v~~~~t-~vk~~kg~--~fdn~~~~~~~~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~---------------i~~ 138 (333)
T PHA02866 78 -YVCEHLT-IVKCFKGV--GFDNRFSILTEDRHRGREYTLVLHLSSPKNGGKTDVCVGDKTV---------------IST 138 (333)
T ss_pred -EEeeeEE-EEEEeccc--ccccceeEEEeccCCceEEEEEEEEeccccCCceEEEeCCCce---------------Eee
Confidence 3456666 58887654 6666665 3 369999999998899999998444432 233
Q ss_pred ceEEEecCCCCcCCccCCccceeEEE
Q 017010 301 GYAVLHRGRHRHGARATTSGSRVNLL 326 (379)
Q Consensus 301 G~AllH~Grh~HeglpVTsG~Ry~LV 326 (379)
-.=+||--+..|+..-|.+|++++++
T Consensus 139 ~~DvLFDKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 139 ADDFLLEKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred ccceeeeccccccceeeecCcEEEEE
Confidence 45688999999999999999997664
No 57
>PHA02923 hypothetical protein; Provisional
Probab=54.56 E-value=33 Score=34.80 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=58.9
Q ss_pred CccceeEEEEeCCCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCCC
Q 017010 232 DSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHR 311 (379)
Q Consensus 232 dsh~~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~ 311 (379)
+.+-. +++|.++.+-.+ .| |.=++.|.++|+..=+||.+.|...+-. ...-.=+||--+.-
T Consensus 66 ~n~iT-~ikYekgd~~~l-~~-~~~~y~LvLyL~~p~~GGt~i~~~~~t~----------------i~~~~DvLFdKsl~ 126 (315)
T PHA02923 66 SSTIS-FIKYNPFNDTTL-TD-DNMGYYLVIYLNRPKSGKTLIYPTPETV----------------ITSSEDIMFSKSLN 126 (315)
T ss_pred eceEE-EEEEcCCCccee-ec-CceEEEEEEEEeccCCCCeEEEecCCCe----------------Eeeccceeeecccc
Confidence 44555 488999886555 34 6678999999998778999998875522 23345578999999
Q ss_pred cCCccCCccceeEEEe
Q 017010 312 HGARATTSGSRVNLLV 327 (379)
Q Consensus 312 HeglpVTsG~Ry~LV~ 327 (379)
|+..-|.+|++.+++.
T Consensus 127 h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 127 FRFENVKRGYKLVMCS 142 (315)
T ss_pred cceeeeecCcEEEEEE
Confidence 9999999999998655
No 58
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=51.20 E-value=23 Score=35.86 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=51.3
Q ss_pred cccee-ccccChHHHHHHHHHHhhhhhhhhcCCCccCCCCC-ccceeEEEEeCCCCCCccccccCCc------eeEEEec
Q 017010 193 KFGAV-LDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLD-SHHGFVVEYGMDRDVELGFHVDDSE------VTLNVCL 264 (379)
Q Consensus 193 ~ygvv-Ldd~Gl~~~~~~Ll~~yl~Pl~~~lfp~~~g~~Ld-sh~~FVVrY~~~~d~~L~~H~D~Se------vTlNI~L 264 (379)
.||++ +|++.-...-+..+-+.+.|+...+|.+.-..+=+ ++. -.-|. --.|++|+|++- +-+.=||
T Consensus 136 ~YGi~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~~--DTAYt---kl~lg~HTD~TYF~~~~GiQvfHCl 210 (371)
T KOG3889|consen 136 KYGIIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAYE--DTAYT---KLELGPHTDGTYFDQTPGIQVFHCL 210 (371)
T ss_pred heeEEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCccc--cccce---eeeecccCCCceeccCCCceEEEee
Confidence 48887 55555544455555568899999998653211101 110 12243 237999999764 5677788
Q ss_pred CCcccccceEEec
Q 017010 265 GREFSGGELFFRG 277 (379)
Q Consensus 265 n~dFeGGgl~F~~ 277 (379)
.-.=+||++.|-+
T Consensus 211 ~h~gtGG~t~lVD 223 (371)
T KOG3889|consen 211 THAGTGGDTVLVD 223 (371)
T ss_pred cccCCCCceEEEe
Confidence 8888999999963
No 59
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=44.52 E-value=55 Score=33.10 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=25.8
Q ss_pred CCccccccCC------ceeEEEecCCcccccceEEec
Q 017010 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRG 277 (379)
Q Consensus 247 ~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~ 277 (379)
..+.+|+|.+ .+++.-|+...=+||++.|..
T Consensus 185 ~~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 185 GGLPFHTDNPYRDHPPGLQLLHCLESTVEGGDSLFVD 221 (366)
T ss_pred ccccccccCCccCCCCceeeeeecccCCCCcceeeee
Confidence 3688999976 378888997777899999985
No 60
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=42.28 E-value=50 Score=31.35 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.6
Q ss_pred CCCccccccCC------ceeEEEecCCcccccceEEec
Q 017010 246 DVELGFHVDDS------EVTLNVCLGREFSGGELFFRG 277 (379)
Q Consensus 246 d~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~ 277 (379)
...+.+|+|.+ .+++.-|+..+-+||++.|..
