Query 017011
Match_columns 379
No_of_seqs 136 out of 1383
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 100.0 1.6E-80 5.5E-85 597.3 26.8 370 7-379 3-422 (427)
2 3qb0_A Actin-related protein 4 100.0 4.6E-78 1.6E-82 585.0 30.4 365 5-378 19-497 (498)
3 2fxu_A Alpha-actin-1, actin, a 100.0 1.2E-76 4.3E-81 565.8 33.4 374 6-379 2-375 (375)
4 1k8k_B ARP2, actin-like protei 100.0 2E-75 6.9E-80 560.3 16.0 371 6-376 3-388 (394)
5 4fo0_A Actin-related protein 8 100.0 1E-71 3.5E-76 562.8 25.7 374 5-379 11-590 (593)
6 1k8k_A ARP3, actin-like protei 100.0 3.2E-70 1.1E-74 529.3 31.3 370 7-378 3-412 (418)
7 4am6_A Actin-like protein ARP8 100.0 6E-60 2E-64 460.8 26.1 366 5-379 36-652 (655)
8 1jce_A ROD shape-determining p 100.0 5.3E-36 1.8E-40 282.4 22.5 308 10-357 4-330 (344)
9 2v7y_A Chaperone protein DNAK; 99.9 3.8E-26 1.3E-30 225.4 8.9 295 10-353 3-350 (509)
10 3h1q_A Ethanolamine utilizatio 99.9 2.1E-24 7.3E-29 196.3 17.5 245 8-351 27-272 (272)
11 1dkg_D Molecular chaperone DNA 99.9 6E-24 2E-28 202.9 14.7 304 10-353 3-381 (383)
12 3qfu_A 78 kDa glucose-regulate 99.9 1.1E-23 3.8E-28 201.7 15.4 309 9-353 18-392 (394)
13 3i33_A Heat shock-related 70 k 99.9 1.2E-22 4E-27 195.3 12.2 311 8-354 22-401 (404)
14 2kho_A Heat shock protein 70; 99.8 1.2E-20 3.9E-25 189.6 15.5 298 10-353 3-381 (605)
15 1yuw_A Heat shock cognate 71 k 99.8 2.1E-20 7.1E-25 186.0 14.3 305 10-353 5-379 (554)
16 4gni_A Putative heat shock pro 99.8 6.5E-20 2.2E-24 176.4 11.2 239 84-355 129-402 (409)
17 3d2f_A Heat shock protein homo 99.8 1.7E-19 5.8E-24 182.6 12.5 214 104-353 138-382 (675)
18 4b9q_A Chaperone protein DNAK; 99.8 4.1E-18 1.4E-22 171.1 16.6 297 10-353 3-381 (605)
19 2ych_A Competence protein PILM 99.7 2.3E-17 8E-22 156.8 16.4 170 121-322 154-331 (377)
20 2fsj_A Hypothetical protein TA 99.7 1.9E-17 6.5E-22 155.3 10.7 178 10-199 22-239 (346)
21 4a2a_A Cell division protein F 99.7 3.9E-16 1.3E-20 149.6 17.3 199 118-354 168-394 (419)
22 2zgy_A Plasmid segregation pro 99.6 1.2E-14 4.1E-19 134.9 10.5 288 11-352 2-320 (320)
23 4apw_A ALP12; actin-like prote 99.5 2.7E-14 9.3E-19 132.8 6.3 186 4-199 2-219 (329)
24 3js6_A Uncharacterized PARM pr 99.4 2E-13 6.8E-18 128.1 7.3 185 10-200 5-232 (355)
25 2d0o_A DIOL dehydratase-reacti 98.9 1.8E-09 6.1E-14 103.1 9.1 183 140-351 390-602 (610)
26 1nbw_A Glycerol dehydratase re 98.9 1.9E-09 6.4E-14 103.3 8.6 181 140-350 392-603 (607)
27 4ehu_A Activator of 2-hydroxyi 98.4 2.2E-06 7.6E-11 77.2 11.9 170 135-353 73-254 (276)
28 1hux_A Activator of (R)-2-hydr 97.6 4.5E-05 1.5E-09 68.3 5.2 49 298-354 209-257 (270)
29 2ews_A Pantothenate kinase; PA 96.9 0.0065 2.2E-07 54.4 10.8 51 296-351 235-286 (287)
30 1t6c_A Exopolyphosphatase; alp 96.9 0.0022 7.7E-08 58.5 7.8 75 116-193 95-177 (315)
31 3mdq_A Exopolyphosphatase; str 96.4 0.0028 9.5E-08 57.9 4.8 73 118-193 89-170 (315)
32 4db3_A Glcnac kinase, N-acetyl 96.3 0.11 3.8E-06 47.4 15.0 52 300-351 272-324 (327)
33 3vgl_A Glucokinase; ROK family 96.2 0.058 2E-06 49.1 12.8 46 129-176 94-146 (321)
34 1u6z_A Exopolyphosphatase; alp 96.2 0.011 3.8E-07 57.7 8.1 75 116-193 94-176 (513)
35 2gup_A ROK family protein; sug 96.1 0.036 1.2E-06 49.7 10.5 52 123-177 87-143 (292)
36 3cer_A Possible exopolyphospha 96.0 0.0052 1.8E-07 56.7 4.7 75 118-193 102-191 (343)
37 2i7n_A Pantothenate kinase 1; 95.9 0.026 9E-07 52.0 8.8 56 294-351 302-358 (360)
38 2qm1_A Glucokinase; alpha-beta 95.9 0.057 1.9E-06 49.1 11.0 45 130-176 107-158 (326)
39 3hi0_A Putative exopolyphospha 95.9 0.035 1.2E-06 54.1 9.9 74 116-192 98-178 (508)
40 3r8e_A Hypothetical sugar kina 95.9 0.053 1.8E-06 49.4 10.7 46 129-176 115-168 (321)
41 3vov_A Glucokinase, hexokinase 95.5 0.26 8.8E-06 44.4 13.8 53 300-352 240-294 (302)
42 4htl_A Beta-glucoside kinase; 94.0 3.2 0.00011 37.0 20.3 51 300-352 240-290 (297)
43 2ap1_A Putative regulator prot 93.4 0.55 1.9E-05 42.6 10.8 46 130-177 119-171 (327)
44 3aap_A Ectonucleoside triphosp 92.8 0.19 6.4E-06 46.4 6.6 36 152-187 140-177 (353)
45 2ch5_A NAGK protein; transfera 92.7 2.4 8.3E-05 38.5 14.3 91 83-174 49-143 (347)
46 3cet_A Conserved archaeal prot 92.2 0.093 3.2E-06 47.5 3.6 26 152-177 127-152 (334)
47 3djc_A Type III pantothenate k 90.4 2.3 7.9E-05 37.3 10.7 18 11-28 4-21 (266)
48 2h3g_X Biosynthetic protein; p 90.3 1.1 3.8E-05 39.5 8.6 17 12-28 3-19 (268)
49 3zx3_A Ectonucleoside triphosp 86.8 1.9 6.4E-05 41.0 8.1 88 84-172 89-201 (452)
50 3bex_A Type III pantothenate k 86.1 2.4 8.1E-05 36.9 7.9 24 151-175 121-144 (249)
51 1zbs_A Hypothetical protein PG 85.6 5.9 0.0002 35.0 10.5 69 106-175 62-132 (291)
52 1zc6_A Probable N-acetylglucos 78.6 19 0.00064 31.9 11.1 88 83-175 53-145 (305)
53 1woq_A Inorganic polyphosphate 69.9 26 0.00088 30.2 9.5 46 129-176 112-165 (267)
54 2aa4_A Mannac kinase, putative 64.4 3.2 0.00011 36.6 2.4 51 300-351 236-286 (289)
55 1zxo_A Conserved hypothetical 59.5 8 0.00027 34.1 4.1 68 107-175 61-130 (291)
56 2yhw_A Bifunctional UDP-N-acet 59.3 14 0.00049 33.2 5.9 44 131-176 131-181 (343)
57 1saz_A Probable butyrate kinas 57.5 10 0.00034 35.1 4.6 74 299-376 297-376 (381)
58 2e2o_A Hexokinase; acetate and 56.0 79 0.0027 27.5 10.2 56 106-163 62-118 (299)
59 2hoe_A N-acetylglucosamine kin 53.5 57 0.002 29.7 9.1 47 129-177 186-237 (380)
60 2hoe_A N-acetylglucosamine kin 51.0 6.7 0.00023 36.2 2.2 53 300-352 317-370 (380)
61 3epq_A Putative fructokinase; 49.8 10 0.00035 33.8 3.1 68 278-352 212-288 (302)
62 1saz_A Probable butyrate kinas 45.4 1.3E+02 0.0046 27.3 10.2 54 122-177 111-200 (381)
63 2yhx_A Hexokinase B; transfera 41.6 17 0.00057 34.6 3.3 52 300-354 386-443 (457)
64 3mcp_A Glucokinase; structural 40.1 2.1E+02 0.0073 25.9 11.1 133 3-178 3-173 (366)
65 3htv_A D-allose kinase, alloki 39.9 19 0.00064 32.1 3.3 59 300-358 242-304 (310)
66 2itm_A Xylulose kinase, xylulo 35.6 18 0.00061 34.5 2.6 49 298-354 387-435 (484)
67 3qbx_A Anhydro-N-acetylmuramic 32.9 15 0.00051 33.7 1.4 23 299-321 285-307 (371)
68 3o8m_A Hexokinase; rnaseh-like 31.8 1.3E+02 0.0045 28.6 7.8 131 4-169 75-243 (485)
69 3cj1_A Ectonucleoside triphosp 30.9 36 0.0012 32.3 3.7 22 152-173 190-211 (456)
70 1bdg_A Hexokinase; phosphotran 30.6 30 0.001 32.7 3.1 51 301-354 396-447 (451)
71 2e2o_A Hexokinase; acetate and 30.1 13 0.00044 32.7 0.5 45 300-352 242-286 (299)
72 3cqy_A Anhydro-N-acetylmuramic 29.6 18 0.00062 33.1 1.4 23 299-321 291-313 (370)
73 2q2r_A Glucokinase 1, putative 27.3 13 0.00043 34.2 -0.1 45 131-176 127-205 (373)
74 1cza_N Hexokinase type I; stru 25.8 21 0.00073 37.1 1.3 51 300-354 409-460 (917)
75 2zf5_O Glycerol kinase; hypert 25.7 25 0.00087 33.6 1.7 48 298-354 394-441 (497)
76 2yhw_A Bifunctional UDP-N-acet 25.1 31 0.0011 31.0 2.1 49 300-351 287-336 (343)
77 3djc_A Type III pantothenate k 24.9 1.5E+02 0.0053 25.5 6.5 48 154-201 4-52 (266)
78 3hz6_A Xylulokinase; xylulose, 24.2 27 0.00092 33.6 1.6 48 298-354 403-451 (511)
79 2aa4_A Mannac kinase, putative 22.4 1.1E+02 0.0038 26.3 5.2 45 129-176 94-145 (289)
80 2ivn_A O-sialoglycoprotein end 22.0 37 0.0013 30.4 2.0 27 298-324 245-271 (330)
81 2jsh_A Appetite-regulating hor 21.9 21 0.00073 18.9 0.2 15 358-372 8-22 (26)
82 3hm8_A Hexokinase-3; glucose, 20.6 47 0.0016 31.3 2.4 50 301-354 386-437 (445)
83 2dpn_A Glycerol kinase; thermu 20.0 48 0.0016 31.6 2.4 47 299-354 400-446 (495)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-80 Score=597.33 Aligned_cols=370 Identities=36% Similarity=0.616 Sum_probs=321.6
Q ss_pred CCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCC----------------------CccccCCCcceeecchhhh
Q 017011 7 YEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNK----------------------NSMIGIGQKDMYFGDEAQA 64 (379)
Q Consensus 7 ~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~----------------------~~~~~~~~~~~~vg~~a~~ 64 (379)
.+.++||||+||+++|+||+|++.|++++||+++++++. ..+.+..+.+++||++|..
T Consensus 3 ~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~ 82 (427)
T 3dwl_A 3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALK 82 (427)
T ss_dssp CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHH
T ss_pred CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhh
Confidence 357899999999999999999999999999999998753 1122445568899999988
Q ss_pred ccC-CeeeeccccCCcccCHHHHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchh
Q 017011 65 KRG-VLRLSHPVNRGMVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAV 143 (379)
Q Consensus 65 ~~~-~~~~~~p~~~g~i~~~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~ 143 (379)
.+. .+.+++|+++|.|.|||.+|++|+|+|.+.|++++.++|+++++|++++...|+++++++||.|++++++++.+++
T Consensus 83 ~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v 162 (427)
T 3dwl_A 83 KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV 162 (427)
T ss_dssp THHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred CcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence 764 6889999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC--------CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHH
Q 017011 144 LSLYASG--------RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRD 215 (379)
Q Consensus 144 ~a~~~~g--------~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 215 (379)
+|+|++| .++|+|||+|+++|+|+||++|+++.+++.++++||++++++|.++|.++++. ..+.+.+++
T Consensus 163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~ 239 (427)
T 3dwl_A 163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAER 239 (427)
T ss_dssp HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHH
T ss_pred HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHH
Confidence 9999998 68999999999999999999999999999999999999999999999887765 456788999
Q ss_pred HHHHcccCccCHHHHHHhcccCCCCcceEEc--cCCc--eeccCcccccccccccCCCCCCCC-CCCHHHHHHHHHHhCC
Q 017011 216 IKERLSYVAMDFQKELAMSKESSQLDKQYEL--PDGQ--VITIGAAQFKGPEVLFDPSRMGLE-TEGAHEILVRAIMRSD 290 (379)
Q Consensus 216 ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~ 290 (379)
+|+++||++.|+.++.+.........+.|.+ |||. .+.++.+||++||+||+|++++.+ ..+|+++|.++|++||
T Consensus 240 IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~ 319 (427)
T 3dwl_A 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSP 319 (427)
T ss_dssp HHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSC
T ss_pred HHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCC
Confidence 9999999999998887655433333456777 7886 788999999999999999999988 4899999999999999
Q ss_pred HHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC--------------CCCceEEEECCCCCccceeehhhhhhccccc
Q 017011 291 MDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA--------------SPGVGVRVVAPPQRLHSVWIGGSILASLSTF 356 (379)
Q Consensus 291 ~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~--------------~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~ 356 (379)
+|+|+.|++|||||||+|++|||.+||++||+.++ |...+++|.++++|.+++|+|||++|++++|
T Consensus 320 ~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f 399 (427)
T 3dwl_A 320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399 (427)
T ss_dssp HHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTH
T ss_pred HHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccch
Confidence 99999999999999999999999999999999886 4456789999999999999999999999999
Q ss_pred ccccccHHHHhhcCCcccccccC
Q 017011 357 QQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 357 ~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
+++||||+||+|+|+++++||++
T Consensus 400 ~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 400 GSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp HHHSEEHHHHHHSCGGGGSCCCC
T ss_pred hheeEEHHHHhhhChHhheeccc
Confidence 99999999999999999999874
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-78 Score=585.02 Aligned_cols=365 Identities=31% Similarity=0.529 Sum_probs=329.9
Q ss_pred CcCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecch-hhhccCCeeeeccccCCcccCH
Q 017011 5 DLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDE-AQAKRGVLRLSHPVNRGMVRDW 83 (379)
Q Consensus 5 ~~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~-a~~~~~~~~~~~p~~~g~i~~~ 83 (379)
+.++..+||||+||+++|+||+|++.|++++||+++++++.. .+..++|++ +...++.+.+++|+++|.|.||
T Consensus 19 ggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~------~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dw 92 (498)
T 3qb0_A 19 GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE------GNKKIFSEQSIGIPRKDYELKPIIENGLVIDW 92 (498)
T ss_dssp CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS------SCCEECCTTGGGSCCTTEEEEESEETTEESCH
T ss_pred CCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC------CccEEEecHHHhcCcCceEEeccCcCCEEccH
Confidence 457788999999999999999999999999999999987532 356789986 5656788999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCC-cEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCC
Q 017011 84 DAMERLWEHIFDKELRVTIEEH-PVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEG 162 (379)
Q Consensus 84 ~~~~~~l~~~~~~~l~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~ 162 (379)
|++|.+|+|+|.+.|++++.++ ||+|++|++++...|+++++++||.+++++++++.++++++|++|+++|+|||+|++
T Consensus 93 d~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g 172 (498)
T 3qb0_A 93 DTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHD 172 (498)
T ss_dssp HHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSS
T ss_pred HHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCC
Confidence 9999999999988899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhC------------------CCcccch------h-HHHHHHHHH
Q 017011 163 VTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKD------------------GYIFTTS------A-EREIVRDIK 217 (379)
Q Consensus 163 ~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~------------------~~~~~~~------~-~~~~~~~ik 217 (379)
.|+|+||++|+++++++.++++||++++++|.++|.++ ++.+... . +.+.++++|
T Consensus 173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK 252 (498)
T 3qb0_A 173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK 252 (498)
T ss_dssp CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864 2233221 2 455899999
Q ss_pred HHcccCccC--HHHHHHhcccCCCCcceEEccCCceeccCcc-cccccccccCCCCCCC---------------------
Q 017011 218 ERLSYVAMD--FQKELAMSKESSQLDKQYELPDGQVITIGAA-QFKGPEVLFDPSRMGL--------------------- 273 (379)
Q Consensus 218 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~-~~~~~E~lF~p~~~~~--------------------- 273 (379)
+++||++.+ ++.+... ......+.|++|||+.|.++.+ ||++||.||+|+.++.
T Consensus 253 E~~c~Va~~~~~~~~~~~--~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~ 330 (498)
T 3qb0_A 253 ETLCHICPTKTLEETKTE--LSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP 330 (498)
T ss_dssp HHTCCCCSSCHHHHHHHH--HHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred HhhEEecCCccHhHHhhh--ccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence 999999987 4444221 1234678999999999999999 9999999999987643
Q ss_pred -----------------------------------------------------------CCCCHHHHHHHHHHhCCHHHH
Q 017011 274 -----------------------------------------------------------ETEGAHEILVRAIMRSDMDVR 294 (379)
Q Consensus 274 -----------------------------------------------------------~~~~l~~~i~~~i~~~~~~~r 294 (379)
+..||+++|.++|++||.|+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r 410 (498)
T 3qb0_A 331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR 410 (498)
T ss_dssp CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence 457899999999999999999
Q ss_pred HhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECC---CCCccceeehhhhhhcccccccccccHHHHhhcCC
Q 017011 295 REMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAP---PQRLHSVWIGGSILASLSTFQQMWITKEDYMESGP 371 (379)
Q Consensus 295 ~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~---~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 371 (379)
+.|++||||+||+|++|||.+||++||+.++| ..+++|+++ +++.+++|+|||++|++++|+++||||+||+|+|+
T Consensus 411 ~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~ 489 (498)
T 3qb0_A 411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGV 489 (498)
T ss_dssp HHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCC
T ss_pred HHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCc
Confidence 99999999999999999999999999999999 779999987 68899999999999999999999999999999999
Q ss_pred -ccccccc
Q 017011 372 -SVVHMKC 378 (379)
Q Consensus 372 -~~~~~k~ 378 (379)
++++|||
T Consensus 490 ~~iv~~kc 497 (498)
T 3qb0_A 490 ERLLNDRF 497 (498)
T ss_dssp HHHHHHTT
T ss_pred HhhccccC
Confidence 8999998
No 3
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=1.2e-76 Score=565.80 Aligned_cols=374 Identities=64% Similarity=1.105 Sum_probs=341.3
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~ 85 (379)
.++.++||||+||+++|+||+|++.|++++||+++++++..+..+.+.+++++|++|...++...+++|+++|.+.||+.
T Consensus 2 ~~~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~ 81 (375)
T 2fxu_A 2 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD 81 (375)
T ss_dssp --CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHH
T ss_pred CCCCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHH
Confidence 35678999999999999999999999999999999988766555555577899999998888899999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEE
Q 017011 86 MERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTH 165 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 165 (379)
++.+|+|+|.+.|+.++.++++++++|++++..+|+++++++||.+++++++++++|+||+|++|.++++|||+|+++|+
T Consensus 82 ~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~ 161 (375)
T 2fxu_A 82 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH 161 (375)
T ss_dssp HHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEE
T ss_pred HHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceE
Confidence 99999999988899999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEE
Q 017011 166 VVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYE 245 (379)
Q Consensus 166 v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
|+||++|+++.++..++++||++++++|.++|..+++++....+.+.++++|+++|++..++..+.+...........|.
