BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017014
         (379 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6FT60|RRG1_CANGA Required for respiratory growth protein 1, mitochondrial OS=Candida
           glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
           0622 / NRRL Y-65) GN=RRG1 PE=3 SV=1
          Length = 377

 Score = 33.1 bits (74), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 214 IISHLTVSTPEANYAVGLEGSDFFNMSPVSSNFV------IIPPENSEQNNFI--WSPMR 265
           +I+H        NY + L      N+S ++S FV      +I  E  +  N    WS  R
Sbjct: 1   MITHFCELAAHRNYVLALYRHSLRNVSRINSGFVKHKMKKVITNEARKHKNDKSSWSIYR 60

Query: 266 FLSALGARNEKVA-DAAHSSFSESDEEMQREENDSYKQLKEKMSRIYTSAPTNFTIIDRV 324
            L  L   ++K+  D  + +++  D  M+  +     +LK  + +I T   TN  I D+ 
Sbjct: 61  RLKELKLLSDKLEDDQVNDAYNLLDSFMKSVKKPK-NELKGHLMKIRTEIETNKNIQDKT 119

Query: 325 IFSKKFSGFLSLLSKSCIFRIHASRILRMHVDESMKANIIVAFSTYCK 372
             ++     L+LL +  I +   +++L  H+ +  K  +++  + + K
Sbjct: 120 RLTR-----LNLLHR-YIAKKQQNQLLTKHIPDEYKEKLLLPLALHEK 161


>sp|Q566U4|KFA_DANRE Kynurenine formamidase OS=Danio rerio GN=afmid PE=2 SV=2
          Length = 293

 Score = 32.7 bits (73), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 211 AGSIISHLTVSTPEANYAVG--LEG----SDFFNMSPVSSNFVIIPPENSEQNNFIWSPM 264
           AG+ ++ + +ST    Y V   ++G    S  +++ P+ S +V  P + +E+     SP 
Sbjct: 154 AGAHLAAMVLSTDWTQYDVSPKIKGAFLVSGIYDLQPILSTYVNEPLKMTEEVALRNSPS 213

Query: 265 RFLSALGARNEKVADAAHSSFSESDEEMQREENDSYKQLKE---KMSRIYTSAPTNFTII 321
           RFLS L   +    D   +       E +++  + YK L+    K+S    S   +F+II
Sbjct: 214 RFLSQLKVSSAS-CDITVAVAQNDSPEFRKQSEEYYKALESAGLKVSFEDVSETDHFSII 272

Query: 322 DRVI 325
           ++++
Sbjct: 273 EQLV 276


>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
           OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
           DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
           PE=3 SV=1
          Length = 427

 Score = 32.3 bits (72), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 185 CIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVSTPE 224
           C+  L E+ +  E +V    SS ++L GS+  HLT+S+ E
Sbjct: 69  CLSDLTESMLQKEFLVQEICSSYVKLRGSLQKHLTISSQE 108


>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
          Length = 1975

 Score = 32.0 bits (71), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 212 GSIISHLTVSTPEAN-YAVGLEGSDFFNMSPVSSNFVIIPPENSEQNNFIWSPMRFLSAL 270
           G+++  L    PE +    G  G+D F++ PVS N  +I P + E+ +     ++FL ++
Sbjct: 43  GTVVFRLEAYDPEGSPVTYGAIGADHFSVDPVSGNITLIKPLDREEKD----TLKFLVSI 98

Query: 271 GAR 273
             R
Sbjct: 99  RDR 101


>sp|A0Q3I1|PEPT_CLONN Peptidase T OS=Clostridium novyi (strain NT) GN=pepT PE=3 SV=1
          Length = 407

 Score = 31.6 bits (70), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 272 ARNEKVADAAHSSFSESDEEMQREENDSYKQLKEKMSRIYTSAPTNFTIIDRV 324
           A  +KV D  +S + E   E+Q   ND Y  +KEK+  ++    T F  I+ V
Sbjct: 294 ATMQKVVDTLNSKYGEGTVELQM--NDQYYNMKEKVEPVHHIVDTAFKAIEEV 344


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.130    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,141,265
Number of Sequences: 539616
Number of extensions: 5733638
Number of successful extensions: 15861
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 15857
Number of HSP's gapped (non-prelim): 23
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)