Query 017011
Match_columns 379
No_of_seqs 136 out of 1383
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 1.7E-83 3.6E-88 609.4 36.5 372 8-379 4-375 (375)
2 PTZ00281 actin; Provisional 100.0 1.1E-82 2.4E-87 605.6 35.2 374 6-379 3-376 (376)
3 PTZ00466 actin-like protein; P 100.0 2.1E-82 4.5E-87 602.4 37.0 372 6-379 9-380 (380)
4 KOG0676 Actin and related prot 100.0 3.8E-82 8.3E-87 580.4 26.6 369 6-379 4-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 1.9E-80 4.2E-85 591.0 35.9 374 6-379 3-378 (378)
6 PTZ00280 Actin-related protein 100.0 1.5E-74 3.3E-79 557.3 36.7 370 8-377 3-408 (414)
7 PF00022 Actin: Actin; InterP 100.0 2.7E-75 5.8E-80 561.9 30.3 368 6-379 1-393 (393)
8 smart00268 ACTIN Actin. ACTIN 100.0 5E-74 1.1E-78 548.8 35.5 369 10-379 2-373 (373)
9 KOG0679 Actin-related protein 100.0 5E-74 1.1E-78 511.6 28.1 371 3-378 5-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 2.7E-71 5.9E-76 529.3 35.5 367 11-377 1-371 (371)
11 KOG0677 Actin-related protein 100.0 1.3E-70 2.8E-75 465.9 22.0 371 7-377 2-386 (389)
12 COG5277 Actin and related prot 100.0 1.1E-67 2.5E-72 502.7 30.3 372 8-379 5-444 (444)
13 KOG0680 Actin-related protein 100.0 3.2E-65 6.8E-70 444.8 25.2 362 8-379 2-399 (400)
14 KOG0681 Actin-related protein 100.0 7.9E-56 1.7E-60 409.4 25.0 367 6-377 20-638 (645)
15 KOG0678 Actin-related protein 100.0 2.2E-50 4.7E-55 352.5 16.7 367 9-376 4-407 (415)
16 KOG0797 Actin-related protein 100.0 6.7E-41 1.5E-45 308.3 21.0 307 67-379 177-615 (618)
17 PRK13930 rod shape-determining 100.0 2.8E-38 6.1E-43 297.9 19.1 307 12-353 11-328 (335)
18 PRK13927 rod shape-determining 100.0 9.4E-37 2E-41 287.3 17.3 307 10-353 6-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.5E-35 3.3E-40 278.6 20.3 311 12-353 5-327 (333)
20 PRK13929 rod-share determining 100.0 6.9E-35 1.5E-39 273.6 19.4 304 11-351 6-324 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.5E-33 3.3E-38 258.9 19.5 305 10-352 2-320 (326)
22 PRK13928 rod shape-determining 100.0 8.8E-32 1.9E-36 253.3 18.2 306 12-353 6-323 (336)
23 COG1077 MreB Actin-like ATPase 100.0 1.2E-27 2.6E-32 211.9 16.8 313 9-352 6-330 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 6.5E-22 1.4E-26 176.5 19.2 209 73-349 29-238 (239)
25 PRK15080 ethanolamine utilizat 99.9 7.1E-20 1.5E-24 166.2 21.3 243 7-351 22-267 (267)
26 CHL00094 dnaK heat shock prote 99.8 2.6E-19 5.6E-24 181.1 17.2 306 10-354 3-377 (621)
27 PTZ00400 DnaK-type molecular c 99.8 3.6E-19 7.7E-24 180.7 17.7 214 104-353 174-415 (663)
28 PLN03184 chloroplast Hsp70; Pr 99.8 3.5E-19 7.5E-24 180.9 17.0 307 9-354 39-414 (673)
29 TIGR01991 HscA Fe-S protein as 99.8 3.9E-19 8.5E-24 178.8 16.9 298 11-354 1-361 (599)
30 PRK01433 hscA chaperone protei 99.8 6.1E-19 1.3E-23 176.4 16.6 297 10-353 20-356 (595)
31 PRK00290 dnaK molecular chaper 99.8 3.9E-19 8.5E-24 180.3 15.3 305 10-353 3-374 (627)
32 TIGR02350 prok_dnaK chaperone 99.8 4.6E-19 9.9E-24 179.1 14.6 304 11-353 2-372 (595)
33 PRK13411 molecular chaperone D 99.8 9.1E-19 2E-23 177.6 16.6 307 10-354 3-377 (653)
34 PRK05183 hscA chaperone protei 99.8 7.8E-19 1.7E-23 177.0 15.3 303 10-353 20-376 (616)
35 PTZ00186 heat shock 70 kDa pre 99.8 3.1E-18 6.7E-23 172.8 19.2 306 9-354 27-402 (657)
36 PRK13410 molecular chaperone D 99.8 1.3E-18 2.9E-23 176.2 15.9 306 10-354 3-377 (668)
37 PTZ00009 heat shock 70 kDa pro 99.8 1.7E-17 3.6E-22 168.7 19.3 215 104-353 140-381 (653)
38 PRK11678 putative chaperone; P 99.7 1.8E-16 3.8E-21 153.5 15.1 180 11-194 2-260 (450)
39 COG0443 DnaK Molecular chapero 99.7 1.4E-15 3E-20 151.6 18.8 308 8-354 4-358 (579)
40 PF00012 HSP70: Hsp70 protein; 99.6 2.2E-16 4.8E-21 160.6 7.4 234 84-353 114-376 (602)
41 PRK09472 ftsA cell division pr 99.6 8.3E-15 1.8E-19 141.7 16.5 201 117-353 165-388 (420)
42 TIGR01174 ftsA cell division p 99.6 2.2E-14 4.7E-19 137.1 17.2 174 116-323 156-340 (371)
43 COG0849 ftsA Cell division ATP 99.6 1.3E-13 2.8E-18 130.5 19.2 199 117-353 164-380 (418)
44 KOG0100 Molecular chaperones G 99.5 7.3E-13 1.6E-17 120.7 16.7 222 104-354 172-412 (663)
45 KOG0101 Molecular chaperones H 99.4 5.1E-11 1.1E-15 116.5 18.4 215 105-354 144-384 (620)
46 TIGR01175 pilM type IV pilus a 99.3 1.5E-10 3.3E-15 109.8 19.3 156 116-323 141-308 (348)
47 PF11104 PilM_2: Type IV pilus 99.3 1.4E-10 3.1E-15 109.4 16.3 187 82-323 86-300 (340)
48 KOG0104 Molecular chaperones G 99.2 3.3E-11 7.2E-16 117.6 10.2 190 8-199 21-275 (902)
49 PRK13917 plasmid segregation p 99.2 3.4E-10 7.3E-15 106.6 16.6 289 10-353 3-336 (344)
50 TIGR03739 PRTRC_D PRTRC system 99.2 1.1E-10 2.3E-15 109.3 12.8 183 14-200 2-215 (320)
51 COG4820 EutJ Ethanolamine util 99.1 4.8E-11 1E-15 99.2 5.1 204 74-348 62-269 (277)
52 KOG0102 Molecular chaperones m 99.1 7.1E-09 1.5E-13 98.3 16.9 218 105-353 161-401 (640)
53 KOG0103 Molecular chaperones H 99.0 1.2E-08 2.7E-13 99.5 15.4 235 103-376 136-406 (727)
54 COG4972 PilM Tfp pilus assembl 98.9 8.1E-08 1.8E-12 86.4 17.2 146 126-322 156-312 (354)
55 PF06406 StbA: StbA protein; 98.7 2.5E-07 5.3E-12 86.5 12.4 110 89-199 81-212 (318)
56 TIGR00241 CoA_E_activ CoA-subs 98.5 4.3E-06 9.3E-11 75.4 15.7 152 153-350 92-248 (248)
57 PRK10719 eutA reactivating fac 98.5 1.6E-05 3.5E-10 76.0 18.4 159 9-192 6-184 (475)
58 TIGR03286 methan_mark_15 putat 98.2 1.9E-05 4.1E-10 74.5 11.2 48 297-352 355-402 (404)
59 TIGR03192 benz_CoA_bzdQ benzoy 98.1 5.7E-05 1.2E-09 68.5 12.2 49 296-352 238-287 (293)
60 TIGR02261 benz_CoA_red_D benzo 97.9 0.00019 4.2E-09 64.2 12.5 50 299-351 213-262 (262)
61 COG1924 Activator of 2-hydroxy 97.9 0.00041 8.8E-09 64.2 13.9 46 300-353 345-390 (396)
62 PF06277 EutA: Ethanolamine ut 97.9 0.0012 2.6E-08 63.4 17.5 155 10-187 4-176 (473)
63 PF08841 DDR: Diol dehydratase 96.9 0.0021 4.6E-08 57.1 5.7 205 121-347 98-325 (332)
64 TIGR02259 benz_CoA_red_A benzo 96.7 0.0056 1.2E-07 57.6 7.7 52 297-351 381-432 (432)
65 PRK13317 pantothenate kinase; 96.4 0.035 7.6E-07 50.7 10.6 52 296-352 221-273 (277)
66 PF01869 BcrAD_BadFG: BadF/Bad 96.3 0.013 2.7E-07 53.6 7.0 48 301-351 224-271 (271)
67 TIGR00555 panK_eukar pantothen 96.2 0.055 1.2E-06 49.2 10.4 68 277-349 209-278 (279)
68 PRK11031 guanosine pentaphosph 95.9 0.06 1.3E-06 53.6 10.5 85 107-193 80-171 (496)
69 TIGR03706 exo_poly_only exopol 95.9 0.057 1.2E-06 50.1 9.5 83 108-193 75-164 (300)
70 COG0248 GppA Exopolyphosphatas 95.5 0.029 6.2E-07 55.2 6.0 79 113-193 83-168 (492)
71 PRK10854 exopolyphosphatase; P 95.3 0.09 1.9E-06 52.6 9.0 84 107-192 85-175 (513)
72 PF14450 FtsA: Cell division p 95.1 0.13 2.7E-06 40.7 7.8 57 155-222 2-69 (120)
73 TIGR03123 one_C_unchar_1 proba 95.0 0.19 4.2E-06 46.6 9.8 28 149-176 125-152 (318)
74 TIGR00744 ROK_glcA_fam ROK fam 94.9 1.4 3E-05 41.0 15.6 52 123-176 89-147 (318)
75 COG1548 Predicted transcriptio 94.4 0.17 3.6E-06 44.8 7.1 23 151-173 129-151 (330)
76 PRK09557 fructokinase; Reviewe 93.9 5.4 0.00012 36.8 17.5 67 278-351 232-299 (301)
77 PF02541 Ppx-GppA: Ppx/GppA ph 91.8 0.35 7.6E-06 44.4 5.7 79 112-193 65-151 (285)
78 PF01968 Hydantoinase_A: Hydan 90.9 0.23 5E-06 45.8 3.5 28 148-175 73-100 (290)
79 COG2441 Predicted butyrate kin 89.5 0.38 8.2E-06 43.0 3.4 47 152-198 163-213 (374)
80 COG4819 EutA Ethanolamine util 87.7 5.5 0.00012 36.9 9.6 158 8-188 4-179 (473)
81 PF07318 DUF1464: Protein of u 87.0 5.9 0.00013 37.1 9.7 50 300-353 263-315 (343)
82 PRK13321 pantothenate kinase; 86.7 3.3 7.2E-05 37.3 7.9 19 11-29 2-20 (256)
83 PRK00976 hypothetical protein; 83.1 15 0.00031 34.3 10.3 28 147-175 144-171 (326)
84 PRK13324 pantothenate kinase; 81.6 18 0.00038 32.7 10.2 18 11-28 2-19 (258)
85 KOG1794 N-Acetylglucosamine ki 80.8 46 0.00099 30.5 13.6 91 84-175 47-143 (336)
86 PF03309 Pan_kinase: Type III 80.4 14 0.0003 32.1 8.9 18 12-29 2-19 (206)
87 COG1521 Pantothenate kinase ty 79.8 19 0.00041 32.3 9.6 18 11-28 2-19 (251)
88 KOG2708 Predicted metalloprote 78.6 3.2 6.9E-05 36.3 4.1 49 149-199 121-170 (336)
89 TIGR00671 baf pantothenate kin 78.3 21 0.00046 31.9 9.6 18 12-29 2-19 (243)
90 PF08735 DUF1786: Putative pyr 76.4 33 0.00071 30.8 9.9 46 129-175 138-190 (254)
91 PRK13318 pantothenate kinase; 75.7 51 0.0011 29.7 11.5 18 11-28 2-19 (258)
92 COG0145 HyuA N-methylhydantoin 68.7 4.5 9.7E-05 41.8 3.2 29 147-175 271-301 (674)
93 PRK13326 pantothenate kinase; 68.0 61 0.0013 29.3 10.0 20 10-29 7-26 (262)
94 smart00842 FtsA Cell division 61.6 28 0.0006 29.6 6.3 24 74-98 36-59 (187)
95 PRK05082 N-acetylmannosamine k 57.8 14 0.00031 33.8 4.2 51 300-351 236-286 (291)
96 PF03702 UPF0075: Uncharacteri 56.8 5.9 0.00013 37.7 1.5 26 298-323 285-310 (364)
97 KOG1385 Nucleoside phosphatase 54.7 76 0.0016 30.6 8.2 136 11-167 69-228 (453)
98 PRK09698 D-allose kinase; Prov 54.3 23 0.00049 32.6 4.9 53 300-352 239-295 (302)
99 PRK13310 N-acetyl-D-glucosamin 53.1 17 0.00038 33.4 4.0 52 124-177 89-147 (303)
100 PF02782 FGGY_C: FGGY family o 51.9 16 0.00035 31.1 3.3 48 297-353 149-196 (198)
101 PRK14101 bifunctional glucokin 47.4 34 0.00074 35.4 5.4 24 125-148 99-122 (638)
102 COG4012 Uncharacterized protei 39.2 1.8E+02 0.004 26.3 7.7 24 152-175 227-250 (342)
103 PRK09585 anmK anhydro-N-acetyl 38.4 24 0.00051 33.6 2.4 23 299-321 288-310 (365)
104 PRK15027 xylulokinase; Provisi 37.7 23 0.00049 35.2 2.3 49 298-354 387-435 (484)
105 COG4457 SrfB Uncharacterized p 37.4 1.5E+02 0.0032 30.7 7.6 24 105-128 464-487 (1014)
106 PF03727 Hexokinase_2: Hexokin 35.9 31 0.00066 30.8 2.6 50 301-353 189-240 (243)
107 smart00732 YqgFc Likely ribonu 33.3 49 0.0011 24.4 3.0 19 10-28 2-20 (99)
108 smart00732 YqgFc Likely ribonu 32.7 1.2E+02 0.0026 22.1 5.1 44 154-197 3-47 (99)
109 PRK13310 N-acetyl-D-glucosamin 32.4 3.9E+02 0.0085 24.4 11.2 67 278-351 233-300 (303)
110 PTZ00340 O-sialoglycoprotein e 32.2 21 0.00046 33.7 1.0 50 298-352 264-319 (345)
111 KOG1386 Nucleoside phosphatase 32.2 4.9E+02 0.011 25.9 10.1 87 84-171 65-181 (501)
112 PRK05082 N-acetylmannosamine k 31.9 3.9E+02 0.0085 24.2 10.7 46 129-176 94-145 (291)
113 TIGR03192 benz_CoA_bzdQ benzoy 31.4 95 0.0021 28.6 5.0 46 154-201 34-82 (293)
114 COG0533 QRI7 Metal-dependent p 31.3 29 0.00063 32.5 1.7 56 293-353 257-318 (342)
115 TIGR01312 XylB D-xylulose kina 30.6 50 0.0011 32.6 3.4 48 298-354 391-438 (481)
116 TIGR01319 glmL_fam conserved h 30.6 28 0.00061 34.1 1.5 71 105-175 175-272 (463)
117 PRK03011 butyrate kinase; Prov 26.5 83 0.0018 29.9 3.9 50 298-351 296-345 (358)
118 PRK00047 glpK glycerol kinase; 26.0 50 0.0011 32.9 2.5 48 298-354 404-451 (498)
119 PRK13333 pantothenate kinase; 25.8 81 0.0017 27.4 3.4 27 143-172 77-103 (206)
120 TIGR01311 glycerol_kin glycero 25.8 49 0.0011 33.0 2.3 48 298-354 400-447 (493)
121 PTZ00294 glycerol kinase-like 24.6 77 0.0017 31.7 3.5 48 298-354 407-454 (504)
122 TIGR03281 methan_mark_12 putat 24.5 81 0.0018 29.2 3.2 43 300-352 265-310 (326)
123 PF13941 MutL: MutL protein 24.5 45 0.00097 32.8 1.7 75 104-178 178-274 (457)
124 PF00370 FGGY_N: FGGY family o 24.1 59 0.0013 28.8 2.3 19 11-29 2-20 (245)
125 PF01968 Hydantoinase_A: Hydan 22.5 50 0.0011 30.4 1.6 27 7-33 75-101 (290)
126 PF13941 MutL: MutL protein 22.2 56 0.0012 32.2 1.9 24 10-33 1-26 (457)
127 KOG2960 Protein involved in th 22.1 91 0.002 27.3 2.9 77 293-374 71-152 (328)
128 COG4012 Uncharacterized protei 21.9 1.4E+02 0.0031 27.0 4.1 21 154-175 3-23 (342)
129 PLN02666 5-oxoprolinase 21.6 94 0.002 35.0 3.6 21 152-173 314-334 (1275)
130 PRK03011 butyrate kinase; Prov 21.6 66 0.0014 30.6 2.2 24 9-32 2-25 (358)
131 PRK10331 L-fuculokinase; Provi 21.5 1E+02 0.0022 30.5 3.6 48 298-354 390-437 (470)
132 TIGR03286 methan_mark_15 putat 21.3 1.7E+02 0.0036 28.4 4.8 49 153-201 145-193 (404)
133 PLN02669 xylulokinase 20.2 58 0.0013 33.1 1.6 36 133-168 273-310 (556)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.7e-83 Score=609.44 Aligned_cols=372 Identities=48% Similarity=0.888 Sum_probs=347.2
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHHHH
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAME 87 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~~~ 87 (379)
..++||||+||.++|+||+||+.|++++||+++++++.....+...+++++|+++...+..+++++|+++|.+.|||.+|
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 35689999999999999999999999999999998765322232345688999988777888999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEEEE
Q 017011 88 RLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVV 167 (379)
Q Consensus 88 ~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 167 (379)
.+|+|+|.+.|.+++.++|+++++|+++++..|+++++++||.|++|++++.+++++++|++|+++|+|||+|++.|+|+
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc
Q 017011 168 PIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP 247 (379)
Q Consensus 168 pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 247 (379)
||+||+++++++.+.++||.+++++|.++|.++++++.+..+.+.++++|+++||++.|+.++.+...........|++|
T Consensus 164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP 243 (375)
T PTZ00452 164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP 243 (375)
T ss_pred EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence 99999999999999999999999999999998888877666788999999999999999888776544434456789999
Q ss_pred CCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCC
Q 017011 248 DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASP 327 (379)
Q Consensus 248 ~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~ 327 (379)
||+.+.++.+||.+||+||+|+.++.+..+|+++|.++|++||.|.|+.|++||||+||+|++|||.+||++||++++|.
T Consensus 244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~ 323 (375)
T PTZ00452 244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS 323 (375)
T ss_pred CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 328 GVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 328 ~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
..+++|..++++.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 7889999999999999999999999999999999999999999999999998
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.1e-82 Score=605.57 Aligned_cols=374 Identities=65% Similarity=1.107 Sum_probs=350.1
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
.++.++||||+||.++|+||+||+.|++++||.++++++...+.+.++.+.++|+++...+...++++|+++|.+.|||.
T Consensus 3 ~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~ 82 (376)
T PTZ00281 3 GEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 82 (376)
T ss_pred CCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHH
Confidence 35777999999999999999999999999999999987765444445667899999887777789999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEE
Q 017011 86 MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTH 165 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 165 (379)
++.+|+|+|.+.|.++++++|+++++|++++...|+++++++||.|+++++++.+++++++|++|++||||||+|++.|+
T Consensus 83 ~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (376)
T PTZ00281 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSH 162 (376)
T ss_pred HHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEE
Q 017011 166 VVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYE 245 (379)
Q Consensus 166 v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
|+||+||+++.+++.++++||++++++|.++|..++.++....+.+.++++|+++||++.++..+.+.........+.|.
T Consensus 163 v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~ 242 (376)
T PTZ00281 163 TVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242 (376)
T ss_pred EEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence 99999999999999999999999999999999988888776777889999999999999998877765444444567899
Q ss_pred ccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC
Q 017011 246 LPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA 325 (379)
Q Consensus 246 lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~ 325 (379)
+|||+.+.++.+|+.+||+||+|+.++.+..+|+++|.++|++||.|.|+.|++||||+||+|++|||.+||++||+.++
T Consensus 243 LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~ 322 (376)
T PTZ00281 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALA 322 (376)
T ss_pred CCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 326 SPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 326 ~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
|...+++|+.+++|.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 323 p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 323 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 987889999999999999999999999999999999999999999999999998
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.1e-82 Score=602.41 Aligned_cols=372 Identities=46% Similarity=0.896 Sum_probs=347.4
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
..+..+||||+||+++|+||+|++.|++++||++++++....+.+....+.++|+++...++..++++|+++|.+.|||.
T Consensus 9 ~~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 9 LYSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWND 88 (380)
T ss_pred hccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHH
Confidence 45677999999999999999999999999999999988765544555567899999887777788999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEE
Q 017011 86 MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTH 165 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 165 (379)
+|.+|+|+| +.|++++.++|+++++++++++..|+++++++||.|++|++++.+++++++|++|+++|+|||+|++.|+
T Consensus 89 ~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~ 167 (380)
T PTZ00466 89 MENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH 167 (380)
T ss_pred HHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence 999999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEE
Q 017011 166 VVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYE 245 (379)
Q Consensus 166 v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
|+||+||+++.+++.++++||++++++|.++|.+++..+.+..+.+.++++|+++||++.|+..+.+... .......|+
T Consensus 168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~ 246 (380)
T PTZ00466 168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYI 246 (380)
T ss_pred EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEE
Confidence 9999999999999999999999999999999988887777677888999999999999999887765332 223457899
Q ss_pred ccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC
Q 017011 246 LPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA 325 (379)
Q Consensus 246 lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~ 325 (379)
+|||..+.++.+||.+||+||+|+.++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.+.
T Consensus 247 LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~ 326 (380)
T PTZ00466 247 LPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFA 326 (380)
T ss_pred CCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 326 SPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 326 ~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
|...+++|..++++.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 327 p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 327 PKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 988889999999999999999999999999999999999999999999999998
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=3.8e-82 Score=580.36 Aligned_cols=369 Identities=64% Similarity=1.097 Sum_probs=350.6
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
..+..+||||+|+..+|+||+||+.|+.++||.++++++..++.+..+++.++|++|...+ .+++|+++|.+.|||+
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence 3455899999999999999999999999999999999998888888899999999998877 7799999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEE
Q 017011 86 MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTH 165 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 165 (379)
++.+|.|+|++.|.+.|+++|+++++|+++|..+|+++++++||.|++|++++..++++ |++|+++|+|||+|++.|.
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999664444 9999999999999999999
Q ss_pred EEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEE
Q 017011 166 VVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYE 245 (379)
Q Consensus 166 v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
++||+||+++++.+..+++||+++++++...|.++++++....+.+.++++|++.||++.|++++.............|+
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999998988888889999999999999999999998877444556677799
Q ss_pred ccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC
Q 017011 246 LPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA 325 (379)
Q Consensus 246 lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~ 325 (379)
+|||+.+.++.+|+.+||++|+|+.++....+|++.+.++|.+|+.|+|+.|+.||+|+||++.+|||.+||++|++.+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 326 SPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 326 ~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
|...+++|+.++++.+++|+||||+|+++.|++.||||+||+|+|+.+++||||
T Consensus 319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 988899999999999999999999999999999999999999999999999999
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.9e-80 Score=591.04 Aligned_cols=374 Identities=61% Similarity=1.067 Sum_probs=347.1
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
.++.++||||+||.++|+||+|++.|++++||+++++++...+.+..++..++|+++...++..++++|+++|.+.|||.
