Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>017014
MACSSLFSPNSLPNFTTRPSRLQISYQPNNLAFSSHQYDTAKKKVFPLASVASIPYQPIN
VDYLEEEFSGHGVTFEDIDGSCVAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLH
TIVSEGKDGTPAIQGGLSSAFSCGSDGEVWSPCNWTLHDISGNPQEFIQVELISSDTVDM
VEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVSTPEANYAVGLEGSDFFNMS
PVSSNFVIIPPENSEQNNFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREENDSY
KQLKEKMSRIYTSAPTNFTIIDRVIFSKKFSGFLSLLSKSCIFRIHASRILRMHVDESMK
ANIIVAFSTYCKVKKKKRR

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017014
        (379 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035646 - symbol:NDF5 "NDH-dependent cyclic el...   490  8.8e-47   1


>TAIR|locus:2035646 [details] [associations]
            symbol:NDF5 "NDH-dependent cyclic electron flow 5"
            species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
            activity" evidence=IEA] [GO:0005975 "carbohydrate metabolic
            process" evidence=IEA] [GO:0030246 "carbohydrate binding"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009773
            "photosynthetic electron transport in photosystem I" evidence=IMP]
            [GO:0010628 "positive regulation of gene expression" evidence=IMP]
            [GO:0016020 "membrane" evidence=IDA] [GO:0009965 "leaf
            morphogenesis" evidence=RCA] [GO:0016556 "mRNA modification"
            evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR011013 InterPro:IPR014718 EMBL:CP002684
            GO:GO:0009507 GO:GO:0003824 GO:GO:0016020 GO:GO:0005975
            GO:GO:0030246 GO:GO:0010628 EMBL:AC027034 SUPFAM:SSF74650
            Gene3D:2.70.98.10 GO:GO:0009773 EMBL:AC079287 IPI:IPI00540533
            PIR:A96596 RefSeq:NP_564687.1 UniGene:At.37071
            ProteinModelPortal:Q9C503 STRING:Q9C503 PRIDE:Q9C503
            EnsemblPlants:AT1G55370.2 GeneID:841984 KEGG:ath:AT1G55370
            TAIR:At1g55370 InParanoid:Q9C503 OMA:EMSRIYT PhylomeDB:Q9C503
            ProtClustDB:CLSN2688834 Genevestigator:Q9C503 Uniprot:Q9C503
        Length = 354

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 115/303 (37%), Positives = 173/303 (57%)

Query:    17 TRPSRLQISYQPNNLAFSSHQ-YDTAKKKVFPLASVASIPYQPINVDYLEEEFSGHGVTF 75
             +R S++ +S    +L    H+     +  V P AS ++ P  PI+V+YL  EFSGHG TF
Sbjct:    17 SRSSKINLSSSFASLPLQFHKNIKRLESSVPPSASASASPAFPIDVEYLRREFSGHGATF 76

Query:    76 EDIDGSCVAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQG 135
             EDI  +C+A++  +NGS+A +ML  G+ITSYK  +WHGG VELLHT V + ++    I+G
Sbjct:    77 EDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELLHTWVEQEEEEV-VIRG 135

Query:   136 GLSSAFSCGSDGEVWSPCNWTLHDISGNPQEFIQVELISSDT-VDMVEIRCIVTLNEASV 194
             G+SSAF      E+    +W L  ISG+ ++ +Q+EL  SD  +  +E++ I++L E ++
Sbjct:   136 GVSSAFRSSDSDEI---SDWRLQGISGDSKDCVQMELRRSDKKIKEIELKQIISLRENTL 192

Query:   195 SSELVVSNFRSSSLQLAG-SIISHLTVSTPEANYAVGLEGSDFFNMSPVSSNFVIIPPEN 253
             S EL ++N   S ++L G S++S+LTVSTPEA YAVGLEGSDF   +P    F ++  E 
Sbjct:   193 SIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYAVGLEGSDFVETTPFLPRFGVVQGEK 252

Query:   254 SEQN-NFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREENDSYKQLKEKMSRIYT 312
              E+   F          L     ++   A  SF+  D    R   +S    +E    +Y 
Sbjct:   253 EEEKPGFGGEEESNYKQLNREMSRIYTCAPKSFTVID----RGRRNSVVVGREGFEEVYM 308

Query:   313 SAP 315
              +P
Sbjct:   309 YSP 311


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      379       364   0.00083  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  239 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.68u 0.10s 34.78t   Elapsed:  00:00:01
  Total cpu time:  34.68u 0.10s 34.78t   Elapsed:  00:00:01
  Start:  Fri May 10 07:23:44 2013   End:  Fri May 10 07:23:45 2013

Back to top