T Consensus 93 ~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 93 NTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred cCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 45789999975 689999998778899999986
No 61
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=41.54 E-value=50 Score=32.74 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=57.2
Q ss_pred CccChhHHHHhhhhcHHHhhhhhcccCCeEEEecCCCHHHHHHHHHHHHhccc-----ccccC----CccccccCCCCcc
Q 017010 124 SVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFER-----WVHDT----RFRIMRPNTMNKF 194 (379)
Q Consensus 124 ~~l~p~f~~ai~~~~~~~l~~~~~e~~P~Vy~fpvfsp~fC~~LIeE~E~fg~-----ws~~s----~~~i~rpn~mN~y 194 (379)
+||.|.|++. .+.+.+.....+ ..-|---.||.+++++.|-+.++.-+. +.... +-.+..|-+..+|
T Consensus 8 ~~InP~YL~~---~~~~~i~~~F~e-~S~i~L~~FL~~~~~~~L~~~l~~~e~~~~~~p~~~~~~~~~W~~~gPphK~rY 83 (266)
T PF10637_consen 8 KWINPSYLTP---DTIEQIQEQFEE-ESEIQLENFLKPEKAEQLKEALESQEIEDLSLPQSSKEVEKPWKVAGPPHKRRY 83 (266)
T ss_dssp TTB-HHHCSH---HHHHHHHHHHHH-HSEEEESS-B-HHHHHHHHHHHHHHHHH-S----SGGG--TT-EE-B-TTTEE-
T ss_pred HhcCchhcCH---HHHHHHHHHHHh-cceEeHHHhcCHHHHHHHHHHHHhhccccccCCCcccccCCCceECCCChhhhe
Confidence 4666666543 112222222222 145666789999999999988865331 00000 0122345555566
Q ss_pred ceecccc----------ChHHH-------HHHHH-----HHhhhhhhhhcCCCccCCCCCccceeEEEEeCCCCCCcccc
Q 017010 195 GAVLDDF----------GLETM-------LDKLM-----NDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFH 252 (379)
Q Consensus 195 gvvLdd~----------Gl~~~-------~~~Ll-----~~yl~Pl~~~lfp~~~g~~Ldsh~~FVVrY~~~~d~~L~~H 252 (379)
-.+-..- +++.. +..|+ ..+|+-++.. .+-++...+-|+.+|.|=-|.-.
T Consensus 84 ~~~~~~~~~~~~~~~~~pl~e~~~~~l~~l~~lf~S~aF~~~L~~~TgL--------~l~~~~~~~RRfr~G~dYTLa~~ 155 (266)
T PF10637_consen 84 LYLDPKSEASINSDNKSPLPELPPFLLRELMDLFKSEAFFKWLSNLTGL--------DLTSCQIEARRFRPGLDYTLATD 155 (266)
T ss_dssp EEE-SSSHHHHHHHH---------SHHHHHHHHHHSHHHHHHHHHHHSE--------EE-EEEEEEEEE-TTT-EE--B-
T ss_pred eEeCCcccccccccccccccchhHHHHHHHHHHcCCHHHHHHHHHHHCC--------CCccCceEEEEccCCCCeEEecC
Confidence 5542222 12111 11111 1223222222 33344556778888876556655
Q ss_pred cc--CCceeEEEecC-C------cccccceEEec
Q 017010 253 VD--DSEVTLNVCLG-R------EFSGGELFFRG 277 (379)
Q Consensus 253 ~D--~SevTlNI~Ln-~------dFeGGgl~F~~ 277 (379)
.| +..+-+++||+ . ++-|-++|..+
T Consensus 156 ~~~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym~~ 189 (266)
T PF10637_consen 156 EDEEEPRLDVTLCLTPSKGWESGEVGGYECYMAG 189 (266)
T ss_dssp --EEEEEEEEEEEE---S-TTTTTT---EEEEE-
T ss_pred CCCCceEEEEEEEecCCCCCCCCccccEEEEEcC
Confidence 55 34455555554 2 67777888854
No 62
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.12 E-value=10 Score=33.68 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=20.0
Q ss_pred CCccceeEEEeecchhhHHHHHhhhhhccccchhhh
Q 017010 317 TTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQ 352 (379)
Q Consensus 317 VTsG~Ry~LV~W~rss~~R~~~~y~~~f~~~c~~c~ 352 (379)
+++|.+ |.|+|.=|-.=+ +=.+|||-|.
T Consensus 22 ~~n~~~-ifvlF~gskd~~-------tGqSWCPdCV 49 (128)
T KOG3425|consen 22 VENGKT-IFVLFLGSKDDT-------TGQSWCPDCV 49 (128)
T ss_pred HhCCce-EEEEEecccCCC-------CCCcCCchHH
Confidence 568888 999998775222 2239999994
No 63
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=41.02 E-value=14 Score=30.93 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=24.9
Q ss_pred hhHHHHHhhhCCccccCCChHHHHHHHHHHHHHhCCchhh
Q 017010 54 PLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGER 93 (379)
Q Consensus 54 ~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r 93 (379)
|.+|.-|| +.||-.|-.|.|++|++|+.++--
T Consensus 18 ~~iF~FL~--------~~P~GT~~~~iR~~L~rYI~~~G~ 49 (97)
T PRK13916 18 PQIFDFLE--------NVPRGTKTAHIREALRRYIEEIGE 49 (97)
T ss_pred HHHHHHHH--------HCCCCCccHHHHHHHHHHHHhcCC
Confidence 45566665 678889999999999999876543
No 64
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=39.90 E-value=38 Score=32.93 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHhhhhhhhhcCCCc------cCCCCCccceeEEEEeCCCCCCccccccCCceeEEEec------CCccc
Q 017010 202 GLETMLDKLMNDFIRPISKVFFPEV------GGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCL------GREFS 269 (379)
Q Consensus 202 Gl~~~~~~Ll~~yl~Pl~~~lfp~~------~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTlNI~L------n~dFe 269 (379)
.+-..|+.|...||-|+.+.+..+. ++.......+.||-...+ ..-.+=.+-+.+|-++.. +-+|.
