Query 017017
Match_columns 379
No_of_seqs 226 out of 467
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 3.6E-27 7.8E-32 229.3 29.9 295 52-362 19-327 (345)
2 PF06027 DUF914: Eukaryotic pr 99.9 4.4E-21 9.6E-26 189.1 29.2 284 64-364 29-312 (334)
3 PF08449 UAA: UAA transporter 99.9 2.2E-20 4.7E-25 182.3 29.7 279 66-361 19-301 (303)
4 PF04142 Nuc_sug_transp: Nucle 99.9 4.9E-21 1.1E-25 181.9 22.7 219 116-347 15-243 (244)
5 TIGR00817 tpt Tpt phosphate/ph 99.9 1.5E-19 3.3E-24 175.7 26.7 266 73-358 26-294 (302)
6 PLN00411 nodulin MtN21 family 99.8 1.3E-17 2.8E-22 166.7 33.8 236 116-366 76-337 (358)
7 PTZ00343 triose or hexose phos 99.8 1.9E-17 4E-22 165.1 32.0 286 55-357 56-348 (350)
8 KOG1583 UDP-N-acetylglucosamin 99.8 5.1E-20 1.1E-24 173.4 11.2 290 51-357 5-314 (330)
9 TIGR00950 2A78 Carboxylate/Ami 99.8 9.9E-16 2.1E-20 144.8 28.7 207 124-352 53-259 (260)
10 PRK11272 putative DMT superfam 99.7 1.6E-14 3.4E-19 140.2 31.6 261 62-357 22-285 (292)
11 PRK11453 O-acetylserine/cystei 99.7 3.9E-15 8.5E-20 144.9 26.9 215 130-359 71-289 (299)
12 KOG2765 Predicted membrane pro 99.7 1.2E-15 2.6E-20 149.3 21.1 310 39-364 6-397 (416)
13 PRK15430 putative chlorampheni 99.7 2.5E-14 5.4E-19 139.1 28.0 214 122-362 77-290 (296)
14 PRK10532 threonine and homoser 99.6 8.5E-13 1.8E-17 128.2 30.1 209 122-359 75-283 (293)
15 PRK11689 aromatic amino acid e 99.6 1.8E-13 3.9E-18 133.0 23.3 213 125-357 68-287 (295)
16 TIGR03340 phn_DUF6 phosphonate 99.6 5.3E-13 1.2E-17 128.7 25.4 216 120-354 65-280 (281)
17 KOG1443 Predicted integral mem 99.5 8.4E-13 1.8E-17 126.5 20.3 228 113-357 83-315 (349)
18 COG0697 RhaT Permeases of the 99.5 9.3E-11 2E-15 111.1 31.4 214 122-358 74-288 (292)
19 TIGR00688 rarD rarD protein. T 99.4 1.3E-10 2.8E-15 110.3 24.5 97 118-227 70-166 (256)
20 COG2962 RarD Predicted permeas 99.4 7.6E-11 1.6E-15 112.9 22.3 219 116-365 70-291 (293)
21 KOG3912 Predicted integral mem 99.4 4.5E-11 9.7E-16 113.6 17.6 223 128-356 97-333 (372)
22 KOG1441 Glucose-6-phosphate/ph 99.3 4.1E-12 8.9E-17 124.5 10.6 294 46-361 15-311 (316)
23 TIGR00776 RhaT RhaT L-rhamnose 99.3 1.1E-09 2.3E-14 106.7 26.4 224 115-357 56-288 (290)
24 KOG1582 UDP-galactose transpor 99.3 3.7E-10 8.1E-15 106.9 20.1 292 43-359 38-334 (367)
25 TIGR00803 nst UDP-galactose tr 99.3 6.4E-11 1.4E-15 110.4 15.0 212 128-355 10-222 (222)
26 PF03151 TPT: Triose-phosphate 99.3 7.3E-11 1.6E-15 102.9 14.3 149 208-357 1-153 (153)
27 KOG1580 UDP-galactose transpor 99.2 1.7E-10 3.8E-15 107.2 13.4 216 125-355 92-311 (337)
28 KOG1442 GDP-fucose transporter 99.1 1.7E-11 3.7E-16 116.0 2.9 233 114-367 102-337 (347)
29 KOG4510 Permease of the drug/m 99.0 2.6E-10 5.7E-15 107.8 5.7 206 129-356 109-324 (346)
30 KOG1444 Nucleotide-sugar trans 99.0 1.9E-07 4.1E-12 90.8 22.6 284 56-362 20-305 (314)
31 KOG1581 UDP-galactose transpor 98.9 1.4E-07 3E-12 91.0 17.8 217 125-359 90-315 (327)
32 KOG4314 Predicted carbohydrate 98.8 1.3E-07 2.8E-12 86.3 13.3 214 123-358 58-277 (290)
33 PF13536 EmrE: Multidrug resis 98.8 5.1E-08 1.1E-12 81.7 9.7 71 122-193 38-109 (113)
34 COG5006 rhtA Threonine/homoser 98.6 2.4E-05 5.2E-10 74.1 24.0 203 123-354 76-279 (292)
35 PF00892 EamA: EamA-like trans 98.6 5.1E-07 1.1E-11 74.8 10.6 67 122-188 57-124 (126)
36 KOG2766 Predicted membrane pro 98.4 8.9E-08 1.9E-12 90.3 1.1 257 73-358 43-300 (336)
37 PF06800 Sugar_transport: Suga 98.3 0.00011 2.3E-09 70.9 19.3 113 115-228 42-159 (269)
38 PRK15051 4-amino-4-deoxy-L-ara 98.2 1.4E-05 3.1E-10 67.1 10.3 65 126-190 45-109 (111)
39 TIGR00950 2A78 Carboxylate/Ami 98.1 0.0001 2.2E-09 69.5 16.1 58 128-185 202-259 (260)
40 PLN00411 nodulin MtN21 family 98.1 0.00011 2.3E-09 74.0 16.6 69 125-193 263-331 (358)
41 COG5070 VRG4 Nucleotide-sugar 98.1 0.00019 4.1E-09 67.0 15.6 261 74-359 33-298 (309)
42 PF05653 Mg_trans_NIPA: Magnes 98.0 0.00017 3.6E-09 70.9 15.3 67 127-193 59-125 (300)
43 PF03151 TPT: Triose-phosphate 98.0 0.00018 3.9E-09 62.4 13.5 124 64-187 16-150 (153)
44 COG2510 Predicted membrane pro 98.0 4.4E-05 9.6E-10 65.3 8.9 120 62-189 17-138 (140)
45 PRK11689 aromatic amino acid e 97.9 0.0004 8.7E-09 67.5 15.0 69 122-190 219-287 (295)
46 PRK10532 threonine and homoser 97.8 0.001 2.2E-08 64.7 16.9 68 124-191 214-282 (293)
47 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00033 7.2E-09 68.2 13.4 122 58-190 162-288 (290)
48 PRK15430 putative chlorampheni 97.7 0.0011 2.3E-08 64.6 15.2 72 120-191 215-286 (296)
49 TIGR03340 phn_DUF6 phosphonate 97.7 0.00012 2.6E-09 70.6 7.7 71 118-188 211-281 (281)
50 PRK11272 putative DMT superfam 97.6 0.0023 5E-08 62.1 15.9 64 128-191 223-286 (292)
51 PRK13499 rhamnose-proton sympo 97.6 0.036 7.8E-07 55.5 23.5 109 115-223 70-190 (345)
52 COG2510 Predicted membrane pro 97.5 0.0018 4E-08 55.5 11.4 129 209-354 5-136 (140)
53 PRK10452 multidrug efflux syst 97.5 0.0011 2.3E-08 56.6 10.0 68 125-192 37-105 (120)
54 TIGR00817 tpt Tpt phosphate/ph 97.4 0.00081 1.7E-08 65.4 10.0 62 129-190 232-293 (302)
55 PRK11453 O-acetylserine/cystei 97.4 0.0078 1.7E-07 58.6 16.1 66 126-191 223-288 (299)
56 PF00892 EamA: EamA-like trans 97.4 0.002 4.4E-08 53.0 10.2 66 288-357 61-126 (126)
57 COG2076 EmrE Membrane transpor 97.3 0.0019 4.1E-08 53.7 9.5 65 126-190 38-103 (106)
58 PRK10650 multidrug efflux syst 97.3 0.0023 5E-08 53.7 9.2 63 126-188 43-106 (109)
59 TIGR00688 rarD rarD protein. T 97.2 0.013 2.9E-07 55.4 15.6 137 208-356 3-141 (256)
60 PRK02971 4-amino-4-deoxy-L-ara 97.2 0.0023 5E-08 55.3 8.9 66 126-191 56-123 (129)
61 PRK09541 emrE multidrug efflux 97.2 0.0039 8.4E-08 52.4 10.0 66 126-191 38-104 (110)
62 PRK11431 multidrug efflux syst 97.2 0.0035 7.7E-08 52.2 9.5 64 126-189 37-101 (105)
63 PF13536 EmrE: Multidrug resis 97.0 0.015 3.3E-07 48.4 11.8 48 314-361 63-110 (113)
64 COG0697 RhaT Permeases of the 97.0 0.035 7.7E-07 52.2 15.5 72 120-191 216-288 (292)
65 PTZ00343 triose or hexose phos 96.8 0.0077 1.7E-07 60.3 9.6 66 124-189 282-347 (350)
66 KOG2922 Uncharacterized conser 96.5 0.0083 1.8E-07 58.9 7.8 68 127-194 73-140 (335)
67 PF00893 Multi_Drug_Res: Small 96.2 0.018 4E-07 46.6 6.9 54 127-180 38-92 (93)
68 PRK13499 rhamnose-proton sympo 96.2 0.11 2.3E-06 52.2 13.6 117 74-191 206-342 (345)
69 PF08449 UAA: UAA transporter 96.1 0.091 2E-06 51.3 12.8 59 131-190 239-297 (303)
70 COG5006 rhtA Threonine/homoser 95.9 0.04 8.6E-07 52.7 8.4 75 114-188 205-280 (292)
71 PF04657 DUF606: Protein of un 95.8 0.39 8.5E-06 41.8 13.9 107 74-187 27-138 (138)
72 TIGR00803 nst UDP-galactose tr 95.6 0.028 6.1E-07 52.2 6.5 62 125-186 159-220 (222)
73 PF06800 Sugar_transport: Suga 95.5 0.23 5E-06 48.1 12.2 93 75-176 161-253 (269)
74 COG2962 RarD Predicted permeas 95.5 0.39 8.5E-06 46.8 13.7 135 206-357 6-144 (293)
75 PRK10452 multidrug efflux syst 95.1 0.55 1.2E-05 40.1 12.0 35 321-355 67-101 (120)
76 PF06027 DUF914: Eukaryotic pr 94.7 0.45 9.7E-06 47.6 12.2 126 62-192 182-307 (334)
77 PF10639 UPF0546: Uncharacteri 94.6 0.083 1.8E-06 44.6 5.6 62 126-187 49-111 (113)
78 PRK15051 4-amino-4-deoxy-L-ara 93.9 0.57 1.2E-05 39.2 9.3 36 320-355 72-107 (111)
79 COG2076 EmrE Membrane transpor 93.1 1.2 2.6E-05 37.2 9.8 36 320-355 66-101 (106)
80 PF05653 Mg_trans_NIPA: Magnes 93.0 0.75 1.6E-05 45.3 10.1 38 320-357 85-122 (300)
81 COG4975 GlcU Putative glucose 92.9 0.0074 1.6E-07 57.3 -4.0 115 113-228 54-173 (288)
82 PF04142 Nuc_sug_transp: Nucle 92.0 3.4 7.4E-05 39.4 12.9 119 55-179 122-242 (244)
83 PRK02971 4-amino-4-deoxy-L-ara 92.0 1.3 2.8E-05 38.2 9.0 34 323-356 86-121 (129)
84 PRK09541 emrE multidrug efflux 91.5 1.9 4E-05 36.2 9.3 35 321-355 67-101 (110)
85 PF06379 RhaT: L-rhamnose-prot 91.4 1.9 4.1E-05 43.1 10.6 168 50-222 6-188 (344)
86 PRK10650 multidrug efflux syst 91.4 4.7 0.0001 33.8 11.5 35 320-354 71-105 (109)
87 KOG1580 UDP-galactose transpor 90.4 0.66 1.4E-05 44.2 6.0 67 124-190 247-313 (337)
88 PRK11431 multidrug efflux syst 89.8 2.8 6E-05 34.9 8.7 36 320-355 65-100 (105)
89 KOG2765 Predicted membrane pro 88.5 2.4 5.3E-05 42.8 8.7 67 126-192 326-392 (416)
90 KOG1441 Glucose-6-phosphate/ph 86.1 0.35 7.6E-06 48.0 1.3 61 127-188 245-305 (316)
91 KOG1583 UDP-N-acetylglucosamin 86.0 5.8 0.00013 38.8 9.4 56 133-189 258-313 (330)
92 KOG4510 Permease of the drug/m 81.3 0.39 8.5E-06 46.5 -0.6 54 322-375 134-187 (346)
93 PF06379 RhaT: L-rhamnose-prot 76.2 85 0.0018 31.6 13.9 80 111-191 252-341 (344)
94 PF00893 Multi_Drug_Res: Small 75.6 40 0.00086 27.0 9.8 29 320-348 65-93 (93)
95 COG0341 SecF Preprotein transl 75.4 58 0.0013 32.3 12.6 146 167-355 129-278 (305)
96 KOG2234 Predicted UDP-galactos 74.5 1E+02 0.0022 31.1 14.4 130 56-190 187-322 (345)
97 COG4975 GlcU Putative glucose 74.4 1.5 3.2E-05 42.1 1.1 74 116-189 207-284 (288)
98 PF07857 DUF1632: CEO family ( 73.9 6.8 0.00015 37.7 5.6 22 339-360 116-137 (254)
99 PF04657 DUF606: Protein of un 70.4 71 0.0015 27.6 14.6 19 335-353 119-137 (138)
100 PF04246 RseC_MucC: Positive r 68.6 10 0.00022 32.6 5.0 49 310-358 65-113 (135)
101 KOG1444 Nucleotide-sugar trans 62.0 21 0.00046 35.3 6.3 71 118-191 231-301 (314)
