Query 017014
Match_columns 379
No_of_seqs 166 out of 443
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 7.6E-62 1.6E-66 463.0 21.4 222 77-354 19-258 (305)
2 COG0676 Uncharacterized enzyme 100.0 3.1E-49 6.7E-54 380.1 19.8 218 73-354 16-246 (287)
3 cd09020 D-hex-6-P-epi_like D-h 100.0 1.2E-47 2.5E-52 366.1 23.6 212 84-354 2-232 (269)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 2.7E-29 5.8E-34 239.3 16.9 213 83-359 3-242 (271)
5 PF01263 Aldose_epim: Aldose 1 99.8 1.9E-20 4.1E-25 177.2 16.2 151 83-239 2-185 (300)
6 cd09021 Aldose_epim_Ec_YphB al 99.8 1.8E-19 3.9E-24 171.0 18.0 194 95-346 4-232 (273)
7 cd01081 Aldose_epim aldose 1-e 99.8 5.7E-17 1.2E-21 151.2 21.1 140 93-238 2-171 (284)
8 cd09024 Aldose_epim_lacX Aldos 99.7 7E-17 1.5E-21 155.3 13.6 125 88-224 3-150 (288)
9 cd09022 Aldose_epim_Ec_YihR Al 99.2 1.4E-10 3.1E-15 111.0 14.8 126 92-229 1-157 (284)
10 PRK15172 putative aldose-1-epi 98.9 2.2E-08 4.7E-13 97.8 15.0 141 85-238 12-185 (300)
11 COG2017 GalM Galactose mutarot 98.9 4.8E-08 1E-12 96.1 14.8 138 79-225 8-176 (308)
12 cd09019 galactose_mutarotase_l 98.6 6.2E-07 1.3E-11 88.3 14.7 131 85-222 3-166 (326)
13 PLN00194 aldose 1-epimerase; P 98.6 8.8E-07 1.9E-11 88.2 15.1 135 83-221 9-178 (337)
14 TIGR02636 galM_Leloir galactos 97.9 0.00027 5.9E-09 70.4 13.7 135 83-222 6-171 (335)
15 PTZ00485 aldolase 1-epimerase; 97.7 0.001 2.3E-08 67.9 15.1 150 72-222 4-191 (376)
16 PRK11055 galM galactose-1-epim 97.6 0.0017 3.8E-08 65.2 15.3 135 83-222 11-176 (342)
17 cd09023 Aldose_epim_Ec_c4013 A 97.4 0.0012 2.5E-08 64.2 10.9 74 149-222 76-156 (284)
18 PF14315 DUF4380: Domain of un 94.4 1.2 2.6E-05 43.3 14.0 117 85-212 6-144 (274)
19 cd09269 deoxyribose_mutarotase 93.8 0.32 6.8E-06 48.3 8.9 43 178-220 102-146 (293)
20 TIGR03593 yidC_nterm membrane 84.2 29 0.00063 34.8 14.0 116 86-210 76-204 (366)
21 PF14849 YidC_periplas: YidC p 79.6 22 0.00048 33.7 10.7 121 86-211 2-132 (270)
22 PRK01318 membrane protein inse 72.5 77 0.0017 34.3 13.5 120 85-212 40-172 (521)
23 KOG1604 Predicted mutarotase [ 68.7 1.2E+02 0.0027 31.4 13.3 138 83-223 22-191 (353)
24 PF14486 DUF4432: Domain of un 67.2 46 0.001 33.2 9.9 138 79-221 2-170 (302)
25 TIGR00192 urease_beta urease, 55.7 11 0.00023 32.6 2.6 30 187-216 13-42 (101)
26 COG0832 UreB Urea amidohydrola 54.4 11 0.00024 32.6 2.6 30 187-216 13-42 (106)
27 PF00699 Urease_beta: Urease b 54.2 10 0.00022 32.7 2.3 30 187-216 12-41 (100)
28 PRK13203 ureB urease subunit b 54.1 12 0.00026 32.3 2.7 31 187-217 13-43 (102)
29 cd00407 Urease_beta Urease bet 54.0 12 0.00026 32.3 2.7 30 187-216 13-42 (101)
30 PRK13202 ureB urease subunit b 50.7 15 0.00033 31.8 2.8 30 187-216 13-43 (104)
31 PRK13201 ureB urease subunit b 47.4 17 0.00037 32.8 2.8 31 187-217 13-43 (136)
32 PRK13204 ureB urease subunit b 45.5 19 0.00041 33.3 2.8 30 187-216 36-65 (159)
33 PRK13198 ureB urease subunit b 45.1 19 0.00042 33.2 2.8 31 187-217 41-71 (158)
34 PRK13205 ureB urease subunit b 44.4 20 0.00044 33.1 2.8 30 187-216 13-42 (162)
35 PF14742 GDE_N_bis: N-terminal 35.5 1.4E+02 0.003 27.7 6.9 37 178-215 78-114 (194)
36 PRK13192 bifunctional urease s 31.6 39 0.00084 32.6 2.6 31 187-217 122-152 (208)
37 PF12690 BsuPI: Intracellular 31.6 33 0.00072 27.9 1.9 19 193-211 1-19 (82)
38 PRK13986 urease subunit alpha; 30.2 40 0.00088 32.8 2.5 30 187-216 118-147 (225)
39 PF05506 DUF756: Domain of unk 28.0 64 0.0014 26.0 3.0 33 185-217 11-43 (89)
40 PF00942 CBM_3: Cellulose bind 27.9 92 0.002 25.1 3.9 35 191-225 12-47 (86)
41 PF04744 Monooxygenase_B: Mono 22.3 75 0.0016 33.3 2.9 23 190-212 261-283 (381)
42 cd04481 RPA1_DBD_B_like RPA1_D 22.2 1.2E+02 0.0026 25.1 3.6 49 316-375 25-73 (106)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-62 Score=463.01 Aligned_cols=222 Identities=20% Similarity=0.245 Sum_probs=196.3
Q ss_pred ecCCeeeEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC------CCCc
Q 017014 77 DIDGSCVAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD------GEVW 150 (379)
Q Consensus 77 ~~~gl~~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~------~~FA 150 (379)
..+|++.+.|+.++|++|+|+||||||+|||.. .++|+||+|.+|.|+|+||||||||+|||||++ .|||
T Consensus 19 ~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~----~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFa 94 (305)
T KOG1594|consen 19 GRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNE----NGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFA 94 (305)
T ss_pred ccCCCceEEEeCCCCCeEEEEEeccEEEEeecC----CCceeEEechhhhcCCCCcccCCcceEeeccCCCCcccccccc
Confidence 368889999999999999999999999999985 568999999999999999999999999998874 2499
Q ss_pred CccCcEEeeecC-CC---CccEEEEEeeCCC-----CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecC
Q 017014 151 SPCNWTLHDISG-NP---QEFIQVELISSDT-----VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVS 221 (379)
Q Consensus 151 R~~~W~l~~~~~-~~---~~~v~l~L~ls~~-----~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~Vs 221 (379)
||+.|.+++... .+ +..|++.|+.+++ +|.|+++|+|.|+++.|++++.|+|++++||+|+.||||||+|+
T Consensus 95 Rn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vs 174 (305)
T KOG1594|consen 95 RNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVS 174 (305)
T ss_pred cceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeec
Confidence 999999987642 11 2355666655543 58999999999999999999999999999999999999999999
Q ss_pred CCCceEEecCCCCCcccCCCCCCCcccCCCCccccccccCcchhhhcccccccccccccccCCCCcchhhhhccccCcce
Q 017014 222 TPEANYAVGLEGSDFFNMSPVSSNFVIIPPENSEQNNFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREENDSYK 301 (379)
Q Consensus 222 Di~~v~V~GLeG~~YlDkl~~~s~f~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~~~~~~~~~~~~E~~~~~ 301 (379)
||++++|+||++++|+|++...+ ...|+++++
T Consensus 175 disevrveGL~tldylD~~~~~~------------------------------------------------~~tE~~dav 206 (305)
T KOG1594|consen 175 DISEVRVEGLETLDYLDNLKNRE------------------------------------------------RFTEQRDAV 206 (305)
T ss_pred ccceEEEeccccccccccccchh------------------------------------------------hccccCceE
Confidence 99999999999999999995322 234667789
Q ss_pred eecCccceEEcCCCCeeEEecCce---eEEEeeCccccCCceEEEccchhhhhhcc
Q 017014 302 QLKEKMSRIYTSAPTNFTIIDRVI---FSKKFSGFLSLLSKSCIFRIHASRILRMH 354 (379)
Q Consensus 302 ~~~~EvDRVY~~aP~~~tIiD~~~---~~~~~~~~~~~~s~~~v~~~~~~~~~~m~ 354 (379)
+|++||||||+++|..+.|.|..+ |.+++.|+ +|+||||||++|+|+|.
T Consensus 207 TF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~----pDaVVWNPW~kksk~ma 258 (305)
T KOG1594|consen 207 TFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGL----PDAVVWNPWDKKSKTMA 258 (305)
T ss_pred eeccceeeEEecCCceEEEEEeccccEEEEeccCC----CceEEeChhHhhhhhhh
Confidence 999999999999999999998843 99999998 99999999999988875
No 2
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-49 Score=380.06 Aligned_cols=218 Identities=16% Similarity=0.212 Sum_probs=183.3
Q ss_pred eEEEecCCeeeEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEec-CCC--C---
Q 017014 73 VTFEDIDGSCVAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFS-CGS--D--- 146 (379)
Q Consensus 73 vtf~~~~gl~~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfP-fg~--~--- 146 (379)
+.....+..+++.+.++ -++|.|+||||||+||+|+ |++|+||||+.+.|++|+||||||||||| ||+ .