T Consensus 25 algpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d--~~~~~~v~~~g~T~~~~~fl~~L~~I~f~ 102 (226)
T PF11265_consen 25 ALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTAD--CYPEPIVQRSGPTSSPQKFLQWLDAIQFS 102 (226)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccC--CCcccceeccCCcCCHHHHHHHHHccCcC
Confidence 4558999999999999999887421 111122345555544332 244444455666766655 35899
Q ss_pred ccceE
Q 017010 270 GGELF 274 (379)
Q Consensus 270 GGgl~ 274 (379)
|||.-
T Consensus 103 GGG~e 107 (226)
T PF11265_consen 103 GGGFE 107 (226)
T ss_pred CCCcc
Confidence 99854
No 65
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=39.86 E-value=71 Score=32.42 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=0.0
Q ss_pred cccee-ccccChHHHHHHHHHHhhhhhhhhcCCCccCCCCCccceeEEEEeCCC------CCCccccccCCc------ee
Q 017010 193 KFGAV-LDDFGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDR------DVELGFHVDDSE------VT 259 (379)
Q Consensus 193 ~ygvv-Ldd~Gl~~~~~~Ll~~yl~Pl~~~lfp~~~g~~Ldsh~~FVVrY~~~~------d~~L~~H~D~Se------vT 259 (379)
+||++ +.++..+..-..-+.+.+.|+-...|. ..|.|..+++. ...+.+|+|.+- ++
T Consensus 126 ~~G~v~~~g~~~~~~~~~~~a~riG~~r~t~~g----------~~~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~pp~~~ 195 (362)
T TIGR02410 126 KYGFTFVDNVPVTPEATEKLCERISIIRPTHYG----------GFWDFTSDLSKNDTAYTSLAIDMHTDGTYWDETPGLQ 195 (362)
T ss_pred hhCEEEEcCCCCCHHHHHHHHHHhccceecCCC----------CeEEEEecCCCcccccccCCccccccCCCCCCCCcce
Q ss_pred EEEecCCcccccceEEec
Q 017010 260 LNVCLGREFSGGELFFRG 277 (379)
Q Consensus 260 lNI~Ln~dFeGGgl~F~~ 277 (379)
+.-|+-..=+||++.|..
T Consensus 196 ~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 196 LFHCLTHDGTGGETVLVD 213 (362)
T ss_pred eEeeeecCCCCCceeeee
No 66
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=31.40 E-value=17 Score=30.48 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=7.9
Q ss_pred cccchhhhhh
Q 017010 345 SSWCAECQRE 354 (379)
Q Consensus 345 ~~~c~~c~~~ 354 (379)
+.||+.|.++
T Consensus 32 a~~C~~C~~~ 41 (126)
T cd03012 32 TYCCINCLHT 41 (126)
T ss_pred CCCCccHHHH
Confidence 3899999765
No 67
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=30.50 E-value=22 Score=28.74 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.6
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
.||+.|..+-.
T Consensus 31 ~wC~~C~~~~p 41 (114)
T cd02967 31 PTCPVCKKLLP 41 (114)
T ss_pred CCCcchHhHhH
Confidence 89999976643
No 68
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=30.31 E-value=23 Score=26.79 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.6
Q ss_pred cccchhhhhhhhH
Q 017010 345 SSWCAECQREKKE 357 (379)
Q Consensus 345 ~~~c~~c~~~~~~ 357 (379)
+.||+.|..-+..
T Consensus 8 ~~~C~~C~~~~~~ 20 (82)
T TIGR00411 8 SPTCPYCPAAKRV 20 (82)
T ss_pred CCCCcchHHHHHH
Confidence 4899999655544
No 69
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=29.60 E-value=18 Score=38.58 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=48.0
Q ss_pred eEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCC--CCcCCccCCccceeEEEeecchh
Q 017010 259 TLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGR--HRHGARATTSGSRVNLLVWCRSS 332 (379)
Q Consensus 259 TlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Gr--h~HeglpVTsG~Ry~LV~W~rss 332 (379)
....++++||+||++.|....-. .++ ...+++.|.-+-+..+ .-|+..+||+|.|-.+-+|.-.+
T Consensus 369 ~a~~~~~dd~~~~el~~t~~d~~-t~~--------a~~k~~~~re~~~~~g~e~~~~~~~~~kg~e~~~~lw~~~~ 435 (471)
T KOG4459|consen 369 FALLYLNDDFEGGELLFTEPDAK-TYT--------AISKPECGRECAFSSGAENPHGVKAVTKGLECAVALWPTLA 435 (471)
T ss_pred hccHhhcCccccccceecCCccc-chh--------hccccccccchhhhccccCccchhhhhhhhHHhhhcCcccC
Confidence 33445689999999999875422 111 1235677777766655 88999999999999999998765
No 70
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=29.01 E-value=5e+02 Score=24.48 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=65.4
Q ss_pred cChHHHHHHHHHHhhhhhhhhcCCCccCCCCCccceeEEEEeCCCCCCccccccCCceeEEEecCCcccccc-eEEeccc
Q 017010 201 FGLETMLDKLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGE-LFFRGVR 279 (379)
Q Consensus 201 ~Gl~~~~~~Ll~~yl~Pl~~~lfp~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGg-l~F~~~~ 279 (379)
+.|.++++.=.. .|-|.++...+-....|.|..-.+......+|.+.++=.+-+- +|.- +.+.+ .