T Consensus 162 v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~ 241 (375)
T 2fxu_A 162 NVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 241 (375)
T ss_dssp EEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred EeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEE
Confidence 99999999999888999999999999999999988887766677889999999999999998887765544445678899
Q ss_pred ccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcC
Q 017011 246 LPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLA 325 (379)
Q Consensus 246 lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~ 325 (379)
+|||+.+.++.+||.++|.||+|++++.+..+|.++|.++|.+||.++|+.+++||+||||+|++|||.+||+++|..+.
T Consensus 242 lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~ 321 (375)
T 2fxu_A 242 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA 321 (375)
T ss_dssp CTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred CCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 326 SPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 326 ~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
|...+++|..+++|.+++|+||+++|++++|++.||||+||+|+|+++++||||
T Consensus 322 p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 322 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp CTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred CCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence 887788999999999999999999999999999999999999999999999997
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=2e-75 Score=560.25 Aligned_cols=371 Identities=43% Similarity=0.839 Sum_probs=164.1
Q ss_pred cCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCcc-c-cCCCcceeecchhhhccCCeeeeccccCCcccCH
Q 017011 6 LYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSM-I-GIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDW 83 (379)
Q Consensus 6 ~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~-~-~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~ 83 (379)
..+.++||||+||+++|+||+|++.|++++||+++++++.... . +...+++++|++|...++.+.+++|+++|.+.||
T Consensus 3 ~~~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dw 82 (394)
T 1k8k_B 3 SQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNW 82 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecH
Confidence 3466889999999999999999999999999999988765432 1 2234678999999888878889999999999999
Q ss_pred HHHHHHHHHHH-hhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCC
Q 017011 84 DAMERLWEHIF-DKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEG 162 (379)
Q Consensus 84 ~~~~~~l~~~~-~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~ 162 (379)
+.++.+|+|+| .+.|+.++.++++++++|++++..+|+++++++||.+++++++++++|+||+|++|.++++|||+|++
T Consensus 83 d~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g 162 (394)
T 1k8k_B 83 DDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDG 162 (394)
T ss_dssp -----------------------------------------------------------------------CCEEEECSS
T ss_pred HHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCC
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcc
Q 017011 163 VTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDK 242 (379)
Q Consensus 163 ~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (379)
+|+|+||++|+++.+++.++++||++++++|.++|..+++++.+..+.+.++++|+++|+++.++..+.+..........
T Consensus 163 ~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~ 242 (394)
T 1k8k_B 163 VTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVE 242 (394)
T ss_dssp CEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCE
T ss_pred ceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCce
Confidence 99999999999999988999999999999999999998888876678899999999999999988777654433344567
Q ss_pred eEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHh
Q 017011 243 QYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELC 322 (379)
Q Consensus 243 ~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~ 322 (379)
.|++|||+.+.++.+||.+||+||+|++++.+..+|+++|.++|.+||.++|+.+++||+||||+|++|||.+||+++|+
T Consensus 243 ~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~ 322 (394)
T 1k8k_B 243 SYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELK 322 (394)
T ss_dssp EEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHH
T ss_pred EEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-----------CCCceEEEECCCCCccceeehhhhhhcccccc-cccccHHHHhhcCCccccc
Q 017011 323 NLA-----------SPGVGVRVVAPPQRLHSVWIGGSILASLSTFQ-QMWITKEDYMESGPSVVHM 376 (379)
Q Consensus 323 ~~~-----------~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~-~~~itr~ey~e~G~~~~~~ 376 (379)
.+. |...+++|..+++|.+++|+|||++|++++|+ +.||||+||+|+|+++++|
T Consensus 323 ~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 323 QLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp HHHHHHTCSSCCCTTCCCCC----------------------------------------------
T ss_pred HHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 877 76668889888999999999999999999999 9999999999999999987
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-71 Score=562.84 Aligned_cols=374 Identities=19% Similarity=0.334 Sum_probs=295.2
Q ss_pred CcCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCc-------------------------------------
Q 017011 5 DLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNS------------------------------------- 47 (379)
Q Consensus 5 ~~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~------------------------------------- 47 (379)
...++++||||+||.++|+|||||+.|+. +|+++++++....
T Consensus 11 ~~~~~~iIVIdpGS~~~riG~A~d~~P~~-iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (593)
T 4fo0_A 11 QIQSNFIIVIHPGSTTLRIGRATDTLPAS-IPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSK 89 (593)
T ss_dssp TSGGGGEEEEECCSSEEEEEETTCSSCEE-EECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEeCCCCCeEeeecCCCCCCe-eeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHH
Confidence 34456789999999999999999999975 6999998643210
Q ss_pred ------------------------------------cccCCCcceeecchhhhc--cCCeeeeccccCC-----------
Q 017011 48 ------------------------------------MIGIGQKDMYFGDEAQAK--RGVLRLSHPVNRG----------- 78 (379)
Q Consensus 48 ------------------------------------~~~~~~~~~~vg~~a~~~--~~~~~~~~p~~~g----------- 78 (379)
......+++++|++|... ++.+.+++|+++|
T Consensus 90 ~~~~~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s 169 (593)
T 4fo0_A 90 KMSNGTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGS 169 (593)
T ss_dssp CCTTSCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCS
T ss_pred hhhcccccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHhhcCCcccceEecCcccCccccccCCccc
Confidence 001224568999999753 6679999999999
Q ss_pred cccCHHHHHHHHHHHHhhhccCCCCC---CcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEE
Q 017011 79 MVRDWDAMERLWEHIFDKELRVTIEE---HPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGI 155 (379)
Q Consensus 79 ~i~~~~~~~~~l~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~l 155 (379)
.+.+|+++|.+|+|+|.+.|++.+++ ++|+|++|+++++..|+++++++||.|+||++++.++++|++|++|++|||
T Consensus 170 ~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tgl 249 (593)
T 4fo0_A 170 LTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTC 249 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEE
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceE
Confidence 46799999999999999999998765 899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCccc-----chhHHHHHHHHHHHcccCccCHHHH
Q 017011 156 VMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFT-----TSAEREIVRDIKERLSYVAMDFQKE 230 (379)
Q Consensus 156 VVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~-----~~~~~~~~~~ik~~~~~~~~~~~~~ 230 (379)
|||+|++.|+|+||+||+++.+++.++++||+++|++|.++|..+++.+. ...+++.++++|+++||++.++..+
T Consensus 250 VVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~ 329 (593)
T 4fo0_A 250 IVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGL 329 (593)
T ss_dssp EEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSC
T ss_pred EEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHh
Confidence 99999999999999999999999999999999999999999999887654 3457889999999999998764211
Q ss_pred HH-----------------------------hc------------------------------------------ccCCC
Q 017011 231 LA-----------------------------MS------------------------------------------KESSQ 239 (379)
Q Consensus 231 ~~-----------------------------~~------------------------------------------~~~~~ 239 (379)
.. .+ .....
T Consensus 330 ~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (593)
T 4fo0_A 330 QDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATA 409 (593)
T ss_dssp EEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC------------------------------
T ss_pred hhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccc
Confidence 00 00 00011
Q ss_pred CcceEEccCCceeccCcccccccccccCCCCCC--------------------------------CCCCCHHHHHHHHHH
Q 017011 240 LDKQYELPDGQVITIGAAQFKGPEVLFDPSRMG--------------------------------LETEGAHEILVRAIM 287 (379)
Q Consensus 240 ~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~--------------------------------~~~~~l~~~i~~~i~ 287 (379)
....+..|++..+.++.+++.+||.+|+|+... .+..+|+++|.++|.
T Consensus 410 ~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~ 489 (593)
T 4fo0_A 410 DRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSID 489 (593)
T ss_dssp -------------------------------------------------------------CHHHHSCCCHHHHHHHHHH
T ss_pred ccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 234677889999999999999999999996421 134689999999999
Q ss_pred hCC-HHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCc-----eEEEECCC---CCccceeehhhhhhccccccc
Q 017011 288 RSD-MDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGV-----GVRVVAPP---QRLHSVWIGGSILASLSTFQQ 358 (379)
Q Consensus 288 ~~~-~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~-----~i~v~~~~---~~~~~~w~Gasi~a~l~~~~~ 358 (379)
+|+ .|+|+.|++||+||||+|++|||.+||++||+.++|... +++|+.++ +|.+++|+|||++|++++|++
T Consensus 490 ~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~ 569 (593)
T 4fo0_A 490 CCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQE 569 (593)
T ss_dssp TCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGG
T ss_pred hCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHH
Confidence 998 699999999999999999999999999999999998542 58898875 899999999999999999999
Q ss_pred ccccHHHHhhcCCcccccccC
Q 017011 359 MWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 359 ~~itr~ey~e~G~~~~~~k~~ 379 (379)
+||||+||+|+|+++|+|||.
T Consensus 570 ~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 570 LWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp TCEEHHHHHHHTTHHHHHHCS
T ss_pred eeECHHHHHhhCcHHHhhcCC
Confidence 999999999999999999994
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=3.2e-70 Score=529.30 Aligned_cols=370 Identities=38% Similarity=0.624 Sum_probs=331.4
Q ss_pred CCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCc--------cccCCCcceeecchhhhccCCeeeeccccCC
Q 017011 7 YEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNS--------MIGIGQKDMYFGDEAQAKRGVLRLSHPVNRG 78 (379)
Q Consensus 7 ~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~--------~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g 78 (379)
.+.++||||+||+++|+||+|++.|+.++||+++++++... ..+....++++|++|...++ ..+++|+++|
T Consensus 3 ~~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~-~~~~~pi~~G 81 (418)
T 1k8k_A 3 GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPT-YATKWPIRHG 81 (418)
T ss_dssp CCSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTT-SEEECCEETT
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCC-CEEeccccCC
Confidence 45689999999999999999999999999999998765421 22223346899999988764 7899999999
Q ss_pred cccCHHHHHHHHHHHHhhhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhc---------c
Q 017011 79 MVRDWDAMERLWEHIFDKELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYA---------S 149 (379)
Q Consensus 79 ~i~~~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~---------~ 149 (379)
.+.||+.++.+|+|+|.+.|+.++.++++++++|++++..+|+++.+++||.++++.++++++|+||+|+ .
T Consensus 82 ~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~ 161 (418)
T 1k8k_A 82 IVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER 161 (418)
T ss_dssp EESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC
T ss_pred EECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC
Confidence 9999999999999999878998888999999999999999999999999999999999999999999998 5
Q ss_pred CCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHH
Q 017011 150 GRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQK 229 (379)
Q Consensus 150 g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~ 229 (379)
+. +|+|||+|+++|+|+||++|+++.+++..+++||++++++|.++|.+++.++....+.+.++++|+++|++..++..
T Consensus 162 ~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~ 240 (418)
T 1k8k_A 162 TL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVK 240 (418)
T ss_dssp CC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHH
T ss_pred CC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHH
Confidence 66 99999999999999999999999998899999999999999999998888776667889999999999999998877
Q ss_pred HHHhcccC-CCCcceEEccCCc-----eeccCcccccccccccCCCCCCCCC-CCHHHHHHHHHHhCCHHHHHhhhcCeE
Q 017011 230 ELAMSKES-SQLDKQYELPDGQ-----VITIGAAQFKGPEVLFDPSRMGLET-EGAHEILVRAIMRSDMDVRREMYGNVV 302 (379)
Q Consensus 230 ~~~~~~~~-~~~~~~~~lp~~~-----~i~i~~~~~~~~E~lF~p~~~~~~~-~~l~~~i~~~i~~~~~~~r~~l~~nIi 302 (379)
++++.... ......|.+||+. .+.++.+||.+||+||+|++++.+. .+|.++|.++|++||.++|+.+++||+
T Consensus 241 e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~Iv 320 (418)
T 1k8k_A 241 EFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIV 320 (418)
T ss_dssp HHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEE
T ss_pred HHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceE
Confidence 76543221 2234689999988 8999999999999999999887764 799999999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHhhcC----------------CCCceEEEECCCCCccceeehhhhhhcccccccccccHHHH
Q 017011 303 LSGGTSLIPGLPDRLAKELCNLA----------------SPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQMWITKEDY 366 (379)
Q Consensus 303 l~GG~s~i~G~~~rl~~eL~~~~----------------~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey 366 (379)
||||+|++|||.+||+++|...+ |...+++|..+++|.+++|+|||++|++++|++.||||+||
T Consensus 321 L~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey 400 (418)
T 1k8k_A 321 LSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDY 400 (418)
T ss_dssp EESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHH
T ss_pred EeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHH
Confidence 99999999999999999998875 55567889999999999999999999999999999999999
Q ss_pred hhcCCccccccc
Q 017011 367 MESGPSVVHMKC 378 (379)
Q Consensus 367 ~e~G~~~~~~k~ 378 (379)
+|+|+++++|||
T Consensus 401 ~e~G~~~~~~~~ 412 (418)
T 1k8k_A 401 EEIGPSICRHNP 412 (418)
T ss_dssp HHHCGGGGGCCC
T ss_pred hhhCHHHHhhhc
Confidence 999999999965
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=6e-60 Score=460.80 Aligned_cols=366 Identities=22% Similarity=0.395 Sum_probs=304.0
Q ss_pred CcCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCC---------Cc----------------------------
Q 017011 5 DLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNK---------NS---------------------------- 47 (379)
Q Consensus 5 ~~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~---------~~---------------------------- 47 (379)
..+...+|||++||.++|+|+|.|..|. .+|++++++... ..
T Consensus 36 ~~~~~~~IVIHpGS~~lRIG~AsD~~P~-~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~ 114 (655)
T 4am6_A 36 LNDPTATIVIHPGSNSIKIGFPKDDHPV-VVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRY 114 (655)
T ss_dssp CCCGGGEEEEECCSSEEEEECTTSSSCE-EEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCcceeeeecCCCCCc-ccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3556788999999999999999999998 668888864310 00
Q ss_pred ---------------------------------cccC-CCcceeecchhhhc-cCCeeeeccccCCccc----C------
Q 017011 48 ---------------------------------MIGI-GQKDMYFGDEAQAK-RGVLRLSHPVNRGMVR----D------ 82 (379)
Q Consensus 48 ---------------------------------~~~~-~~~~~~vg~~a~~~-~~~~~~~~p~~~g~i~----~------ 82 (379)
..+. ..++++||++|..+ ++.+.+++|+++|.+. |
T Consensus 115 ~k~r~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~ 194 (655)
T 4am6_A 115 YKRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAE 194 (655)
T ss_dssp HSCCCSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHH
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHhhCCccCeEEeccccCCEecccCCccccccc
Confidence 0000 12478899999884 7789999999999998 8
Q ss_pred -HHHHHHHHHHHHhh-hccCCCC---CCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccC-CceEEE
Q 017011 83 -WDAMERLWEHIFDK-ELRVTIE---EHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASG-RTTGIV 156 (379)
Q Consensus 83 -~~~~~~~l~~~~~~-~l~~~~~---~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-~~~~lV 156 (379)
||.++.+|+|+|.+ .|++++. +++|+|++|++++...|+++++++||.|++++++++.++++++|++| .++|||
T Consensus 195 ~WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLV 274 (655)
T 4am6_A 195 LISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCV 274 (655)
T ss_dssp HHHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEE
T ss_pred cHHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEE
Confidence 99999999999973 8999886 79999999999999999999999999999999999999999999999 699999
Q ss_pred EeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCC-----cccchhHHHHHHHHHHHcccC-ccCHHHH
Q 017011 157 MDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGY-----IFTTSAEREIVRDIKERLSYV-AMDFQKE 230 (379)
Q Consensus 157 VDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----~~~~~~~~~~~~~ik~~~~~~-~~~~~~~ 230 (379)
||+|++.|+|+||++|+++.+++.++++||++++++|.++|.++++ ++....+++.++++|+++||+ ..|..
T Consensus 275 VDiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~-- 352 (655)
T 4am6_A 275 VNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVA-- 352 (655)
T ss_dssp EEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCC--
T ss_pred EcCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEEcccchh--
Confidence 9999999999999999999999999999999999999999999886 566778899999999999999 44431
Q ss_pred HHhcccCCCCcceEEccCC----ceeccCcccccccccccCCCCCCC---------------------------------
Q 017011 231 LAMSKESSQLDKQYELPDG----QVITIGAAQFKGPEVLFDPSRMGL--------------------------------- 273 (379)
Q Consensus 231 ~~~~~~~~~~~~~~~lp~~----~~i~i~~~~~~~~E~lF~p~~~~~--------------------------------- 273 (379)
.+. .......|++ ..+.++.|||++||+||+|++++.
T Consensus 353 ~q~------~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~~ 426 (655)
T 4am6_A 353 VQL------YNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLS 426 (655)
T ss_dssp SEE------EEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCHH
T ss_pred hhh------hcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccchh
Confidence 111 1111123443 367899999999999999986410
Q ss_pred ----------------------------------------------CCCCHHHHHHHHHHh-C---CHHHHHhhhcCeEe
Q 017011 274 ----------------------------------------------ETEGAHEILVRAIMR-S---DMDVRREMYGNVVL 303 (379)
Q Consensus 274 ----------------------------------------------~~~~l~~~i~~~i~~-~---~~~~r~~l~~nIil 303 (379)
...+|..+|.++|.. | +...-+++++||++
T Consensus 427 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nili 506 (655)
T 4am6_A 427 QFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILI 506 (655)
T ss_dssp HHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEEE
T ss_pred HHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEEE
Confidence 014899999999962 2 33344599999999
Q ss_pred ecCCCCCCCHHHHHHHHHhhcCCC--------------------------------------------------------
Q 017011 304 SGGTSLIPGLPDRLAKELCNLASP-------------------------------------------------------- 327 (379)
Q Consensus 304 ~GG~s~i~G~~~rl~~eL~~~~~~-------------------------------------------------------- 327 (379)
|||+|+||||...|.+.+...-|.
T Consensus 507 vGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 586 (655)
T 4am6_A 507 VGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQH 586 (655)
T ss_dssp ESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHHH
T ss_pred EcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhhh
Confidence 999999999998887777652221
Q ss_pred -----------CceEEEECCCC---CccceeehhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017011 328 -----------GVGVRVVAPPQ---RLHSVWIGGSILASLSTFQQMWITKEDYMESGPSVVHMKCF 379 (379)
Q Consensus 328 -----------~~~i~v~~~~~---~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 379 (379)
..+|+|..++. |.+.+|+|||++|+++.|+++||||+||+|+|+++|++||+
T Consensus 587 ~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 587 QNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp HHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred hhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence 01478888874 58999999999999999999999999999999999999984
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=5.3e-36 Score=282.36 Aligned_cols=308 Identities=16% Similarity=0.221 Sum_probs=239.6
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhcc----CCeeeeccccCCcccCHHH
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKR----GVLRLSHPVNRGMVRDWDA 85 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~----~~~~~~~p~~~g~i~~~~~ 85 (379)
.+|+||+||+++++|+.++. |...+||+++.+.+. .+.+++|++|.... ....+.+|+++|.+.+|+.
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTT-------GEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTV 75 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTT-------CCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCC-------CcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHH
Confidence 68999999999999998765 666789998875431 13368999997752 3456679999999999999
Q ss_pred HHHHHHHHHhhhccCC-CCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC-----ceEEEEeC
Q 017011 86 MERLWEHIFDKELRVT-IEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR-----TTGIVMDS 159 (379)
Q Consensus 86 ~~~~l~~~~~~~l~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 159 (379)
.+++|.+++.+..... ....++++++|+.++..+|+.+.+. ++.+|++.+.++++|.||+++++. .+.+|||+
T Consensus 76 ~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDi 154 (344)
T 1jce_A 76 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDI 154 (344)
T ss_dssp HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEe
Confidence 9999999994433322 4468899999999999999998885 699999999999999999999986 68999999
Q ss_pred CCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCC
Q 017011 160 GEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQ 239 (379)
Q Consensus 160 G~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
|+++|+++++..|.++ .....++||.++++.|.+++.++. .+ ..+.+.+|++|++++....+...+.