T Consensus 16 ~~~~~~~~~~~~~~~h~-~~~a~islqGAqLLs~qP~----ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~ 90 (287)
T COG0676 16 LSLVKLDQLPLIVVDHP-LGSAAISLQGAQLLSWQPK----GEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGL 90 (287)
T ss_pred ceeEeeeccCceEeecc-cceeEEecCCceEEEecCC----CCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCC
Confidence 34444466667777775 5899999999999999997 56899999999999999999999999997 776 2
Q ss_pred C--CCcCccCcEEeeecCCCCccEEEEEeeCCC--CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecCC
Q 017014 147 G--EVWSPCNWTLHDISGNPQEFIQVELISSDT--VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVST 222 (379)
Q Consensus 147 ~--~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~--~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~VsD 222 (379)
| ||||++.|+|.+...+ ++.|.++|.|..+ +|.|++++++.|+ ++|+++|++.|+.+ |++||||||+|+|
T Consensus 91 PaHG~AR~~~W~l~~~~~~-~~~v~v~f~L~~~~~p~~~~lr~~~~~g-~~le~~l~~~~~~s----~~~AlHtYF~VgD 164 (287)
T COG0676 91 PAHGFARNRPWKLLEHDED-EDGVRVTFGLDLEDEPHDFTLRLTFRFG-ETLELELESYGEES----FQAALHTYFRVGD 164 (287)
T ss_pred CccchhhcCceeeeehhcc-cCceEEEEEeCCCccccceEEEEEeecc-ceEEEEEEecChhH----HHHhhcceEEecc
Confidence 3 4999999999988764 4566677766655 4999999999996 89999999999866 9999999999999
Q ss_pred CCceEEecCCCCCcccCCCCCCCcccCCCCccccccccCcchhhhcccccccccccccccCCCCcchhhhhccccCccee
Q 017014 223 PEANYAVGLEGSDFFNMSPVSSNFVIIPPENSEQNNFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREENDSYKQ 302 (379)
Q Consensus 223 i~~v~V~GLeG~~YlDkl~~~s~f~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~~~~~~~~~~~~E~~~~~~ 302 (379)
|++|.|.||+|..|.+.+... ..+.+...++
T Consensus 165 i~qv~V~GL~~~~~~~~~~~~-------------------------------------------------~~v~~~g~~~ 195 (287)
T COG0676 165 IEQVEVSGLGGVCIDKVLNAE-------------------------------------------------EEVTQHGIVT 195 (287)
T ss_pred hhheEeccCCceehhhhhhce-------------------------------------------------eeccCCCcee
Confidence 999999999998877766210 1112222499
Q ss_pred ecCccceEEcCCCCeeEEecCc---eeEEEeeCccccCCceEEEccchhhhhhcc
Q 017014 303 LKEKMSRIYTSAPTNFTIIDRV---IFSKKFSGFLSLLSKSCIFRIHASRILRMH 354 (379)
Q Consensus 303 ~~~EvDRVY~~aP~~~tIiD~~---~~~~~~~~~~~~~s~~~v~~~~~~~~~~m~ 354 (379)
|++|+||||+..+..+.|.|++ +|.++..|- +++||||||.+++-+|-
T Consensus 196 ~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~----~~~VvWNP~~~~s~~M~ 246 (287)
T COG0676 196 FPGETDRIYLNPEPCSVIVDPALNRIITLEHQGH----SSTVVWNPGHAKSSSMA 246 (287)
T ss_pred eCCCccEEEEcCCCceEEecCcceEEEEEEecCC----CCeEEECCCcccccccc
Confidence 9999999999999999999994 589988886 89999999999999985
No 3
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1.2e-47 Score=366.14 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=181.7
Q ss_pred EEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC---------CCCcCccC
Q 017014 84 AKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD---------GEVWSPCN 154 (379)
Q Consensus 84 v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~---------~~FAR~~~ 154 (379)
+.|+++ +++|+|+++||||+||+++ ++.|+||+|+.+.|+++++||||||||||+|++ .||||+..
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~~~----~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~ 76 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWKPK----GGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRL 76 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEeCC----CCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCc
Confidence 344443 5899999999999999996 468999999999999999999999999995541 25999999
Q ss_pred cEEeeecCCCCccEEEEEeeCCC-------CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecCCCCceE
Q 017014 155 WTLHDISGNPQEFIQVELISSDT-------VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVSTPEANY 227 (379)
Q Consensus 155 W~l~~~~~~~~~~v~l~L~ls~~-------~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~VsDi~~v~ 227 (379)
|+|.+...+ ++.++++|.+.++ +++|+|+|+++|++++|+++|+|+|+|++||.|+.+||+||+|+|+++++
T Consensus 77 W~l~~~~~~-~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~~~ 155 (269)
T cd09020 77 WELLEVSED-EDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQVR 155 (269)
T ss_pred eEEeeeecC-CCceEEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEEEEEEECCCCCCeEehhccCeeEecCCccccE
Confidence 999887643 3467888877654 47999999999988999999999999999999999999999999999999
Q ss_pred EecCCCCCcccCCCCCCCcccCCCCccccccccCcchhhhcccccccccccccccCCCCcchhhhhccccCcceeecCcc
Q 017014 228 AVGLEGSDFFNMSPVSSNFVIIPPENSEQNNFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREENDSYKQLKEKM 307 (379)
Q Consensus 228 V~GLeG~~YlDkl~~~s~f~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~~~~~~~~~~~~E~~~~~~~~~Ev 307 (379)
|.||.|+.|+|+++.. . ...+.+ .+.|++||
T Consensus 156 v~gl~~~~y~d~~~~~----------------------------~--------------------~~~~~~-~~~~~~~~ 186 (269)
T cd09020 156 VEGLEGATYLDKLTDQ----------------------------R--------------------EKVQGG-AVTFDGEV 186 (269)
T ss_pred EeCCCCCceEEcCCCc----------------------------c--------------------ccccCC-ceEECCcc
Confidence 9999999999998420 0 011222 49999999
Q ss_pred ceEEcCCCCeeEEecCc---eeEEEeeCccccCCceEEEccchhhhhhcc
Q 017014 308 SRIYTSAPTNFTIIDRV---IFSKKFSGFLSLLSKSCIFRIHASRILRMH 354 (379)
Q Consensus 308 DRVY~~aP~~~tIiD~~---~~~~~~~~~~~~~s~~~v~~~~~~~~~~m~ 354 (379)
||||.+.+..++|.|.+ ++.+.++|+ .+.||||||++|+|+|.
T Consensus 187 Drvy~~~~~~~~i~d~~~~~~i~i~~~~~----~~~VVWNP~~~~~~~~~ 232 (269)
T cd09020 187 DRVYLNTPAPLTIDDPAWGRRIRIEKSGS----PSAVVWNPWIEKAARMA 232 (269)
T ss_pred ceEEeCCCCCEEEEcCCCCcEEEEEecCC----CCEEEeCcchhhccccc
Confidence 99999999999999874 588889886 99999999999999987
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.96 E-value=2.7e-29 Score=239.35 Aligned_cols=213 Identities=13% Similarity=0.127 Sum_probs=163.1
Q ss_pred eEEEEeCC-CCEEEEE-cCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC--------------
Q 017014 83 VAKMGFEN-GSTATLM-LPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD-------------- 146 (379)
Q Consensus 83 ~v~L~~~~-gssA~I~-L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~-------------- 146 (379)
.+.|+..+ +.+++|. .+||+|+||++. | .|+||+|+.+.++++++||||+|+|||+++.
T Consensus 3 ~~~l~~~~~~~~~~v~p~~Ga~l~s~~~~----g-~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~ 77 (271)
T cd09025 3 TYELSDEEAGSRLRVVPERGGLITRWTVQ----G-RELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYT 77 (271)
T ss_pred EEEEEcCCCceEEEEecccCCEEEEEecC----C-EEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEe
Confidence 45566554 3466555 889999999974 3 7999999999999999999999999996652
Q ss_pred ---CCCcCccCcEEeeecCCCCccEEEEEeeCC-----CCCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccce
Q 017014 147 ---GEVWSPCNWTLHDISGNPQEFIQVELISSD-----TVDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHL 218 (379)
Q Consensus 147 ---~~FAR~~~W~l~~~~~~~~~~v~l~L~ls~-----~~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf 218 (379)
.||+|+..|++.+.. +...++++|...+ .++.|+++++++|.++.|+++++++|+|++|+.|..++|+||
T Consensus 78 lp~HGf~r~~~W~v~~~~--~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF 155 (271)
T cd09025 78 LKQHGFARDLPWEVELLG--DGAGLTLTLRDNEATRAVYPFDFELELTYRLAGNTLEIAQRVHNLGDQPMPFSFGFHPYF 155 (271)
T ss_pred ccCcccccCCCEEEEecC--CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeCCEEEEEEEEEECCCCcEEEEEecCcee
Confidence 149999999997644 2235555554432 157899999999988999999999999999999999999999
Q ss_pred ecCCCCceEEecCCCCCcccCCCCCCCcccCCCCccccccccCcchhhhcccccccccccccccCCCCcchhhhhccccC
Q 017014 219 TVSTPEANYAVGLEGSDFFNMSPVSSNFVIIPPENSEQNNFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREEND 298 (379)
Q Consensus 219 ~VsDi~~v~V~GLeG~~YlDkl~~~s~f~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~~~~~~~~~~~~E~~ 298 (379)
+++++++++|.|+ +..|+|+.+.. . ...+ .
