Query 017012
Match_columns 379
No_of_seqs 118 out of 295
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.4 5.7E-10 1.9E-14 109.3 31.0 269 26-377 24-323 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.3 6E-10 2E-14 109.4 26.2 281 30-376 30-315 (451)
3 2gfp_A EMRD, multidrug resista 99.1 8.3E-10 2.9E-14 106.4 15.4 155 31-233 3-161 (375)
4 4aps_A DI-OR tripeptide H+ sym 98.8 5.3E-07 1.8E-11 89.9 22.7 166 29-242 14-192 (491)
5 2cfq_A Lactose permease; trans 98.6 6.1E-07 2.1E-11 88.5 16.7 75 28-104 7-84 (417)
6 2xut_A Proton/peptide symporte 98.2 2.9E-05 9.8E-10 78.0 15.3 166 29-241 13-193 (524)
7 1pw4_A Glycerol-3-phosphate tr 98.1 7.6E-05 2.6E-09 72.8 16.6 175 28-247 252-434 (451)
8 2cfq_A Lactose permease; trans 97.8 0.00024 8E-09 69.8 13.8 61 181-241 331-394 (417)
9 4gc0_A D-xylose-proton symport 97.5 0.031 1E-06 55.0 24.5 121 71-222 65-186 (491)
10 3o7q_A L-fucose-proton symport 97.5 0.0018 6.2E-08 62.7 15.1 146 29-225 259-409 (438)
11 4gc0_A D-xylose-proton symport 97.4 0.0066 2.2E-07 59.9 17.5 146 33-221 282-429 (491)
12 4aps_A DI-OR tripeptide H+ sym 97.2 0.0013 4.4E-08 65.1 10.2 46 180-225 404-449 (491)
13 2gfp_A EMRD, multidrug resista 95.5 0.014 4.7E-07 55.5 5.3 45 179-224 308-352 (375)
14 2xut_A Proton/peptide symporte 90.6 0.18 6E-06 50.1 4.2 51 172-222 415-465 (524)
15 1kf6_D Fumarate reductase 13 k 34.1 18 0.00062 29.5 1.9 23 197-219 12-34 (119)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.39 E-value=5.7e-10 Score=109.33 Aligned_cols=269 Identities=9% Similarity=-0.025 Sum_probs=163.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccchhhcccC--ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 017012 26 ETSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (379)
Q Consensus 26 E~~~~l~~~l~~F~il~~y~ilrpird~l~vs~G--ae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f 103 (379)
....+..+.+.+|+..+.+++.-|+-+.+.-..| .+++-++.........+..|+.|+++| |++||+++.+....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHHHH
Confidence 3445566666677777777777776665444443 445566666667788899999999999 999999998888777
Q ss_pred HHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 017012 104 SVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISST 183 (379)
Q Consensus 104 ~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slf 183 (379)
++..++++.... . . + .| .+. +.|. ...+.........
T Consensus 102 ~~~~~~~~~~~~-~-~------------------~--------------~~-----~l~-~~~~---l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 102 ALGAALFWPAAE-I-M------------------N--------------YT-----LFL-VGLF---IIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHHHHHH-T-T------------------C--------------HH-----HHH-HHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-c-c------------------c--------------HH-----HHH-HHHH---HHHhhHHHhhhhH
Confidence 766666543211 1 0 0 23 222 1122 2333334445566
Q ss_pred HHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH-HH-hH------------------------H--HHHHHHHH
Q 017012 184 WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FL-GP------------------------Y--LLLFAACL 235 (379)
Q Consensus 184 W~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~-g~------------------------~--lll~aa~l 235 (379)
-.+++|.++.+|+.+.+|+..++.++|.++|+.+++.+. .. +. + .+++.++.