T Consensus 7 ~n~~~Wieen~~--------~l~pPv~n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE~Fyql-----eG~~~l~v~d-~ 72 (177)
T PRK13264 7 FNLHKWIEEHRH--------LLKPPVGNKQIWQDSDFIVMVVGGPNARTDFHYDPGEEFFYQL-----EGDMYLKVQE-D 72 (177)
T ss_pred ccHHHHHHhhHH--------HhCCCCCCeeeEcCCCEEEEEEccCCcccccccCCCceEEEEE-----CCeEEEEEEc-C
Confidence 556665544333 2334455444322235666655555558999998876443332 2221 11111 0
Q ss_pred ccccccccccccceeeccCCCceEEEecCCCCcCCccCCccceeEEEeecchhhHHHHHhhhhhccccchhhhhhhh
Q 017010 280 CDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGARATTSGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKK 356 (379)
Q Consensus 280 c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~HeglpVTsG~Ry~LV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~ 356 (379)
. +..++...+|.+++.|+...|.-.. ..|+.-.+|==-|.. .-...|--.|..|...--
T Consensus 73 g-----------~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~r~~------~~~d~~~wyc~~c~~~~~ 131 (177)
T PRK13264 73 G-----------KRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERKRPE------GELDGFQWYCDECNHKVH 131 (177)
T ss_pred C-----------ceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeCCCC------CCccceEEECCCCCCeEE
Confidence 0 1112457899999999999998866 355444333222221 112345556888865443
No 71
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=28.86 E-value=35 Score=31.44 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=26.4
Q ss_pred CCccccccCC------ceeEEEecCCcccccceEEecc
Q 017010 247 VELGFHVDDS------EVTLNVCLGREFSGGELFFRGV 278 (379)
Q Consensus 247 ~~L~~H~D~S------evTlNI~Ln~dFeGGgl~F~~~ 278 (379)
..+.+|+|.| .+.+..|+...-+||++.|...
T Consensus 95 ~~l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~ 132 (258)
T PF02668_consen 95 GELPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFADA 132 (258)
T ss_dssp SGEEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEEH
T ss_pred cccccccccCcccCCcceeEEEeeccCCCCCccccccH
Confidence 4699999998 6899999977679999999864
No 72
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=28.85 E-value=21 Score=27.81 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=8.9
Q ss_pred ccccchhhhhh
Q 017010 344 CSSWCAECQRE 354 (379)
Q Consensus 344 f~~~c~~c~~~ 354 (379)
|+.|||-|..-
T Consensus 6 ~a~~C~~C~~~ 16 (76)
T TIGR00412 6 YGTGCANCQMT 16 (76)
T ss_pred ECCCCcCHHHH
Confidence 57999999665
No 73
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=28.36 E-value=26 Score=27.46 Aligned_cols=13 Identities=0% Similarity=-0.163 Sum_probs=9.7
Q ss_pred cccchhhhhhhhH
Q 017010 345 SSWCAECQREKKE 357 (379)
Q Consensus 345 ~~~c~~c~~~~~~ 357 (379)
+.||+.|.+.+..
T Consensus 21 a~wC~~C~~~~~~ 33 (96)
T cd02956 21 APRSPPSKELLPL 33 (96)
T ss_pred CCCChHHHHHHHH
Confidence 3899999766553
No 74
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=28.29 E-value=23 Score=30.13 Aligned_cols=23 Identities=35% Similarity=0.910 Sum_probs=15.6
Q ss_pred CccceeEEEeecchhhHHHHHhhhhhccc-cchhhhhhhh
Q 017010 318 TSGSRVNLLVWCRSSVFRELKKYQKECSS-WCAECQREKK 356 (379)
Q Consensus 318 TsG~Ry~LV~W~rss~~R~~~~y~~~f~~-~c~~c~~~~~ 356 (379)
..|...+++.|. + |||.|..+-.
T Consensus 26 ~~gk~~vv~f~~----------------~~~Cp~C~~~~p 49 (146)
T PF08534_consen 26 FKGKPVVVNFWA----------------SAWCPPCRKELP 49 (146)
T ss_dssp GTTSEEEEEEES----------------TTTSHHHHHHHH
T ss_pred hCCCeEEEEEEc----------------cCCCCcchhhhh
Confidence 456666666653 5 9999976654
No 75
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=27.24 E-value=65 Score=27.90 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=12.6
Q ss_pred ccccchhhhhhhhHHH
Q 017010 344 CSSWCAECQREKKERQ 359 (379)
Q Consensus 344 f~~~c~~c~~~~~~~~ 359 (379)
=|+.|+.|++.+.|=.