T Consensus 155 Gggttdvsv~~~~~~~--~~~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~l~~~~~~~~~~~-------- 221 (344)
T 1jce_A 155 GGGTTEVAVISLGSIV--TWESIRIAGDEMDEAIVQYVRETY-RV--AIGERTAERVKIEIGNVFPSKENDE-------- 221 (344)
T ss_dssp CSSCEEEEEEETTEEE--EEEEESCSHHHHHHHHHHHHHHHH-CE--ECCHHHHHHHHHHHCBCSCCHHHHH--------
T ss_pred CCCeEEEEEEEcCCEE--eeCCCCccChhHHHHHHHHHHHHh-Cc--ccCHHHHHHHHHHHhccCccccCCc--------
Confidence 9999999999999887 456789999999999999987541 11 2346779999999998765432211
Q ss_pred CcceEEcc-----CCc--eeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhh-cCeEeecCCCCCC
Q 017011 240 LDKQYELP-----DGQ--VITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMY-GNVVLSGGTSLIP 311 (379)
Q Consensus 240 ~~~~~~lp-----~~~--~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~-~nIil~GG~s~i~ 311 (379)
..+.++ +|. .+.+..+++. .+|.|.. ..+.+.|.++|.+++.+.+..++ ++|+||||+|++|
T Consensus 222 --~~~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p 291 (344)
T 1jce_A 222 --LETTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLR 291 (344)
T ss_dssp --CEEEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSB
T ss_pred --ceEEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccch
Confidence 123332 443 3444444442 2333321 24788889999999988888888 7999999999999
Q ss_pred CHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc-cccc
Q 017011 312 GLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL-STFQ 357 (379)
Q Consensus 312 G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l-~~~~ 357 (379)
||.++|++++.. ++..+.+|.+++|.||++++.. +.|+
T Consensus 292 ~l~~~l~~~~~~--------~v~~~~~p~~ava~Gaa~~a~~~~~~~ 330 (344)
T 1jce_A 292 GLDTLLQKETGI--------SVIRSEEPLTAVAKGAGMVLDKVNILK 330 (344)
T ss_dssp THHHHHHHHHSS--------CEEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHHHHHCC--------CccccCChHHHHHHHHHHHHhChHHHH
Confidence 999999999942 2344678999999999999984 5553
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.92 E-value=3.8e-26 Score=225.43 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=200.0
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCC--------CCceeEecCCCCccccCCCcceeecchhhhcc---C--Ceeeec---
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVV--------FPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKR---G--VLRLSH--- 73 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~--------~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~---~--~~~~~~--- 73 (379)
.+|.||+||++++++++.+..|.++ +||+++.. ....++|++|.... . ...+++
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg 72 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK----------NGERLVGEVAKRQAITNPNTIISIKRHMG 72 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES----------SSSEEESHHHHTTTTTCSSEEECGGGTTT
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC----------CCcEEECHHHHHhHHhCCCcHHHHHHhcC
Confidence 5899999999999999977767654 66666541 23478999887641 1 122222
Q ss_pred -ccc---CCcccCHHHHHHHHHHHHhhhccC------CCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchh
Q 017011 74 -PVN---RGMVRDWDAMERLWEHIFDKELRV------TIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAV 143 (379)
Q Consensus 74 -p~~---~g~i~~~~~~~~~l~~~~~~~l~~------~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~ 143 (379)
|+. +|.-.+ .++++.++| +.|.. ......+++++|++++..+|+.+.+.+ +.+|++.+.++++|.
T Consensus 73 ~p~~~~~~g~~~~---~~ei~a~~L-~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~-~~AGl~~~~li~Ep~ 147 (509)
T 2v7y_A 73 TDYKVEIEGKQYT---PQEISAIIL-QYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAG-RIAGLEVERIINEPT 147 (509)
T ss_dssp SCCCEEETTEEEC---HHHHHHHHH-HHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHH
T ss_pred CCcEEEECCEEEc---HHHHHHHHH-HHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecCHH
Confidence 555 554222 333444444 22211 123478999999999999999988765 889999999999999
Q ss_pred hhhhccCC-----ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhC-----CCcccch---
Q 017011 144 LSLYASGR-----TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD-----GYIFTTS--- 207 (379)
Q Consensus 144 ~a~~~~g~-----~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~--- 207 (379)
||+++++. .+.+|+|+|+++++++.+. +|.. +.......++||.++++.|.+++.++ +.++...
T Consensus 148 AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~ 227 (509)
T 2v7y_A 148 AAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMA 227 (509)
T ss_dssp HHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHH
T ss_pred HHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHH
Confidence 99999886 4799999999999999776 3543 33334457999999999999988653 3333211
Q ss_pred --hHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc------CC---ceeccCcccccccccccCCCCCCCCCC
Q 017011 208 --AEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP------DG---QVITIGAAQFKGPEVLFDPSRMGLETE 276 (379)
Q Consensus 208 --~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp------~~---~~i~i~~~~~~~~E~lF~p~~~~~~~~ 276 (379)
.-.+.+|++|++++... ...+.+| +| ..+.+..+.+. .+|.|-. .
T Consensus 228 ~~~l~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~~~~~~itr~~fe---~l~~~~~-----~ 283 (509)
T 2v7y_A 228 LQRLKDAAEKAKKELSGVT----------------QTQISLPFISANENGPLHLEMTLTRAKFE---ELSAHLV-----E 283 (509)
T ss_dssp HHHHHHHHHHHHHHTTTCS----------------EEEEEEEEEEEETTEEEEEEEEEEHHHHH---HHTHHHH-----H
T ss_pred HHHHHHHHHHHHHhcCCCC----------------cEEEEEeccccCCCCCeeEEEEEEHHHHH---HHHHHHH-----H
Confidence 12356788888776532 1223332 22 12234333332 2333211 1
Q ss_pred CHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 277 GAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 277 ~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.+.+.|.++|..+. +....+++|+|+||+|++|++.++|++.+.. .+..+.+|+.++|.||+++|..
T Consensus 284 ~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~aVa~Gaa~~a~~ 350 (509)
T 2v7y_A 284 RTMGPVRQALQDAG--LTPADIDKVILVGGSTRIPAVQEAIKRELGK--------EPHKGVNPDEVVAIGAAIQGGV 350 (509)
T ss_dssp TTHHHHHHHHHHHT--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS--------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CChhHCcEEEEECCcccChHHHHHHHHHhCC--------CcCcCCCchhhhHhhHHHHHHH
Confidence 36677777776654 2345678999999999999999999999843 2345678999999999999874
No 10
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.92 E-value=2.1e-24 Score=196.32 Aligned_cols=245 Identities=20% Similarity=0.219 Sum_probs=180.8
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcccCHHHHH
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRDWDAME 87 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~~~~~~ 87 (379)
+...++||+||.++|+.+..++. . .++. + ..-..|+++|.+.||+..+
T Consensus 27 ~~~~~gIDiGS~s~k~vi~~~~~-~-----~l~~-----------------~---------~~~~~~l~~g~i~d~~~~~ 74 (272)
T 3h1q_A 27 PPYKVGVDLGTADIVLVVTDQEG-I-----PVAG-----------------A---------LKWASVVKDGLVVDYIGAI 74 (272)
T ss_dssp SCCEEEEECCSSEEEEEEECTTC-C-----EEEE-----------------E---------EEECCCCBTTBCTTHHHHH
T ss_pred CCEEEEEEcccceEEEEEECCCC-c-----EEEE-----------------E---------eecccccCCCEEEcHHHHH
Confidence 34579999999999998843221 1 1111 1 0223588999999999999
Q ss_pred HHHHHHHhhhccC-CCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCceEEEEeCCCCcEEE
Q 017011 88 RLWEHIFDKELRV-TIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRTTGIVMDSGEGVTHV 166 (379)
Q Consensus 88 ~~l~~~~~~~l~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v 166 (379)
.+|++++...... ......++++.|..+....|+. ++.+++.+|++...++.++.|++++++..+++|||+|+++|++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~-~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~ 153 (272)
T 3h1q_A 75 QIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEA-CGHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGI 153 (272)
T ss_dssp HHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTH-HHHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHH-HHHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEE
Confidence 9999998543322 2234567888888776666655 5556799999999999999999999999999999999999999
Q ss_pred EEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEc
Q 017011 167 VPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYEL 246 (379)
Q Consensus 167 ~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (379)
+++.+|.++ .....++||.++++.+.+.+. .+.+.++++|++++. ..++..
T Consensus 154 ~~~~~g~~~--~~~~~~~Gg~~~~~~l~~~l~---------~~~~~ae~~k~~~~~-----~~~~~~------------- 204 (272)
T 3h1q_A 154 AVIEKGKIT--ATFDEPTGGTHLSLVLAGSYK---------IPFEEAETIKKDFSR-----HREIMR------------- 204 (272)
T ss_dssp EEEETTEEE--EECCBSCCHHHHHHHHHHHHT---------CCHHHHHHHHHSSTT-----HHHHHH-------------
T ss_pred EEEECCEEE--EEecCCCcHHHHHHHHHHHhC---------CCHHHHHHHHHhcCC-----HHHHHH-------------
Confidence 999999988 456789999999999998883 345678889887651 111110
Q ss_pred cCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCC
Q 017011 247 PDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLAS 326 (379)
Q Consensus 247 p~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~ 326 (379)
+.+.++ ..+.+.+.+.+.+++ ..++|+|+||+|++|||.++|+++|..
T Consensus 205 --------------~~~~~~---------~~i~~~i~~~l~~~~------~~~~ivL~GG~a~~~~l~~~l~~~l~~--- 252 (272)
T 3h1q_A 205 --------------VVRPVI---------EKMALIVKEVIKNYD------QTLPVYVVGGTAYLTGFSEEFSRFLGK--- 252 (272)
T ss_dssp --------------HHHHHH---------HHHHHHHHHHTTTSC------SSCCEEEESGGGGSTTHHHHHHHHHSS---
T ss_pred --------------HHHHHH---------HHHHHHHHHHHHhcC------CCCEEEEECCccchhhHHHHHHHHhCC---
Confidence 000111 125666666776665 245999999999999999999999943
Q ss_pred CCceEEEECCCCCccceeehhhhhh
Q 017011 327 PGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 327 ~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
++..+.+|++++|.||+++|
T Consensus 253 -----~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 253 -----EVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp -----CCBCCSSGGGHHHHHHHTTC
T ss_pred -----CccccCChHHHHHHHHHhcC
Confidence 34456789999999999875
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.91 E-value=6e-24 Score=202.87 Aligned_cols=304 Identities=17% Similarity=0.193 Sum_probs=195.8
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCC--------CCceeEecCCCCccccCCCcceeecchhhhcc----C--Ceeee---
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVV--------FPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKR----G--VLRLS--- 72 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~--------~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~----~--~~~~~--- 72 (379)
..|-||+||+++.+++..+..|.++ +||+++...+ ...++|.+|.... + ...++
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~~~~~~~~~k~~l 73 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI 73 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTT---------SCEEESHHHHTTSTTCGGGEEECGGGTT
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECC---------CCEEECHHHHHhhhhCccceeehhHHhh
Confidence 4789999999999998855444432 4565554221 2356777765420 0 00011
Q ss_pred ---------------cccc-------------CCc-ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhH
Q 017011 73 ---------------HPVN-------------RGM-VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINR 120 (379)
Q Consensus 73 ---------------~p~~-------------~g~-i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~ 120 (379)
+|+. .|. +...+....+++++.. +.++ .....+++++|..++..+|
T Consensus 74 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r 151 (383)
T 1dkg_D 74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR 151 (383)
T ss_dssp TCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHH
T ss_pred CCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence 1322 232 2223444555555542 1232 2346799999999999999
Q ss_pred HHHHHHhhccCCCCeEeeecchhhhhhccCCc------eEEEEeCCCCcEEEEEeecC------ee-cccceEEecccHH
Q 017011 121 EKMVEIMFEGFEIPATYVAIQAVLSLYASGRT------TGIVMDSGEGVTHVVPIYEG------YA-LPHAIQRLELAGK 187 (379)
Q Consensus 121 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~pv~dG------~~-~~~~~~~~~~GG~ 187 (379)
+.+.+.+ +.+|++.+.++++|.||+++++.. +.+|||+|+++|+++.+..+ .. +.......++||.
T Consensus 152 ~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 230 (383)
T 1dkg_D 152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (383)
T ss_dssp HHHHHHH-HHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHH
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHH
Confidence 9988764 889999999999999999987653 78999999999999988754 22 1122345699999
Q ss_pred HHHHHHHHHHhhC-----CCcccch-----hHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCC-c--eecc
Q 017011 188 DLTDYLTTNLTKD-----GYIFTTS-----AEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDG-Q--VITI 254 (379)
Q Consensus 188 ~i~~~l~~~l~~~-----~~~~~~~-----~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~-~--~i~i 254 (379)
++++.|.+++.++ +.++... .-.+.+|++|++++..... . -..+..+..++| . .+.+
T Consensus 231 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~------~----i~i~~~~~~~~G~~~~~~~i 300 (383)
T 1dkg_D 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT------D----VNLPYITADATGPKHMNIKV 300 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE------E----EEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce------E----EEEecccccCCCCeeEEEEE
Confidence 9999999988654 3333211 1235688888887753210 0 000111222333 1 2344
Q ss_pred CcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEE
Q 017011 255 GAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVV 334 (379)
Q Consensus 255 ~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~ 334 (379)
..+.+. .+|.|.. ..+.+.|.++|.++. +....+++|+|+||+|++|++.++|++.+.. ++.
T Consensus 301 t~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~--~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--------~v~ 362 (383)
T 1dkg_D 301 TRAKLE---SLVEDLV-----NRSIELLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPR 362 (383)
T ss_dssp EHHHHH---HHSHHHH-----HHHHHHHHHHHHTTT--CCTTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCB
T ss_pred eHHHHH---HHHHHHH-----HHHHHHHHHHHHHcC--CCHhhCCEEEEecCccccHHHHHHHHHHhCC--------CCC
Confidence 443332 2333311 136677778887775 2334568999999999999999999999952 244
Q ss_pred CCCCCccceeehhhhhhcc
Q 017011 335 APPQRLHSVWIGGSILASL 353 (379)
Q Consensus 335 ~~~~~~~~~w~Gasi~a~l 353 (379)
.+.+|++++|.||+++|.+
T Consensus 363 ~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 363 KDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp CSSCTTTHHHHHHHHHTTT
T ss_pred CCcChHHHHHHHHHHHHHh
Confidence 5678999999999999875
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.90 E-value=1.1e-23 Score=201.72 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=186.2
Q ss_pred CCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc--cCCeeeeccccCCc-------
Q 017011 9 FRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK--RGVLRLSHPVNRGM------- 79 (379)
Q Consensus 9 ~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~--~~~~~~~~p~~~g~------- 79 (379)
..+|.||+||+++++++..+..|.. +++..+....++. .+......++|++|... ....+..+.+++..
T Consensus 18 ~~viGID~GTt~s~va~~~~g~~~i-i~~~~g~~~~PS~-v~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 95 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMKNGKTEI-LANEQGNRITPSY-VAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDR 95 (394)
T ss_dssp CSCEEEEECSSEEEEEEECSSCEEE-CCCTTSCSSEECC-EEECSSCEEESHHHHHTGGGCGGGEECCGGGTTTCCTTCH
T ss_pred CCEEEEEeCcCcEEEEEEECCeeEE-EECCCCCEeeceE-EEEeCCcEEecHHHHHhhHhCcccCHHHHHHHhCCCCCcH
Confidence 4679999999999999997766653 3222222111111 11122357789887653 11111111121111
Q ss_pred --------------------------------ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHH
Q 017011 80 --------------------------------VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMV 124 (379)
Q Consensus 80 --------------------------------i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~ 124 (379)
+...+....+++++.. +.++ .....+++++|+.++..+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r~~~~ 173 (394)
T 3qfu_A 96 SVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLG--TKVTHAVVTVPAYFNDAQRQATK 173 (394)
T ss_dssp HHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHhcC--CCcceEEEEECCCCCHHHHHHHH
Confidence 1112333444444431 1222 23468999999999999999887
Q ss_pred HHhhccCCCCeEeeecchhhhhhccCCc------eEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHH
Q 017011 125 EIMFEGFEIPATYVAIQAVLSLYASGRT------TGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTT 195 (379)
Q Consensus 125 ~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~ 195 (379)
+.+ +.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. ++.. +.......++||.++++.|.+
T Consensus 174 ~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~ 252 (394)
T 3qfu_A 174 DAG-TIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVR 252 (394)
T ss_dssp HHH-HHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHH-HHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHHHHHHHHH
Confidence 776 889999999999999999988653 459999999999888775 3332 222234479999999999998
Q ss_pred HHhhC-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc---CCceeccCccccccc
Q 017011 196 NLTKD-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP---DGQVITIGAAQFKGP 262 (379)
Q Consensus 196 ~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp---~~~~i~i~~~~~~~~ 262 (379)
++..+ +.+..... -.+.++.+|+.+... ....+.++ ++..+.+.-.|....
T Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~~~~~~~~~~~~~~~~~~i~r~~~~ 316 (394)
T 3qfu_A 253 QLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQ----------------MSTRIEIDSFVDGIDLSETLTRAKFE 316 (394)
T ss_dssp HHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTC----------------SEEEEEEEEEETTEEEEEEEEHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccC----------------CcEEEEEEeccCCceeEEEEEHHHHH
Confidence 88532 11111110 123455555554321 11222222 332222221221111
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccc
Q 017011 263 EVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHS 342 (379)
Q Consensus 263 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~ 342 (379)
-++.|. ...+.+.|.+.|.++..+ ...+++|+|+||+|++|++.++|++.+.. .++..+.+|+.+
T Consensus 317 -~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~-------~~v~~~~~p~~a 381 (394)
T 3qfu_A 317 -ELNLDL-----FKKTLKPVEKVLQDSGLE--KKDVDDIVLVGGSTRIPKVQQLLESYFDG-------KKASKGINPDEA 381 (394)
T ss_dssp -HHHHHH-----HHHTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHTTT-------CCCBCCSCTTTH
T ss_pred -HHHHHH-----HHHHHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcCC-------CCCCCCcCHHHH
Confidence 122220 012555666666655432 45668999999999999999999998832 234456789999
Q ss_pred eeehhhhhhcc
Q 017011 343 VWIGGSILASL 353 (379)
Q Consensus 343 ~w~Gasi~a~l 353 (379)
+|.||+++|.+
T Consensus 382 va~Gaa~~a~~ 392 (394)
T 3qfu_A 382 VAYGAAVQAGV 392 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.88 E-value=1.2e-22 Score=195.26 Aligned_cols=311 Identities=14% Similarity=0.153 Sum_probs=186.5
Q ss_pred CCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhc--cCCeeeeccccCCc------
Q 017011 8 EFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK--RGVLRLSHPVNRGM------ 79 (379)
Q Consensus 8 ~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~--~~~~~~~~p~~~g~------ 79 (379)
...+|.||+||+++++++..+..|. ++++..+.++.++. ........++|.+|... ....+..+.+++..