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 218 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHH
Confidence 788999999999999999999999999999999988876 32 21 2 33332322
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHhchhHHHHH
Q 017012 236 MELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVS 315 (379)
Q Consensus 236 l~l~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~S~yL~~i~ 315 (379)
..+..... ...+..++. ++.+ . ++.+.+..+.++.++++|.+...+
T Consensus 219 ~~~~~~~~-~~~~~p~~~-------------~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 264 (438)
T 3o7q_A 219 VLLVALLI-MLTKFPALQ-------------SDNH---S-----------------DAKQGSFSASLSRLARIRHWRWAV 264 (438)
T ss_dssp HHHHHHHH-HHCCCCCCT-------------TTCC---C-----------------CSSTTSHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHH-HHHcCCccc-------------cccc---c-----------------cccccchhhhHHHHHhChHHHHHH
Confidence 22222221 111111100 0000 0 000113567788899999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 017012 316 LFLWLSAVVSSFFYFQKVTV-IAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 377 (379)
Q Consensus 316 ~~v~l~~~~~~lv~~~~~~~-v~~~~~~~~~~taf~G~~~~~~gv~~l~~qlf~t~~llrrlG 377 (379)
+..+++.............+ .++.+..+.+.. |.+....++..++.+. +.+++.+|+|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~-~~g~l~~r~~ 323 (438)
T 3o7q_A 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRF-TGTWLISRFA 323 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 77776666544444333444 556555444444 4555555666666555 4588888876
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=6e-10 Score=109.41 Aligned_cols=281 Identities=7% Similarity=-0.068 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhcc-cCccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 017012 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (379)
Q Consensus 30 ~l~~~l~~F~il~~y~ilrpird~l~vs-~Gae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~~~~l 108 (379)
+...++..|+.....+..-+.-..+.-+ .+.+.+.++.....+...+..|+.|+++| |++||+++.+....+++..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~~ 107 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHH--hcCchHHHHHHHHHHHHHHH
Confidence 3344444444444433333332222222 34566777777777888999999999999 99999998888777766666
Q ss_pred HHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017012 109 VFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVI 188 (379)
Q Consensus 109 lfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slfW~~~~ 188 (379)
++++..... . + .| .+. +..+..++..........++++
T Consensus 108 ~~~~~~~~~-~------------------~--------------~~-----~l~----~~~~l~G~~~~~~~~~~~~~i~ 145 (451)
T 1pw4_A 108 FMGFVPWAT-S------------------S--------------IA-----VMF----VLLFLCGWFQGMGWPPCGRTMV 145 (451)
T ss_dssp HHHHCHHHH-S------------------S--------------SS-----HHH----HHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHhhhhcc-c------------------c--------------HH-----HHH----HHHHHHHHHhhhccchHHHHHH
Confidence 665521101 0 0 23 222 1222233334455567788999
Q ss_pred hhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHh-H-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 017012 189 DVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-P-YLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADS 265 (379)
Q Consensus 189 di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-~-~lll~aa~ll~l~~~~~~~l~~~~~~~~~~~~p~~~~~~ 265 (379)
|.++.+|+.|.+|+..++.++|.++|+.+++.+. ..| . +.+++.+++..+...+.....+...+. ....
T Consensus 146 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 217 (451)
T 1pw4_A 146 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS--------CGLP 217 (451)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT--------TCCC
T ss_pred HHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh--------cCCC
Confidence 9999999999999999999999999999998865 556 4 234433333333333322222211110 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 017012 266 DPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG-LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSL 344 (379)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~~S~yL~~i~~~v~l~~~~~~lv~~~~~~~v~~~~~~~~ 344 (379)
++++ .++ + .+... +++++.+.+..+. .+.++++|.+..+++..++..............+.++.+..+.