T Consensus 3 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~ 82 (378)
T PTZ00004 3 VEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDD 82 (378)
T ss_pred CCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHH
Confidence 45677999999999999999999999999999999987754444444567899999887777788999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEE
Q 017011 86 MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTH 165 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 165 (379)
++.+|+|+|.+.|...+.++||++++|++++...|+++++++||.++++++++.+++++++|++|+++|+|||+|++.|+
T Consensus 83 ~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (378)
T PTZ00004 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 162 (378)
T ss_pred HHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEE
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCC-CCcceE
Q 017011 166 VVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESS-QLDKQY 244 (379)
Q Consensus 166 v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 244 (379)
|+||+||+++.+++.++++||++++++|.++|..++..+....+.+.++++|+++||++.|++++.+...... .....|
T Consensus 163 v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y 242 (378)
T PTZ00004 163 TVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESY 242 (378)
T ss_pred EEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEE
Confidence 9999999999999999999999999999999998888776666788999999999999999988775433222 236789
Q ss_pred EccCCceeccCcccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhh
Q 017011 245 ELPDGQVITIGAAQFKGPEVLFDPSRMGLE-TEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCN 323 (379)
Q Consensus 245 ~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~ 323 (379)
.+|||..+.++.+||.+||+||+|+.++.+ ..+|+++|.++|.+||.|.|+.|++||+|+||+|++|||.+||++||++
T Consensus 243 ~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~ 322 (378)
T PTZ00004 243 ELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTT 322 (378)
T ss_pred ECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHH
Confidence 999999999999999999999999998887 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 324 LASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 324 ~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
++|...+++|..+++|.+++|+|||++|++++|++.||||+||+|+|++++.||||
T Consensus 323 ~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 323 LAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred hCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99988789999999999999999999999999999999999999999999999998
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.5e-74 Score=557.27 Aligned_cols=370 Identities=38% Similarity=0.673 Sum_probs=331.9
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCcc---ccCCCcceeecchhhhccCCeeeeccccCCcccCHH
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSM---IGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWD 84 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~---~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~ 84 (379)
..++||||+||+++|+||+|++.|++++||++++++..... .+....++++|+++...+..+.+++|+++|.|.|||
T Consensus 3 ~~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd 82 (414)
T PTZ00280 3 TLPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWD 82 (414)
T ss_pred CCCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHH
Confidence 35689999999999999999999999999999987663211 111233678999998887778999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhcc----------CCceE
Q 017011 85 AMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYAS----------GRTTG 154 (379)
Q Consensus 85 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~ 154 (379)
.++.+|+|+|.+.|++++.++++++++|++++...|+++++++||.++++++++..++++++|++ |.++|
T Consensus 83 ~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tg 162 (414)
T PTZ00280 83 LMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTG 162 (414)
T ss_pred HHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeE
Confidence 99999999998899999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhc
Q 017011 155 IVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMS 234 (379)
Q Consensus 155 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~ 234 (379)
||||+|++.|+|+||+||+++.+++.++++||++++++|.++|.+++..+....+.+.++++|+++||+..|+.++.+..
T Consensus 163 lVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~ 242 (414)
T PTZ00280 163 TVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKY 242 (414)
T ss_pred EEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888877666677899999999999999988877654
Q ss_pred ccC-CCCcceEEccCC-----ceeccCcccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCC
Q 017011 235 KES-SQLDKQYELPDG-----QVITIGAAQFKGPEVLFDPSRMGLE-TEGAHEILVRAIMRSDMDVRREMYGNVVLSGGT 307 (379)
Q Consensus 235 ~~~-~~~~~~~~lp~~-----~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~ 307 (379)
... ......|.+||. ..+.++.+||.+||+||+|+.++.. ..+|+++|.++|++||+|.|+.|++||+|+||+
T Consensus 243 ~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~ 322 (414)
T PTZ00280 243 DSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGS 322 (414)
T ss_pred hcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCc
Confidence 321 223456888872 3788999999999999999987654 459999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhcCC----------------CCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCC
Q 017011 308 SLIPGLPDRLAKELCNLAS----------------PGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGP 371 (379)
Q Consensus 308 s~i~G~~~rl~~eL~~~~~----------------~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 371 (379)
|++|||.+||++||+++++ ...+++|..++++.+++|+|||++|++++|+++||||+||+|+|+
T Consensus 323 s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~ 402 (414)
T PTZ00280 323 TMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGP 402 (414)
T ss_pred ccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccCh
Confidence 9999999999999999863 345788888888899999999999999999999999999999999
Q ss_pred cccccc
Q 017011 372 SVVHMK 377 (379)
Q Consensus 372 ~~~~~k 377 (379)
++++|+
T Consensus 403 ~i~~~~ 408 (414)
T PTZ00280 403 SICRYN 408 (414)
T ss_pred Hheeec
Confidence 999987
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=2.7e-75 Score=561.89 Aligned_cols=368 Identities=48% Similarity=0.903 Sum_probs=322.9
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
+++.++||||+||.++|+||+||+.|+.++|+.++++..... ..++++|+++........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 478899999999999999999999999999999998766431 125789988666667788999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEE
Q 017011 86 MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTH 165 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 165 (379)
++.+|+|+|.+.|..++.+++|++++|+++++..|+.+++++||.+++++++++++++|++|++|.++|||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEecccHHHHHHHHHHHHhhCCC-----------------cccchhHHHHHHHHHHHcccCccCHH
Q 017011 166 VVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGY-----------------IFTTSAEREIVRDIKERLSYVAMDFQ 228 (379)
Q Consensus 166 v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----------------~~~~~~~~~~~~~ik~~~~~~~~~~~ 228 (379)
|+||+||+++.+++.++++||++++++|.++|..++. .+....+...++++|++.|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 9999999999999999999999999999999998632 22233467889999999999999887
Q ss_pred HHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCC-------CHHHHHHHHHHhCCHHHHHhhhcCe
Q 017011 229 KELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETE-------GAHEILVRAIMRSDMDVRREMYGNV 301 (379)
Q Consensus 229 ~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~-------~l~~~i~~~i~~~~~~~r~~l~~nI 301 (379)
.... ..........|.+||++.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|++||.|.|+.|++||
T Consensus 236 ~~~~-~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 EEQE-EQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp HHHH-HHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred cccc-cccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 5111 1112456788999999999999999999999999999887766 9999999999999999999999999
Q ss_pred EeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCC-CCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 302 VLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPP-QRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 302 il~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
+||||+|++|||.+||++||..+.+...+++|+.++ +|.+++|+|||++|++.+|++.||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999998888899999998 999999999999999999999999999999999999999998
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=5e-74 Score=548.80 Aligned_cols=369 Identities=59% Similarity=1.060 Sum_probs=339.1
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHHHHHH
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERL 89 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~~~~~ 89 (379)
++||||+||+++|+||+|++.|++++||+++++++.....+ ....+++|+++.+.++...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999998765432111 23467899998777666689999999999999999999
Q ss_pred HHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEEEEEe
Q 017011 90 WEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPI 169 (379)
Q Consensus 90 l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 169 (379)
|+|+|.+.|+..+.++++++++|.+.+...|+.+++++||.++++++++++++++++|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999778999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhccc---CCCCcceEEc
Q 017011 170 YEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKE---SSQLDKQYEL 246 (379)
Q Consensus 170 ~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l 246 (379)
+||+++.+++.++++||++++++|.++|..++..+....+.+.++++|+++|+++.++..+.+.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886555555667889999999999999988877654432 2345678999
Q ss_pred cCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCC
Q 017011 247 PDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLAS 326 (379)
Q Consensus 247 p~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~ 326 (379)
|||..+.++.+|+.++|+||+|+..+.+..+|+++|.++|.+||.|+|+.+++||+||||+|++|||.+||++||+.++|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 327 PGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 327 ~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
...++++...++|.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 87789998888999999999999999999999999999999999999999998
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=5e-74 Score=511.59 Aligned_cols=371 Identities=36% Similarity=0.645 Sum_probs=320.5
Q ss_pred ccCcCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc-cCCeeeeccccCCccc
Q 017011 3 VEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK-RGVLRLSHPVNRGMVR 81 (379)
Q Consensus 3 ~~~~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~-~~~~~~~~p~~~g~i~ 81 (379)
+-+.++-.+||||+||+++|+||+|++.|++++|+.++...+... ...+.+.++++.++... ++...++.|+++|.+.
T Consensus 5 ~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~-d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~ 83 (426)
T KOG0679|consen 5 VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDG-DAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVE 83 (426)
T ss_pred cccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccC-ccccccceEeechhccCCCCCCeeccchhcCCcc
Confidence 345788899999999999999999999999999999996322111 11233447888877544 7778999999999999
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCC
Q 017011 82 DWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGE 161 (379)
Q Consensus 82 ~~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~ 161 (379)
|||.++.+|+|.+.++|+.+|.++|+++++|+++++..|+++++.+||.+++|+++++..++|++|++|+.||||||+|+
T Consensus 84 dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa 163 (426)
T KOG0679|consen 84 DWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGA 163 (426)
T ss_pred cHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccch---------------------------------h
Q 017011 162 GVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTS---------------------------------A 208 (379)
Q Consensus 162 ~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~---------------------------------~ 208 (379)
..|+|+||+||+++.+.+.+.++||+.++..+++.|..++.++.+. .
T Consensus 164 ~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~ 243 (426)
T KOG0679|consen 164 THTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYM 243 (426)
T ss_pred CCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876543211 0
Q ss_pred HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCC------------CCCC
Q 017011 209 EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMG------------LETE 276 (379)
Q Consensus 209 ~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~------------~~~~ 276 (379)
.....+++|++.+.++-..-.+.. ..+..+++|++|||....++.+||++||.||.|+... ....
T Consensus 244 ~~~v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~l 320 (426)
T KOG0679|consen 244 EQRVYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTML 320 (426)
T ss_pred HHHHHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCcccc
Confidence 012345555555555422111111 1235778999999999999999999999999998742 2346
Q ss_pred CHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCC---CCccceeehhhhhhcc
Q 017011 277 GAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPP---QRLHSVWIGGSILASL 353 (379)
Q Consensus 277 ~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~---~~~~~~w~Gasi~a~l 353 (379)
|+++++.++|..||.|+|..|++|||+|||+|.|+||.+||+.||+.+.|.. +++++++. ++.+++|+||||+|+|
T Consensus 321 G~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASL 399 (426)
T KOG0679|consen 321 GLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASL 399 (426)
T ss_pred CchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhcc
Confidence 9999999999999999999999999999999999999999999999999987 99998764 8999999999999999
Q ss_pred cccccccccHHHHhhcCC-ccccccc
Q 017011 354 STFQQMWITKEDYMESGP-SVVHMKC 378 (379)
Q Consensus 354 ~~~~~~~itr~ey~e~G~-~~~~~k~ 378 (379)
++|+++||||+||+|.|. ..+.|||
T Consensus 400 gtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 400 GTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred ccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999999 8888888
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=2.7e-71 Score=529.33 Aligned_cols=367 Identities=60% Similarity=1.062 Sum_probs=335.2
Q ss_pred cEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccC-CeeeeccccCCcccCHHHHHHH
Q 017011 11 SIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG-VLRLSHPVNRGMVRDWDAMERL 89 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~-~~~~~~p~~~g~i~~~~~~~~~ 89 (379)
+||||+||+++|+||+|++.|++++||+++++++.....+.++..+++|+++..... ..++++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 689999999999999999999999999999876654333334567899999887655 3789999999999999999999
Q ss_pred HHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEEEEEe
Q 017011 90 WEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPI 169 (379)
Q Consensus 90 l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 169 (379)
|+|+|.+.+..++.++++++++|++++...|+.+++++||.++++++++++++++++|++|.++|+|||+|+++|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHh-cccCCCCcceEEccC
Q 017011 170 YEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAM-SKESSQLDKQYELPD 248 (379)
Q Consensus 170 ~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lp~ 248 (379)
+||+++.+++.++++||+++++++.++|..++..+....+...++++|+++|+++.++..+... ..........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 9999999999999999999999999999988876666677889999999999999988766522 122334567899999
Q ss_pred CceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCC-
Q 017011 249 GQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASP- 327 (379)
Q Consensus 249 ~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~- 327 (379)
+..+.++.+|+.++|+||+|+..+....+|+++|.++|+.||.+.|+.+++||+||||+|++|||.+||+++|..++|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999999999986
Q ss_pred -CceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccc
Q 017011 328 -GVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMK 377 (379)
Q Consensus 328 -~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k 377 (379)
...+++...++|.+++|+|||++|++++|++.||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 45677888889999999999999999999999999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.3e-70 Score=465.92 Aligned_cols=371 Identities=44% Similarity=0.860 Sum_probs=341.9
Q ss_pred CCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCcc-cc-CCCcceeecchhhhccCCeeeeccccCCcccCHH
Q 017011 7 YEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSM-IG-IGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWD 84 (379)
Q Consensus 7 ~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~-~~-~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~ 84 (379)
++.++||.|+||.+.|+||+|++.|.++||+.++||--+..- .+ ..-+++.+|+++-..++.+++.+|+++|.+.||+
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 568999999999999999999999999999999997432210 11 1235688999999889999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcE
Q 017011 85 AMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVT 164 (379)
Q Consensus 85 ~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 164 (379)
+++++|+|.|.++|+++|.+.++++++||++|.++|+++++++||.++|.++++.-++++++|+.|..+|+|||.|-+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceE
Q 017011 165 HVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQY 244 (379)
Q Consensus 165 ~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
.|+||++|+.+++-.++++++|++++++|.++|..+++.+..+++++.++++|+++||++-|.+.+.+....+--.-.+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999887766655555567889
Q ss_pred EccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhc
Q 017011 245 ELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNL 324 (379)
Q Consensus 245 ~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~ 324 (379)
.+|||..|.++.|||.+||.||+|.+++.+.+++.+++..+|+..++|.|..+.++|+|+||++.-||+..||++||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC-----------CCceEEEECCCCCccceeehhhhhhcc-cccccccccHHHHhhcCCcccccc
Q 017011 325 AS-----------PGVGVRVVAPPQRLHSVWIGGSILASL-STFQQMWITKEDYMESGPSVVHMK 377 (379)
Q Consensus 325 ~~-----------~~~~i~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~ey~e~G~~~~~~k 377 (379)
.- ...++++-.+|.+.+.+|+||+++|.+ .+.+++|+||+||.|.|.+.+++.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 31 123778888888999999999999995 677899999999999999988764
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-67 Score=502.67 Aligned_cols=372 Identities=49% Similarity=0.875 Sum_probs=336.8
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecC-CCCccccCCCcceeecchhhhccC--CeeeeccccCCcccCHH
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPR-NKNSMIGIGQKDMYFGDEAQAKRG--VLRLSHPVNRGMVRDWD 84 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~-~~~~~~~~~~~~~~vg~~a~~~~~--~~~~~~p~~~g~i~~~~ 84 (379)
..++||||+||+++|+||+|++.|++++|+++++.+ +..++....+.+.++|+++....+ ..++++|+++|.+.||+
T Consensus 5 ~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~ 84 (444)
T COG5277 5 NVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWD 84 (444)
T ss_pred CCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcH
Confidence 344499999999999999999999999999999875 455555566788899999887755 68899999999999999
Q ss_pred HHHHHHHHHHhh--hccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCc--eEEEEeCC
Q 017011 85 AMERLWEHIFDK--ELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRT--TGIVMDSG 160 (379)
Q Consensus 85 ~~~~~l~~~~~~--~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVDiG 160 (379)
+++++|+|+|.+ .+...+.++|+++++|++++..+|+.+++++||.++++++++..++++++|+.|.. +|||||+|
T Consensus 85 ~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G 164 (444)
T COG5277 85 AMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG 164 (444)
T ss_pred HHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcC
Confidence 999999999988 57788899999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhh-----CCCcccch---hHHHHHHHHHHHcc-------cCcc
Q 017011 161 EGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTK-----DGYIFTTS---AEREIVRDIKERLS-------YVAM 225 (379)
Q Consensus 161 ~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~~~~ 225 (379)
++.|+|+||+||.++.+++.++++||++++.+|.++|.. +++.+... .+.+.++.+|++.| |+..
T Consensus 165 ~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~ 244 (444)
T COG5277 165 DSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSL 244 (444)
T ss_pred CCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhh
Confidence 999999999999999999999999999999999999998 55655444 45889999999999 8877
Q ss_pred CHHHHHHhccc----------------CCCCcceEEccCCceeccCcc-cccccccccCCC--CCCCCCCC---------
Q 017011 226 DFQKELAMSKE----------------SSQLDKQYELPDGQVITIGAA-QFKGPEVLFDPS--RMGLETEG--------- 277 (379)
Q Consensus 226 ~~~~~~~~~~~----------------~~~~~~~~~lp~~~~i~i~~~-~~~~~E~lF~p~--~~~~~~~~--------- 277 (379)
+..++.+.... .......+..|++..+.+..+ ||++||.+|.|+ ..+.+.++
T Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~ 324 (444)
T COG5277 245 DAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQEL 324 (444)
T ss_pred cchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhh
Confidence 66554433221 234556788999999999998 999999999999 66555555
Q ss_pred ------------------HHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCC
Q 017011 278 ------------------AHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQR 339 (379)
Q Consensus 278 ------------------l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~ 339 (379)
|++++.++|+.+|.+.|+.|++||+||||+|++|||.+||+.||+.+.|..+++.|..+++|
T Consensus 325 ~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~ 404 (444)
T COG5277 325 VAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDP 404 (444)
T ss_pred hhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCch
Confidence 99999999999999999999999999999999999999999999999999889999999999
Q ss_pred ccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 340 LHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 340 ~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
.+.+|+|||++|++..+.+.||||+||+|+|++++++|+|
T Consensus 405 ~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 405 SLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 9999999999999999999999999999999999999987
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=3.2e-65 Score=444.79 Aligned_cols=362 Identities=30% Similarity=0.548 Sum_probs=324.1
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhcc--CCeeeeccccCCcccCHHH
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKR--GVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~--~~~~~~~p~~~g~i~~~~~ 85 (379)
+..+||+|+|++++|+|++++..|. ++|++..+.++. .++.++|++..+.+ +.+.+++|+++|.+.+|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 5679999999999999999999998 669998876653 35578998877764 4467889999999999999
Q ss_pred HHHHHHHHHhhh-ccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhcc----C-------Cce
Q 017011 86 MERLWEHIFDKE-LRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYAS----G-------RTT 153 (379)
Q Consensus 86 ~~~~l~~~~~~~-l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----g-------~~~ 153 (379)
-.++|+|+|.+. +..+.+++.+++++|.++-+...+...+++||+++|.++.=.+.+.++++-. + ...
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999653 3455678999999999998999999999999999999998888888887751 1 127
Q ss_pred EEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHh
Q 017011 154 GIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAM 233 (379)
Q Consensus 154 ~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~ 233 (379)
++|||.|++.|.|+|+++|.+...++.++++||+.+|..|++.+.+|+++. +.+...++++|+..|||+.|+.+.+..
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNv--mdET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNV--MDETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcc--cchhhhhhhhhhheEEechhhHHHHHH
Confidence 999999999999999999999999999999999999999999999998887 678899999999999999999887765
Q ss_pred cccC---CCCcceEEccC-------------------CceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCH
Q 017011 234 SKES---SQLDKQYELPD-------------------GQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDM 291 (379)
Q Consensus 234 ~~~~---~~~~~~~~lp~-------------------~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~ 291 (379)
+... +.....|.+|| .+.|.+..|||.+||+||+|+.++..+.||+++|.++|..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 4332 23345566664 4577888999999999999999999999999999999999999
Q ss_pred HHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCC
Q 017011 292 DVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGP 371 (379)
Q Consensus 292 ~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 371 (379)
++|+.|+.||+++||.+++|||.+||..||+.++|.++.++|..+.||..-+|.||+-++.+++++..||||+||+|+|+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017011 372 SVVHMKCF 379 (379)
Q Consensus 372 ~~~~~k~~ 379 (379)
+++.+|+|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99999987
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=7.9e-56 Score=409.36 Aligned_cols=367 Identities=27% Similarity=0.530 Sum_probs=320.2
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccC-CeeeeccccCCcccCHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRG-VLRLSHPVNRGMVRDWD 84 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~-~~~~~~p~~~g~i~~~~ 84 (379)
..+..|||||+||+.+||||+|+..|+++|++.+.+++++.. +..-.+||++..+-.. ....++||++.++++|+
T Consensus 20 ~~n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwe 95 (645)
T KOG0681|consen 20 YSNTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWE 95 (645)
T ss_pred ccCCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHH
Confidence 345678999999999999999999999999999999886542 2222478877655433 24678999999999999
Q ss_pred HHHHHHHHHHhhhccCCC--CCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhcc----CCceEEEEe
Q 017011 85 AMERLWEHIFDKELRVTI--EEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYAS----GRTTGIVMD 158 (379)
Q Consensus 85 ~~~~~l~~~~~~~l~~~~--~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----g~~~~lVVD 158 (379)
.+|++++|+| .+|+.+. -++|+++|++..+|...|..+.+.|||.+|+|+|.+--+++.++|.. +..+|+||+
T Consensus 96 l~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis 174 (645)
T KOG0681|consen 96 LMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIIS 174 (645)
T ss_pred HHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEe
Confidence 9999999999 7899887 48999999999999999999999999999999999999999999942 234799999
Q ss_pred CCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCC
Q 017011 159 SGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESS 238 (379)
Q Consensus 159 iG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 238 (379)
+|++.|.|.||.||..+...+.++++||.++..+|.++|..+++.++...+...++.++..+||++.||.+++.++....
T Consensus 175 ~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d 254 (645)
T KOG0681|consen 175 MGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMD 254 (645)
T ss_pred cCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999888888888899999999999999999877654321100
Q ss_pred -----------------------------------------------CC-------------------cc---e----E-
Q 017011 239 -----------------------------------------------QL-------------------DK---Q----Y- 244 (379)
Q Consensus 239 -----------------------------------------------~~-------------------~~---~----~- 244 (379)
.. .. . |
T Consensus 255 ~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ 334 (645)
T KOG0681|consen 255 YYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFP 334 (645)
T ss_pred hhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhch
Confidence 00 00 0 0
Q ss_pred --EccC--------------------------------------------------------------------------
Q 017011 245 --ELPD-------------------------------------------------------------------------- 248 (379)
Q Consensus 245 --~lp~-------------------------------------------------------------------------- 248 (379)
.+|.
T Consensus 335 ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~ 414 (645)
T KOG0681|consen 335 LLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQEL 414 (645)
T ss_pred hhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000
Q ss_pred --------------------------------------------------------------------------------
Q 017011 249 -------------------------------------------------------------------------------- 248 (379)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (379)
T Consensus 415 ~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~ 494 (645)
T KOG0681|consen 415 KDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEG 494 (645)
T ss_pred hhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccccc
Confidence
Q ss_pred ---------------CceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCH
Q 017011 249 ---------------GQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGL 313 (379)
Q Consensus 249 ---------------~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~ 313 (379)
..+++++.+++++||++|+|+++|.+++||.+++..++++.|.+.+.++.+||+||||+|++||+
T Consensus 495 ~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGm 574 (645)
T KOG0681|consen 495 TTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGM 574 (645)
T ss_pred ccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCH
Confidence 00566788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccc
Q 017011 314 PDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMK 377 (379)
Q Consensus 314 ~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k 377 (379)
.+||+.||..+.|..++|.|+.+.+|.+++|+||+.+|...+|...|+||+||+|+|+++++.-
T Consensus 575 keRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh 638 (645)
T KOG0681|consen 575 KERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH 638 (645)
T ss_pred HHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998763
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.2e-50 Score=352.48 Aligned_cols=367 Identities=38% Similarity=0.622 Sum_probs=311.5
Q ss_pred CCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCC--------ccccCCCcceeecchhhhccCCeeeeccccCCcc
Q 017011 9 FRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKN--------SMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMV 80 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~--------~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i 80 (379)
+.++|+|+|+.++|.||+|...|.+++|++++...... ..-+...-++++|++|.. .+.+.+.+|+++|.+
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV 82 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence 44599999999999999999999999999987532111 112233456889999988 557889999999999
Q ss_pred cCHHHHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccC--------Cc
Q 017011 81 RDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASG--------RT 152 (379)
Q Consensus 81 ~~~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 152 (379)
.|||.++++|..++.++|...|+++..++++|+++++++|+.+.+++||.++++.+++.-++++|+-++- .-
T Consensus 83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 9999999999999989999999999999999999999999999999999999999999999998876543 24
Q ss_pred eEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHH
Q 017011 153 TGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELA 232 (379)
Q Consensus 153 ~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~ 232 (379)
+|+|||.|-+.|.|.||.+|+++-++++.+|+.|++++..+.++|.+++..++...+.+.++.+|+++||+++|.-.+..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888899999999999999999877765
Q ss_pred hcccCCCC-cceE---EccC--CceeccCcccccccccccCCCCCCCCC-CCHHHHHHHHHHhCCHHHHHhhhcCeEeec
Q 017011 233 MSKESSQL-DKQY---ELPD--GQVITIGAAQFKGPEVLFDPSRMGLET-EGAHEILVRAIMRSDMDVRREMYGNVVLSG 305 (379)
Q Consensus 233 ~~~~~~~~-~~~~---~lp~--~~~i~i~~~~~~~~E~lF~p~~~~~~~-~~l~~~i~~~i~~~~~~~r~~l~~nIil~G 305 (379)
++...+.. -+.| .+-. ...+.++.+||..||++|+|.+...+. .++++++...|+.||+|.|+.|++||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 54322110 0011 1111 234677889999999999999876554 689999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCC----CC----------ceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCC
Q 017011 306 GTSLIPGLPDRLAKELCNLAS----PG----------VGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGP 371 (379)
Q Consensus 306 G~s~i~G~~~rl~~eL~~~~~----~~----------~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 371 (379)
|.+...+|..|++.+++.+.. .+ ..+.++...-..+++|-|+|++++.+.|...+=||+||+|+|+
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~ 402 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP 402 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence 999999999999998875431 11 1355555556788999999999999999999999999999999
Q ss_pred ccccc
Q 017011 372 SVVHM 376 (379)
Q Consensus 372 ~~~~~ 376 (379)
+|++.
