BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017012
         (379 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P75417|Y364_MYCPN Uncharacterized protein MPN_364 OS=Mycoplasma pneumoniae (strain
           ATCC 29342 / M129) GN=MPN_364 PE=3 SV=1
          Length = 677

 Score = 32.3 bits (72), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 26/112 (23%)

Query: 133 SNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMG----------FFLWVALLNLITISS 182
           SN  +D KA  D+   A    WGD    Y  V  G          F  W  LL+    S+
Sbjct: 137 SNTTKDGKATSDE---AIKKTWGD----YQKVENGLKGYTFKASVFENWHELLDF---SA 186

Query: 183 TWAR---VIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLF 231
             AR    I   +++ G+ + G +G  +T   LF S+FAAG    G Y   F
Sbjct: 187 RIARSFTNIHTKETKKGTDIQGVLGIDSTPNALFTSVFAAGG---GNYDNFF 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,692,562
Number of Sequences: 539616
Number of extensions: 4777160
Number of successful extensions: 19323
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 19318
Number of HSP's gapped (non-prelim): 17
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)