Query 017015
Match_columns 379
No_of_seqs 220 out of 1224
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 99.9 4.8E-27 1E-31 225.1 14.2 238 79-337 11-272 (466)
2 KOG1337 N-methyltransferase [G 99.9 1.1E-26 2.3E-31 238.1 17.3 187 160-352 112-307 (472)
3 PF00856 SET: SET domain; Int 99.7 2E-17 4.3E-22 142.7 7.0 51 269-321 110-162 (162)
4 smart00317 SET SET (Su(var)3-9 98.5 2.5E-07 5.4E-12 75.6 5.4 49 272-320 68-116 (116)
5 KOG1085 Predicted methyltransf 96.5 0.0027 5.9E-08 60.0 3.7 52 278-330 334-385 (392)
6 KOG4442 Clathrin coat binding 95.4 0.02 4.4E-07 60.2 5.0 44 278-322 194-238 (729)
7 KOG1079 Transcriptional repres 95.3 0.018 3.9E-07 60.2 4.1 47 277-323 665-711 (739)
8 KOG1080 Histone H3 (Lys4) meth 94.6 0.039 8.5E-07 61.3 4.7 76 244-322 909-984 (1005)
9 KOG2589 Histone tail methylase 93.7 0.048 1E-06 53.4 2.8 48 272-323 192-239 (453)
10 COG2940 Proteins containing SE 89.7 0.17 3.7E-06 52.4 1.7 47 277-323 405-451 (480)
11 KOG1083 Putative transcription 87.6 0.61 1.3E-05 51.6 4.2 45 278-323 1251-1296(1306)
12 smart00317 SET SET (Su(var)3-9 84.3 1.3 2.9E-05 35.3 3.8 35 90-127 3-38 (116)
13 KOG1082 Histone H3 (Lys9) meth 80.3 1.5 3.2E-05 43.9 3.1 46 278-323 273-322 (364)
14 KOG1141 Predicted histone meth 50.7 9.4 0.0002 41.7 1.9 57 278-334 1190-1253(1262)
15 COG1188 Ribosome-associated he 46.6 14 0.00031 29.9 1.9 54 241-323 9-62 (100)
16 KOG2461 Transcription factor B 43.5 21 0.00046 36.2 3.1 32 302-334 124-155 (396)
17 KOG2084 Predicted histone tail 42.3 32 0.0007 34.8 4.3 62 270-335 198-265 (482)
18 TIGR02059 swm_rep_I cyanobacte 24.9 76 0.0017 25.7 2.8 22 301-322 76-97 (101)
19 KOG1085 Predicted methyltransf 24.3 1E+02 0.0022 29.9 3.9 38 86-127 255-293 (392)
20 KOG1081 Transcription factor N 21.0 38 0.00081 35.1 0.5 45 278-323 372-417 (463)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=4.8e-27 Score=225.11 Aligned_cols=238 Identities=15% Similarity=0.226 Sum_probs=177.9
Q ss_pred hHHHhcC-------cCCcEEeec-----CCceEEEEcccCCCCCCCcEEEEeCcccccccccccCcccCCCCCCCCchhH
Q 017015 79 GYVRSMR-------AYGVEFKEG-----PDGFGVFASKDIEPRRRARLVMQIPLELMLTIRQKLPWMFFPDIVPLGHPIF 146 (379)
Q Consensus 79 ~w~~w~~-------~~gvei~~~-----~~GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~~a~~~~~~~d~~~lg~~l~ 146 (379)
.|+.|.. .+.|++..- ..|+|++|+++|++ ||.++.+|+++++++.+..-.. ++-....
T Consensus 11 ~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkk---gE~Lf~~prdsvLsvtts~li~------~lps~~r 81 (466)
T KOG1338|consen 11 RFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKK---GESLFAYPRDSVLSVTTSALIT------PLPSDIR 81 (466)
T ss_pred HHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcC---CceEEEecCccEEeeehHHhcc------cchHHHH
Confidence 5666665 334555442 24999999999999 6999999999999988753110 1111112
Q ss_pred HhhhcCCCCCchhHHHHHHHHHHhc-CCCCcchhHhhcCCCCCCCCCcccCCHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Q 017015 147 DIINSTDPETDWDLRLACLLLYAFD-QDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWE 225 (379)
Q Consensus 147 ~~~~~~~~~~~~~~~Lal~Ll~E~~-g~~S~W~pYl~~LP~~~~~~~pl~Ws~~el~~L~gt~l~~~~~~~~~~v~~~~~ 225 (379)
.++++ ..+| ..|++.|++|.. +.+|+|+||++.+|+..++++|+||+++|+..|..+.+.++..+..+.+.+.|.