T Consensus 403 si~r~ 407 (415)
T KOG0678|consen 403 SICRT 407 (415)
T ss_pred hhhhc
Confidence 99876
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=6.7e-41 Score=308.27 Aligned_cols=307 Identities=21% Similarity=0.393 Sum_probs=243.0
Q ss_pred CCeeeeccccCCcccC----------HHHHHHHHHHHHhhhccCCCC---CCcEEEEcCCCCChhhHHHHHHHhhccCCC
Q 017011 67 GVLRLSHPVNRGMVRD----------WDAMERLWEHIFDKELRVTIE---EHPVLLTEPPLNPKINREKMVEIMFEGFEI 133 (379)
Q Consensus 67 ~~~~~~~p~~~g~i~~----------~~~~~~~l~~~~~~~l~~~~~---~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 133 (379)
..+.+++|+++|.+.- .++++++|+|++.+.|++.++ .+.+|+++|....+...+.++.++|-+++|
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 3467889999997652 467899999999999999865 588999999999999999999999999999
Q ss_pred CeEeeecchhhhhhccCCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCC-----cccchh
Q 017011 134 PATYVAIQAVLSLYASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGY-----IFTTSA 208 (379)
Q Consensus 134 ~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----~~~~~~ 208 (379)
.++.++.+++|++|++|.+++||||||++.|+|+||.||..++++...+++||.++++.+..+|.+.+. ++.+..
T Consensus 257 ~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~ 336 (618)
T KOG0797|consen 257 NSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPI 336 (618)
T ss_pred ceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987654 444667
Q ss_pred HHHHHHHHHHHcccCccCHHH-HHHh--cccCCCCcceEEccCCceeccCcccccccccccCCCCCC-------------
Q 017011 209 EREIVRDIKERLSYVAMDFQK-ELAM--SKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMG------------- 272 (379)
Q Consensus 209 ~~~~~~~ik~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~------------- 272 (379)
++.+++.+|+++|......-. .... .+.+......| ++.++.|...+|-.||.|.++.
T Consensus 337 d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~ky------tfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~ 410 (618)
T KOG0797|consen 337 DWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKY------TFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFP 410 (618)
T ss_pred cHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceee------eeeccchhhccchhhhhhhhhhccccccccccccC
Confidence 899999999999987643211 1111 11111111111 1222334444444444444320
Q ss_pred --------------------------------------------------------------------------------
Q 017011 273 -------------------------------------------------------------------------------- 272 (379)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (379)
T Consensus 411 q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~ 490 (618)
T KOG0797|consen 411 QPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIM 490 (618)
T ss_pred CCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhh
Confidence
Q ss_pred ------CCCC----CHHHHHHHHHHhC-CHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCC----ceEEEECC-
Q 017011 273 ------LETE----GAHEILVRAIMRS-DMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPG----VGVRVVAP- 336 (379)
Q Consensus 273 ------~~~~----~l~~~i~~~i~~~-~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~----~~i~v~~~- 336 (379)
.... .+.++|..+|..+ ..|.+++|++.|.++||+...||+.+.|++.+....|.. ..|.|+.+
T Consensus 491 n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~p 570 (618)
T KOG0797|consen 491 NKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPP 570 (618)
T ss_pred cccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCC
Confidence 0011 3445566777666 568899999999999999999999999999998766652 25667655
Q ss_pred --CCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 337 --PQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 337 --~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
.||++-+|+||+++|.+....++||++.||..+|.+.++.||.
T Consensus 571 rdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 571 RDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred cCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 4899999999999999999999999999999999999999874
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.8e-38 Score=297.94 Aligned_cols=307 Identities=19% Similarity=0.259 Sum_probs=237.6
Q ss_pred EEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc----cCCeeeeccccCCcccCHHHHH
Q 017011 12 IVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK----RGVLRLSHPVNRGMVRDWDAME 87 (379)
Q Consensus 12 vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~----~~~~~~~~p~~~g~i~~~~~~~ 87 (379)
|+||+||+++|+|+.++. +....||+++..+.. ++.+++|++|.+. .....+.+|+++|.+.||+.++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e 82 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATE 82 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHH
Confidence 999999999999999775 456679998875421 2347899999865 3457889999999999999999
Q ss_pred HHHHHHHhhhccCC-CCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCC
Q 017011 88 RLWEHIFDKELRVT-IEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGE 161 (379)
Q Consensus 88 ~~l~~~~~~~l~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 161 (379)
++|+|++.+.+... ....++++++|+.++...|+.+.+ +||.++++.++++++|+||++++|. .+++|||+|+
T Consensus 83 ~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~ 161 (335)
T PRK13930 83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG 161 (335)
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence 99999994443422 336789999999999888888776 6899999999999999999999987 5789999999
Q ss_pred CcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCc
Q 017011 162 GVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLD 241 (379)
Q Consensus 162 ~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 241 (379)
++|+++++.+|.++ .....++||.++|+.|.+++..+. .+ ..+.+.++++|+++|++..+...+. ... ....
T Consensus 162 gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~~~~~~~~~~--~~~-~~~~ 233 (335)
T PRK13930 162 GTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGSAYPLDEEES--MEV-RGRD 233 (335)
T ss_pred CeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhcCcCCCCCce--EEE-ECcc
Confidence 99999999999988 456789999999999999987642 22 1234679999999998876532110 000 0000
Q ss_pred ceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcC-eEeecCCCCCCCHHHHHHHH
Q 017011 242 KQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGN-VVLSGGTSLIPGLPDRLAKE 320 (379)
Q Consensus 242 ~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~n-Iil~GG~s~i~G~~~rl~~e 320 (379)
..+.+|+ .+.++.+++ .|++|.|- .++.+.|.++|++++.+.+..+++| |+||||+|++|||.+||+++
T Consensus 234 ~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~ 303 (335)
T PRK13930 234 LVTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE 303 (335)
T ss_pred CCCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHH
Confidence 1111222 333444444 47777652 3688999999999999999999987 99999999999999999999
Q ss_pred HhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 321 LCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 321 L~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
+. +++....+|..++-.||++++.-
T Consensus 304 ~~--------~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 304 TG--------LPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HC--------CCceecCCHHHHHHHHHHHHHhC
Confidence 85 23344557889999999998754
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=9.4e-37 Score=287.29 Aligned_cols=307 Identities=19% Similarity=0.270 Sum_probs=231.4
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc----cCCeeeeccccCCcccCHHH
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK----RGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~----~~~~~~~~p~~~g~i~~~~~ 85 (379)
+.|+||+||+++|+|++|++. .+.+||+++.+++. ++.+++|++|... .....+.+|+++|.+.||+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~ 77 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDV 77 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHH
Confidence 359999999999999999876 56799999987542 1246899999876 35577889999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCC-cEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeC
Q 017011 86 MERLWEHIFDKELRVTIEEH-PVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDS 159 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 159 (379)
.+++|+|++.+.+.. +..+ .++++.|..++...| +.++.+|+.++++.+.++++|+||++++|. .+++|||+
T Consensus 78 ~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r-~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDi 155 (334)
T PRK13927 78 TEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVER-RAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDI 155 (334)
T ss_pred HHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEe
Confidence 999999999776666 4444 677787866555554 557788899999999999999999999987 46799999
Q ss_pred CCCcEEEEEe-ecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCC
Q 017011 160 GEGVTHVVPI-YEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESS 238 (379)
Q Consensus 160 G~~~t~v~pv-~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 238 (379)
|+++|+++++ .+|....+ ..++||.++|+.|.+++.++. .+ ..+.+.++++|+++|++..+.+.. .... .
T Consensus 156 Gggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~~~~~~--~~~~-~ 226 (334)
T PRK13927 156 GGGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYPGDEVL--EMEV-R 226 (334)
T ss_pred CCCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCCCCCCc--eEEE-e
Confidence 9999999999 66665533 358999999999999986432 22 124567999999999876432100 0000 0
Q ss_pred CCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-CeEeecCCCCCCCHHHHH
Q 017011 239 QLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYG-NVVLSGGTSLIPGLPDRL 317 (379)
Q Consensus 239 ~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~-nIil~GG~s~i~G~~~rl 317 (379)
.....+.+|+ .+.+..+++ .|++|.|- .++.+.|.++|++++.+.+..+++ +|+||||+|++||+.+||
T Consensus 227 ~~~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l 296 (334)
T PRK13927 227 GRDLVTGLPK--TITISSNEI--REALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLL 296 (334)
T ss_pred CcccCCCCCe--EEEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHH
Confidence 0000011121 344444444 47777652 368899999999999888888887 499999999999999999
Q ss_pred HHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 318 AKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 318 ~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
++++. +++....+|..++-.||++++.-
T Consensus 297 ~~~~~--------~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 297 SEETG--------LPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence 99984 23444567899999999998754
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.5e-35 Score=278.59 Aligned_cols=311 Identities=17% Similarity=0.223 Sum_probs=234.6
Q ss_pred EEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc----cCCeeeeccccCCcccCHHHHH
Q 017011 12 IVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK----RGVLRLSHPVNRGMVRDWDAME 87 (379)
Q Consensus 12 vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~----~~~~~~~~p~~~g~i~~~~~~~ 87 (379)
|-||+||.++++-..++ ......||+++..++.. +..++-+++|++|... .....+++|+++|.+.||+.++
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 89999999999866443 33456788887653321 1112337799999876 3567889999999999999999
Q ss_pred HHHHHHHhhhccCCCC-CCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCC
Q 017011 88 RLWEHIFDKELRVTIE-EHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGE 161 (379)
Q Consensus 88 ~~l~~~~~~~l~~~~~-~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 161 (379)
++|+|++.+.+..... ..++++++|+.++..+|+. ++.+|+.++++.+.++++|+||++++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 9999999766653222 2369999999999999888 5567899999999999999999999987 6899999999
Q ss_pred CcEEEEEe-ecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCC
Q 017011 162 GVTHVVPI-YEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQL 240 (379)
Q Consensus 162 ~~t~v~pv-~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 240 (379)
++|+++++ .+|..... ..++||+++|+.|.+++.++. . ...+.+.++++|+++|++..+..++.. ... ...
T Consensus 160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~--~~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-N--LLIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-c--ccCCHHHHHHHHHHHhccccccccccc-eee-cCc
Confidence 99999999 66665543 358999999999999887542 1 123456799999999987654221110 000 001
Q ss_pred cceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-CeEeecCCCCCCCHHHHHHH
Q 017011 241 DKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYG-NVVLSGGTSLIPGLPDRLAK 319 (379)
Q Consensus 241 ~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~-nIil~GG~s~i~G~~~rl~~ 319 (379)
...+.+|++..+ . +-.+.|++|.|- .++.+.|.+++++++.+.+..+++ +|+||||+|++||+.+||++
T Consensus 232 ~~~~~~~~~~~i--~--~~~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTIEI--T--SVEVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEEEE--C--HHHHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 112344444322 2 235678888772 368899999999999999988987 79999999999999999999
Q ss_pred HHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 320 ELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 320 eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
++. +.+....+|..++-.||++++.-
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHhC
Confidence 993 24455678899999999998643
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=6.9e-35 Score=273.64 Aligned_cols=304 Identities=19% Similarity=0.306 Sum_probs=231.0
Q ss_pred cEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhcc----CCeeeeccccCCcccCHHHH
Q 017011 11 SIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKR----GVLRLSHPVNRGMVRDWDAM 86 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~----~~~~~~~p~~~g~i~~~~~~ 86 (379)
.|-||+||.++++-..++. -....||+++...+. +.-+++|++|..+. +...+.+|+++|.|.||+..
T Consensus 6 ~~giDlGt~~~~i~~~~~~-~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~ 77 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKG-IILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMT 77 (335)
T ss_pred eEEEEcccccEEEEECCCc-EEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHH
Confidence 5899999999998332332 123468887764221 12367999998763 55778899999999999999
Q ss_pred HHHHHHHHhh---hccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccC-----CceEEEEe
Q 017011 87 ERLWEHIFDK---ELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASG-----RTTGIVMD 158 (379)
Q Consensus 87 ~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVD 158 (379)
+.+|+|++.+ .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++|||
T Consensus 78 ~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvD 156 (335)
T PRK13929 78 TDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVD 156 (335)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEE
Confidence 9999999963 45555556789999999999999999988 779999999999999999999997 45899999
Q ss_pred CCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCC
Q 017011 159 SGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESS 238 (379)
Q Consensus 159 iG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 238 (379)
+|+++|+++++..|..+ .....++||.++++.|.+++.+. +++. .+...+|++|+++|++..+...+.... .
T Consensus 157 iG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~--~~~~~AE~iK~~l~~~~~~~~~~~~~v---~ 228 (335)
T PRK13929 157 IGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLL--IGERTAEQVKMEIGYALIEHEPETMEV---R 228 (335)
T ss_pred eCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHHcCCCCCCCCceEEE---e
Confidence 99999999999555444 33457899999999999998753 2221 234679999999998765432111000 0
Q ss_pred CCcceEEccCCceeccCccccc--ccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-CeEeecCCCCCCCHHH
Q 017011 239 QLDKQYELPDGQVITIGAAQFK--GPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYG-NVVLSGGTSLIPGLPD 315 (379)
Q Consensus 239 ~~~~~~~lp~~~~i~i~~~~~~--~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~-nIil~GG~s~i~G~~~ 315 (379)
.....+.+| ..+.+..+++. ++|.+| .+.+.|.++|.+++.+.+..+++ +|+||||+|++|||.+
T Consensus 229 g~~~~~~~p--~~i~i~~~~~~~~i~~~l~----------~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e 296 (335)
T PRK13929 229 GRDLVTGLP--KTITLESKEIQGAMRESLL----------HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKE 296 (335)
T ss_pred CCccCCCCC--eEEEEcHHHHHHHHHHHHH----------HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHH
Confidence 000111222 34566666665 567776 48999999999999999989998 6999999999999999
Q ss_pred HHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 316 RLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 316 rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
||++++.. .+....+|..++-.|+..+-
T Consensus 297 ~l~~~~~~--------~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 297 WLSEEIVV--------PVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHCC--------CceeCCCHHHHHHHHHHHHH
Confidence 99999942 33445688999999988763
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.5e-33 Score=258.91 Aligned_cols=305 Identities=19% Similarity=0.309 Sum_probs=221.0
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc----cCCeeeeccccCCcccCHHH
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK----RGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~----~~~~~~~~p~~~g~i~~~~~ 85 (379)
+-+-||+||.++++ |..+..-....||+++.++.. .+-..+|++|.++ ++.+.+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 45889999999999 444444444568888766542 2336799999876 46689999999999999999
Q ss_pred HHHHHHHHHhhhccC-CCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeC
Q 017011 86 MERLWEHIFDKELRV-TIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDS 159 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 159 (379)
.+.+++|++++.... ......++++.|...+..+|+.+.+.+ ...|+..|+++++|+|||+++|. ...+|||+
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999666664 345667999999999999999999888 56899999999999999999985 37899999
Q ss_pred CCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCC
Q 017011 160 GEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQ 239 (379)
Q Consensus 160 G~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
|+++|+|+.+..|..+ ....+++||+++++.+.+++.+++ ++ ......+|++|.+++++....++. ...-
T Consensus 153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l--~Ig~~tAE~iK~~~g~~~~~~~~~--~~~v--- 222 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NL--LIGERTAEKIKIEIGSASPPEEEE--SMEV--- 222 (326)
T ss_dssp -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SE--E--HHHHHHHHHHH-BSS--HHHH--EEEE---
T ss_pred CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Cc--ccCHHHHHHHHHhcceeeccCCCc--eEEE---
Confidence 9999999999999998 667889999999999999998765 33 456788999999999876543322 1100
Q ss_pred CcceEEccCCc--eeccC-cccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcC-eEeecCCCCCCCHHH
Q 017011 240 LDKQYELPDGQ--VITIG-AAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGN-VVLSGGTSLIPGLPD 315 (379)
Q Consensus 240 ~~~~~~lp~~~--~i~i~-~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~n-Iil~GG~s~i~G~~~ 315 (379)
.-..+-+|. .+.+. .+-..+.+..+. .+.+.|.++|.++|+++...+++| |+||||+|+++||.+
T Consensus 223 --~Grd~~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 223 --RGRDLITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp --EEEETTTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred --ECccccCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 001122222 22222 233444444443 389999999999999999887765 999999999999999
Q ss_pred HHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 316 RLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 316 rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
+|++++ .++|...++|.+++..|+..+..
T Consensus 292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 292 YISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999 45677778999999999887654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=8.8e-32 Score=253.29 Aligned_cols=306 Identities=18% Similarity=0.289 Sum_probs=222.0
Q ss_pred EEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc----cCCeeeeccccCCcccCHHHHH
Q 017011 12 IVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK----RGVLRLSHPVNRGMVRDWDAME 87 (379)
Q Consensus 12 vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~----~~~~~~~~p~~~g~i~~~~~~~ 87 (379)
+-||+||.++++...++ .-.+..||.++...+. ..-..+|++|..+ .....+.+|+.+|.+.||+..+
T Consensus 6 ~gIDlGt~~~~i~~~~~-~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVKGK-GIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEECCC-CEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 89999999999966533 3334568887754321 1235799998876 2456778999999999999999
Q ss_pred HHHHHHHhhhccCC-CCCCc-EEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCC
Q 017011 88 RLWEHIFDKELRVT-IEEHP-VLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSG 160 (379)
Q Consensus 88 ~~l~~~~~~~l~~~-~~~~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 160 (379)
++|+|++ +.+... ....| +++++|..++...|+. ++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~~-~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKRA-VREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHHH-HHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999999 444332 34555 8999988877665555 5566699999999999999999999987 679999999
Q ss_pred CCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCC
Q 017011 161 EGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQL 240 (379)
Q Consensus 161 ~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 240 (379)
+++|+|+++..|..+. ....++||+++|+.|.+.+..+. .+ ......+|++|++++.+..+.... .... ...
T Consensus 156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~--~~~~~~ae~lK~~~~~~~~~~~~~--~~~v-~g~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KL--LIGERTAEEIKIKIGTAFPGAREE--EMEI-RGR 227 (336)
T ss_pred CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-ch--hcCHHHHHHHHHHhcccccccCCc--EEEE-ecc
Confidence 9999999999997773 34689999999999999986432 22 123456999999988764331100 0000 000
Q ss_pred cceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-CeEeecCCCCCCCHHHHHHH
Q 017011 241 DKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYG-NVVLSGGTSLIPGLPDRLAK 319 (379)
Q Consensus 241 ~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~-nIil~GG~s~i~G~~~rl~~ 319 (379)
.....+|. .+.+..+++. |+++.+ ...+.+.|.+++.+++.+++...++ +|+||||+|++||+.++|++
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 00001111 2333333332 554433 1257888899999999888888888 79999999999999999999
Q ss_pred HHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 320 ELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 320 eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
++.. .+....+|..++..||++++.-
T Consensus 298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 298 ETKV--------PVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHCC--------CceecCCHHHHHHHHHHHHHhc
Confidence 9942 3344567899999999998753
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.2e-27 Score=211.88 Aligned_cols=313 Identities=18% Similarity=0.227 Sum_probs=232.7
Q ss_pred CCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc----cCCeeeeccccCCcccCHH
Q 017011 9 FRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK----RGVLRLSHPVNRGMVRDWD 84 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~----~~~~~~~~p~~~g~i~~~~ 84 (379)
.+.|-||+||.+|++-.- +..-....||.++..+.. ....-+.+|++|+.+ .+.....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV~~k-~kgIVl~ePSVVAi~~~~-----~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVYVK-GKGIVLNEPSVVAIESEG-----KTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEEEc-CceEEecCceEEEEeecC-----CCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 458999999999999444 333344568888765421 122346799999987 4567889999999999999
Q ss_pred HHHHHHHHHHhhhccCCC--CCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEE
Q 017011 85 AMERLWEHIFDKELRVTI--EEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVM 157 (379)
Q Consensus 85 ~~~~~l~~~~~~~l~~~~--~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV 157 (379)
..+.+++|.+.+..+-.. ..-.++++.|.-.+...|+++.+.+ +..+...|+++++|.+|++++|. +...||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 999999999955543332 3445999999999999999988887 67899999999999999999986 358999
Q ss_pred eCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccC
Q 017011 158 DSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKES 237 (379)
Q Consensus 158 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 237 (379)
|||+++|.|+.+..|-.+ ...+..+||+.+++.+.+++.+++.- ..-...+|++|.+..++.++...+..+..-
T Consensus 159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl---~IGe~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNL---LIGERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCe---eecHHHHHHHHHHhcccccccCCccceeeE-
Confidence 999999999999999888 66678999999999999999765433 334556999999999877532221100000
Q ss_pred CCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcC-eEeecCCCCCCCHHHH
Q 017011 238 SQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGN-VVLSGGTSLIPGLPDR 316 (379)
Q Consensus 238 ~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~n-Iil~GG~s~i~G~~~r 316 (379)
......-.+|....++-...+-...|.+ ..|.+++...+.++|+++-....++ |++|||+|++.|+.+.
T Consensus 233 ~Grdl~~GlPk~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~ 302 (342)
T COG1077 233 RGRDLVTGLPKTITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302 (342)
T ss_pred EeeecccCCCeeEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence 0000011122222222222222233333 2588899999999999999999999 9999999999999999
Q ss_pred HHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 317 LAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 317 l~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
+.++. .+.|+-.++|..++.+|+.....
T Consensus 303 i~~et--------~~pv~ia~~pL~~Va~G~G~~le 330 (342)
T COG1077 303 LSEET--------GVPVIIADDPLTCVAKGTGKALE 330 (342)
T ss_pred HHhcc--------CCeEEECCChHHHHHhccchhhh
Confidence 99988 56777778888888888665444
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.89 E-value=6.5e-22 Score=176.46 Aligned_cols=209 Identities=19% Similarity=0.229 Sum_probs=160.7
Q ss_pred ccccCCcccCHHHHHHHHHHHHhhh-ccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC
Q 017011 73 HPVNRGMVRDWDAMERLWEHIFDKE-LRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR 151 (379)
Q Consensus 73 ~p~~~g~i~~~~~~~~~l~~~~~~~-l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~ 151 (379)
.|+.+|.|.|++..+.+++++.... -.....-..++++.|..++..+|+.+.+.+ +..|++.+.++++|+|++++++.
T Consensus 29 ~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~~ 107 (239)
T TIGR02529 29 DVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQI 107 (239)
T ss_pred ccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhcC
Confidence 6899999999999999999998421 111223468999999999999998877665 78899999999999999999888
Q ss_pred ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHH
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKEL 231 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~ 231 (379)
...+|+|+|+++|+++.+.+|.++ ..+..++||+++++.+.+.+ ..+.+.+|++|.+... ..+.
T Consensus 108 ~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~---------~i~~~~AE~~K~~~~~-----~~~~ 171 (239)
T TIGR02529 108 KNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAY---------GISFEEAEEYKRGHKD-----EEEI 171 (239)
T ss_pred CCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHh---------CCCHHHHHHHHHhcCC-----HHHH
Confidence 888999999999999999999888 56778999999999998776 2355779999987542 1111
Q ss_pred HhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCC
Q 017011 232 AMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIP 311 (379)
Q Consensus 232 ~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~ 311 (379)
. ...+.+. ..+.+.|.+++.+.++ +.|+||||+|++|
T Consensus 172 ~---------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ip 208 (239)
T TIGR02529 172 F---------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFS 208 (239)
T ss_pred H---------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcch
Confidence 0 0001111 1244555555554433 4799999999999
Q ss_pred CHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhh
Q 017011 312 GLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSI 349 (379)
Q Consensus 312 G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi 349 (379)
|+.++|++.+. +++..+.+|.+++..|+++
T Consensus 209 gl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 209 GFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 99999999994 2344567899999999874
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.86 E-value=7.1e-20 Score=166.20 Aligned_cols=243 Identities=17% Similarity=0.181 Sum_probs=174.9
Q ss_pred CCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHHH
Q 017011 7 YEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAM 86 (379)
Q Consensus 7 ~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~~ 86 (379)
..+-.++||+||.++|+-.. +..+. .++ +|. ..+.+++.|.+.|++..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence 34556999999999997554 32222 111 121 23468899999999999
Q ss_pred HHHHHHHHhh---hccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCc
Q 017011 87 ERLWEHIFDK---ELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGV 163 (379)
Q Consensus 87 ~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 163 (379)
.+.++++... .++.. -..++++.|...+..++..+.++ .+..|++...++.++.+++.+++...++|||+|+++
T Consensus 70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~-~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt 146 (267)
T PRK15080 70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINV-VESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT 146 (267)
T ss_pred HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHH-HHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence 9999888731 33332 45678889988877788887744 588999999999999999998887778999999999
Q ss_pred EEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcce
Q 017011 164 THVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQ 243 (379)
Q Consensus 164 t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (379)
|+++.+.+|.++ .....++||+++++.+.+.+ ..+.+.+|.+|.+... .+++.
T Consensus 147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l---------~i~~~eAE~lK~~~~~-----~~~~~----------- 199 (267)
T PRK15080 147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAY---------GISFEEAEQYKRDPKH-----HKEIF----------- 199 (267)
T ss_pred EEEEEEECCeEE--EEecccCchHHHHHHHHHHh---------CCCHHHHHHHHhccCC-----HHHHH-----------
Confidence 999999999887 55678999999999998887 2345678888876431 01100
Q ss_pred EEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhh
Q 017011 244 YELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCN 323 (379)
Q Consensus 244 ~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~ 323 (379)
.+.+.++ ..+.+.+.+.+.+. -.+.|+||||+|++||+.+.+++.+..