T Consensus 22 ~~~viGID~GTt~s~va~~~~g~~~-ii~~~~g~~~~PS~-v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~ 99 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGKVE-IIANDQGNRTTPSY-VAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED 99 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETTEEE-ECCCTTSCSSEECC-EEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred cCCEEEEEcCCccEEEEEEECCeeE-EEECCCCCcccceE-EEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence 3468999999999999998766554 33333222222221 11122357889888653 11111222222211
Q ss_pred ---------------------------------ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHH
Q 017011 80 ---------------------------------VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKM 123 (379)
Q Consensus 80 ---------------------------------i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l 123 (379)
+...+....+++++.. ..++ .....+++++|+.++..+|+.+
T Consensus 100 ~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~ 177 (404)
T 3i33_A 100 ATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLG--GKVHSAVITVPAYFNDSQRQAT 177 (404)
T ss_dssp HHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEEEECTTCCHHHHHHH
T ss_pred HHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhc--cCCCcEEEEECCCCCHHHHHHH
Confidence 1112333444444431 1222 2346799999999999999987
Q ss_pred HHHhhccCCCCeEeeecchhhhhhccCCc---------eEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHH
Q 017011 124 VEIMFEGFEIPATYVAIQAVLSLYASGRT---------TGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTD 191 (379)
Q Consensus 124 ~~~lfe~~~~~~v~~~~~~~~a~~~~g~~---------~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~ 191 (379)
.+. ++.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. +|.. +.......++||.++++
T Consensus 178 ~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 256 (404)
T 3i33_A 178 KDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDN 256 (404)
T ss_dssp HHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHH
T ss_pred HHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHH
Confidence 776 5889999999999999999988643 459999999999998774 4332 22334457999999999
Q ss_pred HHHHHHhhC-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc---CCceeccCccc
Q 017011 192 YLTTNLTKD-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP---DGQVITIGAAQ 258 (379)
Q Consensus 192 ~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp---~~~~i~i~~~~ 258 (379)
.|.+++..+ +..+.... -...+|.+|+.+... ....+.++ ++..+.+.-.|
T Consensus 257 ~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~~~~~~~~~~~g~~~~~~i~r 320 (404)
T 3i33_A 257 RMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSS----------------TQASIEIDSLYEGVDFYTSITR 320 (404)
T ss_dssp HHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTS----------------SEEEEEEEEEETTEEEEEEEEH
T ss_pred HHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcC----------------cceEEEEeeccCCceeEEEEcH
Confidence 999888432 22221110 113455666654321 11122222 33222222122
Q ss_pred ccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCC
Q 017011 259 FKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQ 338 (379)
Q Consensus 259 ~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~ 338 (379)
.... -++.|. ...+.+.|.+.|..... ....++.|+|+||+|++|++.++|++.+... ++..+.+
T Consensus 321 ~~~~-~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~-------~v~~~~~ 385 (404)
T 3i33_A 321 ARFE-ELNADL-----FRGTLEPVEKALRDAKL--DKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSIN 385 (404)
T ss_dssp HHHH-HHTHHH-----HHHTHHHHHHHHHHHTC--CGGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCSSC
T ss_pred HHHH-HHHHHH-----HHHHHHHHHHHHHHcCC--CHhhCCEEEEECCccccHHHHHHHHHHcCCC-------CCCCCcC
Confidence 1111 122220 01244555666655322 2345688999999999999999999888321 3445678
Q ss_pred Cccceeehhhhhhccc
Q 017011 339 RLHSVWIGGSILASLS 354 (379)
Q Consensus 339 ~~~~~w~Gasi~a~l~ 354 (379)
|+.+++.||+++|.+.
T Consensus 386 p~~ava~Gaa~~a~~l 401 (404)
T 3i33_A 386 PDEAVAYGAAVQAAIL 401 (404)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 14
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.84 E-value=1.2e-20 Score=189.63 Aligned_cols=298 Identities=18% Similarity=0.220 Sum_probs=189.4
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCC--------CCceeEecCCCCccccCCCcceeecchhhhc------cCCeeee---
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVV--------FPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK------RGVLRLS--- 72 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~--------~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~------~~~~~~~--- 72 (379)
.+|-||+||+++.+++..+..|.++ .||+++... ....++|.+|... +..+.++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~---------~~~~~vG~~A~~~~~~~p~~t~~~~Kr~i 73 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ---------DGETLVGQPAKRQAVTNPQNTLFAIKRLI 73 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECT---------TSCEEESHHHHTTTTTCGGGEEECGGGTT
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEEC---------CCcEEECHHHHHHhhhCCCCEeehhhHhh
Confidence 4799999999999999855444422 455554321 1346788777542 0001111
Q ss_pred ---------------cccc-------------CCc-ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhH
Q 017011 73 ---------------HPVN-------------RGM-VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINR 120 (379)
Q Consensus 73 ---------------~p~~-------------~g~-i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~ 120 (379)
+|+. .|. +...+....+++++.. ..++ .....++++.|.+++..+|
T Consensus 74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~v~~~VitVPa~f~d~qr 151 (605)
T 2kho_A 74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR 151 (605)
T ss_dssp TCBSSSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHC--SCCCEEEEEECTTCCHHHH
T ss_pred CCCCCcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCcEEEEEECCCCCHHHH
Confidence 1322 222 1223334444555432 2233 2346799999999999999
Q ss_pred HHHHHHhhccCCCCeEeeecchhhhhhccCCc------eEEEEeCCCCcEEEEEeec------Cee-cccceEEecccHH
Q 017011 121 EKMVEIMFEGFEIPATYVAIQAVLSLYASGRT------TGIVMDSGEGVTHVVPIYE------GYA-LPHAIQRLELAGK 187 (379)
Q Consensus 121 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~pv~d------G~~-~~~~~~~~~~GG~ 187 (379)
+.+.+.+ +..|++.+.++++|.||+++++.. +.+|+|+|+++++|+.+.- |.. +..+....++||.
T Consensus 152 ~a~~~A~-~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~ 230 (605)
T 2kho_A 152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp HHHHHHH-HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG
T ss_pred HHHHHHH-HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH
Confidence 9987765 788999999999999999988643 5799999999999998863 432 2223345689999
Q ss_pred HHHHHHHHHHhhC-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc------CC-c
Q 017011 188 DLTDYLTTNLTKD-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP------DG-Q 250 (379)
Q Consensus 188 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp------~~-~ 250 (379)
++++.|.+++..+ +.++.... -...+|.+|+.++... ...+.+| +| .
T Consensus 231 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~ 294 (605)
T 2kho_A 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ----------------QTDVNLPYITADATGPK 294 (605)
T ss_dssp GTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS----------------EEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEecccccCCCCce
Confidence 9999999888543 33332111 1355777777765421 1122222 12 1
Q ss_pred --eeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCC
Q 017011 251 --VITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPG 328 (379)
Q Consensus 251 --~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~ 328 (379)
.+.+..+.| |-++.|-. ..+.+.|.++|.... +...-++.|+||||+|++|++.++|++.+..
T Consensus 295 ~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~~~fg~----- 359 (605)
T 2kho_A 295 HMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK----- 359 (605)
T ss_dssp EEEEEEEHHHH---HTTCCSTT-----GGGTSHHHHHHHTTT--CCTTTCSEEEEESGGGGSHHHHHHHHHHHSS-----
T ss_pred EEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcC--CChhhCceEEEECCcccChHHHHHHHHhcCC-----
Confidence 123333332 12333311 236667777777664 2234567999999999999999999998842
Q ss_pred ceEEEECCCCCccceeehhhhhhcc
Q 017011 329 VGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 329 ~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.+..+.+|+.+++.||+++|..
T Consensus 360 ---~~~~~~npd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 360 ---EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp ---CCBCSSCTTTHHHHHHHHHHTT
T ss_pred ---CcCcCCCcchHHHHHHHHHHHH
Confidence 2345678999999999999974
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.83 E-value=2.1e-20 Score=186.01 Aligned_cols=305 Identities=15% Similarity=0.187 Sum_probs=186.5
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhcc---C---Ceeeecccc-------
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKR---G---VLRLSHPVN------- 76 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~---~---~~~~~~p~~------- 76 (379)
.+|-||+||+++.+++..+..|. ++++..+....+++ ........++|.+|.... . ...+++-+.
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~-ii~n~~g~~~~PS~-V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 82 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHGKVE-IIANDQGNRTTPSY-VAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 82 (554)
T ss_dssp CCEEEEECSSEEEEEEECSSSEE-ECCCTTSCSEEECC-EEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSH
T ss_pred CEEEEEeCcccEEEEEEECCEEE-EEECCCCCeecceE-EEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHH
Confidence 47999999999999998654443 23322221111111 111223467898876431 0 011111110
Q ss_pred ---------------CCc-------------ccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHH
Q 017011 77 ---------------RGM-------------VRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVE 125 (379)
Q Consensus 77 ---------------~g~-------------i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~ 125 (379)
+|. ..-.+....+++++.. ..++. .-..++++.|..++..+|+.+.+
T Consensus 83 v~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~--~v~~~VitVPa~f~~~qr~a~~~ 160 (554)
T 1yuw_A 83 VQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGK--TVTNAVVTVPAYFNDSQRQATKD 160 (554)
T ss_dssp HHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSS--CCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH
Confidence 110 1113344445555431 23332 23679999999999999999877
Q ss_pred HhhccCCCCeEeeecchhhhhhccCC-------ceEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHH
Q 017011 126 IMFEGFEIPATYVAIQAVLSLYASGR-------TTGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTT 195 (379)
Q Consensus 126 ~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~ 195 (379)
.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|.. +.......++||.++++.|.+
T Consensus 161 A~-~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~ 239 (554)
T 1yuw_A 161 AG-TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVN 239 (554)
T ss_dssp HH-HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HH-HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHH
Confidence 54 88999999999999999998863 4689999999999999886 6754 333445679999999999998
Q ss_pred HHhh-----CCCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc---CCce--eccCcccc-
Q 017011 196 NLTK-----DGYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP---DGQV--ITIGAAQF- 259 (379)
Q Consensus 196 ~l~~-----~~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp---~~~~--i~i~~~~~- 259 (379)
++.. .+.++.... -...+|.+|+.++... ...+.++ +|.. +.+..+.+
T Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~----------------~~~i~i~~~~~g~~~~~~ltr~~~e 303 (554)
T 1yuw_A 240 HFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST----------------QASIEIDSLYEGIDFYTSITRARFE 303 (554)
T ss_dssp HHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS----------------EEEEEETTCSSSCCEEEEEEHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc----------------eEEEEEeeccCCceEEEEEEHHHHH
Confidence 8853 122322111 1245677777765321 1223333 2221 22222222
Q ss_pred cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCC
Q 017011 260 KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQR 339 (379)
Q Consensus 260 ~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~ 339 (379)
...+.+|. .+.+.|.+++.... +...-++.|+|+||+|++|++.++|++.+... ++..+.+|
T Consensus 304 ~l~~~~~~---------~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~-------~v~~~~np 365 (554)
T 1yuw_A 304 ELNADLFR---------GTLDPVEKALRDAK--LDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------ELNKSINP 365 (554)
T ss_dssp HHTHHHHH---------HTTHHHHHHHHHTT--CCGGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------CCBCCSCT
T ss_pred HHHHHHHH---------HHHHHHHHHHHHcC--CChhhCcEEEEECCcccChHHHHHHHHHcCCC-------ccccCCCc
Confidence 11122221 13345555665542 22345689999999999999999999888432 23456789
Q ss_pred ccceeehhhhhhcc
Q 017011 340 LHSVWIGGSILASL 353 (379)
Q Consensus 340 ~~~~w~Gasi~a~l 353 (379)
+.+++.||+++|..
T Consensus 366 ~~aVA~Gaa~~a~~ 379 (554)
T 1yuw_A 366 DEAVAYGAAVQAAI 379 (554)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999863
No 16
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.81 E-value=6.5e-20 Score=176.39 Aligned_cols=239 Identities=15% Similarity=0.181 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCCc--------
Q 017011 84 DAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGRT-------- 152 (379)
Q Consensus 84 ~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-------- 152 (379)
+....+++++.. ..++ .....++++.|..++..+|+.+.+.+ +..|++.+.++++|.||+++++..
T Consensus 129 ev~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~ 205 (409)
T 4gni_A 129 EIATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDK 205 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCE
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCC
Confidence 445556666542 2232 34567999999999999999877665 788999999999999999998764
Q ss_pred eEEEEeCCCCcEEEEEee--cCee-cccceEEecccHHHHHHHHHHHHhhC-----C--Ccccchh-----HHHHHHHHH
Q 017011 153 TGIVMDSGEGVTHVVPIY--EGYA-LPHAIQRLELAGKDLTDYLTTNLTKD-----G--YIFTTSA-----EREIVRDIK 217 (379)
Q Consensus 153 ~~lVVDiG~~~t~v~pv~--dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~--~~~~~~~-----~~~~~~~ik 217 (379)
+.+|+|+|+++|+++.+. +|.. +.......++||.++++.|.+++..+ + .+..... -...+|.+|
T Consensus 206 ~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K 285 (409)
T 4gni_A 206 IIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTK 285 (409)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Confidence 589999999999998753 3322 22222357999999999999988642 1 1111100 012456666
Q ss_pred HHcccCccCHHHHHHhcccCCCCcceEEcc---CCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHH
Q 017011 218 ERLSYVAMDFQKELAMSKESSQLDKQYELP---DGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVR 294 (379)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp---~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r 294 (379)
+.+... ....+.++ ++....+.-.|-... -++.|- ...+.+.|.+.|.+.. ..
T Consensus 286 ~~ls~~----------------~~~~i~i~~~~~~~~~~~~itr~~~~-~~~~~~-----~~~i~~~i~~~l~~~~--~~ 341 (409)
T 4gni_A 286 RALSRS----------------TNASFSVESLIDGLDFASTINRLRYE-TIARTV-----FEGFNRLVESAVKKAG--LD 341 (409)
T ss_dssp HHHHHS----------------SEEEEEEEEEETTEEEEEEEEHHHHH-HHTHHH-----HHHHHHHHHHHHHHTT--CC
T ss_pred HhCCCC----------------CceEEEeecccCCcceEEEeeHHHHH-HHHHHH-----HHHHHHHHHHHHHHcC--CC
Confidence 654311 11122222 232222221221111 122220 0125555556665442 22
Q ss_pred HhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEE------ECCCCCccceeehhhhhhcccc
Q 017011 295 REMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRV------VAPPQRLHSVWIGGSILASLST 355 (379)
Q Consensus 295 ~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v------~~~~~~~~~~w~Gasi~a~l~~ 355 (379)
...++.|+||||+|++|++.++|++.+.. +++| ....+|+.++..||++++....
T Consensus 342 ~~~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~ 402 (409)
T 4gni_A 342 PLDVDEVIMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQASLIQ 402 (409)
T ss_dssp GGGCCEEEEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHCCEEEEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHhhhhh
Confidence 34568899999999999999999988743 2344 3456899999999999998764
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.80 E-value=1.7e-19 Score=182.63 Aligned_cols=214 Identities=12% Similarity=0.164 Sum_probs=146.0
Q ss_pred CCcEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhccCC------------ceEEEEeCCCCcEEEEEee-
Q 017011 104 EHPVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYASGR------------TTGIVMDSGEGVTHVVPIY- 170 (379)
Q Consensus 104 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~pv~- 170 (379)
-..+++++|.+++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+.
T Consensus 138 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~ 216 (675)
T 3d2f_A 138 ITDVCIAVPPWYTEEQRYNIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF 216 (675)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEE
T ss_pred cceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEe
Confidence 367999999999999999988765 78899999999999999987642 3689999999999999886
Q ss_pred -cCee-cccceEEecccHHHHHHHHHHHHhh-----CCCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCC
Q 017011 171 -EGYA-LPHAIQRLELAGKDLTDYLTTNLTK-----DGYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESS 238 (379)
Q Consensus 171 -dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 238 (379)
+|.. +..+....++||.++++.|.+++.. .+.++.... -...+|.+|+.++...
T Consensus 217 ~~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~-------------- 282 (675)
T 3d2f_A 217 KKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT-------------- 282 (675)
T ss_dssp ETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCS--------------
T ss_pred cCCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCC--------------
Confidence 6654 3333445799999999999998853 122221110 1355677777664311
Q ss_pred CCcceEEcc---CCc--eeccCcccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCC
Q 017011 239 QLDKQYELP---DGQ--VITIGAAQF-KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPG 312 (379)
Q Consensus 239 ~~~~~~~lp---~~~--~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G 312 (379)
...+.++ ++. .+.+..+.| .+.+.++. .+...|.++|.... +...-++.|+||||+|++|+
T Consensus 283 --~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~---------~i~~~i~~~L~~a~--l~~~~I~~VvLvGGssriP~ 349 (675)
T 3d2f_A 283 --NAPFSVESVMNDVDVSSQLSREELEELVKPLLE---------RVTEPVTKALAQAK--LSAEEVDFVEIIGGTTRIPT 349 (675)
T ss_dssp --EEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHT---------TTTHHHHHHHHHHT--CCGGGCCEEEEESGGGGSHH
T ss_pred --ceEEEEeeeccCceEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHhC--CChhhCcEEEEECCCccChH
Confidence 1122332 121 223333222 12222332 25555666665442 11224579999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 313 LPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 313 ~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
+.++|++.+.. .+..+.+|+.+++.||+++|..
T Consensus 350 v~~~l~~~fg~--------~~~~~~nPdeaVA~GAa~~a~~ 382 (675)
T 3d2f_A 350 LKQSISEAFGK--------PLSTTLNQDEAIAKGAAFICAI 382 (675)
T ss_dssp HHHHHHHHHTS--------CEECCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--------CccccCCcchHHHHHHHHHHHH
Confidence 99999988842 2445678999999999998873
No 18
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.77 E-value=4.1e-18 Score=171.10 Aligned_cols=297 Identities=18% Similarity=0.201 Sum_probs=179.3
Q ss_pred CcEEEeCCCceEEEEecCCCCCC--------CCCCceeEecCCCCccccCCCcceeecchhhhc---c---CCeeeeccc
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPC--------VVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAK---R---GVLRLSHPV 75 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~---~---~~~~~~~p~ 75 (379)
.+|-||+||+++.+++.....|. ..+||+++... ....++|.+|... + ..+.+++-+
T Consensus 3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krll 73 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ---------DGCTLVGQPAKRQAVTNPQNTLFAIKRLI 73 (605)
T ss_dssp CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECT---------TSCEEESHHHHHTTTTCGGGEECCGGGTT
T ss_pred cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeC---------CCcEEecHHHHHHHHhCCCcEehhhHHhh
Confidence 57999999999999998544443 23344444321 2346788877643 1 111122111
Q ss_pred c-------------------------------CC-cccCHHHHHHHHHHHHh---hhccCCCCCCcEEEEcCCCCChhhH
Q 017011 76 N-------------------------------RG-MVRDWDAMERLWEHIFD---KELRVTIEEHPVLLTEPPLNPKINR 120 (379)
Q Consensus 76 ~-------------------------------~g-~i~~~~~~~~~l~~~~~---~~l~~~~~~~~vvl~~~~~~~~~~~ 120 (379)
. .| .....+....+|+++.. ..++. .-..++++.|..++..+|
T Consensus 74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr 151 (605)
T 4b9q_A 74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQR 151 (605)
T ss_dssp TCBTTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHH
T ss_pred CCCCCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 1 11 12223444455555442 23333 346799999999999999
Q ss_pred HHHHHHhhccCCCCeEeeecchhhhhhccCC------ceEEEEeCCCCcEEEEEeecCe------e-cccceEEecccHH
Q 017011 121 EKMVEIMFEGFEIPATYVAIQAVLSLYASGR------TTGIVMDSGEGVTHVVPIYEGY------A-LPHAIQRLELAGK 187 (379)
Q Consensus 121 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~pv~dG~------~-~~~~~~~~~~GG~ 187 (379)
+.+.+.+ +..|++.+.++++|.||++++|. .+-+|+|+|+++++++.+.-+. . +........+||.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~ 230 (605)
T 4b9q_A 152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp HHHHHHH-HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred HHHHHHH-HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence 8876665 78899999999999999998863 3679999999999999876432 1 2223334689999
Q ss_pred HHHHHHHHHHhhC-----CCcccchh-----HHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEcc----C--C-c
Q 017011 188 DLTDYLTTNLTKD-----GYIFTTSA-----EREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELP----D--G-Q 250 (379)
Q Consensus 188 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp----~--~-~ 250 (379)
++++.|.+++..+ +.+..... -...+|.+|+.+.... ...+.+| + + .
T Consensus 231 d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~----------------~~~i~~~~~~~~~~g~~ 294 (605)
T 4b9q_A 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ----------------QTDVNLPYITADATGPK 294 (605)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCS----------------EEEEEEEEEEECSSSEE
T ss_pred HHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCC----------------CeEEEEeeeccCCCCCe
Confidence 9999999888642 22221111 1344666666654321 1112221 1 1 1
Q ss_pred --eeccCcccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCC
Q 017011 251 --VITIGAAQF-KGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASP 327 (379)
Q Consensus 251 --~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~ 327 (379)
.+.+..+.+ .+.+.++. .+.+.|.+++.... ....-++.|+||||+|++|++.++|++.+..
T Consensus 295 ~~~~~itr~~~e~l~~~~~~---------~i~~~v~~~L~~a~--~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~---- 359 (605)
T 4b9q_A 295 HMNIKVTRAKLESLVEDLVN---------RSIEPLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK---- 359 (605)
T ss_dssp EEEEEEEHHHHHHHHHHHHH---------HTTHHHHHHHHHTT--CCGGGCSEEEEESGGGGSHHHHHHHHHHHTS----
T ss_pred eEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcC--CCHHHCcEEEEeCCccCchHHHHHHHHHhcc----
Confidence 122222221 11111111 12333444443331 1123457899999999999999999988842
Q ss_pred CceEEEECCCCCccceeehhhhhhcc
Q 017011 328 GVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 328 ~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.+..+.+|+.++..||+++|..