T Consensus 156 ~~~~~~~~~l~~~-~~~~~~~~~~~----------------------------~--------------------~~~~-~ 185 (271)
T cd09025 156 AVPDKAKLSLDLP-PTRCFDQKTDE----------------------------E--------------------ANTP-G 185 (271)
T ss_pred eCCchhccEEEcC-HHHHhhhccCC----------------------------c--------------------cCCc-c
Confidence 9999999999999 58899987421 0 0001 1
Q ss_pred cceeecCccceEEcCCCCeeEEecCc---eeEEEeeCccccCCceEEEccchhhhhhccccccc
Q 017014 299 SYKQLKEKMSRIYTSAPTNFTIIDRV---IFSKKFSGFLSLLSKSCIFRIHASRILRMHVDESM 359 (379)
Q Consensus 299 ~~~~~~~EvDRVY~~aP~~~tIiD~~---~~~~~~~~~~~~~s~~~v~~~~~~~~~~m~~~~~~ 359 (379)
....+.+++||+|...+ .++|.|.. ++.+...+ ...+.|||||. -+.|--=|.|
T Consensus 186 ~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~---~~~~~vvw~p~---~~~~vCvEp~ 242 (271)
T cd09025 186 QFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDE---PFSNLVVWTDK---GKDFVCLEPW 242 (271)
T ss_pred cccccccccchhhccCC-ceEEEecCCCEEEEEecCC---CcceEEEecCC---CCcEEEEecC
Confidence 13567789999999876 78888863 57776654 13799999996 3455545554
No 5
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=99.85 E-value=1.9e-20 Score=177.23 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=124.4
Q ss_pred eEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEecCC----------CCCCCCCCcc---c-----ceeEEecCC
Q 017014 83 VAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIVS----------EGKDGTPAIQ---G-----GLSSAFSCG 144 (379)
Q Consensus 83 ~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~----------A~~dggkaIR---G-----GVPICfPfg 144 (379)
++.|++.++.+|+|..+||+|+||+... .+.|+||..+. +..-.+.+.| | |+++|||.+
T Consensus 2 ~itL~n~~~~~~~i~~~Ga~l~s~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l~~~ 78 (300)
T PF01263_consen 2 LITLENGNGLSAVIPEYGAELTSLQVKG---NGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCLPWN 78 (300)
T ss_dssp EEEEEETTSEEEEEETBTTEEEEEEETT---TTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEBSSS
T ss_pred EEEEECCCceEEEEeccCcEEEEEEECC---CCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEeeec
Confidence 5778876678999999999999999862 25899999998 5677889999 8 999999844
Q ss_pred C-C----CCCcCccCcEEeeecCCCCccEEEEEeeCCC-----CCceEEEEEEEEeCCc-eEEEEEEEeCCCCcchhhhh
Q 017014 145 S-D----GEVWSPCNWTLHDISGNPQEFIQVELISSDT-----VDMVEIRCIVTLNEAS-VSSELVVSNFRSSSLQLAGS 213 (379)
Q Consensus 145 ~-~----~~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~-----~~~F~L~~~VtL~~~~-L~l~L~V~Ntg~~pf~ft~A 213 (379)
+ . .||||+..|+|.+... ++.+.++|.+..+ +++|+++++++|.++. |+++++|+|.| +++.|..+
T Consensus 79 ~~~~~~~HG~~~~~~w~v~~~~~--~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~~v~n~~-~~~p~~~g 155 (300)
T PF01263_consen 79 GPYPNPIHGFARNKPWEVEEQSE--DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITYEVTNDG-KPMPFNLG 155 (300)
T ss_dssp BTTTBEETBSGGGSB-EEEEEEE--TTEEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEEEEEESS-SEEEEBEE
T ss_pred cCCCcCCCCCcccccEEEEEecc--cceEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEEEEEecC-ccEEeecc
Confidence 3 2 3599999999998875 4678888887322 5789999999999999 99999999999 99999999
Q ss_pred hccceecC----CCCceEEecCCCCCcccC
Q 017014 214 IISHLTVS----TPEANYAVGLEGSDFFNM 239 (379)
Q Consensus 214 LHTYf~Vs----Di~~v~V~GLeG~~YlDk 239 (379)
+|+||+++ +...+.+.+.+...+-+.
T Consensus 156 ~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~ 185 (300)
T PF01263_consen 156 FHPYFNLPGEDIDDHQLQVPADEYLELDER 185 (300)
T ss_dssp EEEEEETTCTSGTTGEEEEEEEEEEEEETT
T ss_pred ccceEEcCCcceeeeEEEeccceeeecccc
Confidence 99999999 778888999766666553
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.83 E-value=1.8e-19 Score=170.99 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=140.0
Q ss_pred EEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC--------------------------CC
Q 017014 95 TLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD--------------------------GE 148 (379)
Q Consensus 95 ~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~--------------------------~~ 148 (379)
.|...||.|+||+-. +++.|+||--..+.+ ++.|+|+|+.||+-+. .|
T Consensus 4 ~v~~~Ga~l~sl~~~---~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG 77 (273)
T cd09021 4 LAPELGGSIAALTSR---GDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHG 77 (273)
T ss_pred eCCCCCceEEEEEeC---CCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCccc
Confidence 467789999999975 235799996543322 3569999999996541 02
Q ss_pred CcCccCcEEeeecCCCCccEEEEEeeCCC--CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecCCCCce
Q 017014 149 VWSPCNWTLHDISGNPQEFIQVELISSDT--VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVSTPEAN 226 (379)
Q Consensus 149 FAR~~~W~l~~~~~~~~~~v~l~L~ls~~--~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~VsDi~~v 226 (379)
|||+..|+|.+... +.|+++|.+.+. +++|+++++++|.++.|+++++++|++++|+.|+.++|+||+|++...+
T Consensus 78 ~ar~~~w~v~~~~~---~~v~l~l~~~~~~~P~~~~~~~~y~L~~~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~~~~l 154 (273)
T cd09021 78 DGWRRPWQVVAASA---DSAELQLDHEADDPPWAYRAEQRFHLAGDGLSITLSVTNRGDRPMPAGLGFHPYFPRTPDTRL 154 (273)
T ss_pred chhcCceEEEeccC---CeEEEEEecCCCCCCEeEEEEEEEEEcCCCEEEEEEEEECCCCCceeeeecCccEecCCCCEE
Confidence 89999999976542 467777776543 4689999999997799999999999999999999999999999999999
Q ss_pred EEecCCCCCcc---cCCCCCCCcccCCCCccccccccCcchhhhcccccccccccccccCCCCcchhhhhccccCcceee
Q 017014 227 YAVGLEGSDFF---NMSPVSSNFVIIPPENSEQNNFIWSPMRFLSALGARNEKVADAAHSSFSESDEEMQREENDSYKQL 303 (379)
Q Consensus 227 ~V~GLeG~~Yl---Dkl~~~s~f~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~q~~~~~~~~~~~~~~~~E~~~~~~~ 303 (379)
.|.|++ .|. |+++... ... . .+ ..-. ......
T Consensus 155 ~v~~~~--~~~~d~~~lp~~~----------~~~----------------------------~---~~-~df~-~~~~l~ 189 (273)
T cd09021 155 QADADG--VWLEDEDHLPTGL----------RPH----------------------------P---PD-WDFS-QPRPLP 189 (273)
T ss_pred EEecce--EEecCCCcCCCcc----------cCC----------------------------C---cc-hhhc-CCCcCC
Confidence 999874 122 4442100 000 0 00 0000 011233
Q ss_pred cCccceEEcCCCCeeEEecC---ceeEEEeeC-ccccCCceEEEccc
Q 017014 304 KEKMSRIYTSAPTNFTIIDR---VIFSKKFSG-FLSLLSKSCIFRIH 346 (379)
Q Consensus 304 ~~EvDRVY~~aP~~~tIiD~---~~~~~~~~~-~~~~~s~~~v~~~~ 346 (379)
..++|++|........+.|+ ..+.|...+ + +..|||||+
T Consensus 190 ~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~----~~~vvwtp~ 232 (273)
T cd09021 190 DRWIDNCFTGWDGAALIWPPERGLALTIEADAPF----SHLVVYRPP 232 (273)
T ss_pred cccccccccCCCcceEEecCCCCcEEEEecCCCC----CEEEEEcCC
Confidence 46899999986666777775 358888888 6 899999999
No 7
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.77 E-value=5.7e-17 Score=151.23 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=116.3
Q ss_pred EEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCC---C---------------------CC
Q 017014 93 TATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGS---D---------------------GE 148 (379)
Q Consensus 93 sA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~---~---------------------~~ 148 (379)
.|+|..+||+|+||+.+ ++.|+||.++.+...+..+.++|.|+|||+.+ + .|
T Consensus 2 ~~~i~~~Ga~i~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG 77 (284)
T cd01081 2 VAVIAPRGANIISLKVK----GDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHG 77 (284)
T ss_pred EEEEeCcCcEEEEEEcC----CCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccC
Confidence 68999999999999985 34799999999877778899999999999544 1 13
Q ss_pred CcCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecCCC-
Q 017014 149 VWSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVSTP- 223 (379)
Q Consensus 149 FAR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~VsDi- 223 (379)
|+|+..|++..... +++.|++++.+.+. +++|+++++++|.+++|+++++|+|++++|+.|..++|.||++++.
T Consensus 78 ~~~~~~w~v~~~~~-~~~~v~l~~~~~~~~~~~P~~~~l~~ty~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~ 156 (284)
T cd01081 78 FVRNLPWRVVATDE-EEASVTLSYDLNDGPGGYPFPLELTVTYTLDADTLTITFTVTNLGDEPMPFGLGWHPYFGLPGVA 156 (284)
T ss_pred CeecCcEEEEEecc-CCcEEEEEEEeCCCCCCCCEEEEEEEEEEEeCCeEEEEEEEEeCCCCCcceeeecCceEecCCCc
Confidence 89999999987653 34578888877653 4688999999998899999999999999999999999999999985
Q ss_pred -CceEEecCCCCCccc
Q 017014 224 -EANYAVGLEGSDFFN 238 (379)
Q Consensus 224 -~~v~V~GLeG~~YlD 238 (379)
+++++.... ..|++
T Consensus 157 ~~~~~l~~~~-~~~~~ 171 (284)
T cd01081 157 IEDLRLRVPA-SKVLP 171 (284)
T ss_pred ccceEEEecC-CEEEe
Confidence 788888765 45553
No 8
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.72 E-value=7e-17 Score=155.28 Aligned_cols=125 Identities=16% Similarity=0.070 Sum_probs=100.3
Q ss_pred eCCC-CEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC-----------------CCC
Q 017014 88 FENG-STATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD-----------------GEV 149 (379)
Q Consensus 88 ~~~g-ssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~-----------------~~F 149 (379)
+.|+ .+|+|..+||+|+||+.+ +.+.|+||.++.+.+ .||+|+|||+++. .||
T Consensus 3 l~n~~~~a~v~~~Ga~l~s~~~~---~~g~e~l~~~~~~~~------~~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 3 LENEFLTVTISEHGAELTSIKDK---KTGREYLWQGDPAYW------GRHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred EECCcEEEEEeccCcEEEEEEeC---CCCCEEEeCCChHHc------CCCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 3444 799999999999999985 235799999976544 4678999996552 249
Q ss_pred cCccCcEEeeecCCCCccEEEEEeeCCC-----CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecCCCC
Q 017014 150 WSPCNWTLHDISGNPQEFIQVELISSDT-----VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVSTPE 224 (379)
Q Consensus 150 AR~~~W~l~~~~~~~~~~v~l~L~ls~~-----~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~VsDi~ 224 (379)
+|...|++.+... +.+.++|...+. |+.|+++++++|.++.|+++++++|++++|+.|..++|+||++++..