102 KOG1581 UDP-galactose transpor 57.2 2E+02 0.0044 28.6 12.0 73 286-362 88-160 (327)
103 COG5070 VRG4 Nucleotide-sugar 55.6 44 0.00096 31.9 6.9 70 122-191 228-297 (309)
104 COG3238 Uncharacterized protei 54.4 1.6E+02 0.0034 26.2 13.4 106 77-188 33-144 (150)
105 PF02447 GntP_permease: GntP f 48.7 3E+02 0.0064 28.7 12.5 45 319-363 152-199 (441)
106 KOG4831 Unnamed protein [Funct 47.7 27 0.00058 29.3 3.7 60 128-187 62-122 (125)
107 KOG1582 UDP-galactose transpor 47.0 3E+02 0.0065 27.2 11.3 132 57-191 200-333 (367)
108 KOG4314 Predicted carbohydrate 46.4 11 0.00025 35.1 1.5 40 318-357 86-125 (290)
109 PF11139 DUF2910: Protein of u 45.0 2.5E+02 0.0054 25.8 12.1 66 76-141 64-138 (214)
110 PF01098 FTSW_RODA_SPOVE: Cell 44.1 62 0.0014 32.3 6.6 27 71-98 86-116 (358)
111 PF04342 DUF486: Protein of un 43.3 1.5E+02 0.0033 24.8 7.5 52 300-351 49-102 (108)
112 KOG1623 Multitransmembrane pro 43.1 41 0.00088 32.3 4.7 106 151-264 76-182 (243)
113 PRK10734 putative calcium/sodi 39.3 1.6E+02 0.0034 29.3 8.5 31 331-361 118-148 (325)
114 PRK10862 SoxR reducing system 38.8 56 0.0012 28.9 4.7 16 310-325 72-87 (154)
115 KOG4026 Uncharacterized conser 37.2 3.4E+02 0.0073 25.4 9.6 23 242-264 109-131 (207)
116 PF10639 UPF0546: Uncharacteri 37.1 91 0.002 26.3 5.5 36 318-353 75-110 (113)
117 COG3086 RseC Positive regulato 36.8 69 0.0015 28.3 4.8 12 312-323 74-85 (150)
118 PF04342 DUF486: Protein of un 36.5 43 0.00092 28.0 3.3 28 159-186 77-104 (108)
119 PF02487 CLN3: CLN3 protein; 36.3 1.4E+02 0.003 30.8 7.7 33 159-191 77-109 (402)
120 KOG1442 GDP-fucose transporter 35.8 15 0.00032 36.1 0.5 112 74-188 211-325 (347)
121 PHA03049 IMV membrane protein; 35.2 47 0.001 25.4 3.0 15 341-355 6-20 (68)
122 PRK02237 hypothetical protein; 34.0 78 0.0017 26.6 4.5 38 155-192 70-107 (109)
123 PRK02935 hypothetical protein; 33.6 54 0.0012 27.4 3.4 56 167-222 6-61 (110)
124 KOG0569 Permease of the major 32.5 5.6E+02 0.012 27.1 11.7 22 56-77 69-90 (485)
125 COG0772 FtsW Bacterial cell di 32.5 1.9E+02 0.0042 29.5 8.0 27 73-99 103-132 (381)
126 PF10710 DUF2512: Protein of u 31.9 3.4E+02 0.0074 23.6 8.7 55 309-363 56-111 (136)
127 PF11023 DUF2614: Protein of u 31.2 94 0.002 26.3 4.5 59 167-225 5-63 (114)
128 PF15108 TMEM37: Voltage-depen 31.1 1.8E+02 0.0039 26.1 6.5 77 176-258 93-169 (184)
129 PF05915 DUF872: Eukaryotic pr 30.4 1.8E+02 0.0039 24.5 6.2 48 46-97 41-92 (115)
130 PF05961 Chordopox_A13L: Chord 28.8 68 0.0015 24.6 3.0 16 341-356 6-21 (68)
131 KOG2922 Uncharacterized conser 28.4 11 0.00024 37.5 -1.6 38 320-357 99-136 (335)
132 PRK13024 bifunctional preprote 28.3 8.8E+02 0.019 27.1 13.8 16 250-265 631-646 (755)
133 COG3169 Uncharacterized protei 27.7 2.7E+02 0.0058 23.2 6.5 33 320-352 78-110 (116)
134 PF02694 UPF0060: Uncharacteri 26.3 1.1E+02 0.0023 25.7 4.0 37 156-192 69-105 (107)
135 PF13038 DUF3899: Domain of un 25.8 73 0.0016 25.3 3.0 19 341-359 6-24 (92)
136 COG4736 CcoQ Cbb3-type cytochr 25.8 84 0.0018 23.6 3.0 21 342-362 15-35 (60)
137 COG3169 Uncharacterized protei 25.6 1.5E+02 0.0034 24.5 4.7 30 159-188 84-113 (116)
138 PF06570 DUF1129: Protein of u 24.9 5.4E+02 0.012 23.5 11.8 15 157-171 188-202 (206)
139 PF01914 MarC: MarC family int 24.6 1E+02 0.0022 28.5 4.1 31 332-362 64-94 (203)
140 PF05297 Herpes_LMP1: Herpesvi 23.8 26 0.00057 34.4 0.0 91 128-226 34-126 (381)
141 KOG1443 Predicted integral mem 22.7 3.7E+02 0.0081 26.9 7.6 50 139-188 264-313 (349)
142 PRK13108 prolipoprotein diacyl 22.5 97 0.0021 32.5 3.9 33 337-369 254-286 (460)
143 KOG3762 Predicted transporter 21.1 5.3E+02 0.012 28.0 8.9 14 342-355 533-546 (618)
144 PRK01844 hypothetical protein; 21.0 1.8E+02 0.0038 22.7 4.0 28 46-73 4-31 (72)
145 COG4711 Predicted membrane pro 20.7 7.1E+02 0.015 23.4 8.9 72 163-234 114-188 (217)
146 KOG4783 Uncharacterized conser 20.6 3.7E+02 0.008 22.2 5.9 29 341-369 70-99 (102)
147 PF01102 Glycophorin_A: Glycop 20.0 80 0.0017 27.1 2.2 8 352-359 83-90 (122)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.6e-27 Score=229.30 Aligned_cols=295 Identities=21% Similarity=0.235 Sum_probs=231.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhcccccc----CC------CCCCCCChhHHHHHHH
Q 017017 52 NIFFLIAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQ----EV------SSSSRYPSFVTLALVY 121 (379)
Q Consensus 52 ~~~~l~~g~~~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~----~~------~~~~~~p~~~~~~~~~ 121 (379)
+.+.+.+..++-+++.||....+|.++.-+|.|..+|.-++.++.++.+++. ++ ++....| +-.+..+
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~lk~~ 96 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAP--RETLKVS 96 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhCh--HHHHHHH
Confidence 3347888889999999999999999999999999999999999998766542 10 1111122 1334456
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCC--Cc
Q 017017 122 LVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGP--SK 199 (379)
Q Consensus 122 ~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~--~~ 199 (379)
++..++..+||+.| .+++|+|++||++.+|+++.+|++|+.++++||++++||.+++++++|+++++.+..+..+ +.
T Consensus 97 vPa~iYalqNnl~y-val~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~ 175 (345)
T KOG2234|consen 97 VPALIYALQNNLQY-VALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSE 175 (345)
T ss_pred HHHHHHHHhhhHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCC
Confidence 77777767776555 9999999999999999999999999999999999999999999999999999854433222 13
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHHHhhccccchhcccccccc
Q 017017 200 VSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQS-FGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFG 278 (379)
Q Consensus 200 ~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~-~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~ 278 (379)
....+.+.|+..++.+|.++|+ .+++|||++|+.. ..|+.++|++. ++.++.+++++.. |++.+. ..+|+
T Consensus 176 ~~~~n~~~G~~avl~~c~~Sgf----AgvYfEkiLK~s~~s~wi~NiqL~~--~g~~f~~l~~~~~-d~~~i~--~~gff 246 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGF----AGVYFEKILKGSNVSLWIRNIQLYF--FGILFNLLTILLQ-DGEAIN--EYGFF 246 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHH----HHHHHHHHHhcCCchHHHHHHHHHH--HHHHHHHHHHhhc-cccccc--cCCcc
Confidence 4467789999999999999999 8888999988654 45888888655 7778888887766 566665 35666
Q ss_pred ccchHHHHHHHHHHHHHHHHH-hhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 279 KGKVSYVMVIVWTAVSWQVCS-VGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 279 ~g~~~y~l~lv~~av~~q~~~-~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
+|. -..+|..+..++.+ +-+.-+.+++|++++++..++.+.++.+.++.+||-++|..-..|..+++.....|.+
T Consensus 247 ~G~----s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 247 YGY----SSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred ccc----cHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhc
Confidence 664 34555655555533 4455577899999999999999999999999999999999999999999866666665
Q ss_pred ccccc
Q 017017 358 QNYLD 362 (379)
Q Consensus 358 ~~~~~ 362 (379)
.+++|
T Consensus 323 ~P~~~ 327 (345)
T KOG2234|consen 323 YPARD 327 (345)
T ss_pred CCccc
Confidence 55555
No 2
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.90 E-value=4.4e-21 Score=189.14 Aligned_cols=284 Identities=16% Similarity=0.200 Sum_probs=188.1
Q ss_pred HHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 017017 64 VILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLS 143 (379)
Q Consensus 64 ~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp 143 (379)
.....+--++|=+-+..+|+.--.--.+...|..+.++ ++++-. .. .++-+..|+.++++-...|++...|++|++
T Consensus 29 ~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~--~~-~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs 104 (334)
T PF06027_consen 29 GTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWL--KV-LKRPWWKYFLLALLDVEANYLVVLAYQYTS 104 (334)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccch--hh-cchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444444445566778887665443333333333221 111100 01 112233466778999999999999999999
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 017017 144 ASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLL 223 (379)
Q Consensus 144 ~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l 223 (379)
+++.+++.++..+|+++++++++|+|+++.|+.|+++.++|++++...|...+.++.+..+...|++++++||++||++-
T Consensus 105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~n 184 (334)
T PF06027_consen 105 VTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSN 184 (334)
T ss_pred HhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877654322222334567999999999999999966
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHHHHHHHHHHHHHHHHHhhhh
Q 017017 224 SLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVV 303 (379)
Q Consensus 224 ~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~~~~gv~ 303 (379)
++. |+..|+.+ ..|+..+.++++.+++.+-..+- |++++.. -.| .++. ...+++-+++..+....+.