T Consensus 360 ----~~~~~~nPdeaVA~GAai~a~~ 381 (605)
T 4b9q_A 360 ----EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp ----CCCSSSCTTTHHHHHHHHHHHH
T ss_pred ----CcCCCcChhHHHHHhHHHHHHH
Confidence 2334568899999999999874
No 19
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.74 E-value=2.3e-17 Score=156.81 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=109.3
Q ss_pred HHHHHHhhccCCCCeEeeecchhhhhhccC-------CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHH
Q 017011 121 EKMVEIMFEGFEIPATYVAIQAVLSLYASG-------RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYL 193 (379)
Q Consensus 121 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l 193 (379)
+.+.++ ++..|++...++.+|+|++.+++ ..+.+|||+|+++|+++.+.+|.++ .....++||.++++.+
T Consensus 154 ~~~~~~-~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~--~~~~~~~GG~~i~~~i 230 (377)
T 2ych_A 154 AGVLEA-LRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPL--AVRVLTLSGKDFTEAI 230 (377)
T ss_dssp HHHHHH-HHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEE--EEEEESCSHHHHHHHH
T ss_pred HHHHHH-HHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEE--EEEeeechHHHHHHHH
Confidence 454444 48899999999999999998864 2356999999999999999999887 5678999999999999
Q ss_pred HHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccc-cccccccCCCCCC
Q 017011 194 TTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQF-KGPEVLFDPSRMG 272 (379)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~-~~~E~lF~p~~~~ 272 (379)
.+.+ ..+.+.+|++|+++++...+...+. ..+.+++ ..+.++.+.+ .+.+.++
T Consensus 231 ~~~~---------~~~~~~aE~~K~~~~~~~~~~~~~~----------~~i~~~~-~~~~i~~~~~~~~i~~~~------ 284 (377)
T 2ych_A 231 ARSF---------NLDLLAAEEVKRTYGMATLPTEDEE----------LLLDFDA-ERERYSPGRIYDAIRPVL------ 284 (377)
T ss_dssp HHHT---------TCCHHHHHHHHHHTC------------------------------------CHHHHHHHHH------
T ss_pred HHHh---------CCCHHHHHHHHhhcccccccccccc----------ccccccc-ccccCCHHHHHHHHHHHH------
Confidence 8754 1235679999999886543211110 0112221 1122222111 1111111
Q ss_pred CCCCCHHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHh
Q 017011 273 LETEGAHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELC 322 (379)
Q Consensus 273 ~~~~~l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~ 322 (379)
..+.+.|.+++..++...+....++|+||||+|++||+.+++++.+.
T Consensus 285 ---~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 285 ---VELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp ---HHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 12555666666655444556678899999999999999999999995
No 20
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.71 E-value=1.9e-17 Score=155.26 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=127.7
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCcccc------C--------CCcceeecchhhhccCCeeeeccc
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIG------I--------GQKDMYFGDEAQAKRGVLRLSHPV 75 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~------~--------~~~~~~vg~~a~~~~~~~~~~~p~ 75 (379)
-.|.||+|+.++|+-. ++ .-...+||.++.....+...+ . ..+.+.+|++|. +|+
T Consensus 22 ~~igiDlG~~~tkv~~-~~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~---------~~l 90 (346)
T 2fsj_A 22 VVVGLDVGYGDTKVIG-VD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR---------VPQ 90 (346)
T ss_dssp EEEEEEECSSEEEEEC-GG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB---------CCS
T ss_pred EEEEEecCCcceeEEe-cC-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee---------ccc
Confidence 4689999999999864 33 224467888876544221000 0 124566886654 799
Q ss_pred cCCcccCHHHHHHHHHHHHhhhc-cCCCCCCcEE--EEcCCCCChhhHHHHHHHhhcc-------------CCCCeEeee
Q 017011 76 NRGMVRDWDAMERLWEHIFDKEL-RVTIEEHPVL--LTEPPLNPKINREKMVEIMFEG-------------FEIPATYVA 139 (379)
Q Consensus 76 ~~g~i~~~~~~~~~l~~~~~~~l-~~~~~~~~vv--l~~~~~~~~~~~~~l~~~lfe~-------------~~~~~v~~~ 139 (379)
+.+.+.+ +..+.++.+.+.+.. ........++ ++.|......+|+++.+.+... +++..+.++
T Consensus 91 ~~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li 169 (346)
T 2fsj_A 91 GDGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMR 169 (346)
T ss_dssp STTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEE
T ss_pred CCCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEE
Confidence 9999988 777778888775443 1112345689 9999988888898888775432 135679999
Q ss_pred cchhhhhhcc--C-----C-ceEEEEeCCCCcEEEEEee--cCeecccceEEecccHHHHHHHHHHHHhh
Q 017011 140 IQAVLSLYAS--G-----R-TTGIVMDSGEGVTHVVPIY--EGYALPHAIQRLELAGKDLTDYLTTNLTK 199 (379)
Q Consensus 140 ~~~~~a~~~~--g-----~-~~~lVVDiG~~~t~v~pv~--dG~~~~~~~~~~~~GG~~i~~~l~~~l~~ 199 (379)
++|.+|++++ + . .+.+|||+|+++|+++.+. +|.++.......++||.++++.+.+.+.+
T Consensus 170 ~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~ 239 (346)
T 2fsj_A 170 PQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAK 239 (346)
T ss_dssp ETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999974 2 1 3459999999999999998 78776655678899999999999887754
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.70 E-value=3.9e-16 Score=149.63 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=132.3
Q ss_pred hhHHHHHHHhhccCCCCeEeeecchhhhhhccCCc-----eEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHH
Q 017011 118 INREKMVEIMFEGFEIPATYVAIQAVLSLYASGRT-----TGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDY 192 (379)
Q Consensus 118 ~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~ 192 (379)
...+.+.++ ++..|+....++.+|+|+++++... +.+|||+|+++|+++.+.+|.++ .....++||+++|+.
T Consensus 168 ~~v~n~~~~-~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~--~~~~i~~GG~~it~d 244 (419)
T 4a2a_A 168 KVYEMFYNF-LQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPI--KISYVPVGMKHVIKD 244 (419)
T ss_dssp HHHHHHHHH-HHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEE--EEEEESCCHHHHHHH
T ss_pred HHHHHHHHH-HHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEE--EEEecccHHHHHHHH
Confidence 344555555 4888999999999999999887653 68999999999999999999988 567899999999999
Q ss_pred HHHHHhhCCCcccchhHHHHHHHHHHHcccCccCHHHHHHhcccCCCCcceEEccCCc---eeccCccc-ccccccccCC
Q 017011 193 LTTNLTKDGYIFTTSAEREIVRDIKERLSYVAMDFQKELAMSKESSQLDKQYELPDGQ---VITIGAAQ-FKGPEVLFDP 268 (379)
Q Consensus 193 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~---~i~i~~~~-~~~~E~lF~p 268 (379)
+.+.+ ..+.+.+|.+|.++....... .....+.+|.-. ...++... ..+.+..+.
T Consensus 245 Ia~~l---------~~~~~~AE~iK~~~g~a~~~~-----------~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~ve- 303 (419)
T 4a2a_A 245 VSAVL---------DTSFEESERLIITHGNAVYND-----------LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR- 303 (419)
T ss_dssp HHHHH---------TCCHHHHHHHHHHHCCSCCTT-----------CCCCEEEEECTTSCSEEEEEHHHHHHHHHHHHH-
T ss_pred HHHHH---------CCCHHHHHHHHHHhccCcccC-----------CCCceEEEeecCCccceEEcHHHHHHHHHHHHH-
Confidence 99877 335678999999987643211 122334444211 12222111 111121111
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCH---H-HHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEEC-----C---
Q 017011 269 SRMGLETEGAHEILVRAIMRSDM---D-VRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVA-----P--- 336 (379)
Q Consensus 269 ~~~~~~~~~l~~~i~~~i~~~~~---~-~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~-----~--- 336 (379)
.+.+.|.+.|+.... + ......+.|+||||+|++||+.+.+++.+.. ++++.. +
T Consensus 304 --------ei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~------~vri~~~~~~~p~~~ 369 (419)
T 4a2a_A 304 --------EIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKS------PVRTGCYANSDRPSI 369 (419)
T ss_dssp --------HHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTS------CEEECCGGGSSSCCC
T ss_pred --------HHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCC------CeEEEecCCCCchhc
Confidence 245555666655431 1 1355778899999999999999999999953 344433 2
Q ss_pred -------CCCccceeehhhhhhccc
Q 017011 337 -------PQRLHSVWIGGSILASLS 354 (379)
Q Consensus 337 -------~~~~~~~w~Gasi~a~l~ 354 (379)
.+|.+++-.|-.+++...
T Consensus 370 ~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 370 INADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp BTCHHHHTCGGGHHHHHTTCC----
T ss_pred cCcccccCCchHHHHHHHHHHHhhc
Confidence 368888888888887654
No 22
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.55 E-value=1.2e-14 Score=134.94 Aligned_cols=288 Identities=13% Similarity=0.103 Sum_probs=151.7
Q ss_pred cEEEeCCCceEEEEecCCCCCCCCCCceeE-ecCCCCcc-------ccCCCcceeecchhhhccCCeeeeccccCCcccC
Q 017011 11 SIVCDSGSGSVKTGFAGDDAPCVVFPSLIG-QPRNKNSM-------IGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMVRD 82 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~-~~~~~~~~-------~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i~~ 82 (379)
.+.||+|+.++|+.+..++.....+|+... ........ ...+...+.+|..+.. .......+.-..
T Consensus 2 ~igiD~G~sntK~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~g~~y~vg~~a~~------~~~t~~~~~~~~ 75 (320)
T 2zgy_A 2 LVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD------AVVTTNIAWQYS 75 (320)
T ss_dssp EEEEEECSSEEEEEEECSSSCEEEEEEECCEESSCCCCSSSCCCCEEEETTEEEEECTTCBS------CCCSCCSGGGGS
T ss_pred eEEEecCCccceEEEecCCCEEEEEecCceeecccccccCCCceeEEEECCEEEEEcccccc------cccCcCCCccch
Confidence 478999999999998544433223332211 11111000 0012233555544421 111222222223
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCcEEEEcCCC-C-C---hhhHHHHHHHh-----------hccCCCCeEeeecchhhhh
Q 017011 83 WDAMERLWEHIFDKELRVTIEEHPVLLTEPPL-N-P---KINREKMVEIM-----------FEGFEIPATYVAIQAVLSL 146 (379)
Q Consensus 83 ~~~~~~~l~~~~~~~l~~~~~~~~vvl~~~~~-~-~---~~~~~~l~~~l-----------fe~~~~~~v~~~~~~~~a~ 146 (379)
...+-.+. +.+. ..+....+..+++..|.. + . +.+++.+.+.. .+.+++..+.++++|++|+
T Consensus 76 ~~~l~~i~-~aL~-~~~~~~~~~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e~~aa~ 153 (320)
T 2zgy_A 76 DVNVVAVH-HALL-TSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAG 153 (320)
T ss_dssp HHHHHHHH-HHHH-HHSCCSCEEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEESSHHHH
T ss_pred HHHHHHHH-HHHH-HcCCCCceEEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecCcHHHH
Confidence 33333333 3332 223333334578888854 2 2 11112222211 2445678899999999999
Q ss_pred hccC-----CceEEEEeCCCCcEEEEEeecCee-cccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHHHH-HHH
Q 017011 147 YASG-----RTTGIVMDSGEGVTHVVPIYEGYA-LPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVRDI-KER 219 (379)
Q Consensus 147 ~~~g-----~~~~lVVDiG~~~t~v~pv~dG~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~ 219 (379)
++++ ..+.+|||+|+++|+++.+.+|.+ +.......++||.++++.+.+.+.+++ . ..+...++++ |.+
T Consensus 154 ~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~~--~--~i~~~~ae~~lk~~ 229 (320)
T 2zgy_A 154 YEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR--T--KGSSYLADDIIIHR 229 (320)
T ss_dssp HHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCCS--B--GGGHHHHHHHHHTT
T ss_pred HhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHcC--C--CCCHHHHHHHHHHh
Confidence 8763 357899999999999999999876 433456779999999999999997542 2 2344567776 544
Q ss_pred cccCccCHHHHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc
Q 017011 220 LSYVAMDFQKELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEILVRAIMRSDMDVRREMYG 299 (379)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~~~r~~l~~ 299 (379)
... .+... .. .+|. ......+. +.+. ...+.+.|.+.+++. .-.+
T Consensus 230 ~~~---~~~~~--~i----------~~~~--------~~~~~~~~-i~~~-----~~~~~~~i~~~i~~~------~~~~ 274 (320)
T 2zgy_A 230 KDN---NYLKQ--RI----------NDEN--------KISIVTEA-MNEA-----LRKLEQRVLNTLNEF------SGYT 274 (320)
T ss_dssp TCH---HHHHH--HS----------SSSC--------THHHHHHH-HHHH-----HHHHHHHHHHHHTTC------CCCC
T ss_pred hhh---hcccc--ee----------cCch--------hhHHHHHH-HHHH-----HHHHHHHHHHHHHhh------cCCC
Confidence 210 00000 00 0000 00000000 0000 001233333333332 2346
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.|+||||+|++ +.+.+++. ++.. .-++..+.+|+++..+|+.++++
T Consensus 275 ~vvl~GGga~l--l~~~l~~~----~~~~-~~~~~~~~~P~~a~A~G~~~~~~ 320 (320)
T 2zgy_A 275 HVMVIGGGAEL--ICDAVKKH----TQIR-DERFFKTNNSQYDLVNGMYLIGN 320 (320)
T ss_dssp EEEEESTTHHH--HHHHHHHT----SCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred eEEEECChHHH--HHHHHHHH----hCCC-CCceeeCCCcHHHHHHHHHHhcC
Confidence 89999999987 55555543 3321 00245567899999999998864
No 23
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.48 E-value=2.7e-14 Score=132.79 Aligned_cols=186 Identities=16% Similarity=0.082 Sum_probs=117.5
Q ss_pred cCcCCCCcEEEeCCCceEEEEec--C---CCCCCCCCCceeEecCCCC-------ccccCCCcceeecchhhhccCCeee
Q 017011 4 EDLYEFRSIVCDSGSGSVKTGFA--G---DDAPCVVFPSLIGQPRNKN-------SMIGIGQKDMYFGDEAQAKRGVLRL 71 (379)
Q Consensus 4 ~~~~~~~~vviD~Gs~~~k~G~~--g---e~~P~~~~p~~~~~~~~~~-------~~~~~~~~~~~vg~~a~~~~~~~~~ 71 (379)
+..++.-.|.||+|-.++|+-.. + +..-+..|||.++...... .....+.+.+++|+.+...
T Consensus 2 ~~~~~~~iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~------ 75 (329)
T 4apw_A 2 ENITNEYVMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVED------ 75 (329)
T ss_dssp ---CCEEEEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSC------
T ss_pred CCccCceEEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccccc------
Confidence 34455567899999999998753 2 1223456788876533211 1122345678888765311
Q ss_pred eccccCCcccCHHHHHHHHHHHHhhhccCC-CCCCcEEEEcCCCCCh--hhHHHHHHHhhcc-------------CCCCe
Q 017011 72 SHPVNRGMVRDWDAMERLWEHIFDKELRVT-IEEHPVLLTEPPLNPK--INREKMVEIMFEG-------------FEIPA 135 (379)
Q Consensus 72 ~~p~~~g~i~~~~~~~~~l~~~~~~~l~~~-~~~~~vvl~~~~~~~~--~~~~~l~~~lfe~-------------~~~~~ 135 (379)
...... +-+....++..++-..+... ..+..+++..|...-. .+|+.+.+.+-.. +.+..
T Consensus 76 --~~~~~k--~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~ 151 (329)
T 4apw_A 76 --SSETSK--TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITD 151 (329)
T ss_dssp --SGGGCC--CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEE
T ss_pred --cccCCc--CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeE
Confidence 111112 12244445555553344332 1224466666654332 3466666655421 12457
Q ss_pred EeeecchhhhhhccC----CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhh
Q 017011 136 TYVAIQAVLSLYASG----RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTK 199 (379)
Q Consensus 136 v~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~ 199 (379)
+.+.|+++.+.+... ..+.+|||+|+++|+++.+.+|.++.......++||.++++.+.+.+..
T Consensus 152 v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 152 ITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTD 219 (329)
T ss_dssp EEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSS
T ss_pred EEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHh
Confidence 889999999998762 3577999999999999999999998777778999999999999998865
No 24
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.41 E-value=2e-13 Score=128.05 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=118.2
Q ss_pred CcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCc---------------cccCCCcc-eeecchhhhccCCeeeec
Q 017011 10 RSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNS---------------MIGIGQKD-MYFGDEAQAKRGVLRLSH 73 (379)
Q Consensus 10 ~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~---------------~~~~~~~~-~~vg~~a~~~~~~~~~~~ 73 (379)
..|-||+|-.++|+ ..++ -.+.|||.++...+... ....+... +++|+.|...... ..+
T Consensus 5 ~iigiD~G~~~~K~-~~~~--~~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~~~~~~--~~~ 79 (355)
T 3js6_A 5 YVMALDFGNGFVKG-KIND--EKFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNT--GKD 79 (355)
T ss_dssp EEEEEEECSSEEEE-EETT--EEEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHHHHCSC--CEE
T ss_pred EEEEEEcCCCcEEE-ecCC--eEEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhhhcCcc--ccc
Confidence 46899999999996 4443 24578888875333210 01123445 8899887543111 112
Q ss_pred cc-cCCcccCHHHHHHHHHHHHhh---hccCCCCCCcEEEEcCCCCChhhH-HHHHHHhhcc-----------CCCCeEe
Q 017011 74 PV-NRGMVRDWDAMERLWEHIFDK---ELRVTIEEHPVLLTEPPLNPKINR-EKMVEIMFEG-----------FEIPATY 137 (379)
Q Consensus 74 p~-~~g~i~~~~~~~~~l~~~~~~---~l~~~~~~~~vvl~~~~~~~~~~~-~~l~~~lfe~-----------~~~~~v~ 137 (379)
.+ ...+..+-+ ...++...+.. .+..+..+-.+++..|.-....++ +++.+.+... +.+..|.
T Consensus 80 ~~~~~~k~~~~~-~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~ 158 (355)
T 3js6_A 80 TASTNDRYDIKS-FKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVK 158 (355)
T ss_dssp CCCSTTGGGSHH-HHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEE
T ss_pred ccccCCcccCHH-HHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEE
Confidence 22 233443322 22233333311 111111134577888877666665 4666666422 1236899
Q ss_pred eecchhhhhhccC-----------CceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhC
Q 017011 138 VAIQAVLSLYASG-----------RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKD 200 (379)
Q Consensus 138 ~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 200 (379)
++++|++|+++.+ ..+.+|||+|+++|+++.+.+|.++...+..+++||..+++.+.+.+.++
T Consensus 159 v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 159 IVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred EEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999875 35679999999999999998889987777889999999999999999764
No 25
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.95 E-value=1.8e-09 Score=103.09 Aligned_cols=183 Identities=16% Similarity=0.128 Sum_probs=107.7
Q ss_pred cchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHH
Q 017011 140 IQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVR 214 (379)
Q Consensus 140 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 214 (379)
-+|.+|.+++-. ...++||+|+++|+++.+.+|..+ +...++.||+++|..+..-|. ..+.+.+|
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv--~a~~ip~gG~~VT~DIA~~Lg--------t~d~~~AE 459 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDI--IATHLAGAGDMVTMIIARELG--------LEDRYLAE 459 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCE--EEEEEECSHHHHHHHHHHHHT--------CCCHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC--------CCCHHHHH
Confidence 677777777643 378999999999999999999998 777899999999999999983 22378899
Q ss_pred HHHHHcccCccCHHHHHHhcccCCCCcceEEc--cCCceeccCcccccccccccCCC-CCCCCCCC--HHH--HHHHHHH
Q 017011 215 DIKERLSYVAMDFQKELAMSKESSQLDKQYEL--PDGQVITIGAAQFKGPEVLFDPS-RMGLETEG--AHE--ILVRAIM 287 (379)
Q Consensus 215 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~~i~i~~~~~~~~E~lF~p~-~~~~~~~~--l~~--~i~~~i~ 287 (379)
++|. +.....+.. -.. ......+++ |.-....++.. .+..|+ +... .+. +.+ ++.+.+.