T Consensus 218 -~~~~---~~~---~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 218 -PIEE---YKN---D--YPDDY-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp -SCTT---TCC---C----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred -Chhh---hcc---c--ccccc-hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 0000 000 0 00000 0000001112222 4677888988887777777666555554444445454444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 017012 345 GRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 376 (379)
Q Consensus 345 ~~taf~G~~~~~~gv~~l~~qlf~t~~llrrl 376 (379)
+.. |.+....++..++...+ .+++.+|+
T Consensus 288 ~~~---~~~~~~~~~~~~~~~~~-~g~l~~~~ 315 (451)
T 1pw4_A 288 DKS---SWAYFLYEYAGIPGTLL-CGWMSDKV 315 (451)
T ss_dssp HHH---HHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HHH---HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333 56666777777776665 47888887
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.12 E-value=8.3e-10 Score=106.42 Aligned_cols=155 Identities=11% Similarity=0.016 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhcccC--ccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 017012 31 LHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (379)
Q Consensus 31 l~~~l~~F~il~~y~ilrpird~l~vs~G--ae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~~~~l 108 (379)
+.+.+..|+...++.+.-|.-+.+.-+.| .++..++.........+..|+.|+++| |++||+++.+.....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD--RVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT--TSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHHHHH
Confidence 34455566777777777777666555544 444556666667788899999999999 99999998877777666655
Q ss_pred HHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017012 109 VFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVI 188 (379)
Q Consensus 109 lfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slfW~~~~ 188 (379)
++++.- + .| .+. +.+. ..............+++.
T Consensus 81 ~~~~~~--~-----------------------------------~~-----~l~-~~~~---l~g~~~~~~~~~~~~~~~ 114 (375)
T 2gfp_A 81 VAVTTS--S-----------------------------------LT-----VLI-AASA---MQGMGTGVGGVMARTLPR 114 (375)
T ss_dssp HHHHHH--H-----------------------------------HH-----HHH-HHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--c-----------------------------------HH-----HHH-HHHH---HHHHHHHhhhhhHHHHHH
Confidence 554421 1 12 111 1122 123334445567788899
Q ss_pred hhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHhH-HHHHHHH
Q 017012 189 DVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGP-YLLLFAA 233 (379)
Q Consensus 189 di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~-~lll~aa 233 (379)
|.++.+|+.|.+++...+.++|.++|+.+++.+. ..|. ..+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 115 DLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp HHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999998876 4453 3444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.82 E-value=5.3e-07 Score=89.88 Aligned_cols=166 Identities=10% Similarity=0.046 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhcc------cC--ccchhHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHHH
Q 017012 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS------LG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVLI 99 (379)
Q Consensus 29 ~~l~~~l~~F~il~~y~ilrpird~l~vs------~G--ae~lp~l~~~~~~~~ll~~~iy~~L~~~~r-~~r~rv~~~~ 99 (379)
.++...+..|+..++++...+.-...... .| .+...++.........+..++.|+++| | +|||+++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~~g~r~~~~~~ 91 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD--RIIGARPAVFWG 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHHH
Confidence 45555556666666666554433222221 23 344556666667788899999999999 9 8999998877
Q ss_pred HHHHHHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 017012 100 HRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLIT 179 (379)
Q Consensus 100 ~~~f~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~ 179 (379)
...+++..+++++ . . + .|. +++ .|+ ...+.....
T Consensus 92 ~~~~~~~~~~~~~----~-~------------------~--------------~~~----~~~--~~~---l~g~~~~~~ 125 (491)
T 4aps_A 92 GVLIMLGHIVLAL----P-F------------------G--------------ASA----LFG--SII---LIIIGTGFL 125 (491)
T ss_dssp HHHHHHHHHHHHS----C-C------------------S--------------TTH----HHH--HHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHH----h-h------------------h--------------HHH----HHH--HHH---HHHHHHHhc
Confidence 6665544444332 1 1 0 221 121 122 233334455
Q ss_pred HHHHHHHHHhhcCccch--hHHHHHHHHHHHHHHHHhHHHHHHHH-HHhH-HHHHHHHHHHHHHHHH
Q 017012 180 ISSTWARVIDVMDSESG--SRLFGFIGAGATLGQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQS 242 (379)
Q Consensus 180 ~slfW~~~~di~~~~ea--kR~fgligag~~lG~I~G~~l~~~la-~~g~-~lll~aa~ll~l~~~~ 242 (379)
.....++++|.++.+|+ .+.+++.+.+.++|.++||.+++.+. ..|. +.+.+.++...++...