T Consensus 185 V~~----E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~--~~w-~~~~--~~~~v~~~~~lf~~y~l~p 251 (334)
T PF06027_consen 185 VLE----EKLVKKAP---RVEFLGMLGLFGFIISGIQLAIL-ERSGIES--IHW-TSQV--IGLLVGYALCLFLFYSLVP 251 (334)
T ss_pred HHH----HHhcccCC---HHHHHHHHHHHHHHHHHHHHHhe-ehhhhhc--cCC-Chhh--HHHHHHHHHHHHHHHHHHH
Confidence 665 44444333 35666777888887777543322 3334421 122 1221 1122223333333322222
Q ss_pred hhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccccc
Q 017017 304 GLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDDY 364 (379)
Q Consensus 304 glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~~~ 364 (379)
-+...+++...|+-....-|.+.++.+++||+++++..++|.++++.|+..|...+.++++
T Consensus 252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 2344556666655555556889999999999999999999999999999999887655543
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.89 E-value=2.2e-20 Score=182.26 Aligned_cols=279 Identities=18% Similarity=0.238 Sum_probs=206.4
Q ss_pred HHHHHHhcCCC-chhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 017017 66 LGRYYYDQGGN-SKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSA 144 (379)
Q Consensus 66 l~r~y~~~~g~-~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~ 144 (379)
.++....+.++ ..|..|++|.+...+...+......+ +..++.| .++.+.. +++....+.+-..+++|+|.
T Consensus 19 qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~----~~~~~~~~~~~~~al~~i~~ 90 (303)
T PF08449_consen 19 QEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF---PKSRKIP-LKKYAIL----SFLFFLASVLSNAALKYISY 90 (303)
T ss_pred HHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---cCCCcCh-HHHHHHH----HHHHHHHHHHHHHHHHhCCh
Confidence 55555555555 79999999988888765554433221 1112234 3344434 66677777777789999999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCcc-chhhhHHHHHHHHHHHHHHHHHH
Q 017017 145 STYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKV-SKWKYILGFISTVGASAIYSLLL 223 (379)
Q Consensus 145 st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~-~~~~~~~G~ll~L~Aa~~~al~l 223 (379)
+++.++++++++++++++++++|||++++++.++++.++|+++...++.++++... +......|+++.+.+.++.|+..
T Consensus 91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776654432222 22223449999999999999999
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhh--ccccchhccccccccccchHHHHHHHHHHHHHHHHHhh
Q 017017 224 SLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFA--SGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVG 301 (379)
Q Consensus 224 ~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~--~g~~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~~~~g 301 (379)
...|+.++++. .. ..|+.++..+++.+...+.... .+|+.+-. .+....+..+..+....++-.++..+
T Consensus 171 ~~qe~~~~~~~-~~----~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~----~f~~~~p~~~~~l~~~s~~~~~g~~~ 241 (303)
T PF08449_consen 171 VYQEKLFKKYG-KS----PWELMFYTNLFSLPFLLILLFLLPTGEFRSAI----RFISAHPSVLLYLLLFSLTGALGQFF 241 (303)
T ss_pred HHHHHHHHHhC-Cc----HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99888888762 22 3788899999988888877666 55543221 11111112222334444444444455
Q ss_pred hhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccc
Q 017017 302 VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 302 v~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~ 361 (379)
+..++...+++..+++.+.+++++.++++++||+++++.+++|.++++.|...|.+.+++
T Consensus 242 i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 242 IFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 666777889999999999999999999999999999999999999999999999986543
No 4
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.88 E-value=4.9e-21 Score=181.86 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCC
Q 017017 116 TLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSE 195 (379)
Q Consensus 116 ~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~ 195 (379)
|..+.+.+.+++++.+|.+...+++++|++++++++|+++++|++|+++++|||++++||.|++++++|+++++.++..+
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 44444555666666666555599999999999999999999999999999999999999999999999999987665332
Q ss_pred C--C--Cc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 017017 196 G--P--SK----VSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQS-FGVVLDMQIYTSFVATCICIVGLFASGE 266 (379)
Q Consensus 196 ~--~--~~----~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~-~~~vle~q~~~~lva~~~~~vgl~~~g~ 266 (379)
+ + .+ .+..+...|+++++.+++++|+ ..++.||++|+.. ..+..++|++. .+.++.++..... |
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~----agVy~E~~lK~~~~s~~~~N~qL~~--~gi~~~~~~~~~~-~ 167 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGF----AGVYFEKLLKRSNVSLWIQNMQLYL--FGILFNLLALLLS-D 167 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHH----HHHHHHHHhcccchhHHHHHHHHHH--HHHHHHHHHHhcc-c
Confidence 1 1 11 1234678999999999999999 6666777777653 34677777654 5556666655444 4
Q ss_pred cchhccccccccccchHHHHHHHHHHHHHHH-HHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHH
Q 017017 267 WRTLSGEMQGFGKGKVSYVMVIVWTAVSWQV-CSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAM 345 (379)
Q Consensus 267 ~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~-~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~ 345 (379)
+.++.+ +++++|. ...+|..+..|. .++.+..+.+++|++.+++...+.+.++.++++++||.+++..-.+|.
T Consensus 168 ~~~~~~--~g~f~G~----~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 168 GSAISE--SGFFHGY----SWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred cccccc--CCchhhc----chHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 444433 3455553 334455555554 557777788999999999999999999999999999999999888776
Q ss_pred HH
Q 017017 346 LM 347 (379)
Q Consensus 346 ~l 347 (379)
.+
T Consensus 242 ~~ 243 (244)
T PF04142_consen 242 AL 243 (244)
T ss_pred ec
Confidence 54
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.86 E-value=1.5e-19 Score=175.70 Aligned_cols=266 Identities=17% Similarity=0.094 Sum_probs=169.0
Q ss_pred cCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHh
Q 017017 73 QGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICA 152 (379)
Q Consensus 73 ~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~s 152 (379)
++-+-++..++.|.+.--+...+.+....++ ++ +..+|.+...++.|+..+.++.+..+|++|+++++++++.+
T Consensus 26 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~ 99 (302)
T TIGR00817 26 NVFPYPYFKTLISLAVGSLYCLLSWSSGLPK--RL----KISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKA 99 (302)
T ss_pred hhCChhHHHHHHHHHHHHHHHHHHHHhCCCC--CC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 4456688888888664333222221111111 11 12234444556678888888889999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 153 SQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQK 232 (379)
Q Consensus 153 sql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk 232 (379)
++|+|+++++++++|||++++++.++++.++|+++... ++. .....|++++++|++++++|..+.++..+
T Consensus 100 ~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~-~~~--------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~- 169 (302)
T TIGR00817 100 MEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD-TEL--------SFNWAGFLSAMISNITFVSRNIFSKKAMT- 169 (302)
T ss_pred cchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC-Ccc--------cccHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999999999999999999999999999999987532 111 12367999999999999998877644433
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhcccccccc--cc-chHHHHHHHHHHHHHHHHHhhhhhhhhee
Q 017017 233 VLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFG--KG-KVSYVMVIVWTAVSWQVCSVGVVGLIYVV 309 (379)
Q Consensus 233 ~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~--~g-~~~y~l~lv~~av~~q~~~~gv~glv~~~ 309 (379)
++.++ ..++..|...++.++++...+..++.+..+.+..... .. ...+...++.....+........-.+..+
T Consensus 170 ---~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (302)
T TIGR00817 170 ---IKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRV 245 (302)
T ss_pred ---cCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 11111 2334445555555444433333222222222111110 01 01121112222111111111111234567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 017017 310 SSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 358 (379)
Q Consensus 310 ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~ 358 (379)
++...++.....+.++.+++++++||+++..+++|+++++.|...|.+.
T Consensus 246 sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 246 SPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred CchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 8888888877666677889999999999999999999999999887754
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.84 E-value=1.3e-17 Score=166.68 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHH------hccccchHHHHHHHHHHHHHHHhh
Q 017017 116 TLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFI------NSQKFTALILNSVVILSLSAALIA 189 (379)
Q Consensus 116 ~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~li------l~ek~t~~~i~svvLl~~G~~ll~ 189 (379)
|.+...++.|++-...+.++.+|++|+|++.++++.+++|+|++++++++ +|||.+++++.|+++.++|++++.
T Consensus 76 ~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 76 SILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 33333444555544455567799999999999999999999999999999 699999999999999999999876
Q ss_pred ccCCCC---------------C-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 017017 190 VNEGSE---------------G-PSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVA 253 (379)
Q Consensus 190 ~~~~s~---------------~-~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva 253 (379)
.+++.. + +......+..+|+++.++|+++||+|..+.+...+|+ +.. ..+..+.++++
T Consensus 156 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~----~~~--~~~t~~~~~~~ 229 (358)
T PLN00411 156 FYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY----PAA--FTVSFLYTVCV 229 (358)
T ss_pred HccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CcH--hHHHHHHHHHH
Confidence 532210 0 0011122346799999999999999988876555443 211 22333444444
Q ss_pred HHHHH-HHHhhccc-cchhccccccccccc--hHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHH
Q 017017 254 TCICI-VGLFASGE-WRTLSGEMQGFGKGK--VSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVS 329 (379)
Q Consensus 254 ~~~~~-vgl~~~g~-~~~l~~e~~~f~~g~--~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ila 329 (379)
..++. .++..+++ .+... ..+ +.. ...|..+ .+.+.|.+...++ ...+...++....+.+.++.+++
T Consensus 230 ~~~~~~~~l~~~~~~~~~~~---~~~-~~~~~~i~y~~i-~t~lay~lw~~~v----~~~ga~~as~~~~L~PV~a~llg 300 (358)
T PLN00411 230 SIVTSMIGLVVEKNNPSVWI---IHF-DITLITIVTMAI-ITSVYYVIHSWTV----RHKGPLYLAIFKPLSILIAVVMG 300 (358)
T ss_pred HHHHHHHHHHHccCCcccce---ecc-chHHHHHHHHHH-HHHHHHHHHHHHH----hccCchHHHHHHhHHHHHHHHHH
Confidence 44443 34444432 11110 011 100 1122222 2334444444443 23344445555555555778899
Q ss_pred HHHhCCcchhHHHHHHHHHHHHHHHHHhccccccccc
Q 017017 330 VIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDDYRS 366 (379)
Q Consensus 330 vl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~~~k~ 366 (379)
++++||++++.+++|+++++.|+.....++.+|+|.+
T Consensus 301 ~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 301 AIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9999999999999999999999988776554444433
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.83 E-value=1.9e-17 Score=165.08 Aligned_cols=286 Identities=16% Similarity=0.135 Sum_probs=177.7
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 017017 55 FLIAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNML 134 (379)
Q Consensus 55 ~l~~g~~~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nll 134 (379)
.-...+...++..|.-.++ -+-+|..++.|..---+....++....++ .++ .+..++.+...++.|+.....+..