T Consensus 200 ----------------~ii~~~~---------~~i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~ 247 (267)
T PRK15080 200 ----------------PVVKPVV---------EKMASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL 247 (267)
T ss_pred ----------------HHHHHHH---------HHHHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence 0000000 01334444444332 346899999999999999999999943
Q ss_pred cCCCCceEEEECCCCCccceeehhhhhh
Q 017011 324 LASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 324 ~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.+..+.+|.+++-.|+++|+
T Consensus 248 --------~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 --------PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred --------CcccCCCchHHHHHHHHhhC
Confidence 23346789999999998874
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.82 E-value=2.6e-19 Score=181.10 Aligned_cols=306 Identities=18% Similarity=0.204 Sum_probs=184.0
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc------cCCeeeec----------
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK------RGVLRLSH---------- 73 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~------~~~~~~~~---------- 73 (379)
.+|-||+||.++++++..+..|. ++++..+....+++..-....+.++|+.|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPT-VIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEE-EEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 58999999999999998666665 33433333322222111122346788776542 00111111
Q ss_pred ------cc----------------cCCcccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhh
Q 017011 74 ------PV----------------NRGMVRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMF 128 (379)
Q Consensus 74 ------p~----------------~~g~i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lf 128 (379)
|+ ....+...+....+++++.. ..++ ..-..+++++|.+++..+|+.+.+.+
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg--~~v~~~VItVPa~f~~~qR~a~~~Aa- 158 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLG--ETVTQAVITVPAYFNDSQRQATKDAG- 158 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-
Confidence 11 11112334445555655542 1222 22366999999999999999987776
Q ss_pred ccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecCee---cccceEEecccHHHHHHHHHHHHhhC
Q 017011 129 EGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEGYA---LPHAIQRLELAGKDLTDYLTTNLTKD 200 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG~~---~~~~~~~~~~GG~~i~~~l~~~l~~~ 200 (379)
+..|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+..+.. +..+....++||.++|+.|.+++..+
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~ 238 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE 238 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHH
Confidence 78899999999999999998875 36899999999999998764421 22233456999999999999887542
Q ss_pred -----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccC------C-cee--ccCcccc-c
Q 017011 201 -----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPD------G-QVI--TIGAAQF-K 260 (379)
Q Consensus 201 -----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~------~-~~i--~i~~~~~-~ 260 (379)
+.++.... -...+|.+|+.++... ...+.+|. + ..+ .+..++| .
T Consensus 239 ~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~ 302 (621)
T CHL00094 239 FKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKTLTRAKFEE 302 (621)
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEEEcHHHHHH
Confidence 22221110 1234666776655311 11222221 1 112 2222222 1
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCc
Q 017011 261 GPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRL 340 (379)
Q Consensus 261 ~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~ 340 (379)
..+.++. .+...|.+++.+. .+...-++.|+|+||+|++|++++.|++.+.. .+....+|+
T Consensus 303 l~~~l~~---------~~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pd 363 (621)
T CHL00094 303 LCSDLIN---------RCRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPD 363 (621)
T ss_pred HHHHHHH---------HHHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCch
Confidence 1121221 1333344444433 22234568899999999999999999987743 123445789
Q ss_pred cceeehhhhhhccc
Q 017011 341 HSVWIGGSILASLS 354 (379)
Q Consensus 341 ~~~w~Gasi~a~l~ 354 (379)
.++..||+++|...
T Consensus 364 eava~GAA~~aa~l 377 (621)
T CHL00094 364 EVVAIGAAVQAGVL 377 (621)
T ss_pred hHHHhhhHHHHHHh
Confidence 99999999998753
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.82 E-value=3.6e-19 Score=180.74 Aligned_cols=214 Identities=19% Similarity=0.244 Sum_probs=143.1
Q ss_pred CCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-c
Q 017011 104 EHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-L 175 (379)
Q Consensus 104 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~ 175 (379)
-..+|+++|++++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 467999999999999999987766 78899999999999999999875 3789999999999998774 5533 2
Q ss_pred ccceEEecccHHHHHHHHHHHHhhC-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEE
Q 017011 176 PHAIQRLELAGKDLTDYLTTNLTKD-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYE 245 (379)
Q Consensus 176 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
..+.....+||.++|+.|.+++..+ +.++.... -...+|.+|+.++... ...+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~----------------~~~i~ 316 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT----------------QTEIN 316 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEE
Confidence 2333456899999999999888643 11211110 1234566666654211 11122
Q ss_pred cc----C--C-c--eeccCcccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHH
Q 017011 246 LP----D--G-Q--VITIGAAQF-KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPD 315 (379)
Q Consensus 246 lp----~--~-~--~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~ 315 (379)
+| | | . .+.+..+.| ...+.+|. .+.+.|.+++.+.. +.+.-++.|+|+||+|++|++++
T Consensus 317 i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~ 385 (663)
T PTZ00400 317 LPFITADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSE 385 (663)
T ss_pred EEeeccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHH
Confidence 21 1 1 1 223333333 22222332 24455555555442 22344688999999999999999
Q ss_pred HHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 316 RLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 316 rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.|++.+.. .+....+|+.++..||+++|..
T Consensus 386 ~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 386 TVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 99888742 1234568899999999999875
No 28
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.81 E-value=3.5e-19 Score=180.91 Aligned_cols=307 Identities=17% Similarity=0.176 Sum_probs=184.9
Q ss_pred CCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc------cCCeeeec---------
Q 017011 9 FRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK------RGVLRLSH--------- 73 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~------~~~~~~~~--------- 73 (379)
..+|-||+||.++.+++..+..|. ++++..+....+++..-......++|+.|... +..+.+++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 117 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 117 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEE-EEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchh
Confidence 358999999999999998666665 33443333322222111112246788776642 00111111
Q ss_pred -------cc----------------cCCcccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHh
Q 017011 74 -------PV----------------NRGMVRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIM 127 (379)
Q Consensus 74 -------p~----------------~~g~i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~l 127 (379)
|+ ....+...+....+|+++.. +.++ ..-..+||++|.+++..+|+.+.+.+
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 11 11122334455566666552 1232 23467999999999999999977765
Q ss_pred hccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecC--ee-cccceEEecccHHHHHHHHHHHHhh
Q 017011 128 FEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEG--YA-LPHAIQRLELAGKDLTDYLTTNLTK 199 (379)
Q Consensus 128 fe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG--~~-~~~~~~~~~~GG~~i~~~l~~~l~~ 199 (379)
+..|++.+.++++|+||++++|. .+-+|+|+|+++++|+.+.-+ .. +..+....++||.++|+.|.+++..
T Consensus 196 -~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 196 -RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred -HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 78899999999999999998864 378999999999999877533 21 2223335689999999999988754
Q ss_pred C-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc------CC-ceec--cCcccc-
Q 017011 200 D-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP------DG-QVIT--IGAAQF- 259 (379)
Q Consensus 200 ~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp------~~-~~i~--i~~~~~- 259 (379)
+ +.+..... -...+|+.|+.++... ...+.+| ++ ..+. +..+.|
T Consensus 275 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe 338 (673)
T PLN03184 275 NFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTTLTRAKFE 338 (673)
T ss_pred HHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEEECHHHHH
Confidence 2 11111110 1234566666654321 1112221 11 1222 333332
Q ss_pred cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCC
Q 017011 260 KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQR 339 (379)
Q Consensus 260 ~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~ 339 (379)
...+.+++ .+.+.|.+++.....+ ..-++.|+|+||+|+||.++++|++.+... +....+|
T Consensus 339 ~l~~~l~~---------r~~~~i~~~L~~a~~~--~~dId~ViLvGGssriP~V~~~i~~~fg~~--------~~~~~np 399 (673)
T PLN03184 339 ELCSDLLD---------RCKTPVENALRDAKLS--FKDIDEVILVGGSTRIPAVQELVKKLTGKD--------PNVTVNP 399 (673)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHcCCC--hhHccEEEEECCccccHHHHHHHHHHhCCC--------cccccCc
Confidence 12222222 2444455555444322 234588999999999999999998887421 2234578
Q ss_pred ccceeehhhhhhccc
Q 017011 340 LHSVWIGGSILASLS 354 (379)
Q Consensus 340 ~~~~w~Gasi~a~l~ 354 (379)
+.++..||+++|...
T Consensus 400 deaVA~GAAi~aa~l 414 (673)
T PLN03184 400 DEVVALGAAVQAGVL 414 (673)
T ss_pred chHHHHHHHHHHHHh
Confidence 999999999998753
No 29
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.81 E-value=3.9e-19 Score=178.77 Aligned_cols=298 Identities=19% Similarity=0.199 Sum_probs=182.0
Q ss_pred cEEEeCCCceEEEEecCCCCCCC--------CCCceeEecCCCCccccCCCcceeecchhhhc---c---CCeeee----
Q 017011 11 SIVCDSGSGSVKTGFAGDDAPCV--------VFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK---R---GVLRLS---- 72 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P~~--------~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~---~---~~~~~~---- 72 (379)
+|-||+||+++.+++..+..|.+ .+||+++.. .....++|..|... + ....++
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~---------~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYL---------KDGGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEe---------CCCCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 47899999999999986655442 345554432 12247888887542 0 001111
Q ss_pred -----------ccc--------------cCCcccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHH
Q 017011 73 -----------HPV--------------NRGMVRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMV 124 (379)
Q Consensus 73 -----------~p~--------------~~g~i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~ 124 (379)
+|+ ..+.+...+....+++++.. +.++. .-..+|+++|++++..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHH
Confidence 122 12223334444555555542 22332 2467999999999999999987
Q ss_pred HHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHH
Q 017011 125 EIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTN 196 (379)
Q Consensus 125 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~ 196 (379)
+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 775 88999999999999999998763 4689999999999998774 3422 2223334689999999999999
Q ss_pred HhhCC-CcccchhH-----HHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceec--cCcccc-cccccccC
Q 017011 197 LTKDG-YIFTTSAE-----REIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVIT--IGAAQF-KGPEVLFD 267 (379)
Q Consensus 197 l~~~~-~~~~~~~~-----~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~--i~~~~~-~~~E~lF~ 267 (379)
+.++. .+...... ...++..|+.++.. ......+.. ++.... +..+.| .+.+.++.
T Consensus 229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~ 293 (599)
T TIGR01991 229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQ 293 (599)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHH
Confidence 87542 22111111 12344555544321 011112222 232222 333222 12222221
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehh
Q 017011 268 PSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGG 347 (379)
Q Consensus 268 p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Ga 347 (379)
.+.+.|.+++.... +...-++.|+|+||+|++|++++++++.+... +....+|+.++..||
T Consensus 294 ---------~i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~~--------~~~~~npdeaVA~GA 354 (599)
T TIGR01991 294 ---------KTLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQE--------PLTDIDPDQVVALGA 354 (599)
T ss_pred ---------HHHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCCC--------CCCCCCCcHHHHHHH
Confidence 24444445554432 22344678999999999999999999877431 234568899999999
Q ss_pred hhhhccc
Q 017011 348 SILASLS 354 (379)
Q Consensus 348 si~a~l~ 354 (379)
+++|...
T Consensus 355 ai~a~~l 361 (599)
T TIGR01991 355 AIQADLL 361 (599)
T ss_pred HHHHHHh
Confidence 9998753
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.81 E-value=6.1e-19 Score=176.40 Aligned_cols=297 Identities=16% Similarity=0.187 Sum_probs=179.1
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhh--h--c---cCC---------ee-ee
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQ--A--K---RGV---------LR-LS 72 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~--~--~---~~~---------~~-~~ 72 (379)
.+|-||+||++..+++..+..|. ++++..+....+++. +......++|+.|. + + +.. +. ++
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~-ii~n~~g~~~tPS~V-~f~~~~~~vG~~Ati~~~KrliG~~~~~~~~~~~~~~~~k 97 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVK-VIKSIDDKELIPTTI-DFTSNNFTIGNNKGLRSIKRLFGKTLKEILNTPALFSLVK 97 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeE-EEECCCCCeecCeEE-EEcCCCEEECchhhHHHHHHHhCCCchhhccchhhHhhhh
Confidence 37999999999999998554443 333332222222211 11122356775541 0 0 000 00 00
Q ss_pred ---------cccc-CCc-ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEee
Q 017011 73 ---------HPVN-RGM-VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYV 138 (379)
Q Consensus 73 ---------~p~~-~g~-i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~ 138 (379)
.++. .|. ....+....+++++-. ..++ ..-..+|+++|.+++..+|+.+.+.+ +..|++.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~l 174 (595)
T PRK01433 98 DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLK--TNITKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRL 174 (595)
T ss_pred heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCcceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEE
Confidence 0111 111 2223444445555442 1222 23467999999999999999977775 7889999999
Q ss_pred ecchhhhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhCCCcccchhHH
Q 017011 139 AIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAER 210 (379)
Q Consensus 139 ~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~ 210 (379)
+++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.+++..|.+++..+...-......
T Consensus 175 i~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~ 254 (595)
T PRK01433 175 IAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTL 254 (595)
T ss_pred ecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999999874 3579999999999998774 4422 222333468999999999999987543111111123
Q ss_pred HHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccc-cccccccCCCCCCCCCCCHHHHHHHHHHhC
Q 017011 211 EIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQF-KGPEVLFDPSRMGLETEGAHEILVRAIMRS 289 (379)
Q Consensus 211 ~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~ 289 (379)
..++..|+.++.-. .+.. ..+.+..+.| ...+.+|. .+.+.+.+++...
T Consensus 255 ~~~ekaK~~LS~~~------------------~~~~---~~~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a 304 (595)
T PRK01433 255 QLAKKAKETLTYKD------------------SFNN---DNISINKQTLEQLILPLVE---------RTINIAQECLEQA 304 (595)
T ss_pred HHHHHHHHhcCCCc------------------cccc---ceEEEcHHHHHHHHHHHHH---------HHHHHHHHHHhhc
Confidence 34666776654311 0111 1333443333 22233332 2444555555444
Q ss_pred CHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 290 DMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 290 ~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
. ..-++.|+|+||+|++|.+++.|++.+.. ++..+.+|+.++..||+++|..
T Consensus 305 ~----~~~Id~ViLvGGssriP~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 305 G----NPNIDGVILVGGATRIPLIKDELYKAFKV--------DILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred C----cccCcEEEEECCcccChhHHHHHHHHhCC--------CceecCCchHHHHHHHHHHHHH
Confidence 3 23367899999999999999998877632 2344568899999999999875
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.81 E-value=3.9e-19 Score=180.27 Aligned_cols=305 Identities=17% Similarity=0.201 Sum_probs=181.1
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc---c---CCeeeec----------
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK---R---GVLRLSH---------- 73 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~---~---~~~~~~~---------- 73 (379)
.+|-||+||.++++++..+..|. ++++..+....+++..-......++|++|... + ..+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 81 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPK-VIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQ 81 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEE-EEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHH
Confidence 57999999999999998665554 33332222222221111112346788877643 0 0111111
Q ss_pred ------ccc-------------CCcccC-HHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhcc
Q 017011 74 ------PVN-------------RGMVRD-WDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEG 130 (379)
Q Consensus 74 ------p~~-------------~g~i~~-~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 130 (379)
|++ .|.... .+....+++++.. +.++ ..-..+++++|.+++..+|+.+.+.+ +.
T Consensus 82 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g--~~v~~~VItVPa~f~~~qR~a~~~Aa-~~ 158 (627)
T PRK00290 82 KDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLG--EKVTEAVITVPAYFNDAQRQATKDAG-KI 158 (627)
T ss_pred HHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCceEEEEECCCCCHHHHHHHHHHH-HH
Confidence 110 111112 2333444444431 2232 22357999999999999999987666 78
Q ss_pred CCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecC--e-ecccceEEecccHHHHHHHHHHHHhhC--
Q 017011 131 FEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEG--Y-ALPHAIQRLELAGKDLTDYLTTNLTKD-- 200 (379)
Q Consensus 131 ~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG--~-~~~~~~~~~~~GG~~i~~~l~~~l~~~-- 200 (379)
.|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+.-+ . .+..+....++||.++++.|.+++..+
T Consensus 159 AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 238 (627)
T PRK00290 159 AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFK 238 (627)
T ss_pred cCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHH
Confidence 899999999999999998864 578999999999999877533 1 122233446899999999999887542
Q ss_pred ---CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc----C--C-c--eeccCcccc-ccc
Q 017011 201 ---GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP----D--G-Q--VITIGAAQF-KGP 262 (379)
Q Consensus 201 ---~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~--~-~--~i~i~~~~~-~~~ 262 (379)
+.++.... -...++.+|+.++.. ....+.+| | | . .+.+..+.| ...
T Consensus 239 ~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~ 302 (627)
T PRK00290 239 KENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINLPFITADASGPKHLEIKLTRAKFEELT 302 (627)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEEeecccCCCCCeEEEEEECHHHHHHHH
Confidence 12221110 123456666655421 11122221 1 1 1 223333332 122
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccc
Q 017011 263 EVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHS 342 (379)
Q Consensus 263 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~ 342 (379)
+.++. .+.+.|.+++..... ...-++.|+|+||+|++|.++++|++.+.. .+....+|+.+
T Consensus 303 ~~l~~---------~~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdea 363 (627)
T PRK00290 303 EDLVE---------RTIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPNKGVNPDEV 363 (627)
T ss_pred HHHHH---------HHHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCCcCcCChHH
Confidence 22221 244455555544432 233467899999999999999999887732 12345678999
Q ss_pred eeehhhhhhcc
Q 017011 343 VWIGGSILASL 353 (379)
Q Consensus 343 ~w~Gasi~a~l 353 (379)
+..||+++|..
T Consensus 364 va~GAa~~aa~ 374 (627)
T PRK00290 364 VAIGAAIQGGV 374 (627)
T ss_pred HHHhHHHHHHH
Confidence 99999999875
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.80 E-value=4.6e-19 Score=179.11 Aligned_cols=304 Identities=17% Similarity=0.219 Sum_probs=180.7
Q ss_pred cEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc---c---CCeeeeccccC-------
Q 017011 11 SIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK---R---GVLRLSHPVNR------- 77 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~---~---~~~~~~~p~~~------- 77 (379)
+|-||+||.++++++..+..|. ++++..+....+++..-......++|++|... + ....+++-+..
T Consensus 2 viGIDlGtt~s~va~~~~g~~~-ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPV-VIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEE-EEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 6889999999999998666665 33333232222222111112247888887643 1 11111111110
Q ss_pred ---------------------CcccC-HHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCC
Q 017011 78 ---------------------GMVRD-WDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFE 132 (379)
Q Consensus 78 ---------------------g~i~~-~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~ 132 (379)
|.... .+....+++++.. ..++ ..-..+++++|++++..+|+.+.+.+ +..|
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~--~~v~~~VItVPa~f~~~qR~a~~~Aa-~~AG 157 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLG--EKVTEAVITVPAYFNDAQRQATKDAG-KIAG 157 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcC
Confidence 11112 2333444444431 2222 22357999999999999999987765 7789
Q ss_pred CCeEeeecchhhhhhccCC------ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhC---
Q 017011 133 IPATYVAIQAVLSLYASGR------TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD--- 200 (379)
Q Consensus 133 ~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~--- 200 (379)
++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++|+.|.+++..+
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 9999999999999998763 4689999999999998764 3322 22333346899999999998887532
Q ss_pred --CCcccch-h----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc----C--C-c--eeccCcccc-cccc
Q 017011 201 --GYIFTTS-A----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP----D--G-Q--VITIGAAQF-KGPE 263 (379)
Q Consensus 201 --~~~~~~~-~----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~--~-~--~i~i~~~~~-~~~E 263 (379)
+.++... . -...+|.+|+.++... ...+.+| | | . .+.+..+.| ...+
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~ 301 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVL----------------STEINLPFITADASGPKHLEMTLTRAKFEELTA 301 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEeeecccCCCCCeeEEEEEeHHHHHHHHH
Confidence 1111111 0 1234566666654211 1112221 1 1 1 223333332 1222
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccce
Q 017011 264 VLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSV 343 (379)
Q Consensus 264 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~ 343 (379)
.++. .+.+.|.+++.... +...-++.|+|+||+|++|.+.+.+++.+.. .+....+|+.++
T Consensus 302 ~l~~---------~~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~~~~pdeav 362 (595)
T TIGR02350 302 DLVE---------RTKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNKSVNPDEVV 362 (595)
T ss_pred HHHH---------HHHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccCCcCcHHHH
Confidence 2222 24444555554432 2234467899999999999999999887742 234556889999
Q ss_pred eehhhhhhcc
Q 017011 344 WIGGSILASL 353 (379)
Q Consensus 344 w~Gasi~a~l 353 (379)
..||+++|..
T Consensus 363 a~GAa~~aa~ 372 (595)
T TIGR02350 363 AIGAAIQGGV 372 (595)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 33
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=9.1e-19 Score=177.64 Aligned_cols=307 Identities=18% Similarity=0.199 Sum_probs=180.2
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc------cCCeeeecccc-------
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK------RGVLRLSHPVN------- 76 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~------~~~~~~~~p~~------- 76 (379)
.+|-||+||.++.+++..+..|. ++++..+....+++..-......++|+.|... +..+.+++-+.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~-ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPI-VIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEE-EEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 57999999999999998665554 33332222222221111112346788877642 11111111111
Q ss_pred --------------CC--------cccCH-HHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhcc
Q 017011 77 --------------RG--------MVRDW-DAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEG 130 (379)
Q Consensus 77 --------------~g--------~i~~~-~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 130 (379)
+| ..... +....+++++.. +.++ ..-..+||++|++++..+|+.+.+.+ +.
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~Aa-~~ 158 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLG--EPVTQAVITVPAYFTDAQRQATKDAG-TI 158 (653)
T ss_pred HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhC--CCcceEEEEECCCCCcHHHHHHHHHH-HH
Confidence 11 11122 222333444331 2232 22467999999999999999987765 78
Q ss_pred CCCCeEeeecchhhhhhccCC------ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhC-
Q 017011 131 FEIPATYVAIQAVLSLYASGR------TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD- 200 (379)
Q Consensus 131 ~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~- 200 (379)
.|++.+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++..+
T Consensus 159 AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f 238 (653)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238 (653)
T ss_pred cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHH
Confidence 899999999999999998864 3579999999999998664 3322 22233346899999999998888542
Q ss_pred ----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc----C---Cc--eeccCcccc-cc
Q 017011 201 ----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP----D---GQ--VITIGAAQF-KG 261 (379)
Q Consensus 201 ----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~---~~--~i~i~~~~~-~~ 261 (379)
+.++.... -...+|+.|+.++.. ....+.+| + +. .+.+..+.| ..
T Consensus 239 ~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~----------------~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l 302 (653)
T PRK13411 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSM----------------LTTSINLPFITADETGPKHLEMELTRAKFEEL 302 (653)
T ss_pred HHhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEEeeeccCCCCCeeEEEEEcHHHHHHH
Confidence 12221111 123455566655421 11122221 1 11 223333332 12
Q ss_pred cccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCcc
Q 017011 262 PEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLH 341 (379)
Q Consensus 262 ~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~ 341 (379)
.+.+|. .+.+.|.+++.... +...-++.|+|+||+|++|.++++|++.+... .+..+.+|+.
T Consensus 303 ~~~l~~---------~~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~~~npde 364 (653)
T PRK13411 303 TKDLVE---------ATIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDRSVNPDE 364 (653)
T ss_pred HHHHHH---------HHHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHHHHcCCc-------CcCCCCCchH
Confidence 222221 24445555554432 33445678999999999999999998776421 2334567899
Q ss_pred ceeehhhhhhccc
Q 017011 342 SVWIGGSILASLS 354 (379)
Q Consensus 342 ~~w~Gasi~a~l~ 354 (379)
++..||+++|...
T Consensus 365 aVA~GAAi~aa~l 377 (653)
T PRK13411 365 AVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 34
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.80 E-value=7.8e-19 Score=177.02 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=179.1
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc---c---CCeeee-----------
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK---R---GVLRLS----------- 72 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~---~---~~~~~~----------- 72 (379)
.+|-||+||+++.+++..+..|. ++|+..+....+++ .+......++|.+|... + ....++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~-ii~n~~g~~~~PS~-V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAE-VLPDEQGRVLLPSV-VRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADIQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEE-EEEcCCCCeecCeE-EEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhhh
Confidence 56999999999999998655554 22332222222221 11122237788877542 0 000000
Q ss_pred -----ccc--------------cCCcccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhcc
Q 017011 73 -----HPV--------------NRGMVRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEG 130 (379)
Q Consensus 73 -----~p~--------------~~g~i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~ 130 (379)
+|+ ..+.+...+....+++++.. +.++ ..-..+|+++|++++..+|+.+.+.+ +.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~Aa-~~ 174 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLG--GELDGAVITVPAYFDDAQRQATKDAA-RL 174 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhC--CCcceEEEEECCCCCHHHHHHHHHHH-HH
Confidence 111 11222233444455555542 1232 23467999999999999999987665 88
Q ss_pred CCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhCC-
Q 017011 131 FEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKDG- 201 (379)
Q Consensus 131 ~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~- 201 (379)
.|++.+.++++|.||+++++. .+-+|+|+|+++++|+.+. .|.. +..+.....+||.++++.|.+++.++.
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 999999999999999988764 3679999999999998775 3322 223334468999999999999887542
Q ss_pred Ccccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccc-cccccccCCCCCCCCC
Q 017011 202 YIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQF-KGPEVLFDPSRMGLET 275 (379)
Q Consensus 202 ~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~-~~~E~lF~p~~~~~~~ 275 (379)
.+..... -...++..|+.++.. ....+.+++.. -.+..+.| ...+.++.
T Consensus 255 ~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~~-------- 309 (616)
T PRK05183 255 LSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLVK-------- 309 (616)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHHH--------
Confidence 1211110 012345555544321 12223332211 01222222 12222221
Q ss_pred CCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 276 EGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 276 ~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.+.+.+.+++.+.. +...-++.|+|+||+|++|.+++.|++.+.. .+..+.+|+.++..||+++|..