T Consensus 460 rIK~-YG~A~ve~l---f~~---~dede~Iev~~~~lgp~~~~Rv------~~~~~~~L~~I-~pR~~vEElelVR~~ak 525 (610)
T 2d0o_A 460 EIKK-YPLAKVESL---FHL---RHEDGSVQFFSTPLPPAVFARV------CVVKADELVPL-PGDLALEKVRAIRRSAK 525 (610)
T ss_dssp HHHH-SCEEEECSS---SEE---EETTSCEEECSSCCCGGGTTCE------EEECSSCEEEC-CTTCCHHHHHHHHHHHH
T ss_pred Hhcc-cCceeeccc---ccc---cCCCCeEEEecCCCCcceeeee------ecccccceeee-CCCcchHHHHHHHHHHh
Confidence 9999 765543210 000 001112222 11110000000 000001 0011 122 444 2222211
Q ss_pred hC---CHHHHH----h-hh-----cCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEEC-----CCCCccceeehhhh
Q 017011 288 RS---DMDVRR----E-MY-----GNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVA-----PPQRLHSVWIGGSI 349 (379)
Q Consensus 288 ~~---~~~~r~----~-l~-----~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~-----~~~~~~~~w~Gasi 349 (379)
+. ...+|. . +- ..|+||||+|+++|+.+-.++.|.++ .+++-. ...|.|++..|-.+
T Consensus 526 ~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y-----~VRiGrP~~~gv~gP~fAtAvGLll 600 (610)
T 2d0o_A 526 ERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHY-----RLVAGRGNIRGSEGPRNAVATGLIL 600 (610)
T ss_dssp HHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTS-----SCEEEECCGGGTSTTSCHHHHHHHH
T ss_pred hhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCCcHHHHHHHHH
Confidence 11 111221 1 22 56999999999999999999999763 334433 34688888888665
Q ss_pred hh
Q 017011 350 LA 351 (379)
Q Consensus 350 ~a 351 (379)
|-
T Consensus 601 y~ 602 (610)
T 2d0o_A 601 SW 602 (610)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.93 E-value=1.9e-09 Score=103.28 Aligned_cols=181 Identities=16% Similarity=0.136 Sum_probs=107.2
Q ss_pred cchhhhhhccCC-----ceEEEEeCCCCcEEEEEeecCeecccceEEecccHHHHHHHHHHHHhhCCCcccchhHHHHHH
Q 017011 140 IQAVLSLYASGR-----TTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKDLTDYLTTNLTKDGYIFTTSAEREIVR 214 (379)
Q Consensus 140 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 214 (379)
-+|.+|.+++-. ...++||+|+++|+++.+.+|..+ +...++.||+++|..+..-|. ..+.+.+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv--~a~~ip~gG~~VT~DIA~~Lg--------~~d~~~AE 461 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQI--TAVHLAGAGNMVSLLIKTELG--------LEDLSLAE 461 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCE--EEEEEECCHHHHHHHHHHHHT--------CSCHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC--------CCCHHHHH
Confidence 677777776643 378999999999999999999998 777899999999999999983 22378899
Q ss_pred HHHHHcccCccCHHHHHHhcccCCCCcceEEc--cCCceeccCccc----ccccccccCCCCCCCCCCCHHH--HHHHHH
Q 017011 215 DIKERLSYVAMDFQKELAMSKESSQLDKQYEL--PDGQVITIGAAQ----FKGPEVLFDPSRMGLETEGAHE--ILVRAI 286 (379)
Q Consensus 215 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--p~~~~i~i~~~~----~~~~E~lF~p~~~~~~~~~l~~--~i~~~i 286 (379)
++|. +........ -.. ......+++ |.-....++... ....++ .|. .++.+ ++.+.+
T Consensus 462 rIK~-YG~A~~e~l---f~~---~dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I--~~R------~~vEElelVR~~a 526 (607)
T 1nbw_A 462 AIKK-YPLAKVESL---FSI---RHENGAVEFFREALSPAVFAKVVYIKEGELVPI--DNA------SPLEKIRLVRRQA 526 (607)
T ss_dssp HHHH-SCEEEECSS---SEE---EETTSCEEECSSCCCGGGTTCEEEEETTEEEEE--CCS------SCHHHHHHHHHHH
T ss_pred Hhcc-cCceeeccc---ccc---cCCCCeEEEecCCCCcceeeeeecccccceeee--CCC------cchHHHHHHHHHH
Confidence 9999 765543210 000 001112222 111100010000 000011 221 12444 222221
Q ss_pred HhC---CHHHHH-----hhh-----cCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEEC-----CCCCccceeehhh
Q 017011 287 MRS---DMDVRR-----EMY-----GNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVA-----PPQRLHSVWIGGS 348 (379)
Q Consensus 287 ~~~---~~~~r~-----~l~-----~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~-----~~~~~~~~w~Gas 348 (379)
.+. ...+|. .+- ..|+||||+|+++|+.+-.++.|.++ .+++-. ...|.|++..|-.
T Consensus 527 k~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~-----~VRiGrP~~~g~~gP~fAtAvGLl 601 (607)
T 1nbw_A 527 KEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHY-----GVVAGQGNIRGTEGPRNAVATGLL 601 (607)
T ss_dssp HHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTT-----TCEEEECCGGGTSCSCCHHHHHHH
T ss_pred hhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCchHHHHHHHH
Confidence 111 111221 122 56999999999999999999999873 233332 3468888888865
Q ss_pred hh
Q 017011 349 IL 350 (379)
Q Consensus 349 i~ 350 (379)
+|
T Consensus 602 ly 603 (607)
T 1nbw_A 602 LA 603 (607)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 27
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=98.40 E-value=2.2e-06 Score=77.23 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=93.5
Q ss_pred eEeeecchhhhhhccC---CceEEEEeCCCCcEEEEEee-cCeecccce-EEecccHHHHHHHHHHHHhhCCCcccchhH
Q 017011 135 ATYVAIQAVLSLYASG---RTTGIVMDSGEGVTHVVPIY-EGYALPHAI-QRLELAGKDLTDYLTTNLTKDGYIFTTSAE 209 (379)
Q Consensus 135 ~v~~~~~~~~a~~~~g---~~~~lVVDiG~~~t~v~pv~-dG~~~~~~~-~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 209 (379)
.+..++++.+.+++.. .....|+|+|++.+.++-+. +|....... .++.-|+.++.+.+.+.|. .+++..
T Consensus 73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~---~~~~~~-- 147 (276)
T 4ehu_A 73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIE---VDVSEL-- 147 (276)
T ss_dssp CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHHT---CCGGGH--
T ss_pred CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHhc---cChhhh--
Confidence 3567888888877653 34668999999998888763 454331111 2356677777777777773 222211
Q ss_pred HHHHHHHHHHcc---cCc---cCHH-HHHHhcccCCCCcceEEccCCceeccCcccccccccccCCCCCCCCCCCHHHHH
Q 017011 210 REIVRDIKERLS---YVA---MDFQ-KELAMSKESSQLDKQYELPDGQVITIGAAQFKGPEVLFDPSRMGLETEGAHEIL 282 (379)
Q Consensus 210 ~~~~~~ik~~~~---~~~---~~~~-~~~~~~~~~~~~~~~~~lp~~~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i 282 (379)
..+....- -.+ ..+. .+...... .+ ....++ ..++.+.|
T Consensus 148 ----~~~~~~a~~~~~i~~~~~~f~~s~~~~~~~-----------~~---------~~~~di----------~a~~~~~v 193 (276)
T 4ehu_A 148 ----GSISMNSQNEVSISSTCTVFAESEVISHLS-----------EN---------AKIEDI----------VAGIHTSV 193 (276)
T ss_dssp ----HHHHTTCSSCCCCCCCSHHHHHHHHHHHHH-----------TT---------CCHHHH----------HHHHHHHH
T ss_pred ----HHHHhcCCCCCCcCCccchhhhhHHHHhhh-----------cc---------ccHHHH----------HHHHHHHH
Confidence 11110000 000 0000 00000000 00 000000 01233444
Q ss_pred HHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhcc
Q 017011 283 VRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASL 353 (379)
Q Consensus 283 ~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l 353 (379)
.+.+... -.+....+.|+++||.|+.|+++++|++.+. .++..+++|++....||+++|.-
T Consensus 194 ~~~l~~~--~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A~~ 254 (276)
T 4ehu_A 194 AKRVSSL--VKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYAFD 254 (276)
T ss_dssp HHHHHHH--HHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHH--HHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHHHH
Confidence 4433221 2334456789999999999999999998873 24667788999989999999853
No 28
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.63 E-value=4.5e-05 Score=68.34 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=40.0
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|+++||.++-|++.+.+.+.|.. +|..++++++..-.||+++|...
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHHH
T ss_pred CCeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHHh
Confidence 36799999999999999999998843 35556677888899999998643
No 29
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=96.90 E-value=0.0065 Score=54.41 Aligned_cols=51 Identities=18% Similarity=-0.012 Sum_probs=41.2
Q ss_pred hhhcCeEeecC-CCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 296 EMYGNVVLSGG-TSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 296 ~l~~nIil~GG-~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.-+++|+++|| .+..|++.++|.+.++.. ..++.-++++++...+||++++
T Consensus 235 ~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 235 FKTENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp TTCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhC
Confidence 33457999999 999999999999876442 3456667889999999999876
No 30
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=96.89 E-value=0.0022 Score=58.48 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHhhccCCCCeEeeecch---hhhhh----ccC-CceEEEEeCCCCcEEEEEeecCeecccceEEecccHH
Q 017011 116 PKINREKMVEIMFEGFEIPATYVAIQA---VLSLY----ASG-RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187 (379)
Q Consensus 116 ~~~~~~~l~~~lfe~~~~~~v~~~~~~---~~a~~----~~g-~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~ 187 (379)
...+++.+++.+-+.+|++ +.+++.. .+..+ ..+ ..+++|||+|+++|.++-+.+|.+. .....|+|+-
T Consensus 95 ~A~N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v 171 (315)
T 1t6c_A 95 RAKNAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIV 171 (315)
T ss_dssp TSTTHHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHH
T ss_pred cCcCHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHH
Confidence 4456677788777777876 3344422 22221 123 5689999999999999998888876 6678999999
Q ss_pred HHHHHH
Q 017011 188 DLTDYL 193 (379)
Q Consensus 188 ~i~~~l 193 (379)
.+++.+
T Consensus 172 ~l~e~~ 177 (315)
T 1t6c_A 172 NLTETF 177 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888875
No 31
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=96.39 E-value=0.0028 Score=57.91 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=50.4
Q ss_pred hhHHHHHHHhhccCCCCeEeeec---chhhhh------hccCCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHH
Q 017011 118 INREKMVEIMFEGFEIPATYVAI---QAVLSL------YASGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKD 188 (379)
Q Consensus 118 ~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~------~~~g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 188 (379)
.++..+++.+-+.+|++- .+++ ++.+.. +.....+++|+|+|+++|.++-+.++.+. ...+.|+|.-.
T Consensus 89 ~N~~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr 165 (315)
T 3mdq_A 89 SNKQVLIDRIKKEVNIDV-EVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQR 165 (315)
T ss_dssp TTHHHHHHHHHHHHCCCE-EECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHHH
T ss_pred cCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe--eeEEEechhhH
Confidence 455667777766677652 3333 332222 22223679999999999999999988887 66789999887
Q ss_pred HHHHH
Q 017011 189 LTDYL 193 (379)
Q Consensus 189 i~~~l 193 (379)
+++.+
T Consensus 166 l~e~f 170 (315)
T 3mdq_A 166 LIDRF 170 (315)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77654
No 32
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=96.28 E-value=0.11 Score=47.42 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=38.2
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCC-CceEEEECCCCCccceeehhhhhh
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASP-GVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~-~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.|+|.||.+..+-|.+++++.+.+.... ...++|..+.....+...||+.++
T Consensus 272 ~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 272 VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 5889999898888888999888876532 224566656555667888988765
No 33
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=96.22 E-value=0.058 Score=49.13 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=35.6
Q ss_pred ccCCCCeEeeecchhhhhhc-------cCCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 129 EGFEIPATYVAIQAVLSLYA-------SGRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~-------~g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+.+++| |.+.++.-+++++ -+..+.++|-+|.+ +-...|.+|.++.
T Consensus 94 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~ 146 (321)
T 3vgl_A 94 QRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRR 146 (321)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred hhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEec
Confidence 345777 8899999998875 24578999999987 6667778998874
No 34
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=96.19 E-value=0.011 Score=57.68 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHhhccCCCCeEeeecc---hhhhhhc----cC-CceEEEEeCCCCcEEEEEeecCeecccceEEecccHH
Q 017011 116 PKINREKMVEIMFEGFEIPATYVAIQ---AVLSLYA----SG-RTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGK 187 (379)
Q Consensus 116 ~~~~~~~l~~~lfe~~~~~~v~~~~~---~~~a~~~----~g-~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~ 187 (379)
...++..+++.+-+.+|++- .+++. +-+...+ .. ...++|||||+++|.++-+.++.+. ...+.|+|.-
T Consensus 94 ~A~N~~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~v 170 (513)
T 1u6z_A 94 QALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCV 170 (513)
T ss_dssp HCTTHHHHHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEE--EEEEESCCHH
T ss_pred cCcCHHHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeee--EEEEEeccHH
Confidence 34566778888878888763 34432 2222222 11 2379999999999999988888877 5677999998
Q ss_pred HHHHHH
Q 017011 188 DLTDYL 193 (379)
Q Consensus 188 ~i~~~l 193 (379)
.+++.+
T Consensus 171 rlte~f 176 (513)
T 1u6z_A 171 SFAQLY 176 (513)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 35
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=96.08 E-value=0.036 Score=49.72 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHhhccCCCCeEeeecchhhhhhcc-----CCceEEEEeCCCCcEEEEEeecCeeccc
Q 017011 123 MVEIMFEGFEIPATYVAIQAVLSLYAS-----GRTTGIVMDSGEGVTHVVPIYEGYALPH 177 (379)
Q Consensus 123 l~~~lfe~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~pv~dG~~~~~ 177 (379)
+.+.+ +.+++| |.+.++.-+++++- +..+.++|-+|.+ +-...|.+|.++..
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 143 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHRG 143 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEec
Confidence 55666 778887 78999999998873 5678999999986 55666789987643
No 36
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=96.03 E-value=0.0052 Score=56.72 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=48.9
Q ss_pred hhHHHHHHHhhccCCCCeEeeec---chhhhhhcc--------CCceEEEEeCCCCcEEEEEeec--Ceec--ccceEEe
Q 017011 118 INREKMVEIMFEGFEIPATYVAI---QAVLSLYAS--------GRTTGIVMDSGEGVTHVVPIYE--GYAL--PHAIQRL 182 (379)
Q Consensus 118 ~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~--------g~~~~lVVDiG~~~t~v~pv~d--G~~~--~~~~~~~ 182 (379)
.++..+++.+-+.+|++ +.+++ ++.++.++. ....++|||+|+++|.++.+.+ +.+. ......+
T Consensus 102 ~N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Sl 180 (343)
T 3cer_A 102 ENREEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSM 180 (343)
T ss_dssp TTHHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEE
T ss_pred cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEE
Confidence 45566777776666665 23333 333333322 2256999999999999998876 3321 1156689
Q ss_pred cccHHHHHHHH
Q 017011 183 ELAGKDLTDYL 193 (379)
Q Consensus 183 ~~GG~~i~~~l 193 (379)
|+|+..+++.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 99999888876
No 37
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=95.92 E-value=0.026 Score=51.99 Aligned_cols=56 Identities=13% Similarity=-0.040 Sum_probs=40.9
Q ss_pred HHhhhcCeEeecC-CCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 294 RREMYGNVVLSGG-TSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 294 r~~l~~nIil~GG-~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
++.-+++|+++|| .+.-|++.+.|.+.|.---.. .+++.-+.++++...+||++..
T Consensus 302 ~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 302 LNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred HHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence 3444568999999 999999999999998521111 2234445678999999999864
No 38
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=95.86 E-value=0.057 Score=49.15 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=35.0
Q ss_pred cCCCCeEeeecchhhhhhcc-------CCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 130 GFEIPATYVAIQAVLSLYAS-------GRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 130 ~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
.+++| |.+.++.-+++++- +..+.++|-+|.+ +-...+.+|..+.
T Consensus 107 ~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~ 158 (326)
T 2qm1_A 107 ALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLH 158 (326)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEee
Confidence 34677 78999999988752 4578999999988 6677778998774
No 39
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=95.86 E-value=0.035 Score=54.09 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHhhccCCCCeEeeec---chhhhhhc----cCCceEEEEeCCCCcEEEEEeecCeecccceEEecccHHH
Q 017011 116 PKINREKMVEIMFEGFEIPATYVAI---QAVLSLYA----SGRTTGIVMDSGEGVTHVVPIYEGYALPHAIQRLELAGKD 188 (379)
Q Consensus 116 ~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~----~g~~~~lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 188 (379)
...+...+++.+-+.+|++ +.+++ ++-+..++ .....++|||||+++|.++-+.+|.+. ...+.|+|.-.
T Consensus 98 ~A~N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr 174 (508)
T 3hi0_A 98 EAENGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLR 174 (508)
T ss_dssp HSTTHHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHH
T ss_pred cCcCHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEe
Confidence 3455666777776777776 23333 33322222 233578999999999999999999887 66789999987
Q ss_pred HHHH
Q 017011 189 LTDY 192 (379)
Q Consensus 189 i~~~ 192 (379)
+++.
T Consensus 175 l~e~ 178 (508)
T 3hi0_A 175 LSEQ 178 (508)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 7763
No 40
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=95.86 E-value=0.053 Score=49.42 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.6
Q ss_pred ccC-CCCeEeeecchhhhhhc-------cCCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 129 EGF-EIPATYVAIQAVLSLYA-------SGRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 129 e~~-~~~~v~~~~~~~~a~~~-------~g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+.+ ++| |++.++.-+++++ .+..+.++|-+|.+ +-...|.+|.++.
T Consensus 115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~ 168 (321)
T 3r8e_A 115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFI 168 (321)
T ss_dssp HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEec
Confidence 456 776 7899999988775 24578999999987 6666778998875
No 41
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=95.51 E-value=0.26 Score=44.36 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=35.5
Q ss_pred CeEeecCCC-CC-CCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGGTS-LI-PGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG~s-~i-~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.|+|.||.+ .. +-|.+++++.+.+........+|..+.....+...||+.++-
T Consensus 240 ~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 240 VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 588888887 65 448889998888765432222354444455678889887654
No 42
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=93.99 E-value=3.2 Score=36.96 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=38.7
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.|+|.||.+..+.|.+++++.+...... .++|..+...+.+...||+.++.
T Consensus 240 ~IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~lg~~a~~~GAa~l~~ 290 (297)
T 4htl_A 240 HIFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATHKNQAGLLGAVYHFL 290 (297)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSCTTTHHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCcCChHHHHhHHHHHH
Confidence 5899999999899999999999876543 34555555556788889887664
No 43
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=93.42 E-value=0.55 Score=42.57 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=34.6
Q ss_pred cCCCCeEeeecchhhhhhcc-------CCceEEEEeCCCCcEEEEEeecCeeccc
Q 017011 130 GFEIPATYVAIQAVLSLYAS-------GRTTGIVMDSGEGVTHVVPIYEGYALPH 177 (379)
Q Consensus 130 ~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~dG~~~~~ 177 (379)
.+++| |.+.++.-+++++- +..+.++|-+|.+ +-...|.+|..+..