T Consensus 74 ~r~~~w~v~~~~~---~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~~ 150 (288)
T cd09024 74 ARDMEFEVVEQSD---DSVTFELTDNEETLKVYPFDFELRVTYTLEGNTLKVTYEVKNPDDKTMPFSIGGHPAFNCPLDE 150 (288)
T ss_pred cccCceEEEEccC---CEEEEEEccCcchhhcCCeEEEEEEEEEEeCCEEEEEEEEEcCCCCceEEEEeCCceEECCCCC
Confidence 9999999976542 456666655432 46788888899988999999999999999999999999999999754
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.24 E-value=1.4e-10 Score=111.00 Aligned_cols=126 Identities=10% Similarity=0.104 Sum_probs=94.4
Q ss_pred CEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC-------------------------
Q 017014 92 STATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD------------------------- 146 (379)
Q Consensus 92 ssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~------------------------- 146 (379)
++++|.-+||.|+||+.. +.++||--+.+.+ ..+.+| |+++|+.+.
T Consensus 1 ~~v~i~~~Ga~l~~~~~~-----g~~il~~~~~~~~--~~~~~g--~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~ 71 (284)
T cd09022 1 YRAVVTEVGAGLRSLTVG-----GRDLVEPYPADEV--PPGAAG--QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNA 71 (284)
T ss_pred CEEEEEecCcEEEEEEEC-----CEEEEecCCCccC--Cccccc--cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCC
Confidence 468999999999999863 3689885554432 224444 578875431
Q ss_pred -CCCcCccCcEEeeecCCCCccEEEEEeeCCC---CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhccceecCC
Q 017014 147 -GEVWSPCNWTLHDISGNPQEFIQVELISSDT---VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSIISHLTVST 222 (379)
Q Consensus 147 -~~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~---~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~VsD 222 (379)
.+|+|...|++.+.. ++.+.++|..... |..|+++++++|.++.|+++++++|++++|+.|..++|+||++++
T Consensus 72 ~HG~~~~~~w~v~~~~---~~~v~l~l~~~~~~~yP~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~l~~ 148 (284)
T cd09022 72 IHGLVRWADWQLVEHT---DSSVTLRTRIPPQPGYPFTLELTVTYELDDDGLTVTLTATNVGDEPAPFGVGFHPYLSAGG 148 (284)
T ss_pred CcCCeecceEEEeecc---CCeEEEEEEeCCccCCCceEEEEEEEEEcCCcEEEEEEEEeCCCCCeEeeeEecceEecCC
Confidence 128999999996644 2467777766422 568899999999889999999999999999999999999999986
Q ss_pred C--CceEEe
Q 017014 223 P--EANYAV 229 (379)
Q Consensus 223 i--~~v~V~ 229 (379)
. .+.++.
T Consensus 149 ~~~~~~~L~ 157 (284)
T cd09022 149 APLDECTLT 157 (284)
T ss_pred CCcccEEEE
Confidence 3 444433
No 10
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=98.93 E-value=2.2e-08 Score=97.79 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=98.9
Q ss_pred EEEeCCC-CEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCcccceeEEecCCCC-----------------
Q 017014 85 KMGFENG-STATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSD----------------- 146 (379)
Q Consensus 85 ~L~~~~g-ssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~----------------- 146 (379)
.+++.+| .+|+|.-+||.|++|+-. + .++++--..+.+ ....+| ++++|+-+.
T Consensus 12 ~~~l~~~~~~v~i~~~Ga~i~~l~~~----~-~~vv~~~~~~~~---~~~~~g-~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 12 TISLAAGDYQATIVTVGAGLAELTFQ----G-RHLVIPHKPEEM---PLAHLG-KVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred EEEEeCCCEEEEEecCCcEEEEEEEC----C-EEEEecCCcccc---Cccccc-cEecccCCeecCCEEEECCEEEECCC
Confidence 3455566 699999999999999863 3 466655443333 222344 678875431
Q ss_pred ---------CCCcCccCcEEeeecCCCCccEEEEEeeCCC---CCceEEEEEEEEe-CCceEEEEEEEeCCCCcchhhhh
Q 017014 147 ---------GEVWSPCNWTLHDISGNPQEFIQVELISSDT---VDMVEIRCIVTLN-EASVSSELVVSNFRSSSLQLAGS 213 (379)
Q Consensus 147 ---------~~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~---~~~F~L~~~VtL~-~~~L~l~L~V~Ntg~~pf~ft~A 213 (379)
.|+++...|++.+... +.+.+++.+.+. |..|+++++.+|. ++.|+++++++|.+++++.|.-+
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~~---~~v~l~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~~P~~~g 159 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELTA---TSVTLTAFLPPSYGYPFMLASQVIYSLDAATGLSVEIASQNIGDVPAPYGVG 159 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEecC---CEEEEEEEcCCCCCCCEEEEEEEEEEEccCCeEEEEEEEEECCCCceeeEEe
Confidence 1278999999865442 367777766442 4567777778885 46899999999999999999999
Q ss_pred hccceecC--CCCceEEecCCCCCccc
Q 017014 214 IISHLTVS--TPEANYAVGLEGSDFFN 238 (379)
Q Consensus 214 LHTYf~Vs--Di~~v~V~GLeG~~YlD 238 (379)
.|+||.++ ++.+.++. +....|+.
T Consensus 160 ~HpYFnl~~~~~~~~~L~-~~a~~~~~ 185 (300)
T PRK15172 160 IHPYLTCNLTSVDEYLLQ-LPANQVLA 185 (300)
T ss_pred cCceEecCCCChhceEEE-EeCCeEEe
Confidence 99999986 46666665 33455554
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.87 E-value=4.8e-08 Score=96.07 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=103.1
Q ss_pred CCeeeEEEEeCCC--CEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCCCccc-ceeEEecCCCC---------
Q 017014 79 DGSCVAKMGFENG--STATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTPAIQG-GLSSAFSCGSD--------- 146 (379)
Q Consensus 79 ~gl~~v~L~~~~g--ssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggkaIRG-GVPICfPfg~~--------- 146 (379)
.+.....|++.++ -.++|.-+||.|++|+.. ++++|+.-.. ++....-++ |-++++|+-+.
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~~-----~~~v~l~~~~--~~~~~~~~~~~ga~l~p~anRI~~g~f~~~ 80 (308)
T COG2017 8 DGQPVRLLTLGNGGGMVVTVPDWGATLTSLRVN-----GRNLLLGFDD--AESYPATRGYGGAILGPYANRISNGRFTLD 80 (308)
T ss_pred CCCceEEEEEeCCCeEEEEEccCCcEEEEEEEC-----CceEEeecCC--HHHhccccccccceecCccCcccCCEEEEC
Confidence 4555666776665 478888999999999984 3577766664 455566666 66777775541
Q ss_pred ---------------CCCcCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEeCCceEEEEEEEeCCCCc
Q 017014 147 ---------------GEVWSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLNEASVSSELVVSNFRSSS 207 (379)
Q Consensus 147 ---------------~~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~p 207 (379)
.+++|...|++.+...+++. .++|.+.+. |..|+++++-+|.++.|+++++++|.++++
T Consensus 81 G~~y~L~~N~~~~~lHG~~~~~~~~v~~~~~~~~~--~~~l~~~~~~~gyP~~l~~~vtY~L~~~~L~v~~~~~n~~~~~ 158 (308)
T COG2017 81 GKTYQLPPNEGGNALHGGARDFDWQVWEAEEDDNA--EFSLVLRDGEDGYPGNLEATVTYTLNEDGLTVTYEVTNDGDEP 158 (308)
T ss_pred CEEEEeCCCCCCccccCCccCCCeeEEEEEeccCC--EEEEEecccCCCCCceEEEEEEEEEcCCCEEEEEEEEeCCCCc
Confidence 12899999999888655444 455555433 456777777778778899999999999999
Q ss_pred chhhhhhccceecCCCCc
Q 017014 208 LQLAGSIISHLTVSTPEA 225 (379)
Q Consensus 208 f~ft~ALHTYf~VsDi~~ 225 (379)
..|....|.||..+...+
T Consensus 159 ~p~~~g~HpYFnl~~~~~ 176 (308)
T COG2017 159 TPFNLGNHPYFNLPGDGR 176 (308)
T ss_pred ceecccccceEecCCCCC
Confidence 999999999999997654
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=98.64 E-value=6.2e-07 Score=88.26 Aligned_cols=131 Identities=14% Similarity=0.188 Sum_probs=88.2
Q ss_pred EEEeCCCCEEEEEcCCeEEEEEeecccCCCc-ceeEEecCC-CCCCCCCCcccce------------------eEEecC-
Q 017014 85 KMGFENGSTATLMLPSGLITSYKAHMWHGGT-VELLHTIVS-EGKDGTPAIQGGL------------------SSAFSC- 143 (379)
Q Consensus 85 ~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~-~elL~lS~~-A~~dggkaIRGGV------------------PICfPf- 143 (379)
.|+..++.+++|.-+||.|.||+-+.. +|. .++||-.+. +.|....+..|.+ ..-+|.