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 66888999999999994 45788899999999999999999887 4554 3444444444444443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.65 E-value=6.1e-07 Score=88.55 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccchhhcc-c--CccchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 017012 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-L--GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (379)
Q Consensus 28 ~~~l~~~l~~F~il~~y~ilrpird~l~vs-~--Gae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~ 104 (379)
+++.......|+..+++...-|.-.....+ . ..++.-.+.......+.+..|+.|+++| |+||||++.+....++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD--r~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT--TSTTCCHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHH
Confidence 455566666677777777666664443332 2 3445666666667888999999999999 9999999877665543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.16 E-value=2.9e-05 Score=77.99 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhcc-cC--------ccchhHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Q 017012 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LG--------LSKLPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVL 98 (379)
Q Consensus 29 ~~l~~~l~~F~il~~y~ilrpird~l~vs-~G--------ae~lp~l~~~~~~~~ll~~~iy~~L~~~~r~-~r~rv~~~ 98 (379)
.++...+..|+..++++...+.-.....+ .| .+...++.......+.+..++.|+++| |+ +||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~~g~r~~~~~ 90 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD--RFFGKYNTILW 90 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT--TSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHH
Confidence 34455566667767766555544433322 33 444556666667788889999999999 99 99999877
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 017012 99 IHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 178 (379)
Q Consensus 99 ~~~~f~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~ 178 (379)
....+++..+++++. . . + .|. +++ .+. ...+....
T Consensus 91 ~~~~~~~~~~~~~~~--~--~------------------~--------------~~~----~~~--~~~---l~g~~~~~ 125 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF--E--H------------------S--------------VQG----FYT--GLF---LIALGSGG 125 (524)
T ss_dssp HHHHHHHHHHHHHHT--S--S------------------C--------------HHH----HHH--HHH---HHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--c--c------------------c--------------HHH----HHH--HHH---HHHHhccc
Confidence 666655544443331 0 0 0 121 121 122 22333344
Q ss_pred HHHHHHHHHHhhcCccchh---HHHHHHHHHHHHHHHHhHHHHHHHH-HHhH-HHHHHHHHHHHHHHH
Q 017012 179 TISSTWARVIDVMDSESGS---RLFGFIGAGATLGQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQ 241 (379)
Q Consensus 179 ~~slfW~~~~di~~~~eak---R~fgligag~~lG~I~G~~l~~~la-~~g~-~lll~aa~ll~l~~~ 241 (379)
......++++|.++.+++. ..|++...+.++|.++||.+++.+. ..|. ..+.+.+++..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 5567889999999998874 4677799999999999999988876 4454 344444444333333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.11 E-value=7.6e-05 Score=72.76 Aligned_cols=175 Identities=9% Similarity=-0.027 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccchhhcc-cCcc--chhHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHHH
Q 017012 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNL--SKAKALVLIHRF 102 (379)
Q Consensus 28 ~~~l~~~l~~F~il~~y~ilrpird~l~vs-~Gae--~lp~l~~~~~~~~ll~~~iy~~L~~~~r~--~r~rv~~~~~~~ 102 (379)
+.++...+..|+..++++.....-.....+ .|.+ ...++........++..++.++++| |+ +||+.+.+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhHHHHHHH
Confidence 345566666676666666665555544444 3433 3344555556678888999999999 99 888876654433
Q ss_pred HHHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 017012 103 FSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 182 (379)
Q Consensus 103 f~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~sl 182 (379)
.. ..+.+.....+ + + . .| ... +...............