T Consensus 310 -~~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 310 -RTLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred -HHHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHHH
Confidence 23344444444332 2223457899999999999999999887743 1234568899999999999875
No 35
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.79 E-value=3.1e-18 Score=172.80 Aligned_cols=306 Identities=17% Similarity=0.160 Sum_probs=183.3
Q ss_pred CCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc---c---CCeeee----------
Q 017011 9 FRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK---R---GVLRLS---------- 72 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~---~---~~~~~~---------- 72 (379)
..+|.||+||+++.+++..+..|. ++++..+....+++. +......++|+.|... + ..+.++
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~-ii~n~~g~r~tPS~V-~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKAR-VLENSEGFRTTPSVV-AFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceE-EeecCCCCcccceEE-EECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 358999999999999988655444 334433332222221 2223346788777542 0 001111
Q ss_pred --------cccc--------------CCcccCHH-HHHHHHHHHH---hhhccCCCCCCcEEEEcCCCCChhhHHHHHHH
Q 017011 73 --------HPVN--------------RGMVRDWD-AMERLWEHIF---DKELRVTIEEHPVLLTEPPLNPKINREKMVEI 126 (379)
Q Consensus 73 --------~p~~--------------~g~i~~~~-~~~~~l~~~~---~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~ 126 (379)
+|+. .|.....+ ....+++++- .+.++. .-..+|+++|.+++..+|+.+.+.
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~--~v~~aVITVPayF~~~qR~at~~A 182 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGH--KVSNAVVTCPAYFNDAQRQATKDA 182 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCC--ccceEEEEECCCCChHHHHHHHHH
Confidence 1221 12222222 2223334432 123332 246799999999999999997766
Q ss_pred hhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHh
Q 017011 127 MFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLT 198 (379)
Q Consensus 127 lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~ 198 (379)
+ +..|++.+.++++|+||++++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++|+.|.+++.
T Consensus 183 a-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 183 G-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred H-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHH
Confidence 5 78899999999999999998874 4789999999999998775 5643 333334579999999999988875
Q ss_pred hC-----CCcccch-h----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc------CC---ceeccCcccc
Q 017011 199 KD-----GYIFTTS-A----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP------DG---QVITIGAAQF 259 (379)
Q Consensus 199 ~~-----~~~~~~~-~----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp------~~---~~i~i~~~~~ 259 (379)
.+ +.++... . -...+|+.|+.++... ...+.+| ++ ..+.+..+.|
T Consensus 262 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~i~~~~~g~~~~~~~ItR~ef 325 (657)
T PTZ00186 262 EEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAM----------------ETEVNLPFITANADGAQHIQMHISRSKF 325 (657)
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCC----------------ceEEEEeeeccCCCCCcceEEEecHHHH
Confidence 42 1122111 0 1234666666654321 1112221 11 1223333333
Q ss_pred -cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCC
Q 017011 260 -KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQ 338 (379)
Q Consensus 260 -~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~ 338 (379)
...+.++. .+...+.+++.... +...-++.|+|+||+|+||.+++.+++.+... .....+
T Consensus 326 e~l~~~l~~---------r~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~~fg~~--------~~~~~n 386 (657)
T PTZ00186 326 EGITQRLIE---------RSIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKKFFQKD--------PFRGVN 386 (657)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHHHhCCC--------ccccCC
Confidence 12222221 13334444443332 22345678999999999999999999877431 123468
Q ss_pred Cccceeehhhhhhccc
Q 017011 339 RLHSVWIGGSILASLS 354 (379)
Q Consensus 339 ~~~~~w~Gasi~a~l~ 354 (379)
|+.++..||+++|..-
T Consensus 387 PdeaVA~GAAi~a~~l 402 (657)
T PTZ00186 387 PDEAVALGAATLGGVL 402 (657)
T ss_pred CchHHHHhHHHHHHHh
Confidence 8999999999998743
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=1.3e-18 Score=176.18 Aligned_cols=306 Identities=18% Similarity=0.196 Sum_probs=179.4
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc------cCCeeeec----------
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK------RGVLRLSH---------- 73 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~------~~~~~~~~---------- 73 (379)
.+|-||+||.++++++..+..|.. +++..+....+++..-......++|..|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~i-i~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~ 81 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVV-IANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELD 81 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEE-EECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhH
Confidence 579999999999999986655542 2332222222221111112347788877643 11111111
Q ss_pred ------ccc-----CC----------c-ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhh
Q 017011 74 ------PVN-----RG----------M-VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMF 128 (379)
Q Consensus 74 ------p~~-----~g----------~-i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lf 128 (379)
|+. +| . +.-.+....+++++.. ..++. .-..+||++|++++..+|+.+.+.+
T Consensus 82 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~Aa- 158 (668)
T PRK13410 82 PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE--PVTGAVITVPAYFNDSQRQATRDAG- 158 (668)
T ss_pred HhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-
Confidence 111 11 1 1112233334444331 22322 2357999999999999999877776
Q ss_pred ccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhC
Q 017011 129 EGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD 200 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~ 200 (379)
+..|++.+.++++|.|||+++|. .+-+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++..+
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~ 238 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQ 238 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHH
Confidence 78899999999999999998874 4689999999999998765 3422 22333446899999999998887542
Q ss_pred -----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc----C--C-cee--ccCcccc-c
Q 017011 201 -----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP----D--G-QVI--TIGAAQF-K 260 (379)
Q Consensus 201 -----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~--~-~~i--~i~~~~~-~ 260 (379)
+.++.... -...++++|+.++... ...+.+| + + ..+ .+..+.| .
T Consensus 239 f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~FE~ 302 (668)
T PRK13410 239 FLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS----------------VTDISLPFITATEDGPKHIETRLDRKQFES 302 (668)
T ss_pred HHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeeeecCCCCCeeEEEEECHHHHHH
Confidence 12221110 1224556666554211 1122222 1 1 112 2222222 1
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCc
Q 017011 261 GPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRL 340 (379)
Q Consensus 261 ~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~ 340 (379)
.++.++. .+.+.|.+++... .+.+.-++.|+|+||+|+||.+.+.+++.+.. .+....+|+
T Consensus 303 l~~~l~~---------r~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~l~~~fg~--------~~~~~~npd 363 (668)
T PRK13410 303 LCGDLLD---------RLLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR--------EPNQNVNPD 363 (668)
T ss_pred HHHHHHH---------HHHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHHHHHHcCC--------CcccCCCCc
Confidence 2222221 2444444444332 22334567899999999999999888876632 123445789
Q ss_pred cceeehhhhhhccc
Q 017011 341 HSVWIGGSILASLS 354 (379)
Q Consensus 341 ~~~w~Gasi~a~l~ 354 (379)
.++..||+++|...
T Consensus 364 eaVA~GAAi~aa~l 377 (668)
T PRK13410 364 EVVAVGAAIQAGIL 377 (668)
T ss_pred hHHHHhHHHHHHhh
Confidence 99999999998763
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.77 E-value=1.7e-17 Score=168.66 Aligned_cols=215 Identities=18% Similarity=0.222 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-------ceEEEEeCCCCcEEEEEee--cCee
Q 017011 104 EHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-------TTGIVMDSGEGVTHVVPIY--EGYA 174 (379)
Q Consensus 104 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~pv~--dG~~ 174 (379)
-..+||++|.+++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 467999999999999999977765 78899999999999999998753 4689999999999998764 4432
Q ss_pred -cccceEEecccHHHHHHHHHHHHhhC------CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcc
Q 017011 175 -LPHAIQRLELAGKDLTDYLTTNLTKD------GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDK 242 (379)
Q Consensus 175 -~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (379)
+..+.....+||.++|..|.+++..+ +.++.... -...+|++|+.++.. ...
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceE
Confidence 22223346899999999998888542 11221110 123455566555421 122
Q ss_pred eEEcc---CCce--eccCcccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHH
Q 017011 243 QYELP---DGQV--ITIGAAQF-KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDR 316 (379)
Q Consensus 243 ~~~lp---~~~~--i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~r 316 (379)
.+.++ ++.. +.+..+.| ..++.+|. .+.+.|.+++.....+ ..-++.|+|+||+|+||.+++.
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence 23332 2322 33333333 22233332 2445555666554322 3346789999999999999999
Q ss_pred HHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 317 LAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 317 l~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
|++.+... .+....+|+.++..||+++|..
T Consensus 352 i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 352 IKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 98777421 2234468899999999998874
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.71 E-value=1.8e-16 Score=153.49 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=110.8
Q ss_pred cEEEeCCCceEEEEecCCCCC--------CCCCCceeEecCCCCc-------------------------------cccC
Q 017011 11 SIVCDSGSGSVKTGFAGDDAP--------CVVFPSLIGQPRNKNS-------------------------------MIGI 51 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P--------~~~~p~~~~~~~~~~~-------------------------------~~~~ 51 (379)
.+-||+||++.-+++..+..| ...+||.++.+..... ....
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 478999999999999965433 2356666644211000 0001
Q ss_pred CCcceeecchhhhcc----CCe----eee-----ccccCCcccCHH-HHHHHHHHHHh---hhccCCCCCCcEEEEcCCC
Q 017011 52 GQKDMYFGDEAQAKR----GVL----RLS-----HPVNRGMVRDWD-AMERLWEHIFD---KELRVTIEEHPVLLTEPPL 114 (379)
Q Consensus 52 ~~~~~~vg~~a~~~~----~~~----~~~-----~p~~~g~i~~~~-~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~ 114 (379)
.....++|.+|.+.. +.- .++ .++..+.+...+ .+..+|.++-. ..++ ..-..+|++.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence 234577999887641 111 112 123323222222 22334444321 1222 2236799999998
Q ss_pred CC-----hhhHHH--HHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecC----------
Q 017011 115 NP-----KINREK--MVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEG---------- 172 (379)
Q Consensus 115 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG---------- 172 (379)
++ ..+|.. .+.-+.+..|++.+.++++|+||+++++. .+-+|+|+|+++++++.|.-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 86 556544 24555588999999999999999999873 478999999999999877522
Q ss_pred -eecccceEEecccHHHHHHHHH
Q 017011 173 -YALPHAIQRLELAGKDLTDYLT 194 (379)
Q Consensus 173 -~~~~~~~~~~~~GG~~i~~~l~ 194 (379)
.++. +. ...+||.++|+.|.
T Consensus 240 ~~vla-~~-G~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLG-HS-GQRIGGNDLDIALA 260 (450)
T ss_pred eeEEe-cC-CCCCChHHHHHHHH
Confidence 1221 11 24799999999996
No 39
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-15 Score=151.57 Aligned_cols=308 Identities=16% Similarity=0.191 Sum_probs=185.2
Q ss_pred CCCcEEEeCCCceEEEEecCCC-CCCCCCCceeEecCCCCccccCCCcceeecchhhhc------cCCeeeeccccCC--
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDD-APCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK------RGVLRLSHPVNRG-- 78 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~------~~~~~~~~p~~~g-- 78 (379)
...+|-||+||+++.+++.... .|. ++++..+.+..+++..-....+.++|..|... ...+.+++.+..+
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 3467999999999999999765 454 44544444433333222222358999988764 1234455555432
Q ss_pred ----------cccC-HHHHHHHHHHHHhhhcc--CCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhh
Q 017011 79 ----------MVRD-WDAMERLWEHIFDKELR--VTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLS 145 (379)
Q Consensus 79 ----------~i~~-~~~~~~~l~~~~~~~l~--~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a 145 (379)
.... .+....++.++- +... ....-..++++.|.+++..+|..+.+.. +..|++.+.++++|.||
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk-~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtAA 160 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLK-EDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTAA 160 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHH-HHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHH
Confidence 1111 222333444432 1111 1123477999999999999988876665 78999999999999999
Q ss_pred hhccCC-----ceEEEEeCCCCcEEEEEeec--C-eecccceEEecccHHHHHHHHHHHHhhC----C-Ccccchh-H--
Q 017011 146 LYASGR-----TTGIVMDSGEGVTHVVPIYE--G-YALPHAIQRLELAGKDLTDYLTTNLTKD----G-YIFTTSA-E-- 209 (379)
Q Consensus 146 ~~~~g~-----~~~lVVDiG~~~t~v~pv~d--G-~~~~~~~~~~~~GG~~i~~~l~~~l~~~----~-~~~~~~~-~-- 209 (379)
++++|. .+-+|+|+|+++++++.|.= | ..+..+.....+||++++..|..++..+ + .++.... .
T Consensus 161 Alayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~ 240 (579)
T COG0443 161 ALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQ 240 (579)
T ss_pred HHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHH
Confidence 999985 47899999999999987753 4 2234455668999999999998887543 1 2221111 1
Q ss_pred --HHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceecc--CcccccccccccCCCCCCCCCCCHHHHHHHH
Q 017011 210 --REIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITI--GAAQFKGPEVLFDPSRMGLETEGAHEILVRA 285 (379)
Q Consensus 210 --~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i--~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~ 285 (379)
.+.++..|+.++.... ....+..-++. +++ .-.|-...+. +.+++.++
T Consensus 241 rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~E~l-------------~~dll~r~ 292 (579)
T COG0443 241 RLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKFEEL-------------ILDLLERT 292 (579)
T ss_pred HHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHHHHH-------------HHHHHHHH
Confidence 1345555555443211 11111110111 111 1112222111 22333333
Q ss_pred HHhCC-----HHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 286 IMRSD-----MDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 286 i~~~~-----~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
+..+. ..+...-++-|+++||.++||=+.+.+.+.+.. ......+|+.++..||++.|...
T Consensus 293 ~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~--------~~~~~inpdeava~GAa~qa~~l 358 (579)
T COG0443 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGK--------EPEKSINPDEAVALGAAIQAAVL 358 (579)
T ss_pred HHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCc--------cccccCCccHHHHHHHHHHHHhh
Confidence 33222 122335566799999999999777777766641 23455688999999999988864
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.64 E-value=2.2e-16 Score=160.59 Aligned_cols=234 Identities=20% Similarity=0.243 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC------ceE
Q 017011 84 DAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR------TTG 154 (379)
Q Consensus 84 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~ 154 (379)
+....+++++.. +.++. .-..+++++|+.++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-
T Consensus 114 ~~~~~~l~~l~~~a~~~~~~--~~~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~v 190 (602)
T PF00012_consen 114 ELSAMILKYLKEMAEKYLGE--KVTDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTV 190 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--BEEEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEE
T ss_pred cccccchhhhcccchhhccc--ccccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccce
Confidence 444555555542 12222 1346999999999999999987776 78899999999999999987753 478
Q ss_pred EEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhC-----CCcccchh-----HHHHHHHHHHHcc
Q 017011 155 IVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD-----GYIFTTSA-----EREIVRDIKERLS 221 (379)
Q Consensus 155 lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~ 221 (379)
+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++..+ +.+..... -...++.+|+.++
T Consensus 191 lv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls 270 (602)
T PF00012_consen 191 LVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLS 270 (602)
T ss_dssp EEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTT
T ss_pred eccccccceEeeeehhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccc
Confidence 9999999999888774 4533 23334457899999999999988542 22221110 1123455555543
Q ss_pred cCccCHHHHHHhcccCCCCcceEEc----cCCceec--cCcccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHH
Q 017011 222 YVAMDFQKELAMSKESSQLDKQYEL----PDGQVIT--IGAAQF-KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVR 294 (379)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l----p~~~~i~--i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r 294 (379)
... .....+.+ +++..+. +..+.| ...+.++.. +.+.|.+++..... .
T Consensus 271 ~~~--------------~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~--~ 325 (602)
T PF00012_consen 271 SND--------------NTEITISIESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGL--K 325 (602)
T ss_dssp TSS--------------SSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----
T ss_pred ccc--------------ccccccccccccccccccccccccceecccccccccc---------cccccccccccccc--c
Confidence 210 11222222 2243333 333333 222333322 44555566655432 2
Q ss_pred HhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 295 REMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 295 ~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
..-++.|+|+||+|++|-+.+.|++.+.. .+....+|+.++..||+++|..
T Consensus 326 ~~~i~~V~lvGG~sr~p~v~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 326 KEDIDSVLLVGGSSRIPYVQEALKELFGK--------KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp GGGESEEEEESGGGGSHHHHHHHHHHTTS--------EEB-SS-TTTHHHHHHHHHHHH
T ss_pred ccccceeEEecCcccchhhhhhhhhcccc--------ccccccccccccccccccchhh
Confidence 34457899999999999888888776641 3345568899999999999874
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.63 E-value=8.3e-15 Score=141.72 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=135.0
Q ss_pred hhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHH
Q 017011 117 KINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTD 191 (379)
Q Consensus 117 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~ 191 (379)
....+.+.+ +++..|+....++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ ....+++||+++++
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHH
Confidence 344455555 5588999999999999999998753 358999999999999999999988 77889999999999
Q ss_pred HHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccC--C-ceeccCcccccccccccCC
Q 017011 192 YLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPD--G-QVITIGAAQFKGPEVLFDP 268 (379)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~--~-~~i~i~~~~~~~~E~lF~p 268 (379)
.+.+.| ..+.+.+|.+|.++.....+.. .....+.+++ + ....+. +....+++-..
T Consensus 242 dIa~~l---------~i~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~r 300 (420)
T PRK09472 242 DIAYAF---------GTPPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEPR 300 (420)
T ss_pred HHHHHh---------CcCHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHHH
Confidence 998777 2356789999988765432210 0112233321 1 101111 11111221100
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCHHHHH-----hhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEEC--------
Q 017011 269 SRMGLETEGAHEILVRAIMRSDMDVRR-----EMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVA-------- 335 (379)
Q Consensus 269 ~~~~~~~~~l~~~i~~~i~~~~~~~r~-----~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~-------- 335 (379)
...|.+.|.+++..++.+++. .+.+.|+||||+|+|||+.+.+++.+.. ++++..
T Consensus 301 ------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~ 368 (420)
T PRK09472 301 ------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLT 368 (420)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCCh
Confidence 012444555666666555543 3556699999999999999999988863 233321
Q ss_pred --CCCCccceeehhhhhhcc
Q 017011 336 --PPQRLHSVWIGGSILASL 353 (379)
Q Consensus 336 --~~~~~~~~w~Gasi~a~l 353 (379)
..+|.+++-.|...|+.-
T Consensus 369 ~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 369 DYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhcCCcHHHHHHHHHHHhhh
Confidence 137899999999998764
No 42
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.61 E-value=2.2e-14 Score=137.07 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=114.5
Q ss_pred ChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHH
Q 017011 116 PKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLT 190 (379)
Q Consensus 116 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~ 190 (379)
+....+.+.++ ++..|+..+.++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ ....+++||++++
T Consensus 156 ~~~~v~~~~~~-~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKC-VERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHH-HHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 44555565554 478899999999999999987643 367999999999999999999877 5677899999999
Q ss_pred HHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccC---CceeccCcccc-ccccccc
Q 017011 191 DYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPD---GQVITIGAAQF-KGPEVLF 266 (379)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~---~~~i~i~~~~~-~~~E~lF 266 (379)
+.+.+.+ ..+++.+|++|.+++....+. ......+.++. +....+..+.+ .+.+..+
T Consensus 233 ~~i~~~l---------~~~~~~AE~lK~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKAL---------RTPLEEAERIKIKYGCASIPL----------EGPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHh---------CCCHHHHHHHHHHeeEecccC----------CCCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 9998776 235677999999988643211 00112223321 11112211111 1111111
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHhCCHHHHHhhhcC-eEeecCCCCCCCHHHHHHHHHhh
Q 017011 267 DPSRMGLETEGAHEILV-RAIMRSDMDVRREMYGN-VVLSGGTSLIPGLPDRLAKELCN 323 (379)
Q Consensus 267 ~p~~~~~~~~~l~~~i~-~~i~~~~~~~r~~l~~n-Iil~GG~s~i~G~~~rl~~eL~~ 323 (379)
..+.+.|. +.+.+...+ . -+.+ |+||||+|++||+.+++.+.+..
T Consensus 294 ---------~ei~~~i~~~~L~~~~~~--~-~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 294 ---------EEILEIVKQKELRKSGFK--E-ELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred ---------HHHHHHHHHHHHHhcCCc--c-cCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 12444443 455444322 2 2344 99999999999999999999864
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.58 E-value=1.3e-13 Score=130.55 Aligned_cols=199 Identities=18% Similarity=0.249 Sum_probs=134.3
Q ss_pred hhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHH
Q 017011 117 KINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTD 191 (379)
Q Consensus 117 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~ 191 (379)
....+.|.+++ |+.+.....++-+|+|++.+.-. -++++||+|+++|+|+.+.+|.+. +...+|+||+++|.
T Consensus 164 ~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT~ 240 (418)
T COG0849 164 KNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVTK 240 (418)
T ss_pred hHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHHH
Confidence 44455555554 88899999999999999877643 389999999999999999999999 77789999999999
Q ss_pred HHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccC--Cce-eccCc------cccccc
Q 017011 192 YLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPD--GQV-ITIGA------AQFKGP 262 (379)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~--~~~-i~i~~------~~~~~~ 262 (379)
.+.+.| ..+++.||++|.++.....+.. .....+++|. +.. .++.. .+.+.+
T Consensus 241 DIa~~l---------~t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t~~~ls~II~aR~~ 301 (418)
T COG0849 241 DIAKGL---------KTPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVTRSELSEIIEARVE 301 (418)
T ss_pred HHHHHh---------CCCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhhHHHHHHHHHhhHH
Confidence 999998 4467889999999976543321 1223333331 111 11110 011233
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEEC----CCC
Q 017011 263 EVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVA----PPQ 338 (379)
Q Consensus 263 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~----~~~ 338 (379)
| +.+++...|++.-.. ..+...|+||||++++||+.+-.+.-+....+-.....+.. ..+
T Consensus 302 E--------------i~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 302 E--------------ILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred H--------------HHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccC
Confidence 3 333444444443222 56777899999999999999888877753221111111111 236
Q ss_pred Cccceeehhhhhhcc
Q 017011 339 RLHSVWIGGSILASL 353 (379)
Q Consensus 339 ~~~~~w~Gasi~a~l 353 (379)
|.|++..|.-.++..
T Consensus 366 p~fs~avGl~~~~~~ 380 (418)
T COG0849 366 PAFSTAVGLLLYGAL 380 (418)
T ss_pred chhhhhHHHHHHHhh
Confidence 899999999998885
No 44
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.3e-13 Score=120.71 Aligned_cols=222 Identities=18% Similarity=0.184 Sum_probs=133.6
Q ss_pred CCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC------ceEEEEeCCCCcEEEE--EeecCee-
Q 017011 104 EHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR------TTGIVMDSGEGVTHVV--PIYEGYA- 174 (379)
Q Consensus 104 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~--pv~dG~~- 174 (379)
-...+++.|.+++..+|++..+. ---.|.+.+.++++|.+|++++|. .+-+|.|+|+++.+|+ -|-+|+-
T Consensus 172 v~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFe 250 (663)
T KOG0100|consen 172 VTHAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFE 250 (663)
T ss_pred ccceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEE
Confidence 46789999999999999885443 355788999999999999999985 4889999999997766 4556643
Q ss_pred cccceEEecccHHHHHHHHHHHHhh-----CCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEc---
Q 017011 175 LPHAIQRLELAGKDLTDYLTTNLTK-----DGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYEL--- 246 (379)
Q Consensus 175 ~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 246 (379)
+..+.....+||.++++..++++-+ .+.++ ..+...+.+++++.- ..+-..+.+.....++
T Consensus 251 VlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv--~kdnkA~~KLrRe~E---------kAKRaLSsqhq~riEIeS~ 319 (663)
T KOG0100|consen 251 VLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDV--RKDNKAVQKLRREVE---------KAKRALSSQHQVRIEIESL 319 (663)
T ss_pred EEecCCCcccCccchHHHHHHHHHHHHhhhcCCcc--chhhHHHHHHHHHHH---------HHHhhhccccceEEeeeec
Confidence 3344456799999999998877632 12333 334445555555421 1111111122222222
Q ss_pred cCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhC--CHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhc
Q 017011 247 PDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRS--DMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNL 324 (379)
Q Consensus 247 p~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~--~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~ 324 (379)
-||...+-.-.|.++.|.= ..|...-++-+++. +.+++++-...|+|+||+++||- +++-|...
T Consensus 320 fdG~DfSEtLtRAkFEElN----------mDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPK----vQqllk~f 385 (663)
T KOG0100|consen 320 FDGVDFSETLTRAKFEELN----------MDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPK----VQQLLKDF 385 (663)
T ss_pred cccccccchhhhhHHHHhh----------hHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChh----HHHHHHHH
Confidence 1332222222233333320 01111111222222 45677778889999999999994 44444444
Q ss_pred CCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 325 ASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 325 ~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
+.-. +-...-+|+.++..||++-|..-
T Consensus 386 F~GK---epskGinPdEAVAYGAAVQaGvl 412 (663)
T KOG0100|consen 386 FNGK---EPSKGINPDEAVAYGAAVQAGVL 412 (663)
T ss_pred hCCC---CccCCCChHHHHHhhhhhhhccc
Confidence 3211 11123478889999999887643
No 45
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.1e-11 Score=116.48 Aligned_cols=215 Identities=18% Similarity=0.200 Sum_probs=138.6
Q ss_pred CcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-------ceEEEEeCCCCcEEEEEee--cCe-e
Q 017011 105 HPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-------TTGIVMDSGEGVTHVVPIY--EGY-A 174 (379)
Q Consensus 105 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~pv~--dG~-~ 174 (379)
..++++.|..++..+|..+-+.. ..+|++.+.++++|.||++++|. .+-+|.|+|+++..|.++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 56999999999999998866665 67899999999999999999874 3569999999998888775 442 2
Q ss_pred cccceEEecccHHHHHHHHHHHHhhC-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceE
Q 017011 175 LPHAIQRLELAGKDLTDYLTTNLTKD-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQY 244 (379)
Q Consensus 175 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
+.......++||.++++.|.+++... +.+..... -+..+|..|+.+... ...+.