T Consensus 56 ~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~llp~gl~~~~~~~~ 130 (350)
T PTZ00343 56 TWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRK--IPR--IKSLKLFLKNFLPQGLCHLFVHFG 130 (350)
T ss_pred HHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCC--CCC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666655544 33489999999764332222222221111 111 110111222223345544444444
Q ss_pred HHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHH
Q 017017 135 YSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVG 214 (379)
Q Consensus 135 y~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~ 214 (379)
...|+++++++.++++.++.|+|+++++++++|||++++++.++++.++|+++...++. .....|++++++
T Consensus 131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~~~~~G~~~~l~ 201 (350)
T PTZ00343 131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------HFTWLAFWCAML 201 (350)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------hhHHHHHHHHHH
Confidence 44899999999999999999999999999999999999999999999999999753211 124779999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHHHH-Hhhccc-cchhc----cccccccccchHHHHH
Q 017017 215 ASAIYSLLLSLMQLSFQKVLKR-QSFGVVLDMQIYTSFVATCICIVG-LFASGE-WRTLS----GEMQGFGKGKVSYVMV 287 (379)
Q Consensus 215 Aa~~~al~l~l~~~~~kk~~~~-~~~~~vle~q~~~~lva~~~~~vg-l~~~g~-~~~l~----~e~~~f~~g~~~y~l~ 287 (379)
|++++++|.++.|+..++...+ +... ..++..+..+++.+.++.. .+.++. +.... .++..+...... + .
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l-~-~ 278 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIII-F-K 278 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHH-H-H
Confidence 9999999999987766543211 1111 2333333344555444432 223321 11000 011111111111 1 2
Q ss_pred HHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 288 IVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 288 lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
++.+.+.+.+...........++.+..++....+++++.++++++|||+++..+++|.++++.|...|.+
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 3344444444333222344567888888888888888899999999999999999999999999988865
No 8
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.82 E-value=5.1e-20 Score=173.38 Aligned_cols=290 Identities=15% Similarity=0.211 Sum_probs=210.3
Q ss_pred HHHHHHHHHhHhHHH--HHHHHHhc--CCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHH
Q 017017 51 VNIFFLIAGQAAAVI--LGRYYYDQ--GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGA 126 (379)
Q Consensus 51 ~~~~~l~~g~~~~~l--l~r~y~~~--~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl 126 (379)
+..+..++|+||++. ++.+..++ .|| +.|+.|......--++.. .+-...+ .+.|.. ..+...+.+-.
T Consensus 5 ~~ai~~vf~GCcsnvv~lE~L~~~~pgsgN---LITFaqFlFia~eGlif~---skf~~~k-~kiplk-~Y~i~V~mFF~ 76 (330)
T KOG1583|consen 5 AAAISLVFGGCCSNVVFLELLVRNEPGSGN---LITFAQFLFIATEGLIFT---SKFFTVK-PKIPLK-DYAITVAMFFI 76 (330)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHhCCCCee---ehHHHHHHHHHHhceeee---ccccccC-CCCchh-hhheehheeee
Confidence 344578889999988 66666554 467 999999655555433332 1111111 234433 33444455556
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCC---------
Q 017017 127 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGP--------- 197 (379)
Q Consensus 127 ~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~--------- 197 (379)
....||..+.+. +|...+.++++-.++.||+.+++++|+|++.+|+.|+++.++|+++-.+.++.|..
T Consensus 77 vnv~NN~al~f~---I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~ 153 (330)
T KOG1583|consen 77 VNVTNNYALKFN---IPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSG 153 (330)
T ss_pred eeeeccceeeec---ccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccC
Confidence 677788755444 44555999999999999999999999999999999999999999876544332211
Q ss_pred -CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH-H-Hhhccccchhcc-c
Q 017017 198 -SKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV-G-LFASGEWRTLSG-E 273 (379)
Q Consensus 198 -~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~v-g-l~~~g~~~~l~~-e 273 (379)
+..+.....+|+.+...|.+.+|...+..|..|||+.|+ .-|..+|.++.+.+.++. + .+.+ +|...-. |
T Consensus 154 ~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-----~~EalFytH~LsLP~Flf~~~div~-~~~~~~~se 227 (330)
T KOG1583|consen 154 SAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-----WKEALFYTHFLSLPLFLFMGDDIVS-HWRLAFKSE 227 (330)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHhccchHHHhcchHHH-HHHHHhcCc
Confidence 111223446899999999999999999999999999764 578888888887776663 2 1111 1211110 0
Q ss_pred ---cccccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Q 017017 274 ---MQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIW 350 (379)
Q Consensus 274 ---~~~f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~ 350 (379)
...+.---+..+..+..+.+++.+|.-||.-+...++|++.+++.+++.-++.+++++.|.+++++..++|.++++.
T Consensus 228 ~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~ 307 (330)
T KOG1583|consen 228 SYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFF 307 (330)
T ss_pred ceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHH
Confidence 00110002455666889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 017017 351 GFASYIY 357 (379)
Q Consensus 351 G~~~y~y 357 (379)
|...|.-
T Consensus 308 Gt~~fa~ 314 (330)
T KOG1583|consen 308 GTLLFAN 314 (330)
T ss_pred HHHHHHH
Confidence 9999944
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.76 E-value=9.9e-16 Score=144.77 Aligned_cols=207 Identities=12% Similarity=0.125 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchh
Q 017017 124 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKW 203 (379)
Q Consensus 124 ~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~ 203 (379)
.++....++.+|.+|++|+|+++.+++.+++|+++++++.+++|||++++++.++++.++|+.++..+++. +
T Consensus 53 ~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~--------~ 124 (260)
T TIGR00950 53 GALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL--------S 124 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc--------c
Confidence 34455788888889999999999999999999999999999999999999999999999999987543211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchH
Q 017017 204 KYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVS 283 (379)
Q Consensus 204 ~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~ 283 (379)
.+..|+++.+.|+++++.+..+.++..++. +... ..+..+...++.+++..-....++.... +.+.+ ...
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~----~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~---~~~ 194 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKE----GPEL-LQFTGWVLLLGALLLLPFAWFLGPNPQA--LSLQW---GAL 194 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcC----CchH-HHHHHHHHHHHHHHHHHHHHhcCCCCCc--chHHH---HHH
Confidence 246799999999999999888764444332 2111 1122233445555444333333321111 11111 112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 017017 284 YVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGF 352 (379)
Q Consensus 284 y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~ 352 (379)
.++.++.+.+.+.+...++ .+.+....+......++++.+++++++||++++.+++|.++++.|.
T Consensus 195 ~~~~~~~~~~~~~~~~~a~----~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGL----TLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 2334555555555554443 3456666777777888899999999999999999999999999875
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.72 E-value=1.6e-14 Score=140.20 Aligned_cols=261 Identities=12% Similarity=0.095 Sum_probs=162.0
Q ss_pred hHHHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHH-HHHHHHHHHhh-
Q 017017 62 AAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAIL-AGDNMLYSVGL- 139 (379)
Q Consensus 62 ~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~-~~~nlly~~gL- 139 (379)
.+.+..|.-.+ +-+.+..++.....--+++.+....+ ++ +. + .+|........|++. +..+.++.++.
T Consensus 22 ~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~-~~--~~----~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 91 (292)
T PRK11272 22 STYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLR-GH--PL----P-TLRQWLNAALIGLLLLAVGNGMVTVAEH 91 (292)
T ss_pred hHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHh-CC--CC----C-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777886555 33445555555544333333443321 11 11 1 123333334556554 45566666898
Q ss_pred ccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHH
Q 017017 140 LYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIY 219 (379)
Q Consensus 140 ~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~ 219 (379)
+++|++..+++..++|+|+++++++ +|||++++++.|+++.++|+.++..+++. +....|+++.++|+++|
T Consensus 92 ~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~~~~G~l~~l~a~~~~ 162 (292)
T PRK11272 92 QNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SGNPWGAILILIASASW 162 (292)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------ccchHHHHHHHHHHHHH
Confidence 9999999999999999999999986 69999999999999999999887443211 11357999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH-HHHhhccccchhccccccccccchHHHHHHHHHHHHHHHH
Q 017017 220 SLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICI-VGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVC 298 (379)
Q Consensus 220 al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~-vgl~~~g~~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~~ 298 (379)
|+|.... ||..++++ ....-++ ..++...+. .....++++...+ +.+.+ ....++.++.+++.+...
T Consensus 163 a~~~~~~----~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~i~~l~i~~s~~~~~l~ 230 (292)
T PRK11272 163 AFGSVWS----SRLPLPVG-MMAGAAE---MLAAGVVLLIASLLSGERLTALP-TLSGF---LALGYLAVFGSIIAISAY 230 (292)
T ss_pred HHHHHHH----HhcCCCcc-hHHHHHH---HHHHHHHHHHHHHHcCCcccccC-CHHHH---HHHHHHHHHHHHHHHHHH
Confidence 9987774 44422222 1111122 223333322 2222222211111 11111 122334566666666655
Q ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 299 SVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 299 ~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
..++ .+.+.-..++.....++.+.+++++++||+++..+++|+++++.|......
T Consensus 231 ~~~~----~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 231 MYLL----RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHH----hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5543 234455566666777778899999999999999999999999988877644
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.72 E-value=3.9e-15 Score=144.89 Aligned_cols=215 Identities=12% Similarity=0.192 Sum_probs=143.9
Q ss_pred HHHHHHHHhhcc-CChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHH
Q 017017 130 GDNMLYSVGLLY-LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILG 208 (379)
Q Consensus 130 ~~nlly~~gL~y-lp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G 208 (379)
.+..++..+++| +|++..+++.+++|+++++++++++|||++++++.++++.++|+.++..++.. . ......|
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-~-----~~~~~~G 144 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN-G-----QHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC-C-----cchhHHH
Confidence 344455578888 69999999999999999999999999999999999999999999887533211 1 1113579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH-HHHhhccccchhcccccccc--ccchHHH
Q 017017 209 FISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICI-VGLFASGEWRTLSGEMQGFG--KGKVSYV 285 (379)
Q Consensus 209 ~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~-vgl~~~g~~~~l~~e~~~f~--~g~~~y~ 285 (379)
+++++.|+++|++|..+.++..++ ......+.++.+.++++..++. .+...+++. ....+...+. .-....|
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 219 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSH----STRPAVMSLVVWSALIPIIPFFVASLILDGSA-TMIHSLVTIDMTTILSLMY 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----cCccchhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhccCCHHHHHHHHH
Confidence 999999999999998887554332 2222234455566665554444 233333321 1110000110 0011234
Q ss_pred HHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcc
Q 017017 286 MVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQN 359 (379)
Q Consensus 286 l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~ 359 (379)
+.++.+++.+.+...++..+ +.-.++.+....+.++.+++++++||+++..+++|+++++.|...-.+++
T Consensus 220 l~i~~t~~~~~l~~~~l~~~----~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 220 LAFVATIVGYGIWGTLLGRY----ETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 45677777777665554322 23344555556656778899999999999999999999999888766644
No 12
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.71 E-value=1.2e-15 Score=149.29 Aligned_cols=310 Identities=15% Similarity=0.229 Sum_probs=216.7
Q ss_pred hccchhHHHHHHHHHHHHHHHhHhHHHHHHHHHhc-CCCchhhHHHHHhchhhHhhhhhhcc----c---cc--cC----
Q 017017 39 KLKSWQWWVLVVVNIFFLIAGQAAAVILGRYYYDQ-GGNSKWLATLVQTAAFPILYIPLFLL----P---AS--QE---- 104 (379)
Q Consensus 39 ~~~~~~~w~~~~~~~~~l~~g~~~~~ll~r~y~~~-~g~~~w~~t~vq~agfp~l~~~~~~~----~---~~--~~---- 104 (379)
..++|| |.+-++..+++.+==..+.=+.++-|++ .-++++..|.+-++-|.+.++|..+. + .| +.