T Consensus 30 ~~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 30 NSSQCPSCNKKRAELA 45 (104)
T ss_pred CcccChHHHHHHHHHH
Confidence 4789999998877643
No 76
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=26.65 E-value=25 Score=27.54 Aligned_cols=10 Identities=40% Similarity=1.447 Sum_probs=7.1
Q ss_pred ccccchhhhh
Q 017010 344 CSSWCAECQR 353 (379)
Q Consensus 344 f~~~c~~c~~ 353 (379)
+++||+.|..
T Consensus 9 wa~~c~~c~~ 18 (95)
T PF13905_consen 9 WASWCPPCKK 18 (95)
T ss_dssp E-TTSHHHHH
T ss_pred ECCCCHHHHH
Confidence 3589999954
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=26.46 E-value=25 Score=31.59 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=8.6
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
+|||-|..+.-
T Consensus 60 sWCppCr~e~P 70 (153)
T TIGR02738 60 STCPYCHQFAP 70 (153)
T ss_pred CCChhHHHHHH
Confidence 89999976643
No 78
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=26.28 E-value=8.4e+02 Score=26.22 Aligned_cols=176 Identities=15% Similarity=0.179 Sum_probs=101.3
Q ss_pred ccCCeEEEecCCCHHHHHHHHHHHHhcccccccCCccccccCCCCcccee--ccccChH---HHHHHHHHHhhhhhhhhc
Q 017010 148 EPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAV--LDDFGLE---TMLDKLMNDFIRPISKVF 222 (379)
Q Consensus 148 e~~P~Vy~fpvfsp~fC~~LIeE~E~fg~ws~~s~~~i~rpn~mN~ygvv--Ldd~Gl~---~~~~~Ll~~yl~Pl~~~l 222 (379)
.|.+-+..=+++++.--+..-.|++++..|.- ...++-| .++-|=+ ++.+.+- .+=+-|++++-.-++
T Consensus 34 gPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~-k~tDlyr---~~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~~q--- 106 (476)
T KOG3844|consen 34 GPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTE-KETDLYR---VLQTGDLANLEGLEFPALFSFRDSLYKEARGEIQ--- 106 (476)
T ss_pred CCCcceeeeccCCHHHHHHHHHHHhhccchhh-hcchhhh---eeccccccccccccchhHHHHHHHHHHHHHHHHH---
Confidence 45666655678887777777777777666532 2222211 1122211 2222221 111222222222222
Q ss_pred CCCccCCCCC-ccceeEEEEeCCCCCCccccccCC---ceeEEEecC--C---cccccceEEecccccccccccccccce
Q 017010 223 FPEVGGSTLD-SHHGFVVEYGMDRDVELGFHVDDS---EVTLNVCLG--R---EFSGGELFFRGVRCDKHVNTETQSEEI 293 (379)
Q Consensus 223 fp~~~g~~Ld-sh~~FVVrY~~~~d~~L~~H~D~S---evTlNI~Ln--~---dFeGGgl~F~~~~c~~~v~~~~~~~e~ 293 (379)
.+.|...- ..+.++-+|..+. +|=.|-|-- .+++..+|- + +| ||+|+.....|... .+ .-+
T Consensus 107 --~vtg~~s~sk~Dms~s~Y~kgd--~LL~HDD~ietRriaFilYL~~~Dwds~~-GG~L~Lf~~d~~~~----P~-s~~ 176 (476)
T KOG3844|consen 107 --DVTGGLSTSKIDMSGSYYRKGD--HLLCHDDVIETRRIAFILYLVDPDWDSEY-GGELRLFPDDCPSQ----PK-SVA 176 (476)
T ss_pred --hccCccccceeeeceeeeeccc--eeccccccccceEEEEEEEecCccccccc-CceeEecccccccC----cc-chh
Confidence 12221111 2256688898766 999999954 489999994 2 46 99999988777421 11 123
Q ss_pred eeccCCCceEEEecCC--CCcCCccCCccc-eeEEEeecchhhHHHHHhh
Q 017010 294 LDYSHVPGYAVLHRGR--HRHGARATTSGS-RVNLLVWCRSSVFRELKKY 340 (379)
Q Consensus 294 ~~y~~~~G~AllH~Gr--h~HeglpVTsG~-Ry~LV~W~rss~~R~~~~y 340 (379)
..+.|.-.+-++|.=. -.|.+--|.+-. |..+-+|.+....=+..+|
T Consensus 177 asl~P~~Nql~fFeVsp~SFH~V~Ev~sde~RlSIsGWfH~p~~~ePg~~ 226 (476)
T KOG3844|consen 177 ASLEPQWNQLVFFEVSPISFHDVEEVLSDEPRLSISGWFHFPQIGEPGDG 226 (476)
T ss_pred hccCcccceEEEEEecccchhhHHHHhccCcceeEeeeecCCccCCCCCC
Confidence 4456777777777655 788888887544 7999999998765444433
No 79
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=25.74 E-value=28 Score=28.10 Aligned_cols=13 Identities=23% Similarity=1.017 Sum_probs=9.5
Q ss_pred cccchhhhhhhhH
Q 017010 345 SSWCAECQREKKE 357 (379)
Q Consensus 345 ~~~c~~c~~~~~~ 357 (379)
++||+-|......