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i 286 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI 286 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence 34444567999999999998887421 11111110 123345555544221 11111
Q ss_pred E---ccCCceeccCccccc---ccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHH
Q 017011 245 E---LPDGQVITIGAAQFK---GPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLA 318 (379)
Q Consensus 245 ~---lp~~~~i~i~~~~~~---~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~ 318 (379)
+ |-+|..+.....|.+ .+.-||.. ..+.+..++...- +-+...+.||||||++++|.++.-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence 1 223333333333333 23334432 3344444554332 33455678999999999998777776
Q ss_pred HHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 319 KELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 319 ~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
+-+.. -+...+-+|+.++..||++.|.+.
T Consensus 356 d~f~~-------k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 356 DFFNG-------KELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred HHhcc-------cccccCCCHHHHHHhhHHHHhhhc
Confidence 65532 123355688999999999999875
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.32 E-value=1.5e-10 Score=109.82 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=107.1
Q ss_pred ChhhHHHHHHHhhccCCCCeEeeecchhhhhhcc----------C-Cc-eEEEEeCCCCcEEEEEeecCeecccceEEec
Q 017011 116 PKINREKMVEIMFEGFEIPATYVAIQAVLSLYAS----------G-RT-TGIVMDSGEGVTHVVPIYEGYALPHAIQRLE 183 (379)
Q Consensus 116 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~ 183 (379)
+....+.+.++ |+..|+.-..+..+++|.+-+. . .. +.++||+|+++|+++.+.+|.++ ..+.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 56667777666 4788888888888887764332 1 12 48999999999999999999999 788999
Q ss_pred ccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccccccc
Q 017011 184 LAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPE 263 (379)
Q Consensus 184 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E 263 (379)
+||.++++.+.+.+ ..+.+.++.+|.+..+... ...+. .+
T Consensus 218 ~G~~~i~~~i~~~~---------~~~~~~Ae~~k~~~~~~~~-~~~~~------------------------------~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAY---------GLNPEEAGEAKQQGGLPLL-YDPEV------------------------------LR 257 (348)
T ss_pred chHHHHHHHHHHHc---------CCCHHHHHHHHhcCCCCCc-hhHHH------------------------------HH
Confidence 99999999998766 2355678888876543211 00000 00
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhh
Q 017011 264 VLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCN 323 (379)
Q Consensus 264 ~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~ 323 (379)
..+ ..+..-|.++++-..........+.|+||||+++++||.+.|+++|.-
T Consensus 258 ~~~---------~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~ 308 (348)
T TIGR01175 258 RFK---------GELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGL 308 (348)
T ss_pred HHH---------HHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCC
Confidence 000 014444555554332222223467899999999999999999999963
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.28 E-value=1.4e-10 Score=109.45 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHhhhccCCCCC-----------------CcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhh
Q 017011 82 DWDAMERLWEHIFDKELRVTIEE-----------------HPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVL 144 (379)
Q Consensus 82 ~~~~~~~~l~~~~~~~l~~~~~~-----------------~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 144 (379)
+.+.++..+++=..+++..+.++ ..|+++. .++...+.+++. |+.+|.+-..+--++.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~-~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVEL-FEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHH-HHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHH-HHHcCCceEEEeehHHH
Confidence 55677777777666666554332 2344443 245555665555 47778776655544444
Q ss_pred --hhhcc---------CCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHH
Q 017011 145 --SLYAS---------GRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIV 213 (379)
Q Consensus 145 --a~~~~---------g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~ 213 (379)
-++.. ...+-++||+|+..|+++.+.+|.++ ..+.+++||+++++.+.+.+ ..+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence 23322 11356899999999999999999999 88889999999999999887 4466778
Q ss_pred HHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHH
Q 017011 214 RDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDV 293 (379)
Q Consensus 214 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~ 293 (379)
+.+|.+... ..+...+. -+.++. .|..-|.++++-.....
T Consensus 231 e~~k~~~~l-~~~~~~~~------------------------------l~~~~~---------~l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQDA------------------------------LRPFLE---------ELAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHHH------------------------------HHHHHH---------HHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHHH------------------------------HHHHHH---------HHHHHHHHHHHHHHhcC
Confidence 888776432 11111100 000010 25555666665444444
Q ss_pred HHhhhcCeEeecCCCCCCCHHHHHHHHHhh
Q 017011 294 RREMYGNVVLSGGTSLIPGLPDRLAKELCN 323 (379)
Q Consensus 294 r~~l~~nIil~GG~s~i~G~~~rl~~eL~~ 323 (379)
...-.+.|+||||+|+++|+.+.|.++|.-
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHHCC
Confidence 455678899999999999999999999953
No 48
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.3e-11 Score=117.57 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=120.3
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc--c-------------------
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK--R------------------- 66 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~--~------------------- 66 (379)
..-++-||+||.++|+|...-..|.-+.-|.-.|.+.... ......+-++|++|..+ +
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~-vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSI-VAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcce-EEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 3456889999999999999776676443344444444332 22223345677666543 0
Q ss_pred CC---eeeeccc-------cCCc----ccC--HHHHHHHHHHHHhhhccC-----CCCCCcEEEEcCCCCChhhHHHHHH
Q 017011 67 GV---LRLSHPV-------NRGM----VRD--WDAMERLWEHIFDKELRV-----TIEEHPVLLTEPPLNPKINREKMVE 125 (379)
Q Consensus 67 ~~---~~~~~p~-------~~g~----i~~--~~~~~~~l~~~~~~~l~~-----~~~~~~vvl~~~~~~~~~~~~~l~~ 125 (379)
+. ++-++|. .++- +.| --.+|+++..++...-.. ...-..+++++|+++.+.+|+.+++
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 00 1111221 1111 112 112455555444221111 1124679999999999999999998
Q ss_pred HhhccCCCCeEeeecchhhhhhccCC----------ceEEEEeCCCCcEEEEEee--------cCeeccc-----ceEEe
Q 017011 126 IMFEGFEIPATYVAIQAVLSLYASGR----------TTGIVMDSGEGVTHVVPIY--------EGYALPH-----AIQRL 182 (379)
Q Consensus 126 ~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~v~pv~--------dG~~~~~-----~~~~~ 182 (379)
.. +-+|.+.++++++..++|+.+|. ..-++.|+|+++|+.+.|. .|...+. .--..
T Consensus 180 Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 180 AA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 87 67899999999999999998874 3679999999999999874 2201100 01125
Q ss_pred cccHHHHHHHHHHHHhh
Q 017011 183 ELAGKDLTDYLTTNLTK 199 (379)
Q Consensus 183 ~~GG~~i~~~l~~~l~~ 199 (379)
.+||..++..|+.+|..
T Consensus 259 tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 78999999999999864
No 49
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.24 E-value=3.4e-10 Score=106.63 Aligned_cols=289 Identities=17% Similarity=0.160 Sum_probs=152.1
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCC-CCcc------------ccCCCcc---eeecchhhhccCCeeeec
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRN-KNSM------------IGIGQKD---MYFGDEAQAKRGVLRLSH 73 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~-~~~~------------~~~~~~~---~~vg~~a~~~~~~~~~~~ 73 (379)
.++-||+|-.++|.-..... ..+|+.++.... ...+ ...+... +++|.++........-.+
T Consensus 3 ~v~~iDiG~g~tK~~~~~~~---~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~~ 79 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDEK---FVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDTY 79 (344)
T ss_pred eEEEEeccCCeEEEEecCCC---EEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCcc
Confidence 57889999999998665211 234555443211 1011 1112233 777776533211000001
Q ss_pred cccCCcccCHHHHHHHHHHHHhhhccCC--CCCCcEEE--EcCCCCChhh-HHHHHHHhhcc-----------CCCCeEe
Q 017011 74 PVNRGMVRDWDAMERLWEHIFDKELRVT--IEEHPVLL--TEPPLNPKIN-REKMVEIMFEG-----------FEIPATY 137 (379)
Q Consensus 74 p~~~g~i~~~~~~~~~l~~~~~~~l~~~--~~~~~vvl--~~~~~~~~~~-~~~l~~~lfe~-----------~~~~~v~ 137 (379)
-... .. .-+.+..++..++...+... .+...++| -.|...-... ++.+.+.+-.. ..+..|.
T Consensus 80 ~~~~-~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~ 157 (344)
T PRK13917 80 STND-RY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVK 157 (344)
T ss_pred cccc-cc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEE
Confidence 1111 11 23456667666653222221 12233444 4444332222 24554443111 3466788
Q ss_pred eecchhhhhhccCC-------------ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcc
Q 017011 138 VAIQAVLSLYASGR-------------TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIF 204 (379)
Q Consensus 138 ~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~ 204 (379)
++++|+.|++.... ...+|||+|+.+|+++.+.++.+....+...+.|..++.+.+.+.+..+....
T Consensus 158 V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~~~~ 237 (344)
T PRK13917 158 VVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKKEEGA 237 (344)
T ss_pred EecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhhCCCC
Confidence 99999988764421 25699999999999999999999887777899999999999999995433222
Q ss_pred cchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHH
Q 017011 205 TTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVR 284 (379)
Q Consensus 205 ~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~ 284 (379)
..+.+.++++.++- .+.+..+..+.+.++.....+ .+.+.+.+
T Consensus 238 --~~~~~~ie~~l~~g----------------------~i~~~~~~~id~~~~~~~~~~-------------~~~~~i~~ 280 (344)
T PRK13917 238 --SITPYMLEKGLEYG----------------------ACKLNQKTVIDFKDEFYKEQD-------------SVIDEVMS 280 (344)
T ss_pred --CCCHHHHHHHHHcC----------------------cEEeCCCceEehHHHHHHHHH-------------HHHHHHHH
Confidence 12223344332210 011111122222221111111 12222222
Q ss_pred HHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 285 AIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 285 ~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.++..=.+ ..-+++|+|+||+|.+ +.+.|++ .++ ++ ...++|+++...|...++.+
T Consensus 281 ~i~~~~~~--~~~~d~IiL~GGGA~l--l~~~lk~----~f~---~~--~~~~~p~~ANa~G~~~~g~~ 336 (344)
T PRK13917 281 GFEIAVGN--INSFDRVIVTGGGANI--FFDSLSH----WYS---DV--EKADESQFANVRGYYKYGEL 336 (344)
T ss_pred HHHHHhcc--cCCCCEEEEECCcHHH--HHHHHHH----HcC---Ce--EEcCChHHHHHHHHHHHHHH
Confidence 22111001 1235679999999977 4444444 444 23 34578999999999988874
No 50
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.23 E-value=1.1e-10 Score=109.27 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=114.2
Q ss_pred EeCCCceEEEEecCC-CCC-CCCCCceeEecCCCC-c-----------cccCCCcceeecchhhhccCCeeeeccccCCc
Q 017011 14 CDSGSGSVKTGFAGD-DAP-CVVFPSLIGQPRNKN-S-----------MIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGM 79 (379)
Q Consensus 14 iD~Gs~~~k~G~~ge-~~P-~~~~p~~~~~~~~~~-~-----------~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~ 79 (379)
||+|-.++|+-+.+. ..+ ...+|+.++...... . ....+.+.++||+.+....+. ...+.+....
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 799999999876532 232 246777764321111 0 011244567888776432211 1111222222
Q ss_pred ccCHHHHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhcc--------CCCCeEeeecchhhhhhcc--
Q 017011 80 VRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEG--------FEIPATYVAIQAVLSLYAS-- 149 (379)
Q Consensus 80 i~~~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 149 (379)
.. -+....++.+++. ..... ....+++-.|...-..+++.+.+.+-.. ..+..|.++|+|+.|.+..
T Consensus 81 ~~-~~~~~~L~~~Al~-~~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TE-TPEYMALLRGALA-LSKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cC-CHHHHHHHHHHHH-HhcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 22 2355666666663 22221 2223565566655455677776665322 4677899999999887643
Q ss_pred -------CCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhC
Q 017011 150 -------GRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKD 200 (379)
Q Consensus 150 -------g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 200 (379)
.....+|||+|+.+|+++.+.++.+..+.+.+.+.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234679999999999999888888887777788999999999999999654
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.14 E-value=4.8e-11 Score=99.19 Aligned_cols=204 Identities=21% Similarity=0.256 Sum_probs=127.7
Q ss_pred cccCCcccCHHH----HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhcc
Q 017011 74 PVNRGMVRDWDA----MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYAS 149 (379)
Q Consensus 74 p~~~g~i~~~~~----~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~ 149 (379)
-+++|.+.|+-. +.++.+.+ .++|++... ..--..||-......+.... ++|..|......+.+|.++++-.
T Consensus 62 vVRDGiVvdf~eaveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iN-ViESAGlevl~vlDEPTAaa~vL 137 (277)
T COG4820 62 VVRDGIVVDFFEAVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISIN-VIESAGLEVLHVLDEPTAAADVL 137 (277)
T ss_pred hhccceEEehhhHHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEE-eecccCceeeeecCCchhHHHHh
Confidence 356666666533 33333333 356665421 11122233332222222222 35889999999999999999999
Q ss_pred CCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHH
Q 017011 150 GRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQK 229 (379)
Q Consensus 150 g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~ 229 (379)
+.++|-|||+|+++|-|+.+-+|.++ .+...+.||.+++-.|.-. + ..+.+.+|++|+..-- .+
T Consensus 138 ~l~dg~VVDiGGGTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~---y------gi~~EeAE~~Kr~~k~----~~- 201 (277)
T COG4820 138 QLDDGGVVDIGGGTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGN---Y------GISLEEAEQYKRGHKK----GE- 201 (277)
T ss_pred ccCCCcEEEeCCCcceeEEEEcCcEE--EeccCCCCceeEEEEEecc---c------CcCHhHHHHhhhcccc----ch-
Confidence 99999999999999999999999999 5567899998766543211 1 2355678888875410 00
Q ss_pred HHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCC
Q 017011 230 ELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSL 309 (379)
Q Consensus 230 ~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~ 309 (379)
| -|......++ .+.+++.+-|..-+. ..+.|+||.+.
T Consensus 202 E---------------------------if~~v~PV~e---------KMAeIv~~hie~~~i-------~dl~lvGGac~ 238 (277)
T COG4820 202 E---------------------------IFPVVKPVYE---------KMAEIVARHIEGQGI-------TDLWLVGGACM 238 (277)
T ss_pred h---------------------------cccchhHHHH---------HHHHHHHHHhccCCC-------cceEEeccccc
Confidence 0 0000001111 255666666655543 36899999999
Q ss_pred CCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhh
Q 017011 310 IPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGS 348 (379)
Q Consensus 310 i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gas 348 (379)
.||+++-++++| +..|+.+..|.+..=+|-+
T Consensus 239 ~~g~e~~Fe~~l--------~l~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 239 QPGVEELFEKQL--------ALQVHLPQHPLYMTPLGIA 269 (277)
T ss_pred CccHHHHHHHHh--------ccccccCCCcceechhhhh
Confidence 999999999999 3355555556655545533
No 52
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.1e-09 Score=98.34 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=136.7
Q ss_pred CcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCc-----eEEEEeCCCCcEEEE--EeecCeec-c
Q 017011 105 HPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRT-----TGIVMDSGEGVTHVV--PIYEGYAL-P 176 (379)
Q Consensus 105 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~--pv~dG~~~-~ 176 (379)
...+++.|.+++..+|....+. ..-++...+..+++|.+|++++|.. .-.|.|+|+++..|. -+.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRqaTkda-g~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDA-GQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhh-hhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 4589999999999999885544 4778889999999999999999864 567999999997665 45677553 3
Q ss_pred cceEEecccHHHHHHHHHHHHhh---CCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc----CC
Q 017011 177 HAIQRLELAGKDLTDYLTTNLTK---DGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP----DG 249 (379)
Q Consensus 177 ~~~~~~~~GG~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~~ 249 (379)
.+-.....||.+++..+..++-. ++..+....+....+.+++..- ..+...++.......+| |.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaE---------kaKielSs~~~tei~lp~iTada 310 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAE---------KAKIELSSRQQTEINLPFITADA 310 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHH---------hhhhhhhhcccceeccceeeccC
Confidence 33346789999999999888742 1222222334344444433211 00111111111222222 21
Q ss_pred ---ceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHH-----hhhcCeEeecCCCCCCCHHHHHHHHH
Q 017011 250 ---QVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRR-----EMYGNVVLSGGTSLIPGLPDRLAKEL 321 (379)
Q Consensus 250 ---~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~-----~l~~nIil~GG~s~i~G~~~rl~~eL 321 (379)
..+.+...|-...|. ++.+|.+.|.-|..++|. +-++.|+|+||.+++|-..+.+++-+
T Consensus 311 ~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f 377 (640)
T KOG0102|consen 311 SGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF 377 (640)
T ss_pred CCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh
Confidence 333444445444444 677788888777666664 45567999999999996666665444
Q ss_pred hhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 322 CNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 322 ~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.. -|. ...+|+-++-.||++.+..
T Consensus 378 gk-~p~-------~~vnPdeava~GAaiqggv 401 (640)
T KOG0102|consen 378 GK-GPS-------KGVNPDEAVAGGAAIQGGV 401 (640)
T ss_pred CC-CCC-------CCcCCcchhccchhhccch
Confidence 22 221 2246777777777776553
No 53
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-08 Score=99.48 Aligned_cols=235 Identities=15% Similarity=0.165 Sum_probs=140.9
Q ss_pred CCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC------------ceEEEEeCCCCcEEEEEee
Q 017011 103 EEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR------------TTGIVMDSGEGVTHVVPIY 170 (379)
Q Consensus 103 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~pv~ 170 (379)
.-..++|..|.+++..+|+.+++.+ ...|++.+.++++-.|+++++|. .+-+.||+||+.++++...
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 3467999999999999999999987 77899999999999999999883 3578899999998877554
Q ss_pred --cCee-cccceEEecccHHHHHHHHHHHHhhC---CCccc--chh-----HHHHHHHHHHHcccCccCHHHHHHhcccC
Q 017011 171 --EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD---GYIFT--TSA-----EREIVRDIKERLSYVAMDFQKELAMSKES 237 (379)
Q Consensus 171 --dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~---~~~~~--~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 237 (379)
.|.. +..+.....+||+++++.|.+++... .+.+. +.. -...++++|+.+..-. +..-.++.+..
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~-~~plNIEcfM~- 292 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANT-ELPLNIECFMN- 292 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCc-CCCcchhheee-
Confidence 4422 23333445899999999999998653 22221 111 1234677776654320 00000100000
Q ss_pred CCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHH---------HhhhcCeEeecCCC
Q 017011 238 SQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVR---------REMYGNVVLSGGTS 308 (379)
Q Consensus 238 ~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r---------~~l~~nIil~GG~s 308 (379)
.. .-.-.+..+. .-+++...+.++..-+. ..-++-|=++||+|
T Consensus 293 -------d~--dvs~~i~ReE-------------------fEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~s 344 (727)
T KOG0103|consen 293 -------DK--DVSSKIKREE-------------------FEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLS 344 (727)
T ss_pred -------cc--hhhhhccHHH-------------------HHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcc
Confidence 00 0000111111 11222222222221111 12234688999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc--ccccccccHHHHhhcCCccccc
Q 017011 309 LIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS--TFQQMWITKEDYMESGPSVVHM 376 (379)
Q Consensus 309 ~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~--~~~~~~itr~ey~e~G~~~~~~ 376 (379)
+||-+.+.|.+-+..-+. ...+.+.++-+||++-...- .|+-.|.+.+|-..+-.++.|.
T Consensus 345 ripaike~Is~~Fgke~s--------~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pysIs~~w~ 406 (727)
T KOG0103|consen 345 RIPAIKEMISDFFGKELS--------RTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWV 406 (727)
T ss_pred cchHHHHHHHHHhCCccc--------ccccHHHHHHHhHHHHHHhcCccccceecceecccceeEEEEec
Confidence 999888888765543321 12345678888888866643 4666666666655554444433
No 54
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=8.1e-08 Score=86.43 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=96.2
Q ss_pred HhhccCCCCeEeeecchhhhh--hc-----cCC-c---eEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHH
Q 017011 126 IMFEGFEIPATYVAIQAVLSL--YA-----SGR-T---TGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLT 194 (379)
Q Consensus 126 ~lfe~~~~~~v~~~~~~~~a~--~~-----~g~-~---~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~ 194 (379)
-.|+..|..-..+--+..+.. |. .+. . ..+|+|||+..|++..+.+|+++ ..+..++||++++..+.
T Consensus 156 ~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~i~ 233 (354)
T COG4972 156 DAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQEIQ 233 (354)
T ss_pred HHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHHHHH
Confidence 345666665554444444332 21 111 2 24699999999999999999999 77899999999999999
Q ss_pred HHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCC
Q 017011 195 TNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLE 274 (379)
Q Consensus 195 ~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~ 274 (379)
+.+ ..+...++++|....... ++..+.-. + |
T Consensus 234 r~~---------~L~~~~a~~~k~~~~~P~-~y~~~vl~------------------------~-------f-------- 264 (354)
T COG4972 234 RAY---------SLTEEKAEEIKRGGTLPT-DYGSEVLR------------------------P-------F-------- 264 (354)
T ss_pred HHh---------CCChhHhHHHHhCCCCCC-chhHHHHH------------------------H-------H--------
Confidence 887 345566777777654322 33332210 0 0
Q ss_pred CCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHh
Q 017011 275 TEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELC 322 (379)
Q Consensus 275 ~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~ 322 (379)
...|..-|.++|+-+-..-.-.-+..|+|.||++.+.|+.+.+++.|+
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 012555566666554221122345679999999999999999999996
No 55
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.68 E-value=2.5e-07 Score=86.46 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=65.7
Q ss_pred HHHHHHhhhccCCCCCCcEEEEcCCC--CC---hhhHHHHHH---Hhh--------ccCCCCeEeeecchhhhhhcc---
Q 017011 89 LWEHIFDKELRVTIEEHPVLLTEPPL--NP---KINREKMVE---IMF--------EGFEIPATYVAIQAVLSLYAS--- 149 (379)
Q Consensus 89 ~l~~~~~~~l~~~~~~~~vvl~~~~~--~~---~~~~~~l~~---~lf--------e~~~~~~v~~~~~~~~a~~~~--- 149 (379)
...|.+. .-+..+.+-.+++..|.- .. +..++.+.+ .+. +.+.+..|.+.|++++|.|..
T Consensus 81 av~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 3455552 335556666677787721 11 122233322 121 124477899999999998764
Q ss_pred --CCceEEEEeCCCCcEEEEEeecCeecc-cceEEecccHHHHHHHHHHHHhh
Q 017011 150 --GRTTGIVMDSGEGVTHVVPIYEGYALP-HAIQRLELAGKDLTDYLTTNLTK 199 (379)
Q Consensus 150 --g~~~~lVVDiG~~~t~v~pv~dG~~~~-~~~~~~~~GG~~i~~~l~~~l~~ 199 (379)
.....+|||+|+.+++++.|.++.+.. .+....+.|-..+.+.+.+.|..
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 235789999999999999888765543 33345678999999999998865
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.53 E-value=4.3e-06 Score=75.36 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=82.6
Q ss_pred eEEEEeCCCCcEEEEEeecCeecccce-EEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHH
Q 017011 153 TGIVMDSGEGVTHVVPIYEGYALPHAI-QRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKEL 231 (379)
Q Consensus 153 ~~lVVDiG~~~t~v~pv~dG~~~~~~~-~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~ 231 (379)
.-.|||+|++.+.+..+-+|.+..-.. ..+.-|+..+.+.+.+.|. .+.+.+++++.+.-... ..
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---------~~~~e~~~~~~~~~~~~-~~---- 157 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG---------VSVEELGSLAEKADRKA-KI---- 157 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC---------CCHHHHHHHHhcCCCCC-Cc----
Confidence 345999999999999999887652112 2356777888888887772 23344555554421100 00
Q ss_pred HhcccCCCCcceEEccCCceecc---CcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-CeEeecCC
Q 017011 232 AMSKESSQLDKQYELPDGQVITI---GAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYG-NVVLSGGT 307 (379)
Q Consensus 232 ~~~~~~~~~~~~~~lp~~~~i~i---~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~-nIil~GG~ 307 (379)
+....-|. ....+.. +..+......++ ..+...+.+.+...+ .+ .|+++||.
