Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>017012
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGL
SKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIG
YLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITI
SSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAA
QSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILD
GLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVF
ILAGQLTLTGTSFLLLGLL

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017012
        (379 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2153489 - symbol:AT5G05310 species:3702 "Arabi...  1075  9.0e-109  1


>TAIR|locus:2153489 [details] [associations]
            symbol:AT5G05310 species:3702 "Arabidopsis thaliana"
            [GO:0005471 "ATP:ADP antiporter activity" evidence=IEA] [GO:0005524
            "ATP binding" evidence=IEA] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0006810 "transport" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0016021 "integral to membrane"
            evidence=IEA] InterPro:IPR004667 Pfam:PF03219 GO:GO:0016021
            GO:GO:0005524 EMBL:CP002688 GO:GO:0005471 KO:K03301 IPI:IPI00527399
            RefSeq:NP_850772.1 UniGene:At.43781 ProteinModelPortal:F4JZA0
            PRIDE:F4JZA0 EnsemblPlants:AT5G05310.3 GeneID:830413
            KEGG:ath:AT5G05310 OMA:TYVVTRP PhylomeDB:F4JZA0 ArrayExpress:F4JZA0
            Uniprot:F4JZA0
        Length = 511

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 226/359 (62%), Positives = 262/359 (72%)

Query:     8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
             ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct:     3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query:    68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRXXXXXXXXXXXXXXXXXIGYLSKLES 127
             VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHR                 +   S  ES
Sbjct:    63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLVLCFL------LWMASPTES 116

Query:   128 LDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARV 187
                 S +A E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ ISSTWAR+
Sbjct:   117 N---SKDAVEAASGLTNDGANA-ATGWDNHGWFYISVRVGFFLWVALLNLVAISSTWARI 172

Query:   188 IDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIY 247
             IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA  A++GPYLLLFAA LME AAQSSKGI 
Sbjct:   173 IDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQSSKGIT 232

Query:   248 KEIXXXXXXXXXXXKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWAILDGLR 303
              +I             D+D  R      T+P   + KV SP+S  S  +P  WAILDG+R
Sbjct:   233 NDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWAILDGMR 292

Query:   304 LIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFIL 362
             LI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+AVFIL
Sbjct:   293 LILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFVAVFIL 351


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      379       335   0.00092  116 3  11 22  0.46    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  193 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.83u 0.12s 24.95t   Elapsed:  00:00:01
  Total cpu time:  24.83u 0.12s 24.95t   Elapsed:  00:00:01
  Start:  Fri May 10 07:20:55 2013   End:  Fri May 10 07:20:56 2013

Back to top