T Consensus 24 a~wC~~C~~~~p~ 36 (104)
T cd03000 24 APWCGHCKKLEPV 36 (104)
T ss_pred CCCCHHHHhhChH
Confidence 3899999766543
No 80
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=25.42 E-value=31 Score=28.30 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=10.2
Q ss_pred cccchhhhhhhhH
Q 017010 345 SSWCAECQREKKE 357 (379)
Q Consensus 345 ~~~c~~c~~~~~~ 357 (379)
+.||+-|.+-++.
T Consensus 30 a~wC~~C~~~~~~ 42 (109)
T cd02993 30 APWCPFCQAMEAS 42 (109)
T ss_pred CCCCHHHHHHhHH
Confidence 3899999877654
No 81
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=24.98 E-value=2.7e+02 Score=25.12 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=38.9
Q ss_pred eeEEEEeCCCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCCCcCCc
Q 017010 236 GFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGAR 315 (379)
Q Consensus 236 ~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~Hegl 315 (379)
.+++.|.|+....-..|+..-++-+-+. |.+.+.= +. ..|...+|.++.+++...|.-.
T Consensus 109 ~~~~~~~pg~~~~~~~~h~~~E~~~Vl~-------G~~~~~~-~~-------------~~~~l~~Gd~~~~~~~~~H~~~ 167 (185)
T PRK09943 109 MIFETYQPGTTTGERIKHQGEEIGTVLE-------GEIVLTI-NG-------------QDYHLVAGQSYAINTGIPHSFS 167 (185)
T ss_pred EEEEEccCCCCcccccccCCcEEEEEEE-------eEEEEEE-CC-------------EEEEecCCCEEEEcCCCCeeee
Confidence 3567888877544345666655555442 3333321 10 1246789999999999999877
Q ss_pred cCC
Q 017010 316 ATT 318 (379)
Q Consensus 316 pVT 318 (379)
...
T Consensus 168 n~~ 170 (185)
T PRK09943 168 NTS 170 (185)
T ss_pred CCC
Confidence 754
No 82
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=24.40 E-value=31 Score=28.13 Aligned_cols=11 Identities=0% Similarity=-0.185 Sum_probs=8.5
Q ss_pred cccchhhhhhh
Q 017010 345 SSWCAECQREK 355 (379)
Q Consensus 345 ~~~c~~c~~~~ 355 (379)
+.||+-|....
T Consensus 24 a~wC~~C~~~~ 34 (103)
T cd02985 24 LKHSGPSVKIY 34 (103)
T ss_pred CCCCHhHHHHh
Confidence 48999997554
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=24.24 E-value=34 Score=28.34 Aligned_cols=11 Identities=55% Similarity=1.416 Sum_probs=8.6
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
.||+.|..+..
T Consensus 35 ~~C~~C~~~~~ 45 (127)
T cd03010 35 SWCAPCREEHP 45 (127)
T ss_pred CcCHHHHHHHH
Confidence 79999976543
No 84
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=24.14 E-value=30 Score=31.07 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=8.3
Q ss_pred ccchhhhhhh
Q 017010 346 SWCAECQREK 355 (379)
Q Consensus 346 ~~c~~c~~~~ 355 (379)
+|||.|..+.
T Consensus 35 sWCppCr~e~ 44 (146)
T cd03008 35 VVSPQCQLFA 44 (146)
T ss_pred CCChhHHHHH
Confidence 8999997655
No 85
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=23.57 E-value=33 Score=26.90 Aligned_cols=11 Identities=36% Similarity=1.238 Sum_probs=8.4
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
.||+.|...+.
T Consensus 26 ~wC~~C~~~~p 36 (102)
T cd03005 26 PWCGHCKRLAP 36 (102)
T ss_pred CCCHHHHHhCH
Confidence 79999976544
No 86
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=23.47 E-value=31 Score=25.84 Aligned_cols=11 Identities=36% Similarity=1.271 Sum_probs=8.8
Q ss_pred ccccchhhhhh
Q 017010 344 CSSWCAECQRE 354 (379)
Q Consensus 344 f~~~c~~c~~~ 354 (379)
|+.|||-|...
T Consensus 40 ~~~~C~~C~~~ 50 (127)
T COG0526 40 WAPWCPPCRAE 50 (127)
T ss_pred EcCcCHHHHhh
Confidence 56999999655
No 87
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=23.17 E-value=2.7e+02 Score=28.73 Aligned_cols=73 Identities=15% Similarity=0.073 Sum_probs=44.7
Q ss_pred eeEEEEeCCCCCCccccccCCceeEEEecCCcccccceEEecccccccccccccccceeeccCCCceEEEecCCCCcCCc
Q 017010 236 GFVVEYGMDRDVELGFHVDDSEVTLNVCLGREFSGGELFFRGVRCDKHVNTETQSEEILDYSHVPGYAVLHRGRHRHGAR 315 (379)
Q Consensus 236 ~FVVrY~~~~d~~L~~H~D~SevTlNI~Ln~dFeGGgl~F~~~~c~~~v~~~~~~~e~~~y~~~~G~AllH~Grh~Hegl 315 (379)
...+++.++.-..+-+| .+.|+.+-+. |.+++.=... ..+.+.....+|..+++|....|.-.