T Consensus 158 ------~~~c~vf~--~s~vi~~l~~g~~~~di~~~~~---------~~va~~i~~~~~~~~-------~~~~Vvl~GGv 213 (248)
T TIGR00241 158 ------SSMCTVFA--ESELISLLAAGVKKEDILAGVY---------ESIAERVAEMLQRLK-------IEAPIVFTGGV 213 (248)
T ss_pred ------CCEeEEEe--chhHHHHHHCCCCHHHHHHHHH---------HHHHHHHHHHHhhcC-------CCCCEEEECcc
Confidence 00000000 0000000 000000000000 012233333332222 33 79999999
Q ss_pred CCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhh
Q 017011 308 SLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSIL 350 (379)
Q Consensus 308 s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~ 350 (379)
++.+++.+++.+.|. ..+..++++.+..-+||+++
T Consensus 214 a~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 214 SKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 999999999999883 34556677888889998864
No 57
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.47 E-value=1.6e-05 Score=75.98 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=94.1
Q ss_pred CCcEEEeCCCceEEEEecCC----CCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHH
Q 017011 9 FRSIVCDSGSGSVKTGFAGD----DAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWD 84 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge----~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~ 84 (379)
-..|-||+||+|+..=|+.- ..+....|-+.-- +++++. ++. =.-.|+......|-+
T Consensus 6 i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~-----------dkev~y-------rS~-i~fTPl~~~~~ID~~ 66 (475)
T PRK10719 6 LLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEII-----------DKEIIY-------RSP-IYFTPLLKQGEIDEA 66 (475)
T ss_pred EEEEEEeccCceEEEEEEEEEEecccccccCceEEEe-----------eeEEEE-------ecC-ceecCCCCCccccHH
Confidence 45689999999999988832 1222222211100 011111 111 112577777777899
Q ss_pred HHHHHHHHHHhhhccCCCC--CCcEEEEcCCCCChhhHHHHHHHhhc----------cCCCCeEeeecchhhhhhccC--
Q 017011 85 AMERLWEHIFDKELRVTIE--EHPVLLTEPPLNPKINREKMVEIMFE----------GFEIPATYVAIQAVLSLYASG-- 150 (379)
Q Consensus 85 ~~~~~l~~~~~~~l~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe----------~~~~~~v~~~~~~~~a~~~~g-- 150 (379)
.++++.+.=+ +.-++.+. +..+.++........+.+++++.+-. .+++.++ +. +++++.+.-
T Consensus 67 ~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i--va-~~ASg~avLse 142 (475)
T PRK10719 67 AIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI--IA-GKGAGAQTLSE 142 (475)
T ss_pred HHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh--hh-HHHhhHHHhhh
Confidence 9999999887 66666655 34455554444444444444443210 0111121 11 333332221
Q ss_pred --CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHH
Q 017011 151 --RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDY 192 (379)
Q Consensus 151 --~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~ 192 (379)
....++||||+++|+++.+.+|.++ +...+++||++++..
T Consensus 143 Eke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 143 ERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred hccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 2478999999999999999999999 777899999977664
No 58
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.16 E-value=1.9e-05 Score=74.46 Aligned_cols=48 Identities=40% Similarity=0.499 Sum_probs=40.9
Q ss_pred hhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 297 MYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 297 l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
+-+.|+++||.++.+|+.+.|++.|. .+++.+++|++...+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 34459999999999999999999984 3566688999999999999985
No 59
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.08 E-value=5.7e-05 Score=68.53 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=40.0
Q ss_pred hhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEE-CCCCCccceeehhhhhhc
Q 017011 296 EMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVV-APPQRLHSVWIGGSILAS 352 (379)
Q Consensus 296 ~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~-~~~~~~~~~w~Gasi~a~ 352 (379)
.+-..|+++||.++-+|+.+.|++.|.. ++. .+++|++....||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 3455799999999999999999999943 333 356789999999999984
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.92 E-value=0.00019 Score=64.18 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=40.5
Q ss_pred cCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 299 GNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 299 ~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.+|+++||.++-+++.+.|+++|... ...+.+..+++|++...+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999999532 114456667789999999999875
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.87 E-value=0.00041 Score=64.18 Aligned_cols=46 Identities=30% Similarity=0.454 Sum_probs=41.1
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
-|+++||.+...++.+.+.+.| ..+|+.|++|++.-..||+++++-
T Consensus 345 ~iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 345 PIVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred CEEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence 3999999999999999999998 457888899999999999999863
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.87 E-value=0.0012 Score=63.43 Aligned_cols=155 Identities=18% Similarity=0.215 Sum_probs=95.4
Q ss_pred CcEEEeCCCceEEEEecC---CC-CCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 10 RSIVCDSGSGSVKTGFAG---DD-APCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~g---e~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
..|-||+||+||..=|+. ++ .+....|-+.- ++.+..- ++. =.-.|+.+....|-+.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViY-rS~-I~fTPl~~~~~ID~~a 64 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIY-RSP-IYFTPLLSQTEIDAEA 64 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEe-cCC-ccccCCCCCCccCHHH
Confidence 468999999999998884 21 22223332211 1111110 011 1125888777779999
Q ss_pred HHHHHHHHHhhhccCCCCC--Cc-EEEEcCCCCChhhHHHHHHHhhccCCCCeEe---eecchhhhhhccCC--------
Q 017011 86 MERLWEHIFDKELRVTIEE--HP-VLLTEPPLNPKINREKMVEIMFEGFEIPATY---VAIQAVLSLYASGR-------- 151 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~--~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~---~~~~~~~a~~~~g~-------- 151 (379)
++++++.=+ +.-++.+.+ .- |++|-- -..+++-+.+++.|-+.+|==.|. =--+++.|..++|.
T Consensus 65 l~~iv~~eY-~~Agi~p~~I~TGAVIITGE-TArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~ 142 (473)
T PF06277_consen 65 LKEIVEEEY-RKAGITPEDIDTGAVIITGE-TARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHH 142 (473)
T ss_pred HHHHHHHHH-HHcCCCHHHCccccEEEecc-hhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhC
Confidence 999999888 666777653 43 555543 334555555666665444311111 11256677777662
Q ss_pred ceEEEEeCCCCcEEEEEeecCeecccceEEecccHH
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~ 187 (379)
..-+=+|||+++|.++.+.+|.++ ...-+++||+
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGR 176 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGR 176 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccE
Confidence 234457999999999999999999 6666899997
No 63
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.87 E-value=0.0021 Score=57.10 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=108.7
Q ss_pred HHHHHHhhccCCCCeEeeecchhhhhhccCCc-----eEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHH
Q 017011 121 EKMVEIMFEGFEIPATYVAIQAVLSLYASGRT-----TGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTT 195 (379)
Q Consensus 121 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~ 195 (379)
+.+.+.+-+.++++.-.---++-+|..+.-.+ --.|+|+|+++|+.+.+-....+ ....+-=.|+.+|..+..
T Consensus 98 ~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mVTmlI~s 175 (332)
T PF08841_consen 98 QMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMVTMLINS 175 (332)
T ss_dssp HHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhhHHHHHH
Confidence 45666666778999888888998888876443 45688999999998877644444 333345567888888877
Q ss_pred HHhhCCCcccchhHHHHHHHHHHHc-ccCccCHH--HH---H---HhcccCCCCcceEEccCCceeccCc---------c
Q 017011 196 NLTKDGYIFTTSAEREIVRDIKERL-SYVAMDFQ--KE---L---AMSKESSQLDKQYELPDGQVITIGA---------A 257 (379)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~ik~~~-~~~~~~~~--~~---~---~~~~~~~~~~~~~~lp~~~~i~i~~---------~ 257 (379)
-|- ..+++++|++|+.. +.+..-+. +| . ...-.+.-..+...+.++..++++. .
T Consensus 176 ELG--------l~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEkir~v 247 (332)
T PF08841_consen 176 ELG--------LEDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKIRSV 247 (332)
T ss_dssp HCT---------S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHHHHH
T ss_pred hhC--------CCCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHHHHH
Confidence 762 23678899999753 11111000 00 0 0000011111222222333333321 0
Q ss_pred cccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCC
Q 017011 258 QFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPP 337 (379)
Q Consensus 258 ~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~ 337 (379)
|-.+-+-.| ..+ +.+++.++.+.-.-..+..++|+||++.=--+.+-+.+.|+++--.--.-+|....
T Consensus 248 Rr~AK~kVF-----------VtN-a~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~e 315 (332)
T PF08841_consen 248 RREAKEKVF-----------VTN-ALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVE 315 (332)
T ss_dssp HHHHHHHHH-----------HHH-HHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTS
T ss_pred HHHhhhhhh-----------HHH-HHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccccc
Confidence 112222222 222 23566666443222345579999999997778888888998763110011222234
Q ss_pred CCccceeehh
Q 017011 338 QRLHSVWIGG 347 (379)
Q Consensus 338 ~~~~~~w~Ga 347 (379)
-|.+++..|-
T Consensus 316 GPRNAVATGL 325 (332)
T PF08841_consen 316 GPRNAVATGL 325 (332)
T ss_dssp TTSTHHHHHH
T ss_pred CchHHHHHHH
Confidence 5667766663
No 64
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.73 E-value=0.0056 Score=57.58 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=42.7
Q ss_pred hhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 297 MYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 297 l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
+-..|+++||.++-+|+.+.|++.|....+ ..+|+.+++|++...+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 446899999999999999999999965432 2356668899999999999875
No 65
>PRK13317 pantothenate kinase; Provisional
Probab=96.40 E-value=0.035 Score=50.66 Aligned_cols=52 Identities=19% Similarity=0.057 Sum_probs=42.0
Q ss_pred hhhcCeEeec-CCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 296 EMYGNVVLSG-GTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 296 ~l~~nIil~G-G~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.-.++|+++| |.++.|++.++|.+.++.. ..++.-+++|++...+||++++.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence 3447999999 7999999999999877531 34566678899999999998875
No 66
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.26 E-value=0.013 Score=53.56 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=35.0
Q ss_pred eEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 301 VVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 301 Iil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
|+++||..+-+.+.+.|++.|++.++.. .+..+..|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999988777777766666655432 23344567899999999886
No 67
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.16 E-value=0.055 Score=49.20 Aligned_cols=68 Identities=13% Similarity=-0.041 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHhCCH-HHHHhhhcCeEeecC-CCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhh
Q 017011 277 GAHEILVRAIMRSDM-DVRREMYGNVVLSGG-TSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSI 349 (379)
Q Consensus 277 ~l~~~i~~~i~~~~~-~~r~~l~~nIil~GG-~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi 349 (379)
+|..+|...|..+.. -.+..-.++|+++|| ....|.+.+++...+.-. ..++.-+.+..+...+||++
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~-----~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFW-----SKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhc-----CceEEEECCcchHHHhhhcc
Confidence 455555555533321 123445788999999 678999999998877532 24555556667777777764
No 68
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.95 E-value=0.06 Score=53.56 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=55.3
Q ss_pred EEEEcCCCCChhhHHHHHHHhhccCCCC--eEeeecchhhhhhcc-----CCceEEEEeCCCCcEEEEEeecCeecccce
Q 017011 107 VLLTEPPLNPKINREKMVEIMFEGFEIP--ATYVAIQAVLSLYAS-----GRTTGIVMDSGEGVTHVVPIYEGYALPHAI 179 (379)
Q Consensus 107 vvl~~~~~~~~~~~~~l~~~lfe~~~~~--~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~ 179 (379)
.++.....-...++..+++.+.+..|++ .+.=-.++.+..++. ...+++|||||+++|.++.+-+|.+. ..
T Consensus 80 ~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 80 RVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 3444444455667777787777776665 222222333332221 12358999999999999999888877 66
Q ss_pred EEecccHHHHHHHH
Q 017011 180 QRLELAGKDLTDYL 193 (379)
Q Consensus 180 ~~~~~GG~~i~~~l 193 (379)
.+.|+|.-.+++.+
T Consensus 158 ~Sl~lG~vrl~e~f 171 (496)
T PRK11031 158 FSLSMGCVTWLERY 171 (496)
T ss_pred eEEeccchHHHHHh
Confidence 78999987766543
No 69
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.88 E-value=0.057 Score=50.06 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=54.9
Q ss_pred EEEcCCCCChhhHHHHHHHhhccCCCCeEeeec---chhhhhhc----cCCceEEEEeCCCCcEEEEEeecCeecccceE
Q 017011 108 LLTEPPLNPKINREKMVEIMFEGFEIPATYVAI---QAVLSLYA----SGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQ 180 (379)
Q Consensus 108 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~----~g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~ 180 (379)
++....+....++..+++.+.+..|++ +.+++ ++.+...+ ....+++++|+|+++|.++.+.+|.+. ...
T Consensus 75 ~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~ 151 (300)
T TIGR03706 75 AVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV 151 (300)
T ss_pred EEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence 333344445567777887777766654 23443 33322222 122457999999999999998888877 667
Q ss_pred EecccHHHHHHHH
Q 017011 181 RLELAGKDLTDYL 193 (379)
Q Consensus 181 ~~~~GG~~i~~~l 193 (379)
.+|+|.-.+++.+
T Consensus 152 Sl~lG~vrl~e~f 164 (300)
T TIGR03706 152 SLPLGCVRLTEQF 164 (300)
T ss_pred EEccceEEhHHhh
Confidence 8999988777664
No 70
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.029 Score=55.24 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCCChhhHHHHHHHhhccCCCCe--Eeeecchhhhhhcc----C-CceEEEEeCCCCcEEEEEeecCeecccceEEeccc
Q 017011 113 PLNPKINREKMVEIMFEGFEIPA--TYVAIQAVLSLYAS----G-RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELA 185 (379)
Q Consensus 113 ~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~G 185 (379)
.+-...+...+.+.+-+.+|++- +.=-.++-.+.++. + ...++|+|+|+++|.++-+-+..+. .....|+|
T Consensus 83 A~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G 160 (492)
T COG0248 83 ALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLG 160 (492)
T ss_pred HHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecc
Confidence 33344555556666666666652 22223444444332 3 5689999999999999988766666 55677888
Q ss_pred HHHHHHHH
Q 017011 186 GKDLTDYL 193 (379)
Q Consensus 186 G~~i~~~l 193 (379)
.-.+++.+
T Consensus 161 ~v~lt~~~ 168 (492)
T COG0248 161 CVRLTERF 168 (492)
T ss_pred eEEeehhh
Confidence 65555443
No 71
>PRK10854 exopolyphosphatase; Provisional
Probab=95.29 E-value=0.09 Score=52.59 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=52.8
Q ss_pred EEEEcCCCCChhhHHHHHHHhhccCCCCe--EeeecchhhhhhccC-----CceEEEEeCCCCcEEEEEeecCeecccce
Q 017011 107 VLLTEPPLNPKINREKMVEIMFEGFEIPA--TYVAIQAVLSLYASG-----RTTGIVMDSGEGVTHVVPIYEGYALPHAI 179 (379)
Q Consensus 107 vvl~~~~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~dG~~~~~~~ 179 (379)
.++.....-...++..+++.+.+..|++- +.=-.++.+..++.- ..+++|||||+++|.++.+-+|.+. ..
T Consensus 85 ~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~ 162 (513)
T PRK10854 85 CIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LV 162 (513)
T ss_pred EEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--Ee
Confidence 33444444456677778877777767652 222223333222211 2468999999999999999888766 44
Q ss_pred EEecccHHHHHHH
Q 017011 180 QRLELAGKDLTDY 192 (379)
Q Consensus 180 ~~~~~GG~~i~~~ 192 (379)
...++|.-.+++.
T Consensus 163 ~S~~lG~vrl~e~ 175 (513)
T PRK10854 163 ESRRMGCVSFAQL 175 (513)
T ss_pred EEEecceeeHHhh
Confidence 5568887666653
No 72
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.14 E-value=0.13 Score=40.70 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=41.6
Q ss_pred EEEeCCCCcEEEEEeecCeecccceEEeccc--------HHHHH--HHHHHHHhhCCCcccchhHHHHHHHH-HHHccc
Q 017011 155 IVMDSGEGVTHVVPIYEGYALPHAIQRLELA--------GKDLT--DYLTTNLTKDGYIFTTSAEREIVRDI-KERLSY 222 (379)
Q Consensus 155 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~ 222 (379)
++||+|+++|.++...++... ....+++| |..++ +.+.+.+. ...+.+|++ |.++..
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~---------~a~~~AE~~~k~~i~~ 69 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIK---------IAIEEAERLAKCEIGS 69 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHH---------HHHHHHHHHhCCeeeE
Confidence 689999999999999888777 56778999 99999 88888883 345668887 776654
No 73
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=95.04 E-value=0.19 Score=46.59 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=25.2
Q ss_pred cCCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 149 SGRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 149 ~g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
....+++.+|||+.+|+|+||.+|.+..
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeee
Confidence 3468999999999999999999999874
No 74
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.93 E-value=1.4 Score=41.03 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHHHhhccCCCCeEeeecchhhhhhc-------cCCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 123 MVEIMFEGFEIPATYVAIQAVLSLYA-------SGRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 123 l~~~lfe~~~~~~v~~~~~~~~a~~~-------~g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+.+.+-+.+++| |++.++.-+++++ .+..+.++|.+|.+. -...|.+|..+.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 444444566777 7799999888773 245789999999876 666678898774
No 75
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.17 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=21.3
Q ss_pred CceEEEEeCCCCcEEEEEeecCe
Q 017011 151 RTTGIVMDSGEGVTHVVPIYEGY 173 (379)
Q Consensus 151 ~~~~lVVDiG~~~t~v~pv~dG~ 173 (379)
..+|+.||+|+.+|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46899999999999999999996
No 76
>PRK09557 fructokinase; Reviewed
Probab=93.86 E-value=5.4 Score=36.85 Aligned_cols=67 Identities=24% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCC-CCceEEEECCCCCccceeehhhhhh
Q 017011 278 AHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLAS-PGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 278 l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~-~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
|...+...+.-++++ .|+|.||.+..+.+.+.+++.+++... ...+++|..+.....+.-.||+.+.
T Consensus 232 La~~l~~l~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 232 LAKSLAHVINILDPD-------VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 444444444444443 577877788877788888888876543 2124455555444556677877653
No 77
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.84 E-value=0.35 Score=44.42 Aligned_cols=79 Identities=23% Similarity=0.321 Sum_probs=52.3
Q ss_pred CCCCChhhHHHHHHHhhccCCCCeEeeec---chhhhhh----cc-CCceEEEEeCCCCcEEEEEeecCeecccceEEec
Q 017011 112 PPLNPKINREKMVEIMFEGFEIPATYVAI---QAVLSLY----AS-GRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLE 183 (379)
Q Consensus 112 ~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~----~~-g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~ 183 (379)
..+-...++..+++.+.+..|++-- +++ ++.+... +. ...+++|+|+|+++|.++.+.+|.+. .....|
T Consensus 65 sA~R~A~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~ 141 (285)
T PF02541_consen 65 SALREAKNSDEFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQSLP 141 (285)
T ss_dssp HHHHHSTTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEEEES
T ss_pred HHHHhCcCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--Eeeeee
Confidence 3333446667777777777776532 222 2222221 22 56799999999999999999999988 777899
Q ss_pred ccHHHHHHHH
Q 017011 184 LAGKDLTDYL 193 (379)
Q Consensus 184 ~GG~~i~~~l 193 (379)
+|.-.+++.+
T Consensus 142 lG~vrl~e~~ 151 (285)
T PF02541_consen 142 LGAVRLTERF 151 (285)
T ss_dssp --HHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9988777665
No 78
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=90.89 E-value=0.23 Score=45.76 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=21.9
Q ss_pred ccCCceEEEEeCCCCcEEEEEeecCeec
Q 017011 148 ASGRTTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 148 ~~g~~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
..+..+++++|||+.+|+|.+|.||.+.
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 4578899999999999999999999986
No 79
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=89.52 E-value=0.38 Score=43.04 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=35.1
Q ss_pred ceEEEEeCCCCcEEEEEeecCeecccceEEe----cccHHHHHHHHHHHHh
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGYALPHAIQRL----ELAGKDLTDYLTTNLT 198 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~----~~GG~~i~~~l~~~l~ 198 (379)
-+-+.|.+|...|.++.|.+|+++..--.+. ..||-.++..+...|.
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence 4668899999999999999999885443333 5666667777776664
No 80
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=87.75 E-value=5.5 Score=36.86 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=78.9
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCC----CCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCH
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPC----VVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDW 83 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~----~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~ 83 (379)
.-..|-||+||.++.+=|+--+.-. ...|-.. ++-.+... ++.. +-.|+...-..|.
T Consensus 4 ~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~-----------------ii~kdi~~-rS~i-~FTPv~~q~~id~ 64 (473)
T COG4819 4 QILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIE-----------------IIKKDISW-RSPI-FFTPVDKQGGIDE 64 (473)
T ss_pred eeeeeeeeccCceeeeeeeeeEEeecccccccceEE-----------------EEecceee-ecce-eeeeecccCCccH
Confidence 3457899999999999887432110 1111111 11111100 1111 1235555445577
Q ss_pred HHHHHHHHHHHhhhccCCCCC---CcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeee---cchhhhhhccC------C
Q 017011 84 DAMERLWEHIFDKELRVTIEE---HPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVA---IQAVLSLYASG------R 151 (379)
Q Consensus 84 ~~~~~~l~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~---~~~~~a~~~~g------~ 151 (379)
++++.+...=+ ..-++.|++ -.|+++-.....+.-|.. +..+-..+|-=.|.-. -+++.|--++| .
T Consensus 65 ~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~v-l~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seq 142 (473)
T COG4819 65 AALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPV-LMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQ 142 (473)
T ss_pred HHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHH-HHHhhhcccceEEEecCCCHHHHhccCCccccchhhh
Confidence 78887776655 444555542 346666554433333332 3333222221111111 12222222222 1
Q ss_pred ceEEE--EeCCCCcEEEEEeecCeecccceEEecccHHH
Q 017011 152 TTGIV--MDSGEGVTHVVPIYEGYALPHAIQRLELAGKD 188 (379)
Q Consensus 152 ~~~lV--VDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 188 (379)
..++| +|||+++|..+-+-.|.+. ...-+++||+.
T Consensus 143 r~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRL 179 (473)
T COG4819 143 RLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRL 179 (473)
T ss_pred hceEEEEEeccCCccceeeecccccc--cceeeecCcEE
Confidence 23444 6999999999988888777 33447888874
No 81
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=87.01 E-value=5.9 Score=37.05 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=37.1
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCC---CCccceeehhhhhhcc
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPP---QRLHSVWIGGSILASL 353 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~---~~~~~~w~Gasi~a~l 353 (379)
-|+|+|-.+.+|.|.+.+...|...++ +++.... -..-.+..|++++|+-
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhhh
Confidence 499999999999999999999988775 2332211 1123588999999873
No 82
>PRK13321 pantothenate kinase; Reviewed
Probab=86.74 E-value=3.3 Score=37.34 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.1
Q ss_pred cEEEeCCCceEEEEecCCC
Q 017011 11 SIVCDSGSGSVKTGFAGDD 29 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~ 29 (379)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3789999999999998643
No 83
>PRK00976 hypothetical protein; Provisional
Probab=83.11 E-value=15 Score=34.34 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=23.5
Q ss_pred hccCCceEEEEeCCCCcEEEEEeecCeec
Q 017011 147 YASGRTTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 147 ~~~g~~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
+-++..+.+|+|+|+ .|....|.+|.++
T Consensus 144 ~~~~~~~fi~~diss-ntv~~~V~~gkIv 171 (326)
T PRK00976 144 KLFGFENFIVSDISS-NTVTLLVKDGKIV 171 (326)
T ss_pred hhcCCCcEEEEeccc-cEEEEEEECCEEE
Confidence 346789999999999 7777788899887
No 84
>PRK13324 pantothenate kinase; Reviewed
Probab=81.59 E-value=18 Score=32.73 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.5
Q ss_pred cEEEeCCCceEEEEecCC
Q 017011 11 SIVCDSGSGSVKTGFAGD 28 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge 28 (379)
.+.||+|-+++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998753
No 85
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=80.75 E-value=46 Score=30.49 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhhccCCCCC--CcEEEEcCCCCChhhHHHHHHHhhccCC--CCeEeeecchhhhhhccC--CceEEEE
Q 017011 84 DAMERLWEHIFDKELRVTIEE--HPVLLTEPPLNPKINREKMVEIMFEGFE--IPATYVAIQAVLSLYASG--RTTGIVM 157 (379)
Q Consensus 84 ~~~~~~l~~~~~~~l~~~~~~--~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~g--~~~~lVV 157 (379)
+.+++.++.++ .+-+.+.+. +.+.+..+--..+..-+.+.+.+-..+. ...+++.+++..++++.- ...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 45677777777 455555544 6788887777666666777777655542 234677788877777654 4899999
Q ss_pred eCCCCcEEEEEeecCeec
Q 017011 158 DSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 158 DiG~~~t~v~pv~dG~~~ 175 (379)
=.|.++..-...-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999998877777787554
No 86
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=80.38 E-value=14 Score=32.06 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.0
Q ss_pred EEEeCCCceEEEEecCCC
Q 017011 12 IVCDSGSGSVKTGFAGDD 29 (379)
Q Consensus 12 vviD~Gs~~~k~G~~ge~ 29 (379)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998655
No 87
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=79.84 E-value=19 Score=32.31 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=15.7
Q ss_pred cEEEeCCCceEEEEecCC
Q 017011 11 SIVCDSGSGSVKTGFAGD 28 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge 28 (379)
-++||+|-++++.|+..+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 378999999999998874
No 88
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=3.2 Score=36.26 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=32.4
Q ss_pred cCCceEEEEeCCCCcEEEEEeecCee-cccceEEecccHHHHHHHHHHHHhh
Q 017011 149 SGRTTGIVMDSGEGVTHVVPIYEGYA-LPHAIQRLELAGKDLTDYLTTNLTK 199 (379)
Q Consensus 149 ~g~~~~lVVDiG~~~t~v~pv~dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~ 199 (379)
.|..+.+|+-+.++.|.|+...+.+- + .-.++++.=-.+...+.+.|.-
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrI--FGETlDIAvGNClDRFAR~lkl 170 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRI--FGETLDIAVGNCLDRFARVLKL 170 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeee--ecceehhhhhhhHHHHHHHhcC
Confidence 45678999999999999999987743 3 2234455533444555556643
No 89
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=78.35 E-value=21 Score=31.87 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=15.4
Q ss_pred EEEeCCCceEEEEecCCC
Q 017011 12 IVCDSGSGSVKTGFAGDD 29 (379)
Q Consensus 12 vviD~Gs~~~k~G~~ge~ 29 (379)
++||+|-+++++|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987553
No 90
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=76.42 E-value=33 Score=30.78 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=35.4
Q ss_pred ccCCCCeEeeecchhhhhhccC-------CceEEEEeCCCCcEEEEEeecCeec
Q 017011 129 EGFEIPATYVAIQAVLSLYASG-------RTTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
...+... .+.....||.++.- ....+|||+|-+.|-.+.|.+|++.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 4444555 67777777776643 4688999999999999999999886
No 91
>PRK13318 pantothenate kinase; Reviewed
Probab=75.74 E-value=51 Score=29.65 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.6
Q ss_pred cEEEeCCCceEEEEecCC
Q 017011 11 SIVCDSGSGSVKTGFAGD 28 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge 28 (379)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999998863
No 92
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.71 E-value=4.5 Score=41.76 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.3
Q ss_pred hccCCce--EEEEeCCCCcEEEEEeecCeec
Q 017011 147 YASGRTT--GIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 147 ~~~g~~~--~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
+-+|..+ ++++|+|+.+|+++-+.+|.+.