T Consensus 119 ~~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 171 (327)
T 2ap1_A 119 RLDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVLNGKPITG 171 (327)
T ss_dssp HHTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEEETTEEECC
T ss_pred HHCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEEECCEEeec
Confidence 35677 88999999988752 3568899999987 55666789987743
No 44
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=92.78 E-value=0.19 Score=46.41 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=25.0
Q ss_pred ceEEEEeCCCCcEEEEEeec--CeecccceEEecccHH
Q 017011 152 TTGIVMDSGEGVTHVVPIYE--GYALPHAIQRLELAGK 187 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~d--G~~~~~~~~~~~~GG~ 187 (379)
.+.+|+|+|+++|.++-... +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 46999999999999997644 3333333456677763
No 45
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=92.75 E-value=2.4 Score=38.48 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhhccCCCC--CCcEEEEcCCCCChhhHHHHHHHhhccCC--CCeEeeecchhhhhhccCCceEEEEe
Q 017011 83 WDAMERLWEHIFDKELRVTIE--EHPVLLTEPPLNPKINREKMVEIMFEGFE--IPATYVAIQAVLSLYASGRTTGIVMD 158 (379)
Q Consensus 83 ~~~~~~~l~~~~~~~l~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~g~~~~lVVD 158 (379)
++.+.+.++.++ +..+.++. -..+-+..|-.........+.+.+-+.++ .-.|.+.++.-+++++....++++|-
T Consensus 49 ~~~i~~~i~~~~-~~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~~~~~~v~v~ 127 (347)
T 2ch5_A 49 VERINEMVNRAK-RKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLI 127 (347)
T ss_dssp HHHHHHHHHHHH-HHHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHH-HhcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhhCCCCcEEEE
Confidence 345555555555 33333322 24577777776655444445555545565 23478999999988875446788888
Q ss_pred CCCCcEEEEEeecCee
Q 017011 159 SGEGVTHVVPIYEGYA 174 (379)
Q Consensus 159 iG~~~t~v~pv~dG~~ 174 (379)
+|.+.-......+|..
T Consensus 128 ~GTGig~~~v~~~G~~ 143 (347)
T 2ch5_A 128 SGTGSNCRLINPDGSE 143 (347)
T ss_dssp ESSSEEEEEECTTSCE
T ss_pred EcCCceeEEEcCCCCE
Confidence 8887654433336644
No 46
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=92.18 E-value=0.093 Score=47.54 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.9
Q ss_pred ceEEEEeCCCCcEEEEEeecCeeccc
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGYALPH 177 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~~~~~ 177 (379)
.++++||||+.+|+|+|+.+|.++..
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~g 152 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVAE 152 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred CCEEEEEcCcchhhhhhhcCCeeccc
Confidence 68999999999999999999999753
No 47
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=90.36 E-value=2.3 Score=37.35 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.9
Q ss_pred cEEEeCCCceEEEEecCC
Q 017011 11 SIVCDSGSGSVKTGFAGD 28 (379)
Q Consensus 11 ~vviD~Gs~~~k~G~~ge 28 (379)
.++||+|-+++|+|+..+
T Consensus 4 lL~IDIGNT~iK~gl~d~ 21 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDG 21 (266)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEECCCeEEEEEEEC
Confidence 589999999999998854
No 48
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=90.29 E-value=1.1 Score=39.46 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.9
Q ss_pred EEEeCCCceEEEEecCC
Q 017011 12 IVCDSGSGSVKTGFAGD 28 (379)
Q Consensus 12 vviD~Gs~~~k~G~~ge 28 (379)
++||+|-+++|.|+..+
T Consensus 3 L~IDIGNT~ik~gl~~~ 19 (268)
T 2h3g_X 3 FVLDVGNTNAVLGVFEE 19 (268)
T ss_dssp EEEEECSSEEEEEEEET
T ss_pred EEEEECcCcEEEEEEEC
Confidence 78999999999998744
No 49
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=86.81 E-value=1.9 Score=40.97 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhccC-CCCCCcEEEEcCCCC---C---hhhHHHHHHHhhccC---CC--CeEeeecch---h----h
Q 017011 84 DAMERLWEHIFDKELRV-TIEEHPVLLTEPPLN---P---KINREKMVEIMFEGF---EI--PATYVAIQA---V----L 144 (379)
Q Consensus 84 ~~~~~~l~~~~~~~l~~-~~~~~~vvl~~~~~~---~---~~~~~~l~~~lfe~~---~~--~~v~~~~~~---~----~ 144 (379)
+.+..+++++. +.... .....||.+.-..-+ + ...++.+++.+-+.+ ++ ..+.+++.. + +
T Consensus 89 ~~l~~Ll~~a~-~~vp~~~~~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~ 167 (452)
T 3zx3_A 89 AYLAECMKMST-ERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWIT 167 (452)
T ss_dssp HHHHHHHHHHH-HHSCHHHHTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHcCCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHH
Confidence 44555666554 22211 124567776654332 1 123445555443333 22 456666532 2 2
Q ss_pred hhhccCC------ceEEEEeCCCCcEEEEEeecC
Q 017011 145 SLYASGR------TTGIVMDSGEGVTHVVPIYEG 172 (379)
Q Consensus 145 a~~~~g~------~~~lVVDiG~~~t~v~pv~dG 172 (379)
+.|..|. .+..++|+|+++|.|+-..++
T Consensus 168 vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~ 201 (452)
T 3zx3_A 168 INYLLGRFKTPGGSTFGALDLGGASTQITFVPLN 201 (452)
T ss_dssp HHHHTTTTC---CCCCEEEEECSSEEEEEECCSS
T ss_pred HHhhhccccCCCCCceEEEecCCCceEEEeccCC
Confidence 2233442 567788999999999866554
No 50
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=86.12 E-value=2.4 Score=36.85 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.3
Q ss_pred CceEEEEeCCCCcEEEEEeecCeec
Q 017011 151 RTTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 151 ~~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
...++|||+|...|--+. .+|.-+
T Consensus 121 ~~~~iVvD~GTA~T~d~v-~~g~~l 144 (249)
T 3bex_A 121 GKNGIIIDMGTATTVDLV-VNGSYE 144 (249)
T ss_dssp CSCEEEEEESSEEEEEEE-ETTEEE
T ss_pred CCCEEEEEcCCceEEEEE-eCCeEe
Confidence 468999999988765555 777655
No 51
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=85.57 E-value=5.9 Score=34.98 Aligned_cols=69 Identities=14% Similarity=0.011 Sum_probs=47.3
Q ss_pred cEEEEcCCCCChhhHHHHHHHhhccCCC-CeEeeecchhhhhhc-cCCceEEEEeCCCCcEEEEEeecCeec
Q 017011 106 PVLLTEPPLNPKINREKMVEIMFEGFEI-PATYVAIQAVLSLYA-SGRTTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 106 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~-~g~~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
.+-+..|-.. ......+.+.+-+.+++ ..+.+.++.-+++++ .+..+++++=+|.+..-...+.||...
T Consensus 62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~ 132 (291)
T 1zbs_A 62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKA 132 (291)
T ss_dssp EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEE
T ss_pred EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEE
Confidence 4666666654 22223444444445665 368999999999997 577888888898888655556788875
No 52
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=78.57 E-value=19 Score=31.86 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCC---CcEEEEcCCCCChhhHHHHHHHhhccCC-CCeEeeecchhhhhhcc-CCceEEEE
Q 017011 83 WDAMERLWEHIFDKELRVTIEE---HPVLLTEPPLNPKINREKMVEIMFEGFE-IPATYVAIQAVLSLYAS-GRTTGIVM 157 (379)
Q Consensus 83 ~~~~~~~l~~~~~~~l~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~-~~~v~~~~~~~~a~~~~-g~~~~lVV 157 (379)
++.+.+.++.++ +....++.+ ..+-+..|-......... ++ +.+. -..|.+.++.-+++++. +..++++|
T Consensus 53 ~~~l~~~i~~~l-~~~~~~~~~i~~~~igig~pG~v~~~~~~~-l~---~~~~~~~pv~v~NDa~aaa~ge~~~~~~v~v 127 (305)
T 1zc6_A 53 WQAVLSTLEAAF-QQAGLPAAPASACAIGLGLSGVHNRQWAGE-FE---SQAPGFARLSLATDGYTTLLGAHGGQPGIIV 127 (305)
T ss_dssp HHHHHHHHHHHH-HHTTCCCCCGGGEEEEEEESCCCTTSHHHH-HH---HTCCCCSEEEEECHHHHHHHHHTTTSSEEEE
T ss_pred HHHHHHHHHHHH-HhcCCChhhhccceEEEEecCCCchHHHHH-HH---HhCCCCceEEEECCHHHHHHhhcCCCCeEEE
Confidence 345555555555 333333333 236677776554333222 22 2332 23488999999998873 56788899
Q ss_pred eCCCCcEEEEEeecCeec
Q 017011 158 DSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 158 DiG~~~t~v~pv~dG~~~ 175 (379)
-+|.+..-...+.+|...
T Consensus 128 ~~GTGigg~~i~~~G~~~ 145 (305)
T 1zc6_A 128 ALGTGSIGEALYPDGSHR 145 (305)
T ss_dssp EESSSEEEEEECTTSCEE
T ss_pred EecCCeEEEEEeCCCcEE
Confidence 999887534333478654
No 53
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=69.88 E-value=26 Score=30.24 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=34.0
Q ss_pred ccCCCCeEeeecchhhhhhc-----cC--Cc-eEEEEeCCCCcEEEEEeecCeecc
Q 017011 129 EGFEIPATYVAIQAVLSLYA-----SG--RT-TGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~-----~g--~~-~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+.+++| |.+.++.-|++++ .+ .. +.++|-+|.+ +-...|.||..+.
T Consensus 112 ~~~~~p-V~v~NDanaaalaE~~~g~~~~~~~~~~~l~~GtG-IG~giv~~G~l~~ 165 (267)
T 1woq_A 112 ARLGRP-VEVINDADAAGLAEARYGAGAGVKGTVLVITLGTG-IGSAFIFDGKLVP 165 (267)
T ss_dssp HHHTSC-EEEEEHHHHHHHHHHHHSTTTTCCSEEEEEEESSS-EEEEEEETTEEET
T ss_pred HHHCCC-EEEeehhHHHHHHHHHhCCCCCCCCcEEEEEECcc-eEEEEEECCEEcc
Confidence 445777 8899999998876 22 23 5678899886 6777788998764
No 54
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=64.45 E-value=3.2 Score=36.63 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=36.6
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhh
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.|+|.||.+..+-|.+++++.+.+.... ..+++..+.....+...||+.++
T Consensus 236 ~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 236 CVVVGGSVGLAEGYLALVETYLAQEPAA-FHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp EEEEEHHHHTSTTHHHHHHHHHTTSCGG-GCCEEEECSCSSCHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhcCc-cCCEEEECCCCCchHHHHHHHHH
Confidence 5889999887788999999999875321 24455555445567788988765
No 55
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=59.54 E-value=8 Score=34.12 Aligned_cols=68 Identities=9% Similarity=0.035 Sum_probs=43.5
Q ss_pred EEEEcCCCCChhhHHHHHHHhhccCCC-CeEeeecchhhhhhcc-CCceEEEEeCCCCcEEEEEeecCeec
Q 017011 107 VLLTEPPLNPKINREKMVEIMFEGFEI-PATYVAIQAVLSLYAS-GRTTGIVMDSGEGVTHVVPIYEGYAL 175 (379)
Q Consensus 107 vvl~~~~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~~-g~~~~lVVDiG~~~t~v~pv~dG~~~ 175 (379)
+.+..|-.. ......+.+.+-+.++. ..+.+.++.-+++++. +..++++|=+|.+..-...+.+|...
T Consensus 61 igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge~g~~~~v~v~~GTGi~g~gi~~~G~~~ 130 (291)
T 1zxo_A 61 VYFYGAGCT-PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGLCGQKAGIACILGTGSNSCFYNGKEIVS 130 (291)
T ss_dssp CEEECTTCC-TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHTTTTSCBEEEEESSSEEEEEECSSSEEE
T ss_pred EEEEcCCCC-HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhhcCCCCcEEEEeCCChheEEECCCCcEE
Confidence 455555433 22112344444445664 3488999999999864 67788888899887555556788775
No 56
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=59.29 E-value=14 Score=33.23 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=33.7
Q ss_pred CCCCeEeeecchhhhhhcc-------CCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 131 FEIPATYVAIQAVLSLYAS-------GRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 131 ~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+++| |.+.++.-+++++- +..+.++|-+|.+ +-...|.+|..+.
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~ 181 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIH 181 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEec
Confidence 4677 78899998888752 4568999999987 5566778888764
No 57
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=57.54 E-value=10 Score=35.08 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=47.7
Q ss_pred cCeEeecCCCCCCC-HHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccccccc-----ccccHHHHhhcCCc
Q 017011 299 GNVVLSGGTSLIPG-LPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLSTFQQ-----MWITKEDYMESGPS 372 (379)
Q Consensus 299 ~nIil~GG~s~i~G-~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~-----~~itr~ey~e~G~~ 372 (379)
+.|+|+||.+..+- |.+++++.+.... .+.|........+...||+.++.-..-.. ..--|+.|+..+..
T Consensus 297 ~~IvlgGgi~~~~~~l~~~i~~~l~~~~----~~~i~~~~~~~~a~~~GAa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (381)
T 1saz_A 297 DFIVLTGGLAHEKEFLVPWITKRVSFIA----PVLVFPGSNEEKALALSALRVLRGEEKPKNYSEESRRWRERYDSYLDG 372 (381)
T ss_dssp SEEEEEEGGGGCTTTHHHHHHHHHTTTS----CEEEEEBCCHHHHHHHHHHHHHTTSSCCEEHHHHHHHHHHHHHHHTGG
T ss_pred CEEEEeCcCccChHHHHHHHHHHHHhhc----CeEEEecCcchhHHHHHHHHHHcCCcccccchhHhHHHHHHHHhhhhh
Confidence 36999999987666 8899999998764 34555444334577888887765432111 11235667777777
Q ss_pred cccc
Q 017011 373 VVHM 376 (379)
Q Consensus 373 ~~~~ 376 (379)
+++.
T Consensus 373 ~~~~ 376 (381)
T 1saz_A 373 ILRH 376 (381)
T ss_dssp GCC-
T ss_pred hhhc
Confidence 7654
No 58
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=55.99 E-value=79 Score=27.47 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=36.9
Q ss_pred cEEEEcCCCCChhhHHHHHHHhhccCCCCeEeeecchhhhhhcc-CCceEEEEeCCCCc
Q 017011 106 PVLLTEPPLNPKINREKMVEIMFEGFEIPATYVAIQAVLSLYAS-GRTTGIVMDSGEGV 163 (379)
Q Consensus 106 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-g~~~~lVVDiG~~~ 163 (379)
.+-+..|-..+......+.+.+-+ ++. .+.+.++.-+++++. ...+.++|-+|.+.
T Consensus 62 ~igi~~~G~~~~~~~~~l~~~l~~-~~~-pv~v~ND~~aaa~~e~~~~~~v~l~~GTG~ 118 (299)
T 2e2o_A 62 VVGMGVAGLDSKFDWENFTPLASL-IAP-KVIIQHDGVIALFAETLGEPGVVVIAGTGS 118 (299)
T ss_dssp EEEEEETTCCSHHHHHHHHHHHTT-SSS-EEEEEEHHHHHHHHHHTTSCEEEEEESSSE
T ss_pred EEEEEcCCCCchhHHHHHHHHHHh-CCC-CEEEeCcHHHHHhhccCCCCeEEEEecCCE
Confidence 566777766333333344444434 665 477889998888865 35788999999883
No 59
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=53.47 E-value=57 Score=29.74 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=34.6
Q ss_pred ccCCCCeEeeecchhhhhhcc---C--CceEEEEeCCCCcEEEEEeecCeeccc
Q 017011 129 EGFEIPATYVAIQAVLSLYAS---G--RTTGIVMDSGEGVTHVVPIYEGYALPH 177 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~~---g--~~~~lVVDiG~~~t~v~pv~dG~~~~~ 177 (379)
+.+++| |.+.++.-+++++- | ..+.++|-+|.+ +-...|.+|..+..
T Consensus 186 ~~~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~GtG-iG~giv~~G~l~~G 237 (380)
T 2hoe_A 186 EKYGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGKG-IGAGIIIDGELYRG 237 (380)
T ss_dssp HHHCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSS-CEEEEEETTEECCC
T ss_pred HHhCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCCc-eEEEEEECCEEecc
Confidence 345776 78999999888752 3 378999999987 45666778887643
No 60
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.98 E-value=6.7 Score=36.18 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=35.0
Q ss_pred CeEeecCCCCC-CCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGGTSLI-PGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG~s~i-~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.|+|.||.+.. +-|.+++++.+.+.......++|..+.....+...||+.++-
T Consensus 317 ~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 317 KIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp EEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred EEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 58888888764 667788888887664322344555444445577889887653
No 61
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=49.78 E-value=10 Score=33.76 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCHHHHHhhhcCeEeecCCCCCCCHHHHHHHHHhhcCCCC---------ceEEEECCCCCccceeehhh
Q 017011 278 AHEILVRAIMRSDMDVRREMYGNVVLSGGTSLIPGLPDRLAKELCNLASPG---------VGVRVVAPPQRLHSVWIGGS 348 (379)
Q Consensus 278 l~~~i~~~i~~~~~~~r~~l~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~---------~~i~v~~~~~~~~~~w~Gas 348 (379)
|...|...+.-++++ .|||-||.+..+.|-+.+++.+.+.+... .++.|..+...+.+...||+
T Consensus 212 La~~i~nl~~~ldPe-------~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa 284 (302)
T 3epq_A 212 IAQALAQYILILAPX-------XIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTL 284 (302)
T ss_dssp HHHHHHHHHHHTCCS-------CEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCch-------hhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHHH
Confidence 445555555555554 68998988887778888888877654211 12345555555667888988
Q ss_pred hhhc
Q 017011 349 ILAS 352 (379)
Q Consensus 349 i~a~ 352 (379)
.++-
T Consensus 285 ~l~~ 288 (302)
T 3epq_A 285 VLAH 288 (302)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 62
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=45.35 E-value=1.3e+02 Score=27.31 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCCeEeeecchh---------hhhh-----------------c------cCC--c--eEEEEeCCCCcEE
Q 017011 122 KMVEIMFEGFEIPATYVAIQAV---------LSLY-----------------A------SGR--T--TGIVMDSGEGVTH 165 (379)
Q Consensus 122 ~l~~~lfe~~~~~~v~~~~~~~---------~a~~-----------------~------~g~--~--~~lVVDiG~~~t~ 165 (379)
.+.+.+-+.+++|.+ +.++.- ++++ + .++ . +.+++-+|.+. .
T Consensus 111 ~l~~~l~~~~~~Pv~-v~NDan~~~~~~~a~aaalp~~~r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtGi-G 188 (381)
T 1saz_A 111 IIAHRFSSETGVPAY-VVDPVVVDEMEDVARVSGHPNYQRKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGI-S 188 (381)
T ss_dssp HHHHHHHHHHCCCEE-EESCTTBCCCCGGGTBCSSTTCBCCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSE-E
T ss_pred HHHHHHHHhcCCCEE-EeCCCccccCcHHHHHcCCcchhhhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCCc-E
Confidence 344445566788864 778776 5555 2 233 4 88999998765 6
Q ss_pred EEEeecCeeccc
Q 017011 166 VVPIYEGYALPH 177 (379)
Q Consensus 166 v~pv~dG~~~~~ 177 (379)
...|.+|..+..
T Consensus 189 ~g~i~~G~~~~G 200 (381)
T 1saz_A 189 IAAHRKGRVIDV 200 (381)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEECCEEEEe
Confidence 666779987743
No 63
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=41.60 E-value=17 Score=34.58 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=40.8
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCC------CceEEEECCCCCccceeehhhhhhccc
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASP------GVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~------~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.|.+-||...-|+|.+++++.+..+++. ..+|.+... ...+-+||+++|.+.
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~---~dgsg~GAAl~aa~~ 443 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPA---IDGXGAASXVIXSIA 443 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEEC---CCTTTHHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEEC---CCchhhhHHHHHHHH
Confidence 4778888877999999999999988754 336777665 346889999988865
No 64
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=40.06 E-value=2.1e+02 Score=25.87 Aligned_cols=133 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred ccCcCCCCcEEEeCCCceEEEEecCCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeee-eccccCCccc
Q 017011 3 VEDLYEFRSIVCDSGSGSVKTGFAGDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRL-SHPVNRGMVR 81 (379)
Q Consensus 3 ~~~~~~~~~vviD~Gs~~~k~G~~ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~-~~p~~~g~i~ 81 (379)
+...+....+.||+|..+++++... ..-... .. +.|....