T Consensus 69 ~~~~~l~pG~~~~~HwH-~~~E~~yVl~-------G~~~v~~~d~---------~g~~~~~~L~~GD~~~fP~g~~H~~~ 131 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWH-KEAEWAYVLY-------GSCRITAVDE---------NGRNYIDDVGAGDLWYFPPGIPHSLQ 131 (367)
T ss_pred ceEEEEcCCCCCCcccC-CCceEEEEEe-------eEEEEEEEcC---------CCcEEEeEECCCCEEEECCCCeEEEE
Confidence 44677888876677777 4567544442 3332221110 01223235789999999999999988
Q ss_pred cCCccceeEE
Q 017010 316 ATTSGSRVNL 325 (379)
Q Consensus 316 pVTsG~Ry~L 325 (379)
.+..+.++++
T Consensus 132 n~~~~~~~l~ 141 (367)
T TIGR03404 132 GLDEGCEFLL 141 (367)
T ss_pred ECCCCeEEEE
Confidence 8866666443
No 88
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=23.03 E-value=63 Score=25.74 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=7.8
Q ss_pred cccchhhhhh
Q 017010 345 SSWCAECQRE 354 (379)
Q Consensus 345 ~~~c~~c~~~ 354 (379)
+.||+-|..-
T Consensus 28 a~wC~~C~~~ 37 (104)
T cd03004 28 APWCGPCQAL 37 (104)
T ss_pred CCCCHHHHHH
Confidence 4799999654
No 89
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.88 E-value=1.4e+02 Score=29.30 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=33.0
Q ss_pred eEEEecCCCHHHHHHHHHHHHhccc--ccccCCc---cccccCCCCccceec-ccc-ChHHHHHHHHH
Q 017010 152 GIYTFEMLQPRFCEMLLSEVENFER--WVHDTRF---RIMRPNTMNKFGAVL-DDF-GLETMLDKLMN 212 (379)
Q Consensus 152 ~Vy~fpvfsp~fC~~LIeE~E~fg~--ws~~s~~---~i~rpn~mN~ygvvL-dd~-Gl~~~~~~Ll~ 212 (379)
-+.|.|+++.+..+.+++.+.+-+. |-. ..+ +...+..|++-|.++ |-. +|+..+..++.
T Consensus 160 ~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~-~El~v~~~~~~~gm~GSGm~iiNPPw~l~~~l~~~l~ 226 (245)
T PF04378_consen 160 YAIWYPIKDRERVDRFLRALKALGIKKVLR-AELRVRPPDSPRGMNGSGMLIINPPWTLDEELEEILP 226 (245)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHH-SSE-EE-EEEE---SS---S--EEEEEEES--TTHHHHHHHHHH
T ss_pred EEEEeecccHHHHHHHHHHHHhcCCCCeEE-EEEEecCCCCcCceecceEEEEcCCccHHHHHHHHHH
Confidence 3446699999999999998886431 100 111 223356788888764 443 77766665554
No 90
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=22.87 E-value=1.2e+02 Score=30.21 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=59.0
Q ss_pred HHhhhhhcccCCeEEEe-cCCCHHHHHHHHHHHHhcccccccCCccccccCCCCcccee---------ccc-cChHHHHH
Q 017010 140 ASFRSIMAEPIPGIYTF-EMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAV---------LDD-FGLETMLD 208 (379)
Q Consensus 140 ~~l~~~~~e~~P~Vy~f-pvfsp~fC~~LIeE~E~fg~ws~~s~~~i~rpn~mN~ygvv---------Ldd-~Gl~~~~~ 208 (379)
++...-..-|.|||... .++|.++=.+||..++.-. |.. +.. +| -..+||-- ++. .||-..-+
T Consensus 61 e~~~~d~~~p~pG~~lie~Fls~~Eea~l~~~~D~~p-W~~-SQS--GR--RKQdyGPKvNFkk~Klkt~~F~G~P~~~~ 134 (306)
T KOG3959|consen 61 ESVSTDGSIPIPGLTLIENFLSESEEAKLLNMIDTVP-WAQ-SQS--GR--RKQDYGPKVNFKKKKLKTDTFVGMPEYAD 134 (306)
T ss_pred cccccCCccccCCeeehhhhhccchHhHHHHHhccCc-hhh-hcc--cc--cccccCCccchhhhhhccCcccCCchHHH
Confidence 33334456689999999 5999999999999999753 522 111 11 11234432 222 35543222
Q ss_pred HHHHHhhhhhhhhcCCCccCCCCCccceeEEEEeCCCCCCccccccCC
Q 017010 209 KLMNDFIRPISKVFFPEVGGSTLDSHHGFVVEYGMDRDVELGFHVDDS 256 (379)
Q Consensus 209 ~Ll~~yl~Pl~~~lfp~~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S 256 (379)
.++++ + -.||..-| +....---..|.|.++..+.||.||.
T Consensus 135 ~v~rr-m-----~~yp~l~g--fqp~EqCnLeYep~kgsaIdpH~DD~ 174 (306)
T KOG3959|consen 135 MVLRR-M-----SEYPVLKG--FQPFEQCNLEYEPVKGSAIDPHQDDM 174 (306)
T ss_pred HHHHH-h-----hccchhhc--cCcHHHcCcccccccCCccCccccch
Confidence 22221 1 12443333 22222224789999999999999974
No 91
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=22.04 E-value=40 Score=26.38 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=8.2
Q ss_pred cccchhhhhhh
Q 017010 345 SSWCAECQREK 355 (379)
Q Consensus 345 ~~~c~~c~~~~ 355 (379)
+.||+.|..-.