T Consensus 3 ~l~n~~~~~~~i~~~GA~l~~l~~~~~-~g~~~~~v~~~~~~~~~~~~~~~~g~~lgp~anRi~~g~~~~~G~~y~l~~N 81 (326)
T cd09019 3 TLTNGNGLRVSILNYGATIQSLKVPDK-NGKLRDVVLGFDDLEDYLKNSPYFGATVGRVANRIANGRFTLDGKTYQLEAN 81 (326)
T ss_pred EEECCCCcEEEEECcCcEEEEEEEECC-CCCEeeeEECCCCHHHHhhCCCccCCcccCcCCeecCCEEEECCEEEEccCC
Confidence 455545689999999999999987521 122 688888753 3344333555532 222221
Q ss_pred -CC---CC---CCcCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEeC-CceEEEEEEEeCCCCcchhh
Q 017014 144 -GS---DG---EVWSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLNE-ASVSSELVVSNFRSSSLQLA 211 (379)
Q Consensus 144 -g~---~~---~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~~-~~L~l~L~V~Ntg~~pf~ft 211 (379)
++ +| +|+|. .|++.... +++|.++|...+. |..|+++++.+|.+ +.|+++++++| ++++.|.
T Consensus 82 e~~~~LHGg~~G~~~~-~w~~~~~~---~~~v~l~~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~--~~~~p~~ 155 (326)
T cd09019 82 EGPNHLHGGPKGFDKR-VWDVEEVE---ENSVTFSLVSPDGEEGFPGNLTVTVTYTLTDDNELTIEYEATT--DKPTPVN 155 (326)
T ss_pred CCCcccCCCCccccCc-EEeEEecc---CCEEEEEEECCcccCCCCeEEEEEEEEEECCCCEEEEEEEEEe--CCCeEec
Confidence 11 01 25676 99996643 3467777766532 45677777888876 79999999998 4888889
Q ss_pred hhhccceecCC
Q 017014 212 GSIISHLTVST 222 (379)
Q Consensus 212 ~ALHTYf~VsD 222 (379)
-..|.||.++.
T Consensus 156 ~g~HpyFnl~~ 166 (326)
T cd09019 156 LTNHSYFNLAG 166 (326)
T ss_pred ccceeeEecCC
Confidence 99999999983
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=98.62 E-value=8.8e-07 Score=88.15 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=85.4
Q ss_pred eEEEEeCCC-CEEEEEcCCeEEEEEeecccCCCcceeEEecCCC-CCCCCCCcccceeEEecCCC---------------
Q 017014 83 VAKMGFENG-STATLMLPSGLITSYKAHMWHGGTVELLHTIVSE-GKDGTPAIQGGLSSAFSCGS--------------- 145 (379)
Q Consensus 83 ~v~L~~~~g-ssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A-~~dggkaIRGGVPICfPfg~--------------- 145 (379)
.-.+++.|+ .+++|.-+||.|+||+-+.+++..++++---+.. .|....+..|.+ +.|+.+
T Consensus 9 ~~~~~L~n~~l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~Ga~--lgp~anRI~~g~~~~~G~~y~ 86 (337)
T PLN00194 9 PGIYELKNGNISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYFGAI--VGRVANRIKGAKFTLNGVTYK 86 (337)
T ss_pred eEEEEEEeCCEEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCCe--eCCCCCceeCCEEEECCEEEE
Confidence 444555566 6999999999999998754332224444222211 132222333322 333211
Q ss_pred ----------CC---CCcCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEe-CCceEEEEEEEeCCCCc
Q 017014 146 ----------DG---EVWSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLN-EASVSSELVVSNFRSSS 207 (379)
Q Consensus 146 ----------~~---~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~-~~~L~l~L~V~Ntg~~p 207 (379)
+| +|. ...|++.....++...|.+.|...+. |..|+++++.+|. +++|+++++++|. ++|
T Consensus 87 l~~N~~~~~lHGg~~G~~-~~~w~v~~~~~~~~~~v~~~l~~~~~~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~-~~~ 164 (337)
T PLN00194 87 LPPNNGPNSLHGGPKGFS-KVVWEVAKYKKGEKPSITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPL-NKA 164 (337)
T ss_pred eccCCCCcccCCCCcccC-ceEEeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEECCCCeEEEEEEEEEC-CCC
Confidence 11 144 48999976554333467777765432 3466667777785 4789999999999 999
Q ss_pred chhhhhhccceecC
Q 017014 208 LQLAGSIISHLTVS 221 (379)
Q Consensus 208 f~ft~ALHTYf~Vs 221 (379)
+.|.-+.|+||..+
T Consensus 165 ~p~~~g~HpYFnL~ 178 (337)
T PLN00194 165 TPVNLAQHTYWNLA 178 (337)
T ss_pred eEEEccccceEEcC
Confidence 99999999999996
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=97.86 E-value=0.00027 Score=70.37 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=83.6
Q ss_pred eEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEecC-CCCCCCCCCcccce------------------eEEec-
Q 017014 83 VAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIV-SEGKDGTPAIQGGL------------------SSAFS- 142 (379)
Q Consensus 83 ~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~-~A~~dggkaIRGGV------------------PICfP- 142 (379)
++.|+..+|-+++|.-+||.|.||+.+. ++...+|+---+ .+.|....+-.|.+ ..-.|
T Consensus 6 ~~~l~n~~g~~v~i~~~GA~i~~l~~pd-~~~~~~vvlg~~~~~~y~~~~~~~Ga~igp~anRI~~g~f~~~G~~y~L~~ 84 (335)
T TIGR02636 6 LITLTNNNGMTISFMDIGATWLSCQVPL-AGELREVLLGFASMEEYYKQDAYLGATVGRYANRIANGSFEIDGETYQLSI 84 (335)
T ss_pred EEEEECCCCcEEEEeCcCcEEEEEEeeC-CCCccceEECCCCHHHHhhCCCccCCCcCCCCceecCCEEEECCEEEEecc
Confidence 4566666778999999999999998642 122234442222 12232222333332 22221
Q ss_pred -CCCC--CCCc---CccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEE-eCCceEEEEEEEeCCCCcchhh
Q 017014 143 -CGSD--GEVW---SPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTL-NEASVSSELVVSNFRSSSLQLA 211 (379)
Q Consensus 143 -fg~~--~~FA---R~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL-~~~~L~l~L~V~Ntg~~pf~ft 211 (379)
.+++ .++. +.+.|++.... ..++|++.+...+. |..+.++++.+| .++.|+++++++ +++|..|.
T Consensus 85 N~~~n~lHGg~~G~~~~~W~v~~~~--~~~~v~l~~~~~~~~~gyPg~l~~~vtY~L~~~~~L~i~~~a~--~d~~tp~n 160 (335)
T TIGR02636 85 NQGGNCLHGGPEGFDKRRWNIEELQ--EEVQVKFSLESPDGDQGFPGNLTVSVTYTLTDDNELTIEYEAT--TDKATPFN 160 (335)
T ss_pred CCCCcccCCCCccccccEEeEeeec--CCCEEEEEEECCCcCCCCCeEEEEEEEEEECCCCEEEEEEEEE--ECCceEEe
Confidence 1111 1244 78899986521 22466666665432 346666777778 457899999998 78899999
Q ss_pred hhhccceecCC
Q 017014 212 GSIISHLTVST 222 (379)
Q Consensus 212 ~ALHTYf~VsD 222 (379)
-+.|+||..+.
T Consensus 161 lt~H~YFnL~g 171 (335)
T TIGR02636 161 LTNHVYFNLDG 171 (335)
T ss_pred ccccceEEcCC
Confidence 99999999975
No 15
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=97.69 E-value=0.001 Score=67.92 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=92.9
Q ss_pred ceEEEecCCeeeEEEEeCCCCEEEEEcCCeEEEEEeecccCCCc-ceeEEecC--CCCCCCCCCccc-------------
Q 017014 72 GVTFEDIDGSCVAKMGFENGSTATLMLPSGLITSYKAHMWHGGT-VELLHTIV--SEGKDGTPAIQG------------- 135 (379)
Q Consensus 72 gvtf~~~~gl~~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~-~elL~lS~--~A~~dggkaIRG------------- 135 (379)
|+.++.-+.+.++.|+..+ -+++|.-+||.|+|++-+.=..|. ++|+-=-+ .+.|....+..|
T Consensus 4 ~~~~~~~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y~Ga~iGr~AnRI~~G 82 (376)
T PTZ00485 4 GIEVEPYGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDYMGATVGRCAGRVAGG 82 (376)
T ss_pred eeEEEecCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCccCcEeCCCCCeEECC
Confidence 5667766677788888755 899999999999999853100132 35544332 233432223322
Q ss_pred -----ceeEEec--CCC---CCC--CcCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEe---CCceEE
Q 017014 136 -----GLSSAFS--CGS---DGE--VWSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLN---EASVSS 196 (379)
Q Consensus 136 -----GVPICfP--fg~---~~~--FAR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~---~~~L~l 196 (379)
|....+| .+. +++ ..-...|++......+..+|++.+...+. |..++++++-+|. ++.|++
T Consensus 83 ~f~ldG~~YqL~~Neg~n~LHGG~~gf~~~~W~v~~~~~~~~~~V~f~~~~~dg~~GfPG~l~v~vtYtL~~~~~~~L~i 162 (376)
T PTZ00485 83 VFTLDGVKYYTQKNRGENTCHCGDDAYHKKHWGMKLIETANVIGVRFNYTSPHMENGFPGELVSKVTYSIERSKPNVLKT 162 (376)
T ss_pred EEEECCEEEEccCCCCCcccCCCCCccceeeeeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEEecCCCCEEEE
Confidence 2333332 111 111 34578999854432222356666655322 3455666666674 478999
Q ss_pred E---EEEEeCCCCcchhhhhhccceecCC
Q 017014 197 E---LVVSNFRSSSLQLAGSIISHLTVST 222 (379)
Q Consensus 197 ~---L~V~Ntg~~pf~ft~ALHTYf~VsD 222 (379)
+ ++++|+++++.-|.-.-|+||.++.