T Consensus 82 v~Lne---~gsw-~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i 157 (466)
T KOG1338|consen 82 VLLNE---VGSW-GMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFI 157 (466)
T ss_pred HHhhc---CCcH-HHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHH
Confidence 23332 4578 678888999984 555999999999999999999999999999988776677768888888888886
Q ss_pred HHh---cCCCCccccccCCCHHHHHHHHHHhhcceeeeeccccc--------ccCCceeeeecccccCCCCCCCceEEEE
Q 017015 226 KNW---HSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGA--------LVQDANMLIPYADMLNHSFQPNCFFHWR 294 (379)
Q Consensus 226 ~~~---~~~~~~~~~~~~~t~e~f~WA~~iV~SRaf~~~~~~~~--------~~~~~~~LvP~~Dm~NH~~~~~~~~~~~ 294 (379)
... .+..|..+ ..+++|+|..+++++.+.+|.+...... .+.....|+|..||+||+.. .++....
T Consensus 158 ~~i~pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~-k~nanl~ 234 (466)
T KOG1338|consen 158 FVIQPFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGL-KANANLR 234 (466)
T ss_pred HHHHHHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchh-hccccee
Confidence 553 23333222 2378999999999999999998865321 23457899999999999975 2344445
Q ss_pred eeCCeEEEEEEecccCCCCCeEEEcCCCCCChHHHHHhCCccC
Q 017015 295 FKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSS 337 (379)
Q Consensus 295 ~~~~~~~v~l~A~r~i~~GEEI~isYG~~~sN~~LLl~YGFv~ 337 (379)
.+++| +.|+|.|+|.+|+||+++||.+ +|. |++||.+.
T Consensus 235 y~~Nc--L~mva~r~iekgdev~n~dg~~-p~~--l~~l~ka~ 272 (466)
T KOG1338|consen 235 YEDNC--LEMVADRNIEKGDEVDNSDGLK-PMG--LLKLTKAL 272 (466)
T ss_pred ccCcc--eeeeecCCCCCccccccccccC-cch--hhhhhhhc
Confidence 56788 4679999999999999999998 787 77777765
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=238.12 Aligned_cols=187 Identities=25% Similarity=0.311 Sum_probs=150.7
Q ss_pred HHHHHHHHHHh-cCCCCcchhHhhcCCCCCCCCCcccCCHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHhc--CCCCccc
Q 017015 160 LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWH--SGVPLKI 236 (379)
Q Consensus 160 ~~Lal~Ll~E~-~g~~S~W~pYl~~LP~~~~~~~pl~Ws~~el~~L~gt~l~~~~~~~~~~v~~~~~~~~~--~~~~~~~ 236 (379)
..|+++|+.+. .+..|.|.+|+..||+.. .+|++|...++..|.++.....+..+++.++..++.... ...+..+
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQSHPSLF 189 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHhccccc
Confidence 67899999998 566699999999999997 589999999999999999999888877766664433221 1111111
Q ss_pred c---ccCCCHHHHHHHHHHhhcceeeeecccc---cccCCceeeeecccccCCCCCCCceEEEEeeCCeEEEEEEecccC
Q 017015 237 K---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHV 310 (379)
Q Consensus 237 ~---~~~~t~e~f~WA~~iV~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i 310 (379)
. ...++++.|+||+++|.||+|+...... .......+|+|++||+||+++. +...++..+++ +.+++.++|
T Consensus 190 ~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~--~~l~~~~~v 266 (472)
T KOG1337|consen 190 GSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA--VELVAERDV 266 (472)
T ss_pred cccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc--EEEEEeeee
Confidence 1 1227899999999999999999987631 1236789999999999999876 45556655655 667999999
Q ss_pred CCCCeEEEcCCCCCChHHHHHhCCccCCCCCCCEEEecCCch
Q 017015 311 RRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDAR 352 (379)
Q Consensus 311 ~~GEEI~isYG~~~sN~~LLl~YGFv~~~Np~D~v~l~~~~~ 352 (379)
++||||||+||++ +|++||++|||+.++||+|.|.+...+.