T Consensus 271 ~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 271 YLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 3346666 9999999999999999988775
No 93
>PRK13326 pantothenate kinase; Reviewed
Probab=67.99 E-value=61 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.0
Q ss_pred CcEEEeCCCceEEEEecCCC
Q 017011 10 RSIVCDSGSGSVKTGFAGDD 29 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~ 29 (379)
.-++||+|-+++|+|+..++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEEeCCCeEEEEEEECC
Confidence 35899999999999998654
No 94
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=61.63 E-value=28 Score=29.58 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.9
Q ss_pred cccCCcccCHHHHHHHHHHHHhhhc
Q 017011 74 PVNRGMVRDWDAMERLWEHIFDKEL 98 (379)
Q Consensus 74 p~~~g~i~~~~~~~~~l~~~~~~~l 98 (379)
-+++|.|.|.+.+.+.++.++ +.+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai-~~a 59 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV-EEA 59 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH-HHH
Confidence 478899999999998888888 444
No 95
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=57.80 E-value=14 Score=33.80 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=33.1
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.|+|.|+.+..+-|.+++++.++.... ...+.+..+.....++-.||+.++
T Consensus 236 ~IvlgG~~~~~~~~~~~i~~~l~~~~~-~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 236 CVVLGGSVGLAEGYLELVQAYLAQEPA-IYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred EEEEcCccccHHHHHHHHHHHHHhccc-ccCCeEEECccCCchhhhhHHHHh
Confidence 577877776666677777777776421 124455555555667788888765
No 96
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=56.85 E-value=5.9 Score=37.67 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=20.4
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhh
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCN 323 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~ 323 (379)
...|++|||++.=+-|.+||++.|..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999988854
No 97
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=54.66 E-value=76 Score=30.61 Aligned_cols=136 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred cEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHHHHHHH
Q 017011 11 SIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAMERLW 90 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~~~~~l 90 (379)
+|+||-||+-+|+-.-+=+.+....|.....-.-..+.+|.+. +...--.--+.++.++
T Consensus 69 ~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSs---------------------faddp~~aA~Sl~~LL 127 (453)
T KOG1385|consen 69 AIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSS---------------------FADDPEEAANSLRPLL 127 (453)
T ss_pred EEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccc---------------------cCCChHHHHHhHHHHH
Q ss_pred HHHHhhhccCCCCCCcEEEEcCCCC---ChhhHHHHHHHhhccCC-CCeEeeecchhhhhhccC----------------
Q 017011 91 EHIFDKELRVTIEEHPVLLTEPPLN---PKINREKMVEIMFEGFE-IPATYVAIQAVLSLYASG---------------- 150 (379)
Q Consensus 91 ~~~~~~~l~~~~~~~~vvl~~~~~~---~~~~~~~l~~~lfe~~~-~~~v~~~~~~~~a~~~~g---------------- 150 (379)
+++-...=....+..||++---.-. +...-+++++.+-|.|. -.-+.....++...=+..
T Consensus 128 d~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWiTiN~Llg~L 207 (453)
T KOG1385|consen 128 DVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWITINYLLGTL 207 (453)
T ss_pred HHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeeeehhhhhccc
Q ss_pred ----CceEEEEeCCCCcEEEE
Q 017011 151 ----RTTGIVMDSGEGVTHVV 167 (379)
Q Consensus 151 ----~~~~lVVDiG~~~t~v~ 167 (379)
..+.=|+|+|+++|.|+
T Consensus 208 ~~~~~~tvgv~DLGGGSTQi~ 228 (453)
T KOG1385|consen 208 GAPGHRTVGVVDLGGGSTQIT 228 (453)
T ss_pred CCCCCCceEEEEcCCceEEEE
No 98
>PRK09698 D-allose kinase; Provisional
Probab=54.33 E-value=23 Score=32.61 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=34.0
Q ss_pred CeEeecCCCCCCC-HHHHHHHHHhhcCC-C--CceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGGTSLIPG-LPDRLAKELCNLAS-P--GVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG~s~i~G-~~~rl~~eL~~~~~-~--~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.|||.||.+..+. +.++|.+.+++.+. . ...+++..+.....+...||+.++-
T Consensus 239 ~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 239 AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 5778777776644 56788888877553 1 2244555555456677789887653
No 99
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.09 E-value=17 Score=33.42 Aligned_cols=52 Identities=8% Similarity=-0.046 Sum_probs=35.5
Q ss_pred HHHhhccCCCCeEeeecchhhhhhcc-------CCceEEEEeCCCCcEEEEEeecCeeccc
Q 017011 124 VEIMFEGFEIPATYVAIQAVLSLYAS-------GRTTGIVMDSGEGVTHVVPIYEGYALPH 177 (379)
Q Consensus 124 ~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~dG~~~~~ 177 (379)
.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.+|.++..
T Consensus 89 ~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 89 RADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 33444556887 77999988877642 3467888889865 45556778887644
No 100
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=51.86 E-value=16 Score=31.05 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=36.2
Q ss_pred hhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 297 MYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 297 l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
-.+.|+++||+++-+-+.+.+.+-+.. ++.+... ..++-+||+++|..
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~------~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGR------PVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTS------EEEEESS---STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCC------ceEeCCC---CchHHHHHHHHHHh
Confidence 466799999999999888888877753 4444433 56788999988754
No 101
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=47.41 E-value=34 Score=35.36 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=19.9
Q ss_pred HHhhccCCCCeEeeecchhhhhhc
Q 017011 125 EIMFEGFEIPATYVAIQAVLSLYA 148 (379)
Q Consensus 125 ~~lfe~~~~~~v~~~~~~~~a~~~ 148 (379)
+.+-+.++++.|.+.++.-|++++
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 444456799999999999999998
No 102
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.23 E-value=1.8e+02 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCcEEEEEeecCeec
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
.-++|||+|.+.|..+-|-++++.
T Consensus 227 ~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEE
Confidence 478999999999999988888664
No 103
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=38.35 E-value=24 Score=33.64 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.9
Q ss_pred cCeEeecCCCCCCCHHHHHHHHH
Q 017011 299 GNVVLSGGTSLIPGLPDRLAKEL 321 (379)
Q Consensus 299 ~nIil~GG~s~i~G~~~rl~~eL 321 (379)
+.|++|||++.=|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999888
No 104
>PRK15027 xylulokinase; Provisional
Probab=37.70 E-value=23 Score=35.23 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=33.4
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|+++||+++-+-+.+.+.+-+. ..|....+.+.++-.||+++|...
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~g--------~pv~~~~~~~~~~a~GaA~lA~~~ 435 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADISG--------QQLDYRTGGDVGPALGAARLAQIA 435 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHhC--------CeEEeecCCCcchHHHHHHHHHHh
Confidence 4579999999998877666666663 233222233446789999998754
No 105
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=37.45 E-value=1.5e+02 Score=30.66 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCChhhHHHHHHHhh
Q 017011 105 HPVLLTEPPLNPKINREKMVEIMF 128 (379)
Q Consensus 105 ~~vvl~~~~~~~~~~~~~l~~~lf 128 (379)
+.+++|.|+.+|...|+.+-+-++
T Consensus 464 RsiILTlPsAmPk~EreIfr~r~~ 487 (1014)
T COG4457 464 RSIILTLPSAMPKQEREIFRQRME 487 (1014)
T ss_pred hhheeeCCccCCchHHHHHHHHHH
Confidence 579999999999988877665554
No 106
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=35.89 E-value=31 Score=30.83 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=36.6
Q ss_pred eEeecCC-CCCCCHHHHHHHHHhhcCCC-CceEEEECCCCCccceeehhhhhhcc
Q 017011 301 VVLSGGT-SLIPGLPDRLAKELCNLASP-GVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 301 Iil~GG~-s~i~G~~~rl~~eL~~~~~~-~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
|-+-|+. -..|+|++++++.|..+++. ..+|.+... ..++-+||++.|.+
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~---~dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLS---EDGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE----SSTHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEe---cCchHHHHHHHHHH
Confidence 3334433 46999999999999999886 346766655 45688999998865
No 107
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=33.27 E-value=49 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=16.1
Q ss_pred CcEEEeCCCceEEEEecCC
Q 017011 10 RSIVCDSGSGSVKTGFAGD 28 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge 28 (379)
..+.||+|...+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3689999999999998754
No 108
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=32.65 E-value=1.2e+02 Score=22.14 Aligned_cols=44 Identities=11% Similarity=-0.043 Sum_probs=24.9
Q ss_pred EEEEeCCCCcEEEEEe-ecCeecccceEEecccHHHHHHHHHHHH
Q 017011 154 GIVMDSGEGVTHVVPI-YEGYALPHAIQRLELAGKDLTDYLTTNL 197 (379)
Q Consensus 154 ~lVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~i~~~l~~~l 197 (379)
.+.||+|...+.++.+ .+|..+........-+...+-+.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i 47 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLI 47 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHH
Confidence 4789999988888877 3666653322222223333444444444
No 109
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=32.43 E-value=3.9e+02 Score=24.36 Aligned_cols=67 Identities=21% Similarity=0.115 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC-CCCceEEEECCCCCccceeehhhhhh
Q 017011 278 AHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA-SPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 278 l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~-~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
|...|...+.-++++ .|+|-||.+..+-|.+.+++.+.+.. +...++.+..+.....+.-.||+.++
T Consensus 233 la~~l~n~~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDPH-------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCCC-------EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 455555555555554 67787777776777788888887543 22224455555445566777888765
No 110
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=32.17 E-value=21 Score=33.67 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=34.5
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECC------CCCccceeehhhhhhc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAP------PQRLHSVWIGGSILAS 352 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~------~~~~~~~w~Gasi~a~ 352 (379)
.++++++||.|.=.-|+++|++.+.+. .++++.+ ++.-+-+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 467999999999888888888776542 3344433 2344568888776555
No 111
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=32.15 E-value=4.9e+02 Score=25.86 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhccC-CCCCCcEEEEcCCCC---ChhhHHHHHHHhhccCC--------CCeEeeec-------chhh
Q 017011 84 DAMERLWEHIFDKELRV-TIEEHPVLLTEPPLN---PKINREKMVEIMFEGFE--------IPATYVAI-------QAVL 144 (379)
Q Consensus 84 ~~~~~~l~~~~~~~l~~-~~~~~~vvl~~~~~~---~~~~~~~l~~~lfe~~~--------~~~v~~~~-------~~~~ 144 (379)
+.++.+++.+- ++... ..+++||.|-.-+-| +....+++++.+...+. ...+.++. .-++
T Consensus 65 ~~l~pLlefA~-~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAK-EHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHH-hhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 34555555554 22222 235678877665444 56667777777754443 12233333 2233
Q ss_pred hhhccC-----------CceEEEEeCCCCcEEEEEeec
Q 017011 145 SLYASG-----------RTTGIVMDSGEGVTHVVPIYE 171 (379)
Q Consensus 145 a~~~~g-----------~~~~lVVDiG~~~t~v~pv~d 171 (379)
+-|..| ..|-=.+|+|+.++.|+=+..
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 333333 345567999999999996543
No 112
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=31.85 E-value=3.9e+02 Score=24.18 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=31.7
Q ss_pred ccCCCCeEeeecchhhhhhcc------CCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 129 EGFEIPATYVAIQAVLSLYAS------GRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+.+++| |++.++.-+++++- +..+.+.|.+|++- -...|.||.++.
T Consensus 94 ~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~Gi-G~giv~~G~~~~ 145 (291)
T PRK05082 94 QLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGV-GGGIVLNGKLLT 145 (291)
T ss_pred HHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCc-ceEEEECCEEee
Confidence 456887 77899888887642 34578888888554 344566887764
No 113
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=31.37 E-value=95 Score=28.61 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=30.7
Q ss_pred EEEEeCCCCcEEEEEeecCeecccceEEecccHH---HHHHHHHHHHhhCC
Q 017011 154 GIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK---DLTDYLTTNLTKDG 201 (379)
Q Consensus 154 ~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~---~i~~~l~~~l~~~~ 201 (379)
.+=||+|+.+|.++.+-++..+ .....+.|++ ...+.+.+++.+.+
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~--~~~~~~tg~~~~~~a~~~l~~~l~~~g 82 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELY--GYNSMRTGNNSPDSAKNALQGIMDKIG 82 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEE--EEEeecCCCCHHHHHHHHHHHHHHHcC
Confidence 3558999999999998877655 3344566653 45555666665444
No 114
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=31.33 E-value=29 Score=32.51 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECC------CCCccceeehhhhhhcc
Q 017011 293 VRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAP------PQRLHSVWIGGSILASL 353 (379)
Q Consensus 293 ~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~------~~~~~~~w~Gasi~a~l 353 (379)
++..=.+.++++||.|.=..|++++++..+.. .++++-+ ++.-+-+|.|...|.+-
T Consensus 257 l~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~-----g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 257 LKHTGKKELVIAGGVAANSRLREMLEEMCKER-----GAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHHhCCCEEEEeccHHHhHHHHHHHHHHHHhc-----CCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 33344456999999998887888877766521 3344333 34456789998888764
No 115
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=30.60 E-value=50 Score=32.60 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=33.6
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|+++||+|+-+-+.+.+.+-+.. ++.+ .. ...++-.||+++|...
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g~------pv~~--~~-~~e~~a~GaA~~a~~~ 438 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFGT------PVDV--PE-GEEGPALGAAILAAWA 438 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhCC------ceee--cC-CCcchHHHHHHHHHHh
Confidence 46799999999998777777766632 3333 22 2347889999988754
No 116
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=30.59 E-value=28 Score=34.08 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=42.6
Q ss_pred CcEEEEcCCC------CChhhHHHHHHHhhccC-CCC---------eEeeecchhhhh-----hccC------CceEEEE
Q 017011 105 HPVLLTEPPL------NPKINREKMVEIMFEGF-EIP---------ATYVAIQAVLSL-----YASG------RTTGIVM 157 (379)
Q Consensus 105 ~~vvl~~~~~------~~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~g------~~~~lVV 157 (379)
..+.++++.+ +....|+.+.+++.+.. +.| .-.+.+.|.+.. ++-+ ...-++|
T Consensus 175 ~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~V 254 (463)
T TIGR01319 175 IFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILI 254 (463)
T ss_pred ceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEE
Confidence 4455666543 34566777777764432 112 222444443332 2222 2457999
Q ss_pred eCCCCcEEEEEeecCeec
Q 017011 158 DSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 158 DiG~~~t~v~pv~dG~~~ 175 (379)
|+|+.+|+|-.+.+|.+-
T Consensus 255 DIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 255 DIGGATTDVHSAAAGELS 272 (463)
T ss_pred EcCccccchhhccCCCcc
Confidence 999999999999999554
No 117
>PRK03011 butyrate kinase; Provisional
Probab=26.53 E-value=83 Score=29.95 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=35.0
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.+-|||+||.+.-+-|.+++++.+..+. .+.|....+...+...||..+-
T Consensus 296 pD~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~rvl 345 (358)
T PRK03011 296 VDAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALRVL 345 (358)
T ss_pred CCEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHHHH
Confidence 3569999999987778888888887653 5677666555556666655443
No 118
>PRK00047 glpK glycerol kinase; Provisional
Probab=25.99 E-value=50 Score=32.94 Aligned_cols=48 Identities=23% Similarity=0.177 Sum_probs=33.1
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|.++||+|+-+-+.+.+.+-+.. + |..... ..++-+||+++|...
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvlg~------p--V~~~~~-~e~~a~GaA~~A~~~ 451 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADILGV------P--VERPVV-AETTALGAAYLAGLA 451 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhhCC------e--eEecCc-ccchHHHHHHHHhhh
Confidence 46799999999998777777666632 3 333222 236789999988754
No 119
>PRK13333 pantothenate kinase; Reviewed
Probab=25.80 E-value=81 Score=27.43 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=17.3
Q ss_pred hhhhhccCCceEEEEeCCCCcEEEEEeecC
Q 017011 143 VLSLYASGRTTGIVMDSGEGVTHVVPIYEG 172 (379)
Q Consensus 143 ~~a~~~~g~~~~lVVDiG~~~t~v~pv~dG 172 (379)
++++++. ..++|||+|...|-= .+.+|
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiTiD-vv~~g 103 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAITVD-IMSNG 103 (206)
T ss_pred HHHhccC--CCeEEEEcCCceEEE-EEcCC
Confidence 3444443 579999999877543 33555
No 120
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=25.76 E-value=49 Score=32.96 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=33.4
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|.++||+|+-+-+.+.+.+-+.. .+.+ ... ..++-+||+++|...
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~g~------pv~~--~~~-~e~~alGaA~~a~~~ 447 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADILGV------PVVR--PKV-TETTALGAAYAAGLA 447 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhcCC------eeEe--cCC-CcchHHHHHHHHHhh
Confidence 45699999999998777777766632 3333 222 346679999988754
No 121
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=24.58 E-value=77 Score=31.65 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=32.8
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|+++||+|+-+-+.+.+.+-+.. .|.+.. . ..++-+||++++...
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~------pV~~~~--~-~e~~alGaAl~aa~a 454 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGK------DIVVPE--M-AETTALGAALLAGLA 454 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCC------ceEecC--c-ccchHHHHHHHHHhh
Confidence 45799999999988776666666632 333322 2 336789999988743
No 122
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.47 E-value=81 Score=29.16 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=33.6
Q ss_pred CeEeecC--CCCCC-CHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGG--TSLIP-GLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG--~s~i~-G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
+|+|+|- .+++| .|.+++++.|.. ++++... .++..|++++|.
T Consensus 265 ~IvLSGs~g~~r~~~~v~~~I~~~L~~------~V~~L~~----ksAA~G~AiIA~ 310 (326)
T TIGR03281 265 GVVLAGSGGTLREPINFSGKIKRVLSC------KVLVLDS----ESAAIGLALIAE 310 (326)
T ss_pred cEEEeCcchhccCchHHHHHHHHHhCC------CeEEecc----hhhhhhHHHHHH
Confidence 7999988 88888 888888888751 5555543 778899998886
No 123
>PF13941 MutL: MutL protein
Probab=24.47 E-value=45 Score=32.83 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCC------ChhhHHHHHHHhhccC-CCC---------eEeeecchhhhh-----hcc-CCceEEEEeCCC
Q 017011 104 EHPVLLTEPPLN------PKINREKMVEIMFEGF-EIP---------ATYVAIQAVLSL-----YAS-GRTTGIVMDSGE 161 (379)
Q Consensus 104 ~~~vvl~~~~~~------~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~~~lVVDiG~ 161 (379)
..+++++++.+. ...-|+.+.+++.+.. +.| .-.+++.|-+.. ++- +...-+|||+|+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 457888876532 3455666666654431 222 223455554433 233 567899999999
Q ss_pred CcEEEEEeecCeecccc
Q 017011 162 GVTHVVPIYEGYALPHA 178 (379)
Q Consensus 162 ~~t~v~pv~dG~~~~~~ 178 (379)
.+|+|--+.+|.+....
T Consensus 258 ATTDVhSv~~~~~~~~~ 274 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIPG 274 (457)
T ss_pred cccchhhhccCCccccc
Confidence 99999999977665333
No 124
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=24.10 E-value=59 Score=28.78 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.9
Q ss_pred cEEEeCCCceEEEEecCCC
Q 017011 11 SIVCDSGSGSVKTGFAGDD 29 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~ 29 (379)
.+.||+||+++|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4899999999999877543
No 125
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=22.52 E-value=50 Score=30.36 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=19.8
Q ss_pred CCCCcEEEeCCCceEEEEecCCCCCCC
Q 017011 7 YEFRSIVCDSGSGSVKTGFAGDDAPCV 33 (379)
Q Consensus 7 ~~~~~vviD~Gs~~~k~G~~ge~~P~~ 33 (379)
...+.|++|+|++|+.++...+..|..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 456899999999999999998888863
No 126
>PF13941 MutL: MutL protein
Probab=22.23 E-value=56 Score=32.19 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=18.8
Q ss_pred CcEEEeCCCceEEEEecC--CCCCCC
Q 017011 10 RSIVCDSGSGSVKTGFAG--DDAPCV 33 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~g--e~~P~~ 33 (379)
..+++|+||++||+-... ++.+++
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ 26 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRL 26 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEE
Confidence 368999999999988776 555553
No 127
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=22.05 E-value=91 Score=27.28 Aligned_cols=77 Identities=18% Similarity=0.386 Sum_probs=42.7
Q ss_pred HHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECC-CCCccceeehhhhhhccccc--ccccccHH--HHh
Q 017011 293 VRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAP-PQRLHSVWIGGSILASLSTF--QQMWITKE--DYM 367 (379)
Q Consensus 293 ~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~-~~~~~~~w~Gasi~a~l~~~--~~~~itr~--ey~ 367 (379)
+-+-.-+.|+++|.+|. |+... -++....| +.++.++.+ ..|.=.+|+||.+++.+-.- .++++..- -|+
T Consensus 71 ldkyAesDvviVGAGSa--GLsAA--Y~I~~~rP-dlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYe 145 (328)
T KOG2960|consen 71 LDKYAESDVVIVGAGSA--GLSAA--YVIAKNRP-DLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYE 145 (328)
T ss_pred HHhhhccceEEECCCcc--cccee--eeeeccCC-CceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcc
Confidence 33444567999998773 22211 11222223 336766654 47788999999999997532 23332211 266
Q ss_pred hcCCccc
Q 017011 368 ESGPSVV 374 (379)
Q Consensus 368 e~G~~~~ 374 (379)
+.|.-.+
T Consensus 146 degdYVV 152 (328)
T KOG2960|consen 146 DEGDYVV 152 (328)
T ss_pred cCCCEEE
Confidence 6665433
No 128
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.85 E-value=1.4e+02 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.0
Q ss_pred EEEEeCCCCcEEEEEeecCeec
Q 017011 154 GIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 154 ~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
-+++|+|.++++|+.. ||.+-
T Consensus 3 ila~DvG~GTqDi~~~-d~~~E 23 (342)
T COG4012 3 ILAIDVGVGTQDIVAY-DGDPE 23 (342)
T ss_pred eEEEEecCCceeEEEe-cCCcc
Confidence 4789999999999854 56443
No 129
>PLN02666 5-oxoprolinase
Probab=21.61 E-value=94 Score=34.96 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCcEEEEEeecCe
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGY 173 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~ 173 (379)
.+.+++|||+.+|+|..| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 130
>PRK03011 butyrate kinase; Provisional
Probab=21.58 E-value=66 Score=30.64 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.5
Q ss_pred CCcEEEeCCCceEEEEecCCCCCC
Q 017011 9 FRSIVCDSGSGSVKTGFAGDDAPC 32 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge~~P~ 32 (379)
...++|.+||++||+++--++.|.
T Consensus 2 ~~il~inpgststk~a~~~~~~~~ 25 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKPI 25 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCcee
Confidence 357999999999999999777665
No 131
>PRK10331 L-fuculokinase; Provisional
Probab=21.49 E-value=1e+02 Score=30.50 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=32.7
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|+++||+++-+-+.+.+.+-+.. .+.+ ... ..++-+||+++|...
T Consensus 390 ~~~i~~~GGga~s~~w~Qi~Advlg~------pV~~--~~~-~e~~a~GaA~la~~~ 437 (470)
T PRK10331 390 ASELLLVGGGSRNALWNQIKANMLDI------PIKV--LDD-AETTVAGAAMFGWYG 437 (470)
T ss_pred CceEEEEcccccCHHHHHHHHHhcCC------eeEe--cCc-ccchHHHHHHHHHHh
Confidence 46799999999988776666655532 3333 222 346789999988764
No 132
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=21.25 E-value=1.7e+02 Score=28.40 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=30.1
Q ss_pred eEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCC
Q 017011 153 TGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDG 201 (379)
Q Consensus 153 ~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~ 201 (379)
--+=||+|+.+|.++.+-++..+.........--..+.+.+.+++.+.+
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~G 193 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAG 193 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcC
Confidence 3456799999999999887766633333221112445555666665444
No 133
>PLN02669 xylulokinase
Probab=20.16 E-value=58 Score=33.06 Aligned_cols=36 Identities=11% Similarity=-0.131 Sum_probs=26.8
Q ss_pred CCeEeeecchhhhhhccCC--ceEEEEeCCCCcEEEEE
Q 017011 133 IPATYVAIQAVLSLYASGR--TTGIVMDSGEGVTHVVP 168 (379)
Q Consensus 133 ~~~v~~~~~~~~a~~~~g~--~~~lVVDiG~~~t~v~p 168 (379)
++.+...-+..|++++.|. ..-+++-+|.+.+.+++
T Consensus 273 ~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~ 310 (556)
T PLN02669 273 CLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGI 310 (556)
T ss_pred CEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEe
Confidence 4566777788888888886 36688889988775443
Done!