T Consensus 163 ~y~a~~~~n~~d~~Tp~nltnH~YFNL~g 191 (376)
T PTZ00485 163 IYDSYIPETSPADATPVNIFNHAYWNLNG 191 (376)
T ss_pred EEEEEeccccCCccceeeeccceeEEcCC
Confidence 9 8999999999999999999999964
No 16
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=97.62 E-value=0.0017 Score=65.16 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=78.1
Q ss_pred eEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEec-CCCCCCCCCCcccce------------------eEEec-
Q 017014 83 VAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTI-VSEGKDGTPAIQGGL------------------SSAFS- 142 (379)
Q Consensus 83 ~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS-~~A~~dggkaIRGGV------------------PICfP- 142 (379)
++.|+..+|.+++|.-+||.|+||+-+..++...+|+--- ..+.|....+-.|.+ -.-+|
T Consensus 11 ~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G~~y~L~~ 90 (342)
T PRK11055 11 LLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGASVGRYANRIANSRFTLDGETYQLSP 90 (342)
T ss_pred EEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCceeCCcCCcccCCEEEECCEEEEccc
Confidence 3455555678999999999999998653212224554222 112232222333332 22222
Q ss_pred -CCC---CCCC--cCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEeCC-ceEEEEEEEeCCCCcchhh
Q 017014 143 -CGS---DGEV--WSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLNEA-SVSSELVVSNFRSSSLQLA 211 (379)
Q Consensus 143 -fg~---~~~F--AR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~~~-~L~l~L~V~Ntg~~pf~ft 211 (379)
.++ +|+. .+...|++.... +++|++.+...+. |..+.++++.+|.++ .|++++++ ++++|..|.
T Consensus 91 N~~~n~lHGg~~G~~~~~W~v~~~~---~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a--~~d~~tp~n 165 (342)
T PRK11055 91 NQGGNQLHGGPEGFDKRRWQIVNQN---DRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRA--TVDKPCPVN 165 (342)
T ss_pred CCCCcccCCCCcccCCcEEEEEEcc---CCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEE--EcCCCeEEe
Confidence 111 1111 277899986543 2467777766432 345555666667543 55555555 578999999
Q ss_pred hhhccceecCC
Q 017014 212 GSIISHLTVST 222 (379)
Q Consensus 212 ~ALHTYf~VsD 222 (379)
-..|+||..+.
T Consensus 166 lt~H~YFnL~g 176 (342)
T PRK11055 166 LTNHAYFNLDG 176 (342)
T ss_pred ccccceEECCC
Confidence 99999999963
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=97.44 E-value=0.0012 Score=64.17 Aligned_cols=74 Identities=11% Similarity=-0.048 Sum_probs=54.9
Q ss_pred CcCccCcEEeeecCC--CCccEEEEEeeCCC---CCceEEEEEE--EEeCCceEEEEEEEeCCCCcchhhhhhccceecC
Q 017014 149 VWSPCNWTLHDISGN--PQEFIQVELISSDT---VDMVEIRCIV--TLNEASVSSELVVSNFRSSSLQLAGSIISHLTVS 221 (379)
Q Consensus 149 FAR~~~W~l~~~~~~--~~~~v~l~L~ls~~---~~~F~L~~~V--tL~~~~L~l~L~V~Ntg~~pf~ft~ALHTYf~Vs 221 (379)
+.++..|++.....+ +...|.|+...... .++|.|+.+| +++++.|+++++|+|.|+.|+.+.-..|.||..+
T Consensus 76 ~~~~~p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~VtN~g~~~~P~~~~~H~n~~~p 155 (284)
T cd09023 76 RISNTPAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDRVTNEGFRPTPHMLLYHVNFGYP 155 (284)
T ss_pred cccCCCcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEEEEeCCCCCCcceEEeeEEcCCc
Confidence 799999999877643 22345555554321 1355555555 5678999999999999999999999999999875
Q ss_pred C
Q 017014 222 T 222 (379)
Q Consensus 222 D 222 (379)
-
T Consensus 156 ~ 156 (284)
T cd09023 156 L 156 (284)
T ss_pred c
Confidence 3
No 18
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=94.37 E-value=1.2 Score=43.35 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=69.1
Q ss_pred EEEeCCC-CEEEEEc-CCeEEEEEeecccCCCcceeEEecCCCC------CCCCCCcccceeEEe--cCC---------C
Q 017014 85 KMGFENG-STATLML-PSGLITSYKAHMWHGGTVELLHTIVSEG------KDGTPAIQGGLSSAF--SCG---------S 145 (379)
Q Consensus 85 ~L~~~~g-ssA~I~L-~GAhVtSwkp~~w~~g~~elL~lS~~A~------~dggkaIRGGVPICf--Pfg---------~ 145 (379)
++++.|+ .+++|.. .||.|++|... |++.+||.-.... .+..-.++||= -.| |+. .
T Consensus 6 ~~~l~N~~i~l~Vtp~~GgRIl~~~~~----g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~ 80 (274)
T PF14315_consen 6 CLRLSNGDIELIVTPDVGGRILSFGLN----GGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWP 80 (274)
T ss_pred EEEEECCCEEEEEecCCCCEEEEEEeC----CCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCC
Confidence 4566677 4777774 56799999875 4556663333221 12234455555 444 441 0
Q ss_pred CCCCcCccCcEEeeecCCCCccEEEEEeeCCCC-CceEEEEEEEEeCCc--eEEEEEEEeCCCCcchhhh
Q 017014 146 DGEVWSPCNWTLHDISGNPQEFIQVELISSDTV-DMVEIRCIVTLNEAS--VSSELVVSNFRSSSLQLAG 212 (379)
Q Consensus 146 ~~~FAR~~~W~l~~~~~~~~~~v~l~L~ls~~~-~~F~L~~~VtL~~~~--L~l~L~V~Ntg~~pf~ft~ 212 (379)
..++.-+..|++.. ..-.|+|+...++ ..++++.+|+|.++. +.++-+++|.++.|+.+.-
T Consensus 81 Pd~~ld~~p~~~~~------~~~~v~L~s~~~~~tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a~ 144 (274)
T PF14315_consen 81 PDPVLDNGPYEVEI------DDDGVRLTSPPSPKTGIQKERTITLDADRPSIEVTHRITNIGDWPVEWAP 144 (274)
T ss_pred CcccccCCceeEEE------cCCEEEEecCCCCccCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceeee
Confidence 00123334444433 1224566554443 468999999996555 9999999999999887654
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=93.83 E-value=0.32 Score=48.31 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=39.4
Q ss_pred CCceEEEEEEEEeC--CceEEEEEEEeCCCCcchhhhhhccceec
Q 017014 178 VDMVEIRCIVTLNE--ASVSSELVVSNFRSSSLQLAGSIISHLTV 220 (379)
Q Consensus 178 ~~~F~L~~~VtL~~--~~L~l~L~V~Ntg~~pf~ft~ALHTYf~V 220 (379)
++.+.++-+|+|.. +.|.++++|+|.++.|+.+.-.+|-||..
T Consensus 102 g~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~~~~~H~nfg~ 146 (293)
T cd09269 102 GHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPLMYMCHMNYAY 146 (293)
T ss_pred CccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChhhEecccccCC
Confidence 46889999999865 89999999999999999999999999986
No 20
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=84.21 E-value=29 Score=34.82 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=67.9
Q ss_pred EEeCCC-CEEEEEcCCeEEEEEeecccCC----CcceeEEecCCCCCCCCCCcccceeEEecCCCCCC----CcCccCcE
Q 017014 86 MGFENG-STATLMLPSGLITSYKAHMWHG----GTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSDGE----VWSPCNWT 156 (379)
Q Consensus 86 L~~~~g-ssA~I~L~GAhVtSwkp~~w~~----g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~~~----FAR~~~W~ 156 (379)
+.+++. -+++|.+.||.|.++.=+..+. +.+++..++... ...-..+-|. .+.++. ......|+
T Consensus 76 i~v~td~~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~--~~~y~~~~gl-----~~~~~~~~~~~~~~~~~~ 148 (366)
T TIGR03593 76 ITVKTDVLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA--ERLYVAQSGL-----IGANGADLALPGHRTVWQ 148 (366)
T ss_pred EEEECCeEEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC--CceeEEEecc-----ccCCCCcccCCCCCceEE
Confidence 555555 5899999999999997553221 223454444332 1111111121 111111 14556788
Q ss_pred Eeeec--CCCCccEEEEEeeCCCCCceEEEEEEEEeCC--ceEEEEEEEeCCCCcchh
Q 017014 157 LHDIS--GNPQEFIQVELISSDTVDMVEIRCIVTLNEA--SVSSELVVSNFRSSSLQL 210 (379)
Q Consensus 157 l~~~~--~~~~~~v~l~L~ls~~~~~F~L~~~VtL~~~--~L~l~L~V~Ntg~~pf~f 210 (379)
..... ..+ +...|+|+... ...+.++.+++|.++ .+.++++|+|.++.+++.
T Consensus 149 ~~~~~~~l~~-~~~~v~l~~~~-~~G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~~ 204 (366)
T TIGR03593 149 AEGGEYTLTP-GQLPVTLTWDN-SNGVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVSL 204 (366)
T ss_pred eCCCceeeCC-CCEEEEEEEEC-CCCeEEEEEEEEeCCeEEEEeEEEEEeCCCCCeeE
Confidence 86542 122 23456665443 246888899999766 688899999999988874
No 21
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=79.62 E-value=22 Score=33.68 Aligned_cols=121 Identities=15% Similarity=0.120 Sum_probs=58.4
Q ss_pred EEeCCC-CEEEEEcCCeEEEEEeeccc----CCCcceeEEecCCCCCCCCCCcccceeEEecCCCCCCCcCccCcEEeee
Q 017014 86 MGFENG-STATLMLPSGLITSYKAHMW----HGGTVELLHTIVSEGKDGTPAIQGGLSSAFSCGSDGEVWSPCNWTLHDI 160 (379)
Q Consensus 86 L~~~~g-ssA~I~L~GAhVtSwkp~~w----~~g~~elL~lS~~A~~dggkaIRGGVPICfPfg~~~~FAR~~~W~l~~~ 160 (379)
+.++|. -.+++...||.|.||+=+.. .+++.++--+.+.... .-..++.+.+.-.+...-.++..|++...