T Consensus 330 ~~----~~~~~~~~~~~--------------~---~------~-------~~-----~~~----~~~~~~g~~~~~~~~~ 366 (451)
T 1pw4_A 330 LV----TIATIVYWMNP--------------A---G------N-------PT-----VDM----ICMIVIGFLIYGPVML 366 (451)
T ss_dssp HH----HHHHHHTTSCC--------------T---T------C-------HH-----HHH----HHHHHHHHHHTHHHHH
T ss_pred HH----HHHHHHHHHhc--------------c---c------C-------HH-----HHH----HHHHHHHHHHhchHHH
Confidence 22 01111111100 0 0 0 12 111 1111122223344557
Q ss_pred HHHHHHhhcCccchhHHHHHHHHHHHH-HHHHhHHHHHHHH-HHhH-HHHHHHHHHHHHHHHHHHHHh
Q 017012 183 TWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQSSKGIY 247 (379)
Q Consensus 183 fW~~~~di~~~~eakR~fgligag~~l-G~I~G~~l~~~la-~~g~-~lll~aa~ll~l~~~~~~~l~ 247 (379)
.+.++.|.++.+++.+.+|+.+...++ |..+|+.+.+.+. ..|. ..+.+.+++..++..+...+.
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999 9999999999886 4453 344443444444544444443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.80 E-value=0.00024 Score=69.83 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCccchhHHHHH-HHHHHHHHHHHhHHHHHHHH-HHhH-HHHHHHHHHHHHHHH
Q 017012 181 SSTWARVIDVMDSESGSRLFGF-IGAGATLGQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQ 241 (379)
Q Consensus 181 slfW~~~~di~~~~eakR~fgl-igag~~lG~I~G~~l~~~la-~~g~-~lll~aa~ll~l~~~ 241 (379)
...|.+++|.++.+.+.+-+|+ .+.+.++|+++||.+++.+. ..|. ..+.+.+++..++..
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~ 394 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL 394 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4569999999999999899999 48888999999999999876 4554 344444444434444
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.52 E-value=0.031 Score=55.01 Aligned_cols=121 Identities=11% Similarity=0.006 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCC
Q 017012 71 LILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTAN 150 (379)
Q Consensus 71 ~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (379)
++.+++-.++.|+++| |+|||+++.+....+.+.-++.++..... ....+. ..
T Consensus 65 ~~G~~iG~~~~G~laD--r~GRk~~l~~~~~l~~i~~i~~a~~~~~~-----------~~~~~~--------------~~ 117 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSN--RFGRRDSLKIAAVLFFISGVGSAWPELGF-----------TSINPD--------------NT 117 (491)
T ss_dssp HHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHCTTTTT-----------SCSSSS--------------SS
T ss_pred HHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhcch--------------hH
Confidence 5567778899999999 99999999888777755555444321100 000000 00
Q ss_pred CCcccccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017012 151 SADWGDHG-WFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 222 (379)
Q Consensus 151 ~~~w~~~~-w~~~~~~~~Fyvw~~v~~~~~~slfW~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 222 (379)
.......+ |.+. +.|.+ ..+-..........+++|..+++++.+.-++...+...|.++++.++..+.
T Consensus 118 ~~~~~a~~~~~l~-~~R~l---~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 118 VPVYLAGYVPEFV-IYRII---GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp CCGGGGGCHHHHH-HHHHH---HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHH-HHHHH---HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 00001112 2222 33442 222234455688899999999999999999999999999999988877665
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.50 E-value=0.0018 Score=62.69 Aligned_cols=146 Identities=11% Similarity=0.031 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchh-hcc-cCcc--chhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 017012 29 ALLHSSSCFFFILSAYFVVLPLRDEG-AIS-LGLS--KLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (379)
Q Consensus 29 ~~l~~~l~~F~il~~y~ilrpird~l-~vs-~Gae--~lp~l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~ 104 (379)
+++...+..|+....+...-..-... ..+ .|.+ ...++.......+++..++.++++| |++||+++.+.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS--RFAPHKVLAAYALIAM 336 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHH
Confidence 44555555555555554444444444 223 2433 3334444556678888999999999 9999998876654443
Q ss_pred HHHHHHHHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 017012 105 VSLLVFFLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTW 184 (379)
Q Consensus 105 ~~~llfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slfW 184 (379)
+.++++.+ . + . .| ... .+ +.............+
T Consensus 337 ~~~~~~~~----~-~-------------------------~-------~~-----~~~----~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 337 ALCLISAF----A-G-------------------------G-------HV-----GLI----AL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp HHHHHHHH----C-C-------------------------H-------HH-----HHH----HH-HHHHHHHTTHHHHHH