T Consensus 267 ~~geevfi~YG~~-~N~eLL~~YGFv~~~N~~d~v~l~~~l~ 307 (472)
T KOG1337|consen 267 SAGEEVFINYGPK-SNAELLLHYGFVEEDNPYDSVTLKLALP 307 (472)
T ss_pred cCCCeEEEecCCC-chHHHHHhcCCCCCCCCcceEEEeeccc
Confidence 9999999999998 7999999999999999999999987763
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.70 E-value=2e-17 Score=142.65 Aligned_cols=51 Identities=39% Similarity=0.757 Sum_probs=43.1
Q ss_pred CCceeeeecccccCCCCCCCceEEEEe--eCCeEEEEEEecccCCCCCeEEEcCC
Q 017015 269 QDANMLIPYADMLNHSFQPNCFFHWRF--KDRMLEVMVNAGQHVRRGEEMTVNYM 321 (379)
Q Consensus 269 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~--~~~~~~v~l~A~r~i~~GEEI~isYG 321 (379)
....+|+|++||+||+..+||.+.+.. .++. +.++|.|+|++||||||+||
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~--~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGC--LVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTE--EEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccce--EEEEECCccCCCCEEEEEEC
Confidence 467999999999999999999988875 3444 77899999999999999999
No 4
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.46 E-value=2.5e-07 Score=75.61 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=42.1
Q ss_pred eeeeecccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcC
Q 017015 272 NMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320 (379)
Q Consensus 272 ~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isY 320 (379)
..+.|+++++||+..||+.+.+...++...+.++|.|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3499999999999999998887766554347789999999999999999
No 5
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.45 E-value=0.0027 Score=60.02 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=42.3
Q ss_pred ccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcCCCCCChHHHH
Q 017015 278 ADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLM 330 (379)
Q Consensus 278 ~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~~~sN~~LL 330 (379)
.-|+||+-.+|+....-.-++...+.+.|.++|.+||||+..||.+ |-+.++
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR-Skesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR-SKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc-chhHHh
Confidence 3489999888987766655665668899999999999999999998 666554
No 6
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.02 Score=60.15 Aligned_cols=44 Identities=36% Similarity=0.621 Sum_probs=35.8
Q ss_pred ccccCCCCCCCceEE-EEeeCCeEEEEEEecccCCCCCeEEEcCCC
Q 017015 278 ADMLNHSFQPNCFFH-WRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 322 (379)
Q Consensus 278 ~Dm~NH~~~~~~~~~-~~~~~~~~~v~l~A~r~i~~GEEI~isYG~ 322 (379)
.=++||+.+|||.+. |.+.+ ...|-+-+.+.|++||||+..|+-
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~-~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPD-ELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCC-eeEEEEeEecccCCCceeeEeccc
Confidence 557999999999874 66544 455666899999999999999884
No 7
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=95.25 E-value=0.018 Score=60.24 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=36.8
Q ss_pred cccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcCCCC
Q 017015 277 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (379)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~~ 323 (379)
.+=++||+.+|||....-...+...|-+.|.|.|.+|||||..|+-.
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 35578999999997665544433346679999999999999999963
No 8
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=94.58 E-value=0.039 Score=61.30 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcceeeeecccccccCCceeeeecccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcCCC
Q 017015 244 ERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMH 322 (379)
Q Consensus 244 e~f~WA~~iV~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~ 322 (379)
|...-...+-.|..|.++... .-+..-.-=++=++||+.+|||....-..++...+++.|.|+|.+||||+.+|--
T Consensus 909 E~~Y~~~gi~~sYlfrid~~~---ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF 984 (1005)
T KOG1080|consen 909 EARYERMGIGDSYLFRIDDEV---VVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKF 984 (1005)
T ss_pred HHHHhccCcccceeeecccce---EEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccc
Confidence 333344556667777765321 0122222335668999999999877665555567889999999999999999985
No 9
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=93.67 E-value=0.048 Score=53.42 Aligned_cols=48 Identities=33% Similarity=0.475 Sum_probs=35.7
Q ss_pred eeeeecccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcCCCC
Q 017015 272 NMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (379)
Q Consensus 272 ~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~~ 323 (379)
.-|=| +-++||+..+||++.-... +. ..|++.|||++||||+--||..