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~f~~~~~ 77 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDEE----NYPLAFGLVFNTGGAQLPTNDLYFSVSQK 77 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETTE----EEEEEEEEESTT--TTSGGS--B-B-S-S
T ss_pred EEEECCCEEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCCc----ceEEEEcccccCccccCCCccceEEEcCC
Confidence 455566 68999999999999975422 1112233222221100 01134444443221111226677887653
Q ss_pred c---CCCCccEEEEEeeCCCCCceEEEEEEEEeCC--ceEEEEEEEeCCCCcchhh
Q 017014 161 S---GNPQEFIQVELISSDTVDMVEIRCIVTLNEA--SVSSELVVSNFRSSSLQLA 211 (379)
Q Consensus 161 ~---~~~~~~v~l~L~ls~~~~~F~L~~~VtL~~~--~L~l~L~V~Ntg~~pf~ft 211 (379)
. ....+...|+|+.... ..+.++.+.+|.++ .+.+++.++|.+..+++..
T Consensus 78 ~~~l~~~~~~~~vtf~~~~~-~g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~~ 132 (270)
T PF14849_consen 78 SYTLKEGGDSQSVTFTAQLG-NGLTITKTYTFKPDSYLVDLEISVTNLSDQPVSLS 132 (270)
T ss_dssp EEE--TT-SEEEEEEEEE-T-TS-EEEEEEEEETT--EEEEEEEEE--SSS-EEEE
T ss_pred ceeeccCCCceEEEEEEECC-CCEEEEEEEEEcCCcEEEEEEEEEECCCCCccccc
Confidence 1 1122455566665544 34899999999754 5777778889988888763
No 22
>PRK01318 membrane protein insertase; Provisional
Probab=72.52 E-value=77 Score=34.28 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=66.3
Q ss_pred EEEeCCC-CEEEEEcCCeEEEEEeecccCCC-c--ceeEEecCCCCCCCCCCcccceeEEecCCCCC-C-C-cC-ccCcE
Q 017014 85 KMGFENG-STATLMLPSGLITSYKAHMWHGG-T--VELLHTIVSEGKDGTPAIQGGLSSAFSCGSDG-E-V-WS-PCNWT 156 (379)
Q Consensus 85 ~L~~~~g-ssA~I~L~GAhVtSwkp~~w~~g-~--~elL~lS~~A~~dggkaIRGGVPICfPfg~~~-~-F-AR-~~~W~ 156 (379)
.+.+++. -.++|.+.||.|.++.=+..+.. + +++--+++.+. ..-..+=|. .+.++ . + .. +..|+
T Consensus 40 ~i~v~td~~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~--~~y~~~~g~-----~~~~~~~~~~~~~~~~~~ 112 (521)
T PRK01318 40 RITVETDVLRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE--HPYFAQSGL-----TGADGPDNVPNPDRTLYT 112 (521)
T ss_pred EEEEEcCcEEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC--cceeeeecc-----ccCCCcccccCCCCccee
Confidence 4555565 58999999999999976532211 1 23444444311 111111111 11111 1 1 11 45787
Q ss_pred EeeecC---CCCccEEEEEeeCCCCCceEEEEEEEEeCCc--eEEEEEEEeCCCCcchhhh
Q 017014 157 LHDISG---NPQEFIQVELISSDTVDMVEIRCIVTLNEAS--VSSELVVSNFRSSSLQLAG 212 (379)
Q Consensus 157 l~~~~~---~~~~~v~l~L~ls~~~~~F~L~~~VtL~~~~--L~l~L~V~Ntg~~pf~ft~ 212 (379)
.+.... ++++...|+|+... ...+.++.++++.+++ +.++++++|.++.|+++..
T Consensus 113 ~~~~~~~~~~~~~~~~v~~~~~~-~~g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~~~ 172 (521)
T PRK01318 113 ADGDSLVLADGQNELPVTLTWTN-GNGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNLSP 172 (521)
T ss_pred ecccceeeccCCCceEEEEEEEC-CCCeEEEEEEEEcCCceEEEEEEEEEcCCCCceeeee
Confidence 763221 12245556666543 2468888888886443 8899999999888876543
No 23
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=68.70 E-value=1.2e+02 Score=31.37 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=73.3
Q ss_pred eEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcce-eEEecCCCCCCC-CCCccc------------------ceeEEec
Q 017014 83 VAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVE-LLHTIVSEGKDG-TPAIQG------------------GLSSAFS 142 (379)
Q Consensus 83 ~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~e-lL~lS~~A~~dg-gkaIRG------------------GVPICfP 142 (379)
...|...+|-+|+|.-+||.|+|-+-+.-.+..++ +|=-..-+.|.. ..+--| |-+.-..
T Consensus 22 ~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGatvGRvANRI~~G~F~ldgk~y~lt 101 (353)
T KOG1604|consen 22 VYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGATVGRVANRIAKGKFSLDGKPYKLT 101 (353)
T ss_pred EEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecceehhhhhhcccceEEECCceEEec
Confidence 44455545569999999999999987632111223 342222233333 111111 3333332
Q ss_pred --CCC---CCCC--cCccCcEEeeecCCCCccEEEEEeeCCC----CCceEEEEEEEEe-CCceEEEEEEEeCCCCcchh
Q 017014 143 --CGS---DGEV--WSPCNWTLHDISGNPQEFIQVELISSDT----VDMVEIRCIVTLN-EASVSSELVVSNFRSSSLQL 210 (379)
Q Consensus 143 --fg~---~~~F--AR~~~W~l~~~~~~~~~~v~l~L~ls~~----~~~F~L~~~VtL~-~~~L~l~L~V~Ntg~~pf~f 210 (379)
-+. ++++ ---..|++...+.++ .+.+.-.+.+. |.++++.++.||. ++.|.+.+..+=. +++=.+
T Consensus 102 ~N~g~n~lHgg~~gf~~~~w~v~~~~~~~--~i~f~~~s~dg~eg~PG~l~V~vtYtLn~~n~l~i~~~A~~~-~~~TPi 178 (353)
T KOG1604|consen 102 VNNGKNTLHGGIKGFDKVIWEVVKHQPDG--VIVFSHLSPDGDEGFPGDLKVTVTYTLNVANRLLIMMEATAL-DKATPI 178 (353)
T ss_pred ccCCCccccCCcccccceEEEEEEecCCC--EEEEEEECCCCCCCCCccEEEEEEEEEccCCeeeeeehhhcc-CCCcce
Confidence 111 1221 233579998877533 22333332222 3466666666663 4666666655443 455555
Q ss_pred hhhhccceecCCC
Q 017014 211 AGSIISHLTVSTP 223 (379)
Q Consensus 211 t~ALHTYf~VsDi 223 (379)
.-+-||||...-.
T Consensus 179 NLtnHsYfNL~g~ 191 (353)
T KOG1604|consen 179 NLTNHSYFNLAGH 191 (353)
T ss_pred eeccceeEeccCC
Confidence 6678999997653
No 24
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=67.23 E-value=46 Score=33.19 Aligned_cols=138 Identities=12% Similarity=-0.019 Sum_probs=69.5
Q ss_pred CCeeeEEEEeCCCCEEEEEcCCeEEEEEeecccCCCcceeEEecCCCCCCCCC--------Cccccee----EEec--CC
Q 017014 79 DGSCVAKMGFENGSTATLMLPSGLITSYKAHMWHGGTVELLHTIVSEGKDGTP--------AIQGGLS----SAFS--CG 144 (379)
Q Consensus 79 ~gl~~v~L~~~~gssA~I~L~GAhVtSwkp~~w~~g~~elL~lS~~A~~dggk--------aIRGGVP----ICfP--fg 144 (379)
.|...+.|++..|-+.+|...-|+-+..--- ++.++-|.|+.. .-.+. .+-.|.- -|=+ .|
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~----~G~~l~w~s~~~-~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G 76 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF----DGVNLGWHSPFG-LVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNG 76 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE----TTEEE----S------GGG--HHHHTGGGGT---SEEEEEES--S
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE----CCEEecccCCCc-CCCCccccccCCcchhhcccchheeeccccCC
Confidence 3555566665555688888887776643221 357899999874 11222 2222333 2211 22
Q ss_pred C----CC------CCcCccCcEEeeecCCCCc--cEEEEEeeCC---CCCceEEEEEEEE--eCCceEEEEEEEeCCCCc
Q 017014 145 S----DG------EVWSPCNWTLHDISGNPQE--FIQVELISSD---TVDMVEIRCIVTL--NEASVSSELVVSNFRSSS 207 (379)
Q Consensus 145 ~----~~------~FAR~~~W~l~~~~~~~~~--~v~l~L~ls~---~~~~F~L~~~VtL--~~~~L~l~L~V~Ntg~~p 207 (379)
. ++ +=.++.+|+.......+++ .+.|+=.... -.+.+.|+=+|++ +...+.++-+|+|.+..|
T Consensus 77 ~P~~~~g~~~~LHG~i~~~Pa~~v~~~~~~~~~~~i~v~G~v~~~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~~~p 156 (302)
T PF14486_consen 77 APSEDDGETYPLHGRISNTPAEHVWLEIWDGDGYEIEVSGEVREAAGFGENLRLERTIRLRAGSNTIRIEDRVTNLGFQP 156 (302)
T ss_dssp S-EEETTEEE-TTBSGGGS--SEEEEEEESSTT--EEEEEEEEEEETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SSS-
T ss_pred CCCCcCCccccccccccCCCcceEEEEEecCCCcEEEEEEEEEEEEeccCcEEEEEEEEEECCCcEEEEEEEEEECCCCC
Confidence 2 11 1266677765544332222 3333322221 1246777777777 678899999999999999
Q ss_pred chhhhhhccceecC
Q 017014 208 LQLAGSIISHLTVS 221 (379)
Q Consensus 208 f~ft~ALHTYf~Vs 221 (379)
+.+.-..|--|.-.