T Consensus 27 ~~~C~~C~~~~ 37 (104)
T cd02995 27 APWCGHCKALA 37 (104)
T ss_pred CCCCHHHHHHh
Confidence 38999996543
No 92
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=22.00 E-value=41 Score=26.72 Aligned_cols=11 Identities=36% Similarity=1.217 Sum_probs=8.3
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
.||+-|.....
T Consensus 26 ~wC~~C~~~~p 36 (101)
T cd02994 26 PWCPACQQLQP 36 (101)
T ss_pred CCCHHHHHHhH
Confidence 79999965444
No 93
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=21.93 E-value=41 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.4
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
.||+-|...+.
T Consensus 24 ~wC~~C~~~~~ 34 (125)
T cd02951 24 PGCPYCDKLKR 34 (125)
T ss_pred CCCHHHHHHHH
Confidence 89999965543
No 94
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=21.79 E-value=62 Score=27.06 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=7.6
Q ss_pred ccchhhhhhh
Q 017010 346 SWCAECQREK 355 (379)
Q Consensus 346 ~~c~~c~~~~ 355 (379)
.||+.|..+-
T Consensus 34 ~~Cp~C~~~~ 43 (149)
T cd02970 34 FGCPFCREYL 43 (149)
T ss_pred CCChhHHHHH
Confidence 6999996553
No 95
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=21.69 E-value=71 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.756 Sum_probs=15.5
Q ss_pred ccceeEEEeecchhhHHHHHhhhhhccccchhhhhhhh
Q 017010 319 SGSRVNLLVWCRSSVFRELKKYQKECSSWCAECQREKK 356 (379)
Q Consensus 319 sG~Ry~LV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~ 356 (379)
.| ++.+|.|..+ .||+.|..+-.
T Consensus 24 ~g-k~~vl~f~~~--------------~~c~~c~~~l~ 46 (124)
T PF00578_consen 24 KG-KPVVLFFWPT--------------AWCPFCQAELP 46 (124)
T ss_dssp TT-SEEEEEEEST--------------TTSHHHHHHHH
T ss_pred CC-CcEEEEEeCc--------------cCccccccchh
Confidence 45 6777777543 59999965443
No 96
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=21.34 E-value=43 Score=26.70 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=8.6
Q ss_pred cccchhhhhhhh
Q 017010 345 SSWCAECQREKK 356 (379)
Q Consensus 345 ~~~c~~c~~~~~ 356 (379)
+.||+.|..-+.
T Consensus 27 a~wC~~C~~~~p 38 (101)
T cd03003 27 SPRCSHCHDLAP 38 (101)
T ss_pred CCCChHHHHhHH
Confidence 389999965443
No 97
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=20.92 E-value=43 Score=25.40 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.0
Q ss_pred cccchhhhhhhhHHHH
Q 017010 345 SSWCAECQREKKERQC 360 (379)
Q Consensus 345 ~~~c~~c~~~~~~~~~ 360 (379)
..|||.|.+-|..-+.
T Consensus 6 ~~~Cp~C~~~~~~L~~ 21 (84)
T TIGR02180 6 KSYCPYCKKAKEILAK 21 (84)
T ss_pred CCCChhHHHHHHHHHH
Confidence 4899999887765444
No 98
>PRK09381 trxA thioredoxin; Provisional
Probab=20.68 E-value=44 Score=26.96 Aligned_cols=11 Identities=27% Similarity=1.066 Sum_probs=8.3
Q ss_pred cccchhhhhhh
Q 017010 345 SSWCAECQREK 355 (379)
Q Consensus 345 ~~~c~~c~~~~ 355 (379)
+.||+.|....
T Consensus 30 ~~~C~~C~~~~ 40 (109)
T PRK09381 30 AEWCGPCKMIA 40 (109)
T ss_pred CCCCHHHHHHh
Confidence 47999996554
No 99
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=20.58 E-value=43 Score=26.69 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=8.3
Q ss_pred ccchhhhhhhh
Q 017010 346 SWCAECQREKK 356 (379)
Q Consensus 346 ~~c~~c~~~~~ 356 (379)
.||+.|...+.
T Consensus 23 ~~C~~C~~~~~ 33 (97)
T cd02949 23 PTCGPCRTLKP 33 (97)
T ss_pred CCChhHHHHHH
Confidence 89999965543
No 100
>PHA02125 thioredoxin-like protein
Probab=20.35 E-value=45 Score=25.70 Aligned_cols=12 Identities=42% Similarity=1.174 Sum_probs=9.0
Q ss_pred cccchhhhhhhh
Q 017010 345 SSWCAECQREKK 356 (379)
Q Consensus 345 ~~~c~~c~~~~~ 356 (379)
+.|||-|.+-+.
T Consensus 7 a~wC~~Ck~~~~ 18 (75)
T PHA02125 7 AEWCANCKMVKP 18 (75)
T ss_pred CCCCHhHHHHHH
Confidence 589999975544
Done!