T Consensus 6 ~~~~~r-~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~ 84 (416)
T KOG2765|consen 6 FTKRWR-WTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAI 84 (416)
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhh
Confidence 345556 5444444444443334555566666665 45799999999999999998875521 0 01 00
Q ss_pred -C-----------------------------------C-----C-------CCCCC-hh------------HHHHHHHHH
Q 017017 105 -V-----------------------------------S-----S-------SSRYP-SF------------VTLALVYLV 123 (379)
Q Consensus 105 -~-----------------------------------~-----~-------~~~~p-~~------------~~~~~~~~~ 123 (379)
. + + +++.+ .. ++.+-++..
T Consensus 85 ~~e~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~ 164 (416)
T KOG2765|consen 85 MEEADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLF 164 (416)
T ss_pred hhhhhhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHH
Confidence 0 0 0 00011 12 266777888
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchh
Q 017017 124 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKW 203 (379)
Q Consensus 124 ~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~ 203 (379)
+..+...-|+.|+.+|.|++++..+++.+++-+||..++.++..||+|..+++++.+.+.|++++..+++.+ .++....
T Consensus 165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-~~~~~a~ 243 (416)
T KOG2765|consen 165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-NSDLPAS 243 (416)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-cccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999987665432 2233356
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH---HHhh---cc-ccchhcccccc
Q 017017 204 KYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV---GLFA---SG-EWRTLSGEMQG 276 (379)
Q Consensus 204 ~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~v---gl~~---~g-~~~~l~~e~~~ 276 (379)
+..+|+++++++|++||+|..+. ||-..++. .-+++|.+.++++..-+++ .+++ .+ |--++|...
T Consensus 244 ~~llG~llaL~sA~~YavY~vll----k~~~~~eg--~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~-- 315 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLL----KRKIGDEG--ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSST-- 315 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----Hhhccccc--ccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCc--
Confidence 68999999999999999999984 44333331 1245666666655433332 2211 11 111333321
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Q 017017 277 FGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYI 356 (379)
Q Consensus 277 f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~ 356 (379)
+...-....++.+.++=.++..++ ..++++...+.+++-+|++.++-+++=|.++++..++|.+.++.|+..-.
T Consensus 316 --q~~~vv~~~ligtvvSDylW~~a~----~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 316 --QFSLVVFNNLIGTVVSDYLWAKAV----LLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVN 389 (416)
T ss_pred --eeEeeeHhhHHHHHHHHHHHHHHH----HhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhee
Confidence 111112234777877766666664 56788889888999999999999999999999999999999999999988
Q ss_pred hccccccc
Q 017017 357 YQNYLDDY 364 (379)
Q Consensus 357 y~~~~~~~ 364 (379)
|....+.+
T Consensus 390 ~~~~~~~~ 397 (416)
T KOG2765|consen 390 ISSENSKK 397 (416)
T ss_pred cccccccc
Confidence 76544433
No 13
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.69 E-value=2.5e-14 Score=139.15 Aligned_cols=214 Identities=11% Similarity=0.107 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 017017 122 LVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVS 201 (379)
Q Consensus 122 ~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~ 201 (379)
+..++..+.++.+|.+|++++|+++.+++..+.|+++++++++++|||++++++.++++.++|++++..+++ +
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~------ 149 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S------ 149 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C------
Confidence 345666788899999999999999999999999999999999999999999999999999999998743211 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccc
Q 017017 202 KWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGK 281 (379)
Q Consensus 202 ~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~ 281 (379)
. .+..++|+++||+|..+. ||..+++... ......+...++.+. .... ...+...... ..+. ..
T Consensus 150 ---~---~~~~l~aa~~~a~~~i~~----r~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~-~~ 213 (296)
T PRK15430 150 ---L---PIIALGLAFSFAFYGLVR----KKIAVEAQTG-MLIETMWLLPVAAIY-LFAI-ADSSTSHMGQ--NPMS-LN 213 (296)
T ss_pred ---c---cHHHHHHHHHHHHHHHHH----HhcCCCCchh-HHHHHHHHHHHHHHH-HHHH-ccCCcccccC--CcHH-HH
Confidence 0 145777899999988774 3332222111 122222333222222 1111 1111100000 0010 00
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccc
Q 017017 282 VSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 282 ~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~ 361 (379)
..++...+.+++.+.+...+. .+.+.-..+......++++.+++++++||++++.+++|+++++.|......+.-.
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~----~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~ 289 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAA----TRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIY 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112223444444333332 3445556666777777788999999999999999999999999999998776543
Q ss_pred c
Q 017017 362 D 362 (379)
Q Consensus 362 ~ 362 (379)
.
T Consensus 290 ~ 290 (296)
T PRK15430 290 T 290 (296)
T ss_pred H
Confidence 3
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.62 E-value=8.5e-13 Score=128.21 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 017017 122 LVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVS 201 (379)
Q Consensus 122 ~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~ 201 (379)
...|+..+..+.++.++++|+|++..+++..++|+++++++ +||..+.+ ++.+.++|+.++...+. +.
T Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~--~~~i~~~Gv~li~~~~~-~~----- 142 (293)
T PRK10532 75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFV--WVVLAVLGLWFLLPLGQ-DV----- 142 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHH--HHHHHHHHHheeeecCC-Cc-----
Confidence 34566677788888899999999999999999999999887 36655544 46677899887642221 11
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccc
Q 017017 202 KWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGK 281 (379)
Q Consensus 202 ~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~ 281 (379)
+.....|+++.++|+++|+.|..+.++..+ +.+.... .+..+++..+........++ ....+...+ .
T Consensus 143 ~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~----~~~~~~~----~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~---~ 209 (293)
T PRK10532 143 SHVDLTGAALALGAGACWAIYILSGQRAGA----EHGPATV----AIGSLIAALIFVPIGALQAG--EALWHWSIL---P 209 (293)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhc----cCCchHH----HHHHHHHHHHHHHHHHHccC--cccCCHHHH---H
Confidence 112467999999999999998888754433 2222211 12233444333322222211 111111111 0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcc
Q 017017 282 VSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQN 359 (379)
Q Consensus 282 ~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~ 359 (379)
...|+.++.+++.|.+...++ .+.+...++......++++.+++++++||+++..+++|+++++.|...+.+.+
T Consensus 210 ~~l~lgv~~t~~~~~l~~~~~----~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 210 LGLAVAILSTALPYSLEMIAL----TRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 123566777777776655554 34455567777777777889999999999999999999999999998886543
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.60 E-value=1.8e-13 Score=133.03 Aligned_cols=213 Identities=8% Similarity=0.055 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHhhc----cCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCc-
Q 017017 125 GAILAGDNMLYSVGLL----YLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSK- 199 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~----ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~- 199 (379)
++.....+.++..++. ++|++..+++.+++|+|+++++++++|||++++++.++++.++|++++..++.+.+..+
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 147 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL 147 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence 3444555655545554 57888899999999999999999999999999999999999999998754322111000
Q ss_pred -cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhcccccccc
Q 017017 200 -VSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFG 278 (379)
Q Consensus 200 -~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~ 278 (379)
.+..+...|+++.++|+++|++|..+.++ ..++.... .+.. ..+.+.+.......+++ ..+.+ .
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~----~~~~~~~~---~~~~---~~~~~~l~~~~~~~~~~-~~~~~---~- 212 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVTRK----YARGKNGI---TLFF---ILTALALWIKYFLSPQP-AMVFS---L- 212 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHHhh----ccCCCCch---hHHH---HHHHHHHHHHHHHhcCc-cccCC---H-
Confidence 01122457999999999999998888644 32222211 1111 11112222222223221 11111 1
Q ss_pred ccchHHHH-HHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 279 KGKVSYVM-VIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 279 ~g~~~y~l-~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
+ .+.+.+ ..+.+++.+.+...++ .+.+....+......++++.+++++++||+++..+++|+++++.|......
T Consensus 213 ~-~~~~l~~~~~~t~~~~~l~~~al----~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 213 P-AIIKLLLAAAAMGFGYAAWNVGI----LHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH----HccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 0 111111 1122333333333332 234555566666666678899999999999999999999999999877644
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.60 E-value=5.3e-13 Score=128.72 Aligned_cols=216 Identities=6% Similarity=0.001 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCc
Q 017017 120 VYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSK 199 (379)
Q Consensus 120 ~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~ 199 (379)
..+..|+..+..+.++..|+++.|++..+.+..++|+++++++++++|||++++++.|+++.+.|+.++..++.. +
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~ 140 (281)
T TIGR03340 65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----Q 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----c
Confidence 334556667788888889999999999999999999999999999999999999999999999999987543211 1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccc
Q 017017 200 VSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGK 279 (379)
Q Consensus 200 ~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~ 279 (379)
....|+.+.+.++++|++|..+.++..++.. ..........+.......++..-....++. ..... .. .
T Consensus 141 ----~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~ 209 (281)
T TIGR03340 141 ----HRRKAYAWALAAALGTAIYSLSDKAAALGVP---AFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPY--AR-Q 209 (281)
T ss_pred ----cchhHHHHHHHHHHHHHHhhhhccccccchh---cccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhh--HH-H
Confidence 1235788899999999998887533221111 101111111111111111211111111111 11000 00 0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 017017 280 GKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 354 (379)
Q Consensus 280 g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~ 354 (379)
.....++..+.+.+.+.+...++...... ..+......++++.+++++++||+++..+++|+++++.|...