T Consensus 157 ~p~m~lyH~N~G~p 170 (302)
T PF14486_consen 157 MPLMYLYHMNFGYP 170 (302)
T ss_dssp EEEEEEEEEEE-TT
T ss_pred chhHHhhhhccCcc
Confidence 99999999877655
No 25
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=55.71 E-value=11 Score=32.60 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=24.5
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|+|..+.=.++|.|+|+||.|+++..-+|=
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF 42 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDRPIQVGSHFHF 42 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCcceEEccccch
Confidence 556556778999999999999998876663
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=54.44 E-value=11 Score=32.56 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=24.7
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|+|-.....++++|.|+|+.|+++-.-+|=
T Consensus 13 IelN~gr~~~~i~V~NtGDRPIQVGSHfHF 42 (106)
T COG0832 13 IELNAGRPTVTIEVANTGDRPIQVGSHFHF 42 (106)
T ss_pred EEEeCCCcceEEEEeecCCCceEeecceee
Confidence 566556788999999999999998877763
No 27
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=54.23 E-value=10 Score=32.68 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=21.9
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|+|..+.=.++|+|+|+||.|+++..-+|=
T Consensus 12 I~lN~gr~~~~l~V~N~GDRPIQVGSH~HF 41 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDRPIQVGSHYHF 41 (100)
T ss_dssp EETTTTSEEEEEEEEE-SSS-EEEETTS-G
T ss_pred EEecCCCcEEEEEEEeCCCcceEEccccCH
Confidence 556567789999999999999998876663
No 28
>PRK13203 ureB urease subunit beta; Reviewed
Probab=54.14 E-value=12 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=24.7
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhccc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIISH 217 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTY 217 (379)
|.|-.+.=.++|.|+|+|+.|+++..-+|=|
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~ 43 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDRPIQVGSHYHFF 43 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCCceEEccccchh
Confidence 5555566789999999999999998766643
No 29
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=53.97 E-value=12 Score=32.26 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=24.5
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|+|..+.=.++|.|+|+|+.|+++..-+|=
T Consensus 13 I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF 42 (101)
T cd00407 13 IELNAGREAVTLKVKNTGDRPIQVGSHYHF 42 (101)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEEccccch
Confidence 556556778999999999999998876663
No 30
>PRK13202 ureB urease subunit beta; Reviewed
Probab=50.73 E-value=15 Score=31.78 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=23.3
Q ss_pred EEEeCCc-eEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEAS-VSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~-L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|+|..+. =.++|+|+|+|+.|+++..-+|=
T Consensus 13 I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF 43 (104)
T PRK13202 13 IEMNAAALSRLQMRIINAGDRPVQVGSHVHL 43 (104)
T ss_pred EEeCCCCCceEEEEEEeCCCCceEEccccch
Confidence 5554443 57899999999999998876663
No 31
>PRK13201 ureB urease subunit beta; Reviewed
Probab=47.43 E-value=17 Score=32.79 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=24.9
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhccc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIISH 217 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTY 217 (379)
|+|-.+.=.++|.|+|+|+.|+++..-+|=|
T Consensus 13 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~ 43 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDRPIQVGSHFHFY 43 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEeccccchh
Confidence 5565567789999999999999998777643
No 32
>PRK13204 ureB urease subunit beta; Reviewed
Probab=45.53 E-value=19 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.9
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|+|..+.=.++|.|+|+|+.|+++..-+|=
T Consensus 36 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF 65 (159)
T PRK13204 36 IEINQGRPRTTLTVRNTGDRPIQIGSHFHF 65 (159)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccch
Confidence 566566778999999999999999876663
No 33
>PRK13198 ureB urease subunit beta; Reviewed
Probab=45.08 E-value=19 Score=33.19 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=25.4
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhccc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIISH 217 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTY 217 (379)
|.|..+.=.++|.|+|+|+.|+++..-+|=|
T Consensus 41 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~ 71 (158)
T PRK13198 41 ITFNENKPVTKVKVRNTGDRPIQVGSHFHFF 71 (158)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccchh
Confidence 6666667889999999999999998777643
No 34
>PRK13205 ureB urease subunit beta; Reviewed
Probab=44.37 E-value=20 Score=33.11 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=24.4
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|.|-.+.=.++|+|+|+|+.|+++..-+|=
T Consensus 13 IelN~GR~~i~L~V~NtGDRPIQVGSHyHF 42 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDRPVQIGSHFHF 42 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccch
Confidence 555556778999999999999998876664
No 35
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=35.45 E-value=1.4e+02 Score=27.70 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCceEEEEEEEEeCCceEEEEEEEeCCCCcchhhhhhc
Q 017014 178 VDMVEIRCIVTLNEASVSSELVVSNFRSSSLQLAGSII 215 (379)
Q Consensus 178 ~~~F~L~~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALH 215 (379)
+..+.++-+-.|+++ |.=+|+++|.+..|+.++-.|.
T Consensus 78 ~~~l~l~R~r~v~~~-~~E~l~l~N~~~~pv~~~l~l~ 114 (194)
T PF14742_consen 78 DGTLHLRRERFVGGG-LYERLTLTNYSPEPVELTLSLE 114 (194)
T ss_pred CCeEEEEEEEEECCC-CEEEEEEEeCCCCCEEEEEEEE
Confidence 357888888889866 9999999999999998876654
No 36
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=31.63 E-value=39 Score=32.58 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=24.9
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhccc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIISH 217 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTY 217 (379)
|.|..+.=.++|.|+|+|+.|+++..-+|=|
T Consensus 122 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~ 152 (208)
T PRK13192 122 IELNAGRPAVTLDVTNTGDRPIQVGSHFHFF 152 (208)
T ss_pred eeeCCCCCEEEEEEEeCCCCceeeccccchh
Confidence 5565567789999999999999998766643
No 37
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=31.61 E-value=33 Score=27.90 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=14.1
Q ss_pred ceEEEEEEEeCCCCcchhh
Q 017014 193 SVSSELVVSNFRSSSLQLA 211 (379)
Q Consensus 193 ~L~l~L~V~Ntg~~pf~ft 211 (379)
++.+.|+++|.++++++++
T Consensus 1 ~v~~~l~v~N~s~~~v~l~ 19 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQ 19 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEE
T ss_pred CEEEEEEEEeCCCCeEEEE
Confidence 4788999999999998776
No 38
>PRK13986 urease subunit alpha; Provisional
Probab=30.20 E-value=40 Score=32.82 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.5
Q ss_pred EEEeCCceEEEEEEEeCCCCcchhhhhhcc
Q 017014 187 VTLNEASVSSELVVSNFRSSSLQLAGSIIS 216 (379)
Q Consensus 187 VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHT 216 (379)
|.|..+.=.++|.|+|+|+.|+++..-+|=
T Consensus 118 I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF 147 (225)
T PRK13986 118 ITINAGKKAVSVKVKNVGDRPVQVGSHFHF 147 (225)
T ss_pred eecCCCCcEEEEEEEeCCCCceeeccccch
Confidence 556556778999999999999998876663
No 39
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=28.03 E-value=64 Score=26.00 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=22.3
Q ss_pred EEEEEeCCceEEEEEEEeCCCCcchhhhhhccc
Q 017014 185 CIVTLNEASVSSELVVSNFRSSSLQLAGSIISH 217 (379)
Q Consensus 185 ~~VtL~~~~L~l~L~V~Ntg~~pf~ft~ALHTY 217 (379)
.++......-.+.|+++|.|..++.|+-.-+.|
T Consensus 11 v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y 43 (89)
T PF05506_consen 11 VTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY 43 (89)
T ss_pred EEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc
Confidence 333333344588888899999998777655445
No 40
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=27.91 E-value=92 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCceEEEEEEEeCCCCcchhhh-hhccceecCCCCc
Q 017014 191 EASVSSELVVSNFRSSSLQLAG-SIISHLTVSTPEA 225 (379)
Q Consensus 191 ~~~L~l~L~V~Ntg~~pf~ft~-ALHTYf~VsDi~~ 225 (379)
.+.++..+.++|+|..|+.++. .++=||..++..+
T Consensus 12 ~n~i~~~~~i~Ntg~~~i~Ls~l~iRYyft~d~~~~ 47 (86)
T PF00942_consen 12 TNSIEPKFKIKNTGWPAIDLSDLKIRYYFTIDEVSA 47 (86)
T ss_dssp ESEEEEEEEEEETSSS-EEGGGEEEEEEEE-SSCCC
T ss_pred CCEEEEEEEEEECCCCCEEcCCEEEEEEEecCCCcc
Confidence 4778999999999999999988 6888888776443
No 41
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=22.34 E-value=75 Score=33.26 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.3
Q ss_pred eCCceEEEEEEEeCCCCcchhhh
Q 017014 190 NEASVSSELVVSNFRSSSLQLAG 212 (379)
Q Consensus 190 ~~~~L~l~L~V~Ntg~~pf~ft~ 212 (379)
.+.+|+++|+|+|.|++|+.+..
T Consensus 261 pgR~l~~~l~VtN~g~~pv~Lge 283 (381)
T PF04744_consen 261 PGRTLTMTLTVTNNGDSPVRLGE 283 (381)
T ss_dssp SSSEEEEEEEEEEESSS-BEEEE
T ss_pred CCcEEEEEEEEEcCCCCceEeee
Confidence 47899999999999999997654
No 42
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.
Probab=22.17 E-value=1.2e+02 Score=25.14 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=34.2
Q ss_pred CeeEEecCceeEEEeeCccccCCceEEEccchhhhhhcccccccceeEEEEEeeeeeeec
Q 017014 316 TNFTIIDRVIFSKKFSGFLSLLSKSCIFRIHASRILRMHVDESMKANIIVAFSTYCKVKK 375 (379)
Q Consensus 316 ~~~tIiD~~~~~~~~~~~~~~~s~~~v~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 375 (379)
..++|.|.....+ +.+.|+.+|...-.+... .-+-|.+||+-.+|||+.
T Consensus 25 r~~~i~D~~~~~l----------~~tlwG~~A~~f~~~~~~-~~~~~~VVav~~~~rV~~ 73 (106)
T cd04481 25 LDFEIRDLSDERL----------KCTLWGEYAEEFDAKFQS-AGNGEPVVAVLRFWKIKE 73 (106)
T ss_pred EEEEEEeCCCCEE----------EEEEEHHHHHHHHHHHHH-hCCCCcEEEEEEeEEEEE
Confidence 4677777653332 357898888876655443 456788999988999975
Done!