T Consensus 192 LwLGP-aafINHDCrpnCkFvs~g~-~t--acvkvlRDIePGeEITcFYgs~ 239 (453)
T KOG2589|consen 192 LWLGP-AAFINHDCRPNCKFVSTGR-DT--ACVKVLRDIEPGEEITCFYGSG 239 (453)
T ss_pred heecc-HHhhcCCCCCCceeecCCC-ce--eeeehhhcCCCCceeEEeeccc
Confidence 34445 3589999999997643321 22 5579999999999999999973
No 10
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=89.68 E-value=0.17 Score=52.44 Aligned_cols=47 Identities=28% Similarity=0.421 Sum_probs=36.0
Q ss_pred cccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcCCCC
Q 017015 277 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (379)
Q Consensus 277 ~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~~ 323 (379)
+.=++||+..||+........+-..+..++.++|++||||+++||..
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 33389999999987654444332346678999999999999999985
No 11
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=87.61 E-value=0.61 Score=51.55 Aligned_cols=45 Identities=33% Similarity=0.589 Sum_probs=35.8
Q ss_pred ccccCCCCCCCceE-EEEeeCCeEEEEEEecccCCCCCeEEEcCCCC
Q 017015 278 ADMLNHSFQPNCFF-HWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (379)
Q Consensus 278 ~Dm~NH~~~~~~~~-~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~~ 323 (379)
+-+.||+..+||.. .|... |-+.+.|.|.|+|.+||||+..|..+
T Consensus 1251 ~RfinhscKPNc~~qkwSVN-G~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVN-GEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ccccccccCCCCcccccccc-ceeeeeeeecCCCCCCceEEEecccc
Confidence 33569999999975 45553 44668889999999999999999875
No 12
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=84.26 E-value=1.3 Score=35.26 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.1
Q ss_pred EEeec-CCceEEEEcccCCCCCCCcEEEEeCcccccccc
Q 017015 90 EFKEG-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIR 127 (379)
Q Consensus 90 ei~~~-~~GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~ 127 (379)
++... ..|+||+|+++|++ |++|+..+-.++....
T Consensus 3 ~~~~~~~~G~gl~a~~~i~~---g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 3 EVFKSPGKGWGVRATEDIPK---GEFIGEYVGEIITSEE 38 (116)
T ss_pred EEEecCCCcEEEEECCccCC---CCEEEEEEeEEECHHH
Confidence 44444 56999999999999 7999998887665543
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=80.29 E-value=1.5 Score=43.88 Aligned_cols=46 Identities=33% Similarity=0.527 Sum_probs=33.8
Q ss_pred ccccCCCCCCCceEEEEeeC----CeEEEEEEecccCCCCCeEEEcCCCC
Q 017015 278 ADMLNHSFQPNCFFHWRFKD----RMLEVMVNAGQHVRRGEEMTVNYMHG 323 (379)
Q Consensus 278 ~Dm~NH~~~~~~~~~~~~~~----~~~~v~l~A~r~i~~GEEI~isYG~~ 323 (379)
.=++||+..||..+..-..+ ....+.+.|.++|.+|+|++..||..
T Consensus 273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 45789999998755332222 12345678999999999999999975
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=50.69 E-value=9.4 Score=41.67 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=37.3
Q ss_pred ccccCCCCCCCceEE---EEeeCCeE-EEEEEecccCCCCCeEEEcCCCCC---ChHHHHHhCC
Q 017015 278 ADMLNHSFQPNCFFH---WRFKDRML-EVMVNAGQHVRRGEEMTVNYMHGQ---MNDMLMQRYG 334 (379)
Q Consensus 278 ~Dm~NH~~~~~~~~~---~~~~~~~~-~v~l~A~r~i~~GEEI~isYG~~~---sN~~LLl~YG 334 (379)
.=++||+..||..|. ++..+..+ =|.+-+.+.|++|.|++-.|+-.. ..-+|+...|
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCG 1253 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecC
Confidence 457999999997542 22222211 134568899999999999998531 2445666555
No 15
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=46.61 E-value=14 Score=29.91 Aligned_cols=54 Identities=11% Similarity=0.310 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhhcceeeeecccccccCCceeeeecccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCCeEEEcC
Q 017015 241 HDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 320 (379)
Q Consensus 241 ~t~e~f~WA~~iV~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GEEI~isY 320 (379)
.-.+.|+|+.-++-+|+.--... +- -.+.++ +. ..++.+.++.|++|.|.|
T Consensus 9 mRLDKwL~~aR~~KrRslAk~~~------------------~~-----GrV~vN--G~----~aKpS~~VK~GD~l~i~~ 59 (100)
T COG1188 9 MRLDKWLWAARFIKRRSLAKEMI------------------EG-----GRVKVN--GQ----RAKPSKEVKVGDILTIRF 59 (100)
T ss_pred eehHHHHHHHHHhhhHHHHHHHH------------------HC-----CeEEEC--CE----EcccccccCCCCEEEEEe
Confidence 34789999999999999875432 11 134443 21 138889999999999999
Q ss_pred CCC
Q 017015 321 MHG 323 (379)
Q Consensus 321 G~~ 323 (379)
|..