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~----~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVA----TVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCce----EEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 00112334555556665544443322221 122222344557788999999999999999999999998764
No 17
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.54 E-value=8.4e-13 Score=126.53 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 113 SFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 113 ~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
+.+|+. +.|+..+.|-.+-++++.|.|.|.|+++.++.++|..+|+.++--||+++.-...+.+..+|+.+....+
T Consensus 83 ~Lr~~a----Ptalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 83 YLRRLA----PTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred HHHHhh----hhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 354554 4477777777777789999999999999999999999999999999999998888888888877765543
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhHHHHHHHHHHHHHHHHHHHHhhccccchh
Q 017017 193 GSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVL--KRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTL 270 (379)
Q Consensus 193 ~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~--~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l 270 (379)
. .-...|+.++++|+++.|+.+.+.|...+|-. ++.+..++..+|-++++ .....++.++|....+
T Consensus 159 T---------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~ 226 (349)
T KOG1443|consen 159 T---------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLIT 226 (349)
T ss_pred c---------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccch
Confidence 2 23578999999999999999999999998852 45666777778877654 4444566677753322
Q ss_pred ccc-cccccccchHHHHHHHHH--HHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHH
Q 017017 271 SGE-MQGFGKGKVSYVMVIVWT--AVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLM 347 (379)
Q Consensus 271 ~~e-~~~f~~g~~~y~l~lv~~--av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~l 347 (379)
..+ .+.+..+....++..+.. ..+... ...-.-+...+++++.+++...+-..+.++|++..+|.++..++.|+.+
T Consensus 227 ~s~~f~~~d~~~~~rv~g~i~l~g~laF~l-~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i 305 (349)
T KOG1443|consen 227 SSSIFRFQDTGLILRVIGLISLGGLLAFLL-EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAI 305 (349)
T ss_pred hhhHHHhcCccHHHHHHHHHHHHHHHHHHH-HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 221 111212222111111111 011110 0111123334778888888777777888999999999999999999999
Q ss_pred HHHHHHHHHh
Q 017017 348 AIWGFASYIY 357 (379)
Q Consensus 348 vl~G~~~y~y 357 (379)
++.|...|-+
T Consensus 306 ~~agi~~~~~ 315 (349)
T KOG1443|consen 306 CLAGILLHRN 315 (349)
T ss_pred HHHHHHHhcc
Confidence 9999999833
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.50 E-value=9.3e-11 Score=111.10 Aligned_cols=214 Identities=14% Similarity=0.220 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 017017 122 LVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSY-FINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKV 200 (379)
Q Consensus 122 ~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~-lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~ 200 (379)
+..++..+..+.+|..++++++++..+++.++.|+++++++. +++|||++++++.++++.++|+.++..++..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~---- 149 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG---- 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch----
Confidence 344566678888888999999999999999999999999996 777999999999999999999999865433211
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhcccccccccc
Q 017017 201 SKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKG 280 (379)
Q Consensus 201 ~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g 280 (379)
.. +..|+++.+.+++.++++.... |+.. +.......-. +... ............ +.. .+.+...+
T Consensus 150 -~~-~~~g~~~~l~a~~~~a~~~~~~----~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~--- 214 (292)
T COG0697 150 -IL-SLLGLLLALAAALLWALYTALV----KRLS-RLGPVTLALL--LQLL-LALLLLLLFFLS-GFG-APILSRAW--- 214 (292)
T ss_pred -hH-HHHHHHHHHHHHHHHHHHHHHH----HHhc-CCChHHHHHH--HHHH-HHHHHHHHHHhc-ccc-ccCCHHHH---
Confidence 11 5789999999999999977775 4332 1111111110 1111 111111111111 111 11111011
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 017017 281 KVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 358 (379)
Q Consensus 281 ~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~ 358 (379)
....+..++.+.+.+.....++ ...+....+......++.+.+++++++||+++..+++|.++++.|.....+.
T Consensus 215 ~~~~~~g~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 215 LLLLYLGVFSTGLAYLLWYYAL----RLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 1111122333333333333332 1112222333333344455667999999999999999999999998888765
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.40 E-value=1.3e-10 Score=110.33 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCC
Q 017017 118 ALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGP 197 (379)
Q Consensus 118 ~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~ 197 (379)
.......|+..+.++.+|.+|++|+|+++++++.++.|+|+++++++++|||++++++.++++.++|++++..+ +++
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~-- 146 (256)
T TIGR00688 70 ILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGS-- 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCC--
Confidence 33345667888999999999999999999999999999999999999999999999999999999999887432 111
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017017 198 SKVSKWKYILGFISTVGASAIYSLLLSLMQ 227 (379)
Q Consensus 198 ~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~ 227 (379)
.. ++.++++++|++|....+
T Consensus 147 ------~~----~~~l~aa~~~a~~~i~~~ 166 (256)
T TIGR00688 147 ------LP----WEALVLAFSFTAYGLIRK 166 (256)
T ss_pred ------ch----HHHHHHHHHHHHHHHHHh
Confidence 01 357889999999888753
No 20
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.40 E-value=7.6e-11 Score=112.86 Aligned_cols=219 Identities=11% Similarity=0.098 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCC
Q 017017 116 TLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSE 195 (379)
Q Consensus 116 ~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~ 195 (379)
|.+....+.+++++.|-.+|.|+.++=.+-..|+=+-.+|+++.+++.+++|||+++.|+++++++.+|+....++.++-
T Consensus 70 ~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l 149 (293)
T COG2962 70 KTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL 149 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66667788899999999999999999888888999999999999999999999999999999999999999887765432
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHHHhhccccch-hc-c
Q 017017 196 GPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQS-FGVVLDMQIYTSFVATCICIVGLFASGEWRT-LS-G 272 (379)
Q Consensus 196 ~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~-~~~vle~q~~~~lva~~~~~vgl~~~g~~~~-l~-~ 272 (379)
. +.+++=|+.|++|..+ ||..+-+. ....+|+.... +++++-++-.+|..+ .. .
T Consensus 150 ---------p----wval~la~sf~~Ygl~-----RK~~~v~a~~g~~lE~l~l~-----p~al~yl~~l~~~~~~~~~~ 206 (293)
T COG2962 150 ---------P----WVALALALSFGLYGLL-----RKKLKVDALTGLTLETLLLL-----PVALIYLLFLADSGQFLQQN 206 (293)
T ss_pred ---------c----HHHHHHHHHHHHHHHH-----HHhcCCchHHhHHHHHHHHh-----HHHHHHHHHHhcCchhhhcC
Confidence 1 3445567789999888 66655443 23566766444 223322222223221 11 0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 017017 273 EMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGF 352 (379)
Q Consensus 273 e~~~f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~ 352 (379)
+...+ ....+.=..|++...++..+-.. .+--+-|+..-+.+.+.-++|+++|||+++..+.++-+.+-.|.
T Consensus 207 ~~~~~----~LLv~aG~vTavpL~lf~~aa~~----lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL 278 (293)
T COG2962 207 ANSLW----LLLVLAGLVTAVPLLLFAAAAKR----LPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLAL 278 (293)
T ss_pred CchHH----HHHHHhhHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 00000 01111112222332232222111 11112344444555577889999999999999999999999999
Q ss_pred HHHHhcccccccc
Q 017017 353 ASYIYQNYLDDYR 365 (379)
Q Consensus 353 ~~y~y~~~~~~~k 365 (379)
+.|......+.+|
T Consensus 279 ~l~~~d~l~~~r~ 291 (293)
T COG2962 279 ALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHHHhh
Confidence 9998876554444
No 21
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.35 E-value=4.5e-11 Score=113.57 Aligned_cols=223 Identities=15% Similarity=0.196 Sum_probs=144.3
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCC-CCccchhhhH
Q 017017 128 LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEG-PSKVSKWKYI 206 (379)
Q Consensus 128 ~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~-~~~~~~~~~~ 206 (379)
..+..++| .||.++++|.++.++-.-++|+.+|+.-+++++++.+||.|+....+|.++++..|-... .+..+.++..
T Consensus 97 i~gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ii 175 (372)
T KOG3912|consen 97 IAGSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSII 175 (372)
T ss_pred HhhhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccch
Confidence 36666888 999999999999999999999999999999999999999999999999999876542111 1122234457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH-H----HHhhccc-cchhccc-cccc--
Q 017017 207 LGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICI-V----GLFASGE-WRTLSGE-MQGF-- 277 (379)
Q Consensus 207 ~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~-v----gl~~~g~-~~~l~~e-~~~f-- 277 (379)
.|+++.+.|-+..|....+-|+..+|. . ...++..-|-++++...+. . ..+-.|| +..=|+. .++|
T Consensus 176 tGdllIiiaqiivaiQ~v~Eek~l~~~----n-V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~ 250 (372)
T KOG3912|consen 176 TGDLLIIIAQIIVAIQMVCEEKQLKKS----N-VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD 250 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhc----c-CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH
Confidence 799999999999999777655444443 1 1223333333443322111 1 1222332 1111110 0111
Q ss_pred ----cccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q 017017 278 ----GKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFA 353 (379)
Q Consensus 278 ----~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~ 353 (379)
..+.+..++++..+.++-..+-..-..+.++.|+.+-.+.-.++.-+.=+++...+.|.|...++.|.++.+.|..
T Consensus 251 ~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~ 330 (372)
T KOG3912|consen 251 AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGII 330 (372)
T ss_pred HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344555666666665544332222223344444444444445545556688888999999999999999999999
Q ss_pred HHH
Q 017017 354 SYI 356 (379)
Q Consensus 354 ~y~ 356 (379)
.|.
T Consensus 331 lY~ 333 (372)
T KOG3912|consen 331 LYN 333 (372)
T ss_pred HHH
Confidence 983
No 22
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.35 E-value=4.1e-12 Score=124.52 Aligned_cols=294 Identities=17% Similarity=0.198 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHhc-CCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHH
Q 017017 46 WVLVVVNIFFLIAGQAAAVILGRYYYDQ-GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVL 124 (379)
Q Consensus 46 w~~~~~~~~~l~~g~~~~~ll~r~y~~~-~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 124 (379)
+....++..+-.+.+.+..+..++-.+. +.+=+|..|.++.+-=-+...-........+ ++.+.+...++++.+
T Consensus 15 ~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~-~~~~~~~~~~~llpl---- 89 (316)
T KOG1441|consen 15 ILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPP-SKISSKLPLRTLLPL---- 89 (316)
T ss_pred hHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCC-CccccccchHHHHHH----
Confidence 4444444444444433333344443333 7788888888843322221111111111111 111112234455555
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhh
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWK 204 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~ 204 (379)
|+.......+=..+++|.|+|.++.+.++.|+||.++++++.+|++++..+.+++....|+++-...+. +-
T Consensus 90 ~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---------~f 160 (316)
T KOG1441|consen 90 GLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---------SF 160 (316)
T ss_pred HHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---------cc
Confidence 666666666666799999999999999999999999999999999999999999999999888654322 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHH--hhccccchhccccccccccch
Q 017017 205 YILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGL--FASGEWRTLSGEMQGFGKGKV 282 (379)
Q Consensus 205 ~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl--~~~g~~~~l~~e~~~f~~g~~ 282 (379)
+..|++.++.+-+.+++..++.+...++ |++. ...++..-+.+-++...+++-. ..+++- ....+.+.++-
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~--~~~~-~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~-~~~~~~~~~~~--- 233 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTS--KGES-LNSMNLLYYTAPISLIFLLIPFLDYVEGNK-FVGFLTAPWFV--- 233 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhc--cccc-cCchHHHHHhhhHHHHHHhcchHhhhcccc-eeeeeccccch---
Confidence 6899999999999999977776555532 1222 2245555555555544444221 122221 10001112211
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccc
Q 017017 283 SYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 283 ~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~ 361 (379)
.++..+... +...+.-+...-++..+|.++-++....+-.+..+.++++|+|+.|+.++.|+++++.|...|.+.+.+
T Consensus 234 ~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 234 TFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 112112222 222222233333445677777777776666777889999999999999999999999999998775533
No 23
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.33 E-value=1.1e-09 Score=106.70 Aligned_cols=224 Identities=14% Similarity=0.158 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHh-hhHHHHHHHHHHHhccccchHH----HHHHHHHHHHHHHhh
Q 017017 115 VTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICA-SQLAFNAVFSYFINSQKFTALI----LNSVVILSLSAALIA 189 (379)
Q Consensus 115 ~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~s-sql~Ftalfs~lil~ek~t~~~----i~svvLl~~G~~ll~ 189 (379)
++.+..++..|+..+..|+.|..+.+++.+++...+.+ ++++++++++.+++|||.++++ +.|+++..+|+.++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 46677788999999999999999999999999999988 9999999999999999999999 999999999998876
Q ss_pred ccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccch
Q 017017 190 VNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRT 269 (379)
Q Consensus 190 ~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~ 269 (379)
..++++.. +.+..++..|+++.+.|+++|++|....+.. +-+++..+. .|.+.-+++..+..... . +.+.