T Consensus 3 ~~n~d~~~~lgiDIGgt~i~~~l~d-~G~il~-----------------------------------~~~~~~~~~~--- 43 (366)
T 3mcp_A 3 MYTNDNRIVMTLDAGGTNFVFSAIQ-GGKEIA-----------------------------------DPVVLPACAD--- 43 (366)
T ss_dssp TTTTCCCEEEEEECSSSEEEEEEEE-TTEECS-----------------------------------CCEEEECCTT---
T ss_pred cCCCCCCEEEEEEECcceEEEEEEE-CCEEEE-----------------------------------EEEEEECCCC---
Q ss_pred CHHHHHHHHHH---HHhhhccCCCCCCcEEEEcC-------------CCCChhh-HHHHHHHhhccCCCCeEeeecchhh
Q 017011 82 DWDAMERLWEH---IFDKELRVTIEEHPVLLTEP-------------PLNPKIN-REKMVEIMFEGFEIPATYVAIQAVL 144 (379)
Q Consensus 82 ~~~~~~~~l~~---~~~~~l~~~~~~~~vvl~~~-------------~~~~~~~-~~~l~~~lfe~~~~~~v~~~~~~~~ 144 (379)
+.+.+-+.+.. .+.+.+. .+-..+-+..| +..+.-. .-.+.+.+-+.+++| |.+.++.-|
T Consensus 44 ~~~~~l~~i~~~~~~i~~~~~--~~i~gIGIavPG~Vd~~~G~i~~~~nlp~w~~~~~l~~~L~~~~g~P-V~veNDana 120 (366)
T 3mcp_A 44 CLDKCLGNLVEGFKAIQAGLP--EAPVAISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIP-VFINNDGSL 120 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS--SCCCEEEEECCSSEETTTTEECCCTTCGGGTTCBCHHHHHHHHHCSC-EEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhh--cCCeEEEEEecceEeCCCCEEEeCCCcccccCCCCHHHHHHHHHCCC-EEEechhhH
Q ss_pred hhhc--------------------cCCceEEEEeCCCCcEEEEEeecCeecccc
Q 017011 145 SLYA--------------------SGRTTGIVMDSGEGVTHVVPIYEGYALPHA 178 (379)
Q Consensus 145 a~~~--------------------~g~~~~lVVDiG~~~t~v~pv~dG~~~~~~ 178 (379)
++++ -+..+.++|-+| ..+-...|.+|.++...
T Consensus 121 aAlgE~~~G~~p~~~~~l~~~g~~~~~~~~v~l~lG-tGIG~givi~G~l~~G~ 173 (366)
T 3mcp_A 121 FAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLG-TGFGAGVVIDGELLRGD 173 (366)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTTCCCCCCEEEEEEES-SSEEEEEEETTEECCCT
T ss_pred HHHHHHHhCCCcccccccccccccCCCCcEEEEEEC-CcceEEEEECCEEecCC
No 65
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=39.94 E-value=19 Score=32.07 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=38.2
Q ss_pred CeEeecCCCCCCC-HHHHHHHHHhhcCCC---CceEEEECCCCCccceeehhhhhhccccccc
Q 017011 300 NVVLSGGTSLIPG-LPDRLAKELCNLASP---GVGVRVVAPPQRLHSVWIGGSILASLSTFQQ 358 (379)
Q Consensus 300 nIil~GG~s~i~G-~~~rl~~eL~~~~~~---~~~i~v~~~~~~~~~~w~Gasi~a~l~~~~~ 358 (379)
.|||-||.+..+. +.++|.+.+++.+.. ..++++..+.....+..+||+.++--.-+.+
T Consensus 242 ~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~~~~~~ 304 (310)
T 3htv_A 242 AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQ 304 (310)
T ss_dssp EEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHHHHCC-
T ss_pred EEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHHHhhcc
Confidence 4888888887754 467777777765521 1245666665556788899998775444433
No 66
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=35.59 E-value=18 Score=34.52 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=32.7
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|.++||+|+=+-+.+.+.+-+.. +|.+ +...+.++-+||+++|...
T Consensus 387 ~~~i~~~GG~a~s~~~~Qi~Adv~g~------pV~~--~~~~e~~~alGAA~lA~~~ 435 (484)
T 2itm_A 387 PQSVTLIGGGARSEYWRQMLADISGQ------QLDY--RTGGDVGPALGAARLAQIA 435 (484)
T ss_dssp CSCEEEESGGGCCHHHHHHHHHHHCC------CEEE--ESCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEeccccCHHHHHHHHHHhCC------eEEe--CCCCCcccHHHHHHHHHHH
Confidence 35799999999987776666666532 3333 3333334788999888654
No 67
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=32.86 E-value=15 Score=33.69 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred cCeEeecCCCCCCCHHHHHHHHH
Q 017011 299 GNVVLSGGTSLIPGLPDRLAKEL 321 (379)
Q Consensus 299 ~nIil~GG~s~i~G~~~rl~~eL 321 (379)
..|++|||++.=|-|.+||++.|
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHC
T ss_pred ceEEEECCccCcHHHHHHHHHhC
Confidence 57999999999999999998777
No 68
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=31.78 E-value=1.3e+02 Score=28.59 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred cCcCCCCcEEEeCCCceEEEEec---CCCCCCCCCCceeEecCCCCccccCCCcceeecchhhhccCCeeeeccccCCcc
Q 017011 4 EDLYEFRSIVCDSGSGSVKTGFA---GDDAPCVVFPSLIGQPRNKNSMIGIGQKDMYFGDEAQAKRGVLRLSHPVNRGMV 80 (379)
Q Consensus 4 ~~~~~~~~vviD~Gs~~~k~G~~---ge~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~a~~~~~~~~~~~p~~~g~i 80 (379)
...+....+.||+|.+++|+++. |+...... .-++++....-
T Consensus 75 ~G~E~G~~LalDlGGTn~Rv~~V~l~g~~~~~~~-----------------------------------~~~~~Ip~~~~ 119 (485)
T 3o8m_A 75 TGKETGDFLALDLGGTNLRVVLVKLGGNHDFDTT-----------------------------------QNKYRLPDHLR 119 (485)
T ss_dssp CSCCEEEEEEEEESSSEEEEEEEEEESSSCEEEE-----------------------------------EEEEECCTTGG
T ss_pred CCCcceEEEEEEecCCeEEEEEEEECCCCceEEE-----------------------------------EEEEecCchhc
Q ss_pred cC-HHHHHHHHHHHHhhhccCC-----CCCCcEEEEcC-------------CCCC---------hhhHHHHHHHhhccCC
Q 017011 81 RD-WDAMERLWEHIFDKELRVT-----IEEHPVLLTEP-------------PLNP---------KINREKMVEIMFEGFE 132 (379)
Q Consensus 81 ~~-~~~~~~~l~~~~~~~l~~~-----~~~~~vvl~~~-------------~~~~---------~~~~~~l~~~lfe~~~ 132 (379)
.. -+.+...+..++.+.+... ....++=++-+ ..+. ......+++..+++.+
T Consensus 120 ~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~l~lGftfSfP~~q~~i~~g~li~wtKGF~i~~~~G~dv~~~L~~al~r~g 199 (485)
T 3o8m_A 120 TGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLN 199 (485)
T ss_dssp GSBHHHHHHHHHHHHHHHHHHHCTTCCSSCEEEEEEECSCEECSBTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeeeEEEcccCCEEEeeccccccCCCcCCccHHHHHHHHHHhcC
Q ss_pred CCe--Eeeecchhhhhhcc-----CCceEEEEeCCCCcEEEEEe
Q 017011 133 IPA--TYVAIQAVLSLYAS-----GRTTGIVMDSGEGVTHVVPI 169 (379)
Q Consensus 133 ~~~--v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~pv 169 (379)
++. +.++++.++++++. ...-|+++--|.+.+.+.++
T Consensus 200 l~v~v~aivNDtv~tll~~~y~~~~~~iglIlGTG~N~~y~e~~ 243 (485)
T 3o8m_A 200 IPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVV 243 (485)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEG
T ss_pred CCceEEEEEEcHHHHHHHHhhCCCCcEEEEEEecCcceEEEeec
No 69
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=30.89 E-value=36 Score=32.26 Aligned_cols=22 Identities=23% Similarity=0.009 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCcEEEEEeecCe
Q 017011 152 TTGIVMDSGEGVTHVVPIYEGY 173 (379)
Q Consensus 152 ~~~lVVDiG~~~t~v~pv~dG~ 173 (379)
.+..|+|+|+++|.|+-..+..
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4678999999999999775553
No 70
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=30.58 E-value=30 Score=32.72 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.9
Q ss_pred eEeecCCC-CCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 301 VVLSGGTS-LIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 301 Iil~GG~s-~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
|.+-||.. .-|.|.+++++.+.+++....++.+... ..++.+||+++|...
T Consensus 396 V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~l~---~dgs~iGAAllA~~~ 447 (451)
T 1bdg_A 396 VGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLS---EDGSGKGAAAIAASC 447 (451)
T ss_dssp EEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEEEC---TTHHHHHHHHHHTTC
T ss_pred EEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEEEC---CCccHHHHHHHHHHH
Confidence 44445553 6899999999999887644446666533 568999999988764
No 71
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=30.10 E-value=13 Score=32.74 Aligned_cols=45 Identities=27% Similarity=0.121 Sum_probs=28.5
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhc
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILAS 352 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~ 352 (379)
.|+|.||.+..+-|.+++++.+.+. .+.. +. ...++..||+.++.
T Consensus 242 ~IvlgGgv~~~~~~~~~l~~~~~~~-----~i~~--~~-~~~~~~~GAa~la~ 286 (299)
T 2e2o_A 242 KVYLKGGMFRSNIYHKFFTLYLEKE-----GIIS--DL-GKRSPEIGAVILAY 286 (299)
T ss_dssp EEEEESGGGGSHHHHHHHHHHHHHT-----TCEE--EC-CSCCHHHHHHHHHH
T ss_pred EEEEECCccCcHHHHHHHHHHCCCC-----eEec--cC-CCCChHHHHHHHHH
Confidence 5888888876655666666666543 2222 22 34567789887764
No 72
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=29.55 E-value=18 Score=33.14 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.4
Q ss_pred cCeEeecCCCCCCCHHHHHHHHH
Q 017011 299 GNVVLSGGTSLIPGLPDRLAKEL 321 (379)
Q Consensus 299 ~nIil~GG~s~i~G~~~rl~~eL 321 (379)
..|++|||++.=|-|.+||++.|
T Consensus 291 ~~v~vcGGGa~N~~Lm~~L~~~l 313 (370)
T 3cqy_A 291 GELFVCGGGAFNAELMQRLAALL 313 (370)
T ss_dssp EEEEEESGGGGCHHHHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHhC
Confidence 36999999999999999998776
No 73
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=27.33 E-value=13 Score=34.15 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCCeEeeecchhhhhhc----------------c--------------C----CceEEEEeCCCCcEEEEEeecCeecc
Q 017011 131 FEIPATYVAIQAVLSLYA----------------S--------------G----RTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 131 ~~~~~v~~~~~~~~a~~~----------------~--------------g----~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+++..|.+.++.-+++++ . | ..+.++|-+|.+. -...|.+|.+..
T Consensus 127 ~~~~pv~v~NDa~aaalge~~l~~~~~~~~~~~E~~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTGi-G~gii~~g~l~~ 205 (373)
T 2q2r_A 127 FPPGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGL-GSSLIYYNPPMN 205 (373)
T ss_dssp SCTTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSSCTTSSCCSSCEEEEEESSSE-EEEEEEECC---
T ss_pred cCCCCEEEEccHhHHhccccccChhhhccccchhhcccccccccccCCCcCcCCCCCEEEEEeCCce-eEEEEecCcccC
Confidence 677568899999998888 2 3 2578999999874 455566776653
No 74
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=25.81 E-value=21 Score=37.14 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=39.6
Q ss_pred CeEeecCCCCC-CCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 300 NVVLSGGTSLI-PGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 300 nIil~GG~s~i-~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.|++-||.+.. |.|.+++++.+.++++. .++++... +.++-+||+++|...
T Consensus 409 ~IvigGgV~~~~~~~~~~l~~~l~~~~~~-~~~~i~~a---~dgs~~GAA~laa~~ 460 (917)
T 1cza_N 409 TVGVDGSLYKTHPQYSRRFHKTLRRLVPD-SDVRFLLS---ESGSGKGAAMVTAVA 460 (917)
T ss_dssp EEEEECHHHHHCSSHHHHHHHHHHHHCTT-EEEEEEEC---TTCHHHHHHHHHHHH
T ss_pred EEEECCchhhccHHHHHHHHHHHHHhcCC-CceEEEEe---ccchHHHHHHHHHhH
Confidence 57777777665 99999999999988754 46777655 567889999988764
No 75
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=25.72 E-value=25 Score=33.56 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=33.0
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|+++||+|+=+-+.+.+.+-+.. +|.+... ..++-+||+++|...
T Consensus 394 ~~~i~~~GG~a~s~~~~Qi~Adv~g~------pV~~~~~---~e~~alGaA~lA~~~ 441 (497)
T 2zf5_O 394 IKELRVDGGATANDFLMQFQADILNR------KVIRPVV---KETTALGAAYLAGLA 441 (497)
T ss_dssp CCCEEEESGGGGCHHHHHHHHHHHTS------CEEEESC---SCHHHHHHHHHHHHH
T ss_pred cceEEEeCccccCHHHHHHHHhhcCC------eEEEcCC---CcchHHHHHHHHHHH
Confidence 46799999999987777666666532 4444333 236788999988653
No 76
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=25.10 E-value=31 Score=30.97 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=28.7
Q ss_pred CeEeecCCCCCCCHHHHHHHHHhhcCC-CCceEEEECCCCCccceeehhhhhh
Q 017011 300 NVVLSGGTSLIPGLPDRLAKELCNLAS-PGVGVRVVAPPQRLHSVWIGGSILA 351 (379)
Q Consensus 300 nIil~GG~s~i~G~~~rl~~eL~~~~~-~~~~i~v~~~~~~~~~~w~Gasi~a 351 (379)
.|+|.||.+ +-|.+.+++.++.... ....++|..+...+ ++..||+.++
T Consensus 287 ~IvlgG~i~--~~~~~~l~~~l~~~~~~~~~~~~i~~s~~~~-~~~~GAa~l~ 336 (343)
T 2yhw_A 287 LVILSGVLA--SHYIHIVKDVIRQQALSSVQDVDVVVSDLVD-PALLGAASMV 336 (343)
T ss_dssp EEEEESTTH--HHHHHHHHHHHHHHSCGGGTTCEEEECCCSC-HHHHHHHHHH
T ss_pred EEEEeCCcH--HHHHHHHHHHHHHhcccccCCcEEEEccCCC-chHHHHHHHH
Confidence 588888775 5577777777766432 11133444333323 4678888765
No 77
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=24.92 E-value=1.5e+02 Score=25.50 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=32.3
Q ss_pred EEEEeCCCCcEEEEEeecCeecccceEEe-cccHHHHHHHHHHHHhhCC
Q 017011 154 GIVMDSGEGVTHVVPIYEGYALPHAIQRL-ELAGKDLTDYLTTNLTKDG 201 (379)
Q Consensus 154 ~lVVDiG~~~t~v~pv~dG~~~~~~~~~~-~~GG~~i~~~l~~~l~~~~ 201 (379)
-|+||+|...+....+-++..+....... ....+.+...+.+++...+
T Consensus 4 lL~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~ 52 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENN 52 (266)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 48999999999998887776653332222 2456666667777776554
No 78
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=24.21 E-value=27 Score=33.56 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=33.5
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEE-ECCCCCccceeehhhhhhccc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRV-VAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v-~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.+.|.++||+|+=+-+.+.+.+-+ .+.| ..+ .+..++-+||+++|...
T Consensus 403 ~~~i~~~GGga~s~~~~Qi~ADv~--------g~pV~~~~-~~~e~~alGaA~lA~~a 451 (511)
T 3hz6_A 403 VGLLKVVGGGARSEAWLRMIADNL--------NVSLLVKP-DAHLHPLRGLAALAAVE 451 (511)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHH--------TCEEEECC-CGGGHHHHHHHHHHHHH
T ss_pred CCEEEEeCchhcCHHHHHHHHHHH--------CCeeEEec-CCCCchHHHHHHHHHHH
Confidence 677999999999876666555555 3345 333 24567789999988754
No 79
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=22.44 E-value=1.1e+02 Score=26.33 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=34.3
Q ss_pred ccCCCCeEeeecchhhhhhcc-------CCceEEEEeCCCCcEEEEEeecCeecc
Q 017011 129 EGFEIPATYVAIQAVLSLYAS-------GRTTGIVMDSGEGVTHVVPIYEGYALP 176 (379)
Q Consensus 129 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~pv~dG~~~~ 176 (379)
+.+++| |.+.++.-+++++- +. +.++|.+|.+ +-...+.+|..+.
T Consensus 94 ~~~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtG-iG~gii~~G~l~~ 145 (289)
T 2aa4_A 94 QLTNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTG-VGGGVVSGCKLLT 145 (289)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSS-EEEEEEETTEEEC
T ss_pred HHHCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCcc-EEEEEEECCEEee
Confidence 345777 78999999988752 34 8999999988 5667778998774
No 80
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=22.03 E-value=37 Score=30.43 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.5
Q ss_pred hcCeEeecCCCCCCCHHHHHHHHHhhc
Q 017011 298 YGNVVLSGGTSLIPGLPDRLAKELCNL 324 (379)
Q Consensus 298 ~~nIil~GG~s~i~G~~~rl~~eL~~~ 324 (379)
.++|+++||.++=..+.++|.+.+...
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~~ 271 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTEDR 271 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999988643
No 81
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=21.88 E-value=21 Score=18.87 Aligned_cols=15 Identities=13% Similarity=0.384 Sum_probs=11.8
Q ss_pred cccccHHHHhhcCCc
Q 017011 358 QMWITKEDYMESGPS 372 (379)
Q Consensus 358 ~~~itr~ey~e~G~~ 372 (379)
..-+|-++|+++|.-
T Consensus 8 Gi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 8 GIKLSGAQYQQHGRA 22 (26)
T ss_dssp TGGGHHHHCSCSSSC
T ss_pred eeEecHHHHHHHhHH
Confidence 356889999999973
No 82
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=20.56 E-value=47 Score=31.28 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=37.1
Q ss_pred eEeecCCC--CCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 301 VVLSGGTS--LIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 301 Iil~GG~s--~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
.|-+-|+- ..|+|++++++.|+.+.|. .+|.+..+. ..+=+||+++|...
T Consensus 386 ~VgvDGsvy~~~P~f~~~l~~~l~~l~~~-~~v~~~~s~---DGSg~GAAl~AA~a 437 (445)
T 3hm8_A 386 SVGVDGTLYKLHPRFSSLVAATVRELAPR-CVVTFLQSE---DGSGKGAALVTAVA 437 (445)
T ss_dssp EEEEECHHHHHCTTHHHHHHHHHHHHCTT-EEEEEEECS---SCHHHHHHHHHHHH
T ss_pred EEEEeceehccChhHHHHHHHHHHHhCCC-CcEEEEECC---CCchHHHHHHHHHH
Confidence 34444443 4899999999999999875 367776663 45789999998764
No 83
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.04 E-value=48 Score=31.60 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=32.9
Q ss_pred cCeEeecCCCCCCCHHHHHHHHHhhcCCCCceEEEECCCCCccceeehhhhhhccc
Q 017011 299 GNVVLSGGTSLIPGLPDRLAKELCNLASPGVGVRVVAPPQRLHSVWIGGSILASLS 354 (379)
Q Consensus 299 ~nIil~GG~s~i~G~~~rl~~eL~~~~~~~~~i~v~~~~~~~~~~w~Gasi~a~l~ 354 (379)
+.|+++||+|+=+-+.+.+.+-+.. +|.+... ..++-+||+++|...
T Consensus 400 ~~i~~~GG~a~n~~~~q~~Adv~g~------pV~~~~~---~e~~alGaA~la~~a 446 (495)
T 2dpn_A 400 KVLKADGGMAQNRLFLKIQADLLGV------PVAVPEV---TETTALGAALMAGVG 446 (495)
T ss_dssp CCEEEESGGGGCHHHHHHHHHHHTS------CEEEESC---SCHHHHHHHHHHHHH
T ss_pred cEEEEecccccCHHHHHHHHHHhCC------eeEecCC---cccHHHHHHHHHHhh
Confidence 5699999999988777766666632 4444332 236788999988654
Done!