T Consensus 60 ~~~ 62 (100)
T COG1188 60 GNK 62 (100)
T ss_pred CCc
Confidence 975
No 16
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=43.47 E-value=21 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.8
Q ss_pred EEEEecccCCCCCeEEEcCCCCCChHHHHHhCC
Q 017015 302 VMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYG 334 (379)
Q Consensus 302 v~l~A~r~i~~GEEI~isYG~~~sN~~LLl~YG 334 (379)
+..++.|+|++||||.+-||... +.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~-~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEY-AEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccch-HhHhcccCC
Confidence 55689999999999999999864 777777666
No 17
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=42.32 E-value=32 Score=34.75 Aligned_cols=62 Identities=26% Similarity=0.281 Sum_probs=43.7
Q ss_pred CceeeeecccccCCCCCCCceEEEEeeCCeEEEEEEecccCCCCC-eEEEcCCCCC-----ChHHHHHhCCc
Q 017015 270 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGE-EMTVNYMHGQ-----MNDMLMQRYGF 335 (379)
Q Consensus 270 ~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~v~l~A~r~i~~GE-EI~isYG~~~-----sN~~LLl~YGF 335 (379)
...+|.|..=++||+..||+.+.++. .. +.+.+...+.+++ +++++|-... -...|...|.|
T Consensus 198 ~~~~l~~~~~~~~hsC~pn~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 198 LGRGLFPGSSLFNHSCFPNISVIFDG--RG--LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred ceeeecccchhcccCCCCCeEEEECC--ce--eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 46788898889999999998755543 33 3346667777766 9999999731 13345666666
No 18
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=24.89 E-value=76 Score=25.73 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEEecccCCCCCeEEEcCCC
Q 017015 301 EVMVNAGQHVRRGEEMTVNYMH 322 (379)
Q Consensus 301 ~v~l~A~r~i~~GEEI~isYG~ 322 (379)
.|.|.-.+.|..||+|.++|-.
T Consensus 76 tVTLTL~~~V~~Gq~VTVsYt~ 97 (101)
T TIGR02059 76 TITLTLAQVVEDGDEVTLSYTK 97 (101)
T ss_pred EEEEEecccccCCCEEEEEeeC
Confidence 4777888999999999999975
No 19
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=24.31 E-value=1e+02 Score=29.92 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=26.7
Q ss_pred cCCcEEeec-CCceEEEEcccCCCCCCCcEEEEeCcccccccc
Q 017015 86 AYGVEFKEG-PDGFGVFASKDIEPRRRARLVMQIPLELMLTIR 127 (379)
Q Consensus 86 ~~gvei~~~-~~GrGl~At~dI~~~~~Ge~ll~IP~~~~ls~~ 127 (379)
..|+.+... ..||||+|+..++. ||.|++-==. +|.+.
T Consensus 255 ~egl~~~~~dgKGRGv~a~~~F~r---gdFVVEY~Gd-liei~ 293 (392)
T KOG1085|consen 255 NEGLLEVYKDGKGRGVRAKVNFER---GDFVVEYRGD-LIEIS 293 (392)
T ss_pred ccceeEEeeccccceeEeeccccc---CceEEEEecc-eeeec
Confidence 456666665 56999999999997 7988875433 34433
No 20
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=21.04 E-value=38 Score=35.14 Aligned_cols=45 Identities=36% Similarity=0.522 Sum_probs=29.7
Q ss_pred ccccCCCCCCCce-EEEEeeCCeEEEEEEecccCCCCCeEEEcCCCC
Q 017015 278 ADMLNHSFQPNCF-FHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHG 323 (379)
Q Consensus 278 ~Dm~NH~~~~~~~-~~~~~~~~~~~v~l~A~r~i~~GEEI~isYG~~ 323 (379)
-+++||+..+++. ..|....+. .+.+.|.+.|++|+|++.+|-..
T Consensus 372 sr~~nh~~~~~v~~~k~~~~~~t-~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 372 SRFLNHSCQPNVETEKWQVIGDT-RVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred hhhhcccCCCceeechhheeccc-ccccccccccccchhhhheeecc
Confidence 3568999655542 222222221 14568999999999999999864
Done!