T Consensus 136 ~~~~~~~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-----~~~~~~~~~-~~~~g~~~~~~~~~~~~-~--~~~~ 205 (290)
T TIGR00776 136 RSKDKSAG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-----GVDGLSVLL-PQAIGMVIGGIIFNLGH-I--LAKP 205 (290)
T ss_pred eccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc-----CCCcceehh-HHHHHHHHHHHHHHHHH-h--cccc
Confidence 54322111 0101234569999999999999999997632 112222111 23332222332222211 0 1011
Q ss_pred hccccccccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHH----HHH
Q 017017 270 LSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKV----IAM 345 (379)
Q Consensus 270 l~~e~~~f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~----ig~ 345 (379)
...+ ..+ ......++| .+.+.....+... +.....+.+.+...+.++.+.+++++||+.+..+. +|.
T Consensus 206 ~~~~-~~~----~~~~~Gi~~-~ia~~~y~~~~~~---~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~ 276 (290)
T TIGR00776 206 LKKY-AIL----LNILPGLMW-GIGNFFYLFSAQP---KVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGI 276 (290)
T ss_pred hHHH-HHH----HHHHHHHHH-HHHHHHHHHHccc---ccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHH
Confidence 1110 000 000011222 2333333344321 33444566666777567788999999999999998 999
Q ss_pred HHHHHHHHHHHh
Q 017017 346 LMAIWGFASYIY 357 (379)
Q Consensus 346 ~lvl~G~~~y~y 357 (379)
++++.|...-.+
T Consensus 277 ~lIi~~~~l~~~ 288 (290)
T TIGR00776 277 ILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHhc
Confidence 999988876543
No 24
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.29 E-value=3.7e-10 Score=106.94 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=200.5
Q ss_pred hhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCc--hhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHH
Q 017017 43 WQWWVLVVVNIFFLIAGQAAAVILGRYYYDQGGNS--KWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALV 120 (379)
Q Consensus 43 ~~~w~~~~~~~~~l~~g~~~~~ll~r~y~~~~g~~--~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 120 (379)
..+|.--.+|+.-..++--.--.+..+-|+..|=+ -|-.|++|..--.. +.+...+--+..+...|....
T Consensus 38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg----~glie~~~~~~k~r~iP~rtY---- 109 (367)
T KOG1582|consen 38 KPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSG----FGLIELQLIQTKRRVIPWRTY---- 109 (367)
T ss_pred CchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHh----hhheEEEeecccceecchhHh----
Confidence 34477777777777777666667888888876644 79999999432211 112222110111223453222
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 017017 121 YLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKV 200 (379)
Q Consensus 121 ~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~ 200 (379)
+.+..+..+...+-.-++.|+.--+-.++.+++++=+++.+.++-++|+.+.-..+..++.+|.++-.+.|+..+|
T Consensus 110 -~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP--- 185 (367)
T KOG1582|consen 110 -VILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP--- 185 (367)
T ss_pred -hhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC---
Confidence 2223333333444446888888888999999999999999999999999999999999999999987776654333
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccc-chhccccccccc
Q 017017 201 SKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEW-RTLSGEMQGFGK 279 (379)
Q Consensus 201 ~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~-~~l~~e~~~f~~ 279 (379)
.-..+|..+.-+|-..=|+..=+.|..+++. .-+ .+||.++...++.++..+.+..+||. +.++. ..+
T Consensus 186 --NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~----~~s-s~EmvfySy~iG~vflf~~mvlTge~f~a~~f----cae 254 (367)
T KOG1582|consen 186 --NFNLIGVMMISGALLADAVIGNVQEKAMKMN----PAS-SSEMVFYSYGIGFVFLFAPMVLTGELFSAWTF----CAE 254 (367)
T ss_pred --CcceeeHHHHHHHHHHHHHhhHHHHHHHhhC----CCC-cceEEEeeecccHHHHHHHHHhcccchhhhHH----HHh
Confidence 3358899999999999999777766666554 212 37888888888888888888888862 21211 001
Q ss_pred cc--hHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 280 GK--VSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 280 g~--~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
-+ ...|. ++-. .+-.+....|..++..-..+.+..+.+.+..++.+++.++|..++|..-.-++++++.|+....|
T Consensus 255 hp~~tyGy~-~~~s-~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 255 HPVRTYGYA-FLFS-LAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY 332 (367)
T ss_pred CcHhHHHHH-HHHH-HHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence 11 22222 1111 11112223344566666778888899999999999999999999999999999999999999888
Q ss_pred cc
Q 017017 358 QN 359 (379)
Q Consensus 358 ~~ 359 (379)
.+
T Consensus 333 sk 334 (367)
T KOG1582|consen 333 SK 334 (367)
T ss_pred cC
Confidence 65
No 25
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.29 E-value=6.4e-11 Score=110.39 Aligned_cols=212 Identities=15% Similarity=0.172 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHH
Q 017017 128 LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYIL 207 (379)
Q Consensus 128 ~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~ 207 (379)
.-.|++.+ .++.+.++....+. +.|.+.++++...+++++++..||.++.++..|+.....++..++ ....++...
T Consensus 10 ~~s~~l~~-v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~--~~~~g~~~~ 85 (222)
T TIGR00803 10 FKQNNLVL-IALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK--TLMFGNPVV 85 (222)
T ss_pred HHhcchHH-HHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc--ccccccHHH
Confidence 33444555 88888888888888 899999999999999999999999888888888777654432211 112245678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHHHH
Q 017017 208 GFISTVGASAIYSLLLSLMQLSFQKVLKRQ-SFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVM 286 (379)
Q Consensus 208 G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~-~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y~l 286 (379)
|..+.+.++...++ ...+.|+..|+. ...+...++. .++..+....+.... +....+. .++.+|......
T Consensus 86 g~~~~l~a~~~~~~----~~~y~e~~~k~~~~~~~~~~~~l--~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 156 (222)
T TIGR00803 86 GLSAVLSALLSSGF----AGVYFEKILKDGDTMFWSRNLQL--PLFGLFSTFSVLLWS-DGTLISN--FGFFIGYPTAVW 156 (222)
T ss_pred HHHHHHHHHHHHhh----hHHHHHHcccCCCCchHHHHHHH--HHHHHHHHHHHHhhc-ccchhhc--cCcccCCchHHH
Confidence 98889889988888 444455543332 1112222222 222222223333332 2222222 233344333222
Q ss_pred HHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 287 VIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 287 ~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
.++.+.. +.+.-+..+.++.++++++++.+.++.++.++++++|||+++..+++|+.+++.|...|
T Consensus 157 ~~~~~~a---~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLLNV---GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHH---hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 2222211 22244667788999999999999999999999999999999999999999999776554
No 26
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.29 E-value=7.3e-11 Score=102.93 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccc----cchH
Q 017017 208 GFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGK----GKVS 283 (379)
Q Consensus 208 G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~----g~~~ 283 (379)
|+++++.|+++.|++.++.|+.+++..++......++++.+.+..+.+.+.+..+..++++..+... .... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFS-EIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-HhhhhhhcchHH
Confidence 7899999999999999999888887522223345788999999999988887766655543222211 1111 1334
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 284 YVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 284 y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
.+..++.+++.+.+..+....++..+|+++.+++..++.+++.++++++|||++|..+++|+++++.|...|.|
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 55567777888888778888899999999999999999999999999999999999999999999999999976
No 27
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.7e-10 Score=107.23 Aligned_cols=216 Identities=15% Similarity=0.180 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhh
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWK 204 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~ 204 (379)
.+-+.+.-.--..+++|.|-.|..+=.+++|+=+|+++.++.+++++|++...+.+..+|+++-...+..- .+.++..
T Consensus 92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv--~g~e~~t 169 (337)
T KOG1580|consen 92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV--GGAEDKT 169 (337)
T ss_pred HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc--CCCcccc
Confidence 33333333444468999999999999999999999999999999999999999999999999976654322 1333445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHH
Q 017017 205 YILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSY 284 (379)
Q Consensus 205 ~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y 284 (379)
...|.++.+.+-.+=|+-.+..++..+.+ .++. -+|++++.+-+++.+.+|++..||..++-+-.+. +-
T Consensus 170 ~g~GElLL~lSL~mDGlTg~~Qdrira~y-q~~g----~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~R--hP---- 238 (337)
T KOG1580|consen 170 FGFGELLLILSLAMDGLTGSIQDRIRASY-QRTG----TSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQR--HP---- 238 (337)
T ss_pred cchHHHHHHHHHHhcccchhHHHHHHHhh-ccCc----hhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHh--cc----
Confidence 68899999999999999666665555544 3333 2345555556677788899888873332110000 11
Q ss_pred HHHHHHHHHHHHHHH-hh---hhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 285 VMVIVWTAVSWQVCS-VG---VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 285 ~l~lv~~av~~q~~~-~g---v~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
.++|......+++ +| +.-.+.+-+.+..+++.+.+.-.+.+.+|++|++++++.+++|.++++.+...=
T Consensus 239 --~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 --YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred --HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 1222221111111 12 111223346667788888899999999999999999999999999999877654
No 28
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.7e-11 Score=116.00 Aligned_cols=233 Identities=18% Similarity=0.232 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCC
Q 017017 114 FVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEG 193 (379)
Q Consensus 114 ~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~ 193 (379)
.+++..+.++.=.++..||+ .|+|.+++.|.+=+++..+||.+++|+++|||-+..-. ..++.+++++.-+
T Consensus 102 ~r~vlplsvVfi~mI~fnnl----cL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~-----~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNL----CLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFAL-----GCCLLIILGFGLG 172 (347)
T ss_pred HHhhcchhheeeeehhccce----ehhhcceEEEEeccchhhhHHHHhHHhhcccccccccc-----eeehhheehheec
Confidence 55666666776677789997 78999999999999999999999999999999988865 4555555554333
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccc
Q 017017 194 SEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGE 273 (379)
Q Consensus 194 s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e 273 (379)
.|. ++.++.-...|.+.-+.|++.-|+-.+.+ ||+..... .-.-.+..|....|.++++..+.+.||++++-.
T Consensus 173 vdq-E~~~~~ls~~GvifGVlaSl~vAlnaiyt----kk~l~~v~-~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~- 245 (347)
T KOG1442|consen 173 VDQ-EGSTGTLSWIGVIFGVLASLAVALNAIYT----KKVLPPVG-DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVG- 245 (347)
T ss_pred ccc-ccccCccchhhhHHHHHHHHHHHHHHHhh----heeccccc-CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcC-
Confidence 222 11223335789999999999999955554 45432211 112235566778888888888889999876633
Q ss_pred cccccc-cchHHHHHHHHHHHHHHHHHhh-hhh-hhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Q 017017 274 MQGFGK-GKVSYVMVIVWTAVSWQVCSVG-VVG-LIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIW 350 (379)
Q Consensus 274 ~~~f~~-g~~~y~l~lv~~av~~q~~~~g-v~g-lv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~ 350 (379)
|.+ +.+.+|..+.-..+.-.. +| ++| .++.+|.++-++-.+.+-....++|+.+++|.-+..-+-+-++++.
T Consensus 246 ---~~~l~a~~Fw~~mtLsglfgF~--mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLv 320 (347)
T KOG1442|consen 246 ---FPHLPAIKFWILMTLSGLFGFA--MGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLV 320 (347)
T ss_pred ---cccchHHHHHHHHHHHHHHHHH--hhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEe
Confidence 221 223334322222222111 22 222 4556888888888888878889999999999999999999999999
Q ss_pred HHHHHHhcccccccccc
Q 017017 351 GFASYIYQNYLDDYRSR 367 (379)
Q Consensus 351 G~~~y~y~~~~~~~k~~ 367 (379)
|...|.+-+..+++|+.