T ss_pred HHHHHHHH----c-C-------------------------C-------cH-----HHH----HH-HHHHHHHHHHHHHHH
Confidence 33332221 1 0 0 11 111 11 122233334456789
Q ss_pred HHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHh
Q 017012 185 ARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG 225 (379)
Q Consensus 185 ~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g 225 (379)
+++.|.++.+ +++..++.. .+.+|..+||.+.+.+. ..|
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999998855 666667666 66799999999999887 556
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.37 E-value=0.0066 Score=59.87 Aligned_cols=146 Identities=12% Similarity=0.109 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhcccCccc-hhH-HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Q 017012 33 SSSCFFFILSAYFVVLPLRDEGAISLGLSK-LPG-LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF 110 (379)
Q Consensus 33 ~~l~~F~il~~y~ilrpird~l~vs~Gae~-lp~-l~~~~~~~~ll~~~iy~~L~~~~r~~r~rv~~~~~~~f~~~~llf 110 (379)
.....|....+++.+...-..+....|.+. ... .......+.++..++.++++| |++||+.+........+..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d--r~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH--hhcCcchhccchHHHHHHHHHH
Confidence 333445545555444333333333333222 222 233445677788889999999 9999999877766666555555
Q ss_pred HHHHhhhcccchhhhchhccccCCccCCchhhhccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017012 111 FLLWQSSSIGYLSKLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDV 190 (379)
Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~Fyvw~~v~~~~~~slfW~~~~di 190 (379)
+........ .| ... ...++....++.....+.|.+++|+
T Consensus 360 ~~~~~~~~~---------------------------------~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 360 GTAFYTQAP---------------------------------GI-----VAL---LSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHTTCC---------------------------------HH-----HHH---HHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHhcccc---------------------------------hH-----HHH---HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 544322200 11 111 1222223344444446889999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHhHHHHHHH
Q 017012 191 MDSESGSRLFGFIGAGATLGQLFGSLFAAGM 221 (379)
Q Consensus 191 ~~~~eakR~fgligag~~lG~I~G~~l~~~l 221 (379)
++++-+..-.|+..+.+.+|.++++.+...+
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988776555
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.20 E-value=0.0013 Score=65.15 Aligned_cols=46 Identities=4% Similarity=0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 017012 180 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLG 225 (379)
Q Consensus 180 ~slfW~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g 225 (379)
....+.+++|.++.+++.+..|+.+...++|..+|+.+.+.+...+
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~ 449 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS 449 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567899999999999999999999999999999999877765444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=95.46 E-value=0.014 Score=55.47 Aligned_cols=45 Identities=7% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 017012 179 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL 224 (379)
Q Consensus 179 ~~slfW~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~ 224 (379)
.....+.++.|.++ |++.+.+|+.+...++|..+||.+.+.+...
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34577888999997 8999999999999999999999988887643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=90.63 E-value=0.18 Score=50.10 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017012 172 VALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 222 (379)
Q Consensus 172 ~~v~~~~~~slfW~~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 222 (379)
............+.+++|..+.+++.+..|+.+...++|.++|+.+.+.+.
T Consensus 415 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 415 LTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566788999999999999999999999999999999999988764
No 15
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=34.06 E-value=18 Score=29.48 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHH
Q 017012 197 SRLFGFIGAGATLGQLFGSLFAA 219 (379)
Q Consensus 197 kR~fgligag~~lG~I~G~~l~~ 219 (379)
.-+.+++||||+..++++|.+.-
T Consensus 12 Pi~W~LFgAGGm~sAl~~PvliL 34 (119)
T 1kf6_D 12 PVFWGLFGAGGMWSAIIAPVMIL 34 (119)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchheeeccchHHHHHHHHHHHH
Confidence 34789999999999999998543
Done!