T Consensus 321 gs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 321 GSLAYTLVKEHEMRKAS 337 (347)
T ss_pred hhHHHHHHHHHHHHhhc
Confidence 99999887655555443
No 29
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.03 E-value=2.6e-10 Score=107.79 Aligned_cols=206 Identities=17% Similarity=0.173 Sum_probs=123.1
Q ss_pred HHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc-----CCC--CCCCccc
Q 017017 129 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN-----EGS--EGPSKVS 201 (379)
Q Consensus 129 ~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~-----~~s--~~~~~~~ 201 (379)
.+-.++| +++.|+|.+.+++|.-+.|.||.+|++.++|||+|++..++.++.+.|++++.-. ++. ++.++.+
T Consensus 109 tgvmlmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~ 187 (346)
T KOG4510|consen 109 TGVMLMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE 187 (346)
T ss_pred hHHHHHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc
Confidence 3445677 8999999999999999999999999999999999999999999999999998422 211 1111111
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhcccccccccc
Q 017017 202 KWKYILGFISTVGASAIYS-LLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKG 280 (379)
Q Consensus 202 ~~~~~~G~ll~L~Aa~~~a-l~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g 280 (379)
....|-..++.++..-+ .|.+ .|++.|+-.+.+.+ -|.++++.+..++|...-|++ .+|+.-+++-
T Consensus 188 --~~~~gt~aai~s~lf~asvyIi-----lR~iGk~~h~~msv---syf~~i~lV~s~I~~~~ig~~-~lP~cgkdr~-- 254 (346)
T KOG4510|consen 188 --YDIPGTVAAISSVLFGASVYII-----LRYIGKNAHAIMSV---SYFSLITLVVSLIGCASIGAV-QLPHCGKDRW-- 254 (346)
T ss_pred --ccCCchHHHHHhHhhhhhHHHH-----HHHhhccccEEEEe---hHHHHHHHHHHHHHHhhccce-ecCccccceE--
Confidence 12334444443333332 2333 37766665554322 244667777777887776776 5776433221
Q ss_pred chHHHHHHHHHHHHHHH-HHhhhhhhhheehhhHHHHHHHHHHH-HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Q 017017 281 KVSYVMVIVWTAVSWQV-CSVGVVGLIYVVSSLFSNVISTSSLA-ITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYI 356 (379)
Q Consensus 281 ~~~y~l~lv~~av~~q~-~~~gv~glv~~~ssl~~~vv~~~~~p-ls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~ 356 (379)
.+..+.-..+.-|+ ...|+- +-.+. -+-++++... .+.+..+++||+..|+..++|+++++.....-.
T Consensus 255 ---l~~~lGvfgfigQIllTm~lQ--iErAG---pvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 255 ---LFVNLGVFGFIGQILLTMGLQ--IERAG---PVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred ---EEEEehhhhhHHHHHHHHHhh--hhccC---CeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 01111111112221 112210 00000 0011223333 445688999999999999999998875444433
No 30
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.9e-07 Score=90.77 Aligned_cols=284 Identities=13% Similarity=0.152 Sum_probs=167.9
Q ss_pred HHHHhHhHHHHHHHHHhc-CCCchhhHHHHHhchhhHhhhhhhccccccCCC-CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 017017 56 LIAGQAAAVILGRYYYDQ-GGNSKWLATLVQTAAFPILYIPLFLLPASQEVS-SSSRYPSFVTLALVYLVLGAILAGDNM 133 (379)
Q Consensus 56 l~~g~~~~~ll~r~y~~~-~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~Gl~~~~~nl 133 (379)
=.+..+.-++.-++--++ +-|.....-+.|.-.-.+.+ ++-.+-+--+ +.......+|++.. -+++.++-.
T Consensus 20 Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v---~~lk~~~lv~~~~l~~~~~kk~~P~----~~lf~~~i~ 92 (314)
T KOG1444|consen 20 YCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVV---LVLKRLGLVNFRPLDLRTAKKWFPV----SLLFVGMLF 92 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---HHHHHhceeecCCcChHHHHHHccH----HHHHHHHHH
Confidence 334444444555554443 44555555567754444332 1111100001 10011124455444 555566665
Q ss_pred HHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHH
Q 017017 134 LYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTV 213 (379)
Q Consensus 134 ly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L 213 (379)
.=..+++|++++++++++...++++++.-..++|.|+++..+.+++++.+|....+..|.+. ...|....+
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf---------~~~gY~w~~ 163 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF---------NLRGYSWAL 163 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee---------cchhHHHHH
Confidence 55579999999999999999999999999999999999999999999999988876655432 234888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHHHHHHHHHHH
Q 017017 214 GASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAV 293 (379)
Q Consensus 214 ~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y~l~lv~~av 293 (379)
...++-+.+.... ||..+.... .-.++..|-.+++.++..+-.+..|||+++..+...+.+ ...++.+....+
T Consensus 164 ~n~~~~a~~~v~~----kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~~lScv 236 (314)
T KOG1444|consen 164 ANCLTTAAFVVYV----KKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVMLLSCV 236 (314)
T ss_pred HHHHHHHHHHHHH----HHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHHHHHHH
Confidence 8998888877775 444332211 112344555667777777766777887644333222211 111222222221
Q ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 017017 294 SWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLD 362 (379)
Q Consensus 294 ~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~ 362 (379)
.=++......--.-..|+++-+++-..-+-.+.+..++++|.++++.+.+|+.+.+.|-+.|.|.++++
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~ 305 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK 305 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence 111100000000011344444444433334556667777788999999999999999999999976543
No 31
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.87 E-value=1.4e-07 Score=90.97 Aligned_cols=217 Identities=17% Similarity=0.226 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhh
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWK 204 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~ 204 (379)
++.....-.+--.+|+|++--|..+-.+++.+=+|+.+.++-|+|++.+.-....+.+.|+.+-.+.+.+|++.+..+.+
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 55444444555599999999999999999999999999999999999999999999999988766555444333332346
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccc-chhcccccccc--ccc
Q 017017 205 YILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEW-RTLSGEMQGFG--KGK 281 (379)
Q Consensus 205 ~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~-~~l~~e~~~f~--~g~ 281 (379)
.++|+.+..+.-++=|+ +.-+.+++.+++. .....|+++..++.++....+++..|.+ +.+. |- +-+
T Consensus 170 s~~G~~Ll~~~L~fDgf----Tn~tQd~lf~~~k-~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~-----F~~~hp~ 239 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGF----TNATQDSLFKKYK-VSSLHMMFGVNLFSAILNGTYLILQGHLLPAVS-----FIKEHPD 239 (327)
T ss_pred chHhHHHHHHHHHHHhh----HHhHHHHHhccCC-ccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHH-----HHHcChh
Confidence 78999999888887787 4444555544322 2345688888888888888887666643 1111 11 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhh--e----ehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 282 VSYVMVIVWTAVSWQVCSVGVVGLIY--V----VSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 282 ~~y~l~lv~~av~~q~~~~gv~glv~--~----~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
....+ +.+..| |.+|..+ + -.++.-..+++.+..++.+++.++||.+++..++++..+++.|...=
T Consensus 240 ~~~Di------~l~s~~--gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 240 VAFDI------LLYSTC--GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE 311 (327)
T ss_pred HHHHH------HHHHHh--hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence 22222 222222 2333333 1 34666777889999999999999999999999999999999877765
Q ss_pred Hhcc
Q 017017 356 IYQN 359 (379)
Q Consensus 356 ~y~~ 359 (379)
.|-+
T Consensus 312 ~~~k 315 (327)
T KOG1581|consen 312 ILLK 315 (327)
T ss_pred HHHH
Confidence 6644
No 32
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=86.26 Aligned_cols=214 Identities=17% Similarity=0.218 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccch
Q 017017 123 VLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSK 202 (379)
Q Consensus 123 ~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~ 202 (379)
++-++..+.|++|-.+++.++++..+-+.+++-.|+-+++++.+|+|+.-.++.+.++++.|+++++..|. +.
T Consensus 58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-------~~ 130 (290)
T KOG4314|consen 58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-------EH 130 (290)
T ss_pred ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-------hh
Confidence 34567788899999999999999999999999999999999999999999999999999999999875432 13
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch---hhHHHHHHHHHHHHHHHHH---HHHhhccccchhcccccc
Q 017017 203 WKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSF---GVVLDMQIYTSFVATCICI---VGLFASGEWRTLSGEMQG 276 (379)
Q Consensus 203 ~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~---~~vle~q~~~~lva~~~~~---vgl~~~g~~~~l~~e~~~ 276 (379)
...++|+.++++++...++| +++||+.+..-.+ .+.+.-. +++..++.. +-+...|- +.++ +
T Consensus 131 a~e~iGi~~AV~SA~~aAlY----KV~FK~~iGnAn~Gdaa~FmS~L---GF~NL~~~~~~~lIL~~T~V-E~~q----s 198 (290)
T KOG4314|consen 131 ADEIIGIACAVGSAFMAALY----KVLFKMFIGNANFGDAAHFMSCL---GFFNLCFISFPALILAFTGV-EHLQ----S 198 (290)
T ss_pred hhhhhhHHHHHHHHHHHHHH----HHHHHHHhccCcchhHHHHHHHH---HHHHHHHHhhhHHHHHHhch-HHHH----H
Confidence 44699999999999999995 5558887654322 2222111 111111111 11122221 1121 1
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Q 017017 277 FGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYI 356 (379)
Q Consensus 277 f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~ 356 (379)
|...+ |-.+++.+..|.++-.-+.--+.....+.-++=+.+.+|.....-.++=+-.++.....+..++..|+...+
T Consensus 199 FA~~P---WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 199 FAAAP---WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred HhhCC---chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 21111 122445555555443332222233455555555667778888877776666778888999999999988876
Q ss_pred hc
Q 017017 357 YQ 358 (379)
Q Consensus 357 y~ 358 (379)
..
T Consensus 276 iP 277 (290)
T KOG4314|consen 276 IP 277 (290)
T ss_pred cc
Confidence 63
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.77 E-value=5.1e-08 Score=81.68 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=63.3
Q ss_pred HHHHHHHH-HHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCC
Q 017017 122 LVLGAILA-GDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEG 193 (379)
Q Consensus 122 ~~~Gl~~~-~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~ 193 (379)
+..|++.. .++.+|.+|++|.| +..+.+.+++|+|+++++.+++|||++++++.++++.++|++++..++.
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34456554 88899999999999 5888999999999999999999999999999999999999999987654
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.63 E-value=2.4e-05 Score=74.07 Aligned_cols=203 Identities=16% Similarity=0.133 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccch
Q 017017 123 VLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSK 202 (379)
Q Consensus 123 ~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~ 202 (379)
..|+.++..|++|-.++..+|.++..-+--+.|+-.++++ .+|..-..|++ ++..|..++.-...+.+
T Consensus 76 ~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwva--LAvlGi~lL~p~~~~~~------ 143 (292)
T COG5006 76 AYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVA--LAVLGIWLLLPLGQSVW------ 143 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHH--HHHHHHHhheeccCCcC------
Confidence 3488888888777799999999999988888888777655 56665555655 46667666633222211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HHHHHhhccccchhccccccccccc
Q 017017 203 WKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCI-CIVGLFASGEWRTLSGEMQGFGKGK 281 (379)
Q Consensus 203 ~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~-~~vgl~~~g~~~~l~~e~~~f~~g~ 281 (379)
.-+..|..++++|.++|++|.+.+|+.=+ ..+-...+..- .+++.++ +-+|..-.|. .+-. ...=.
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~----~~~g~~g~a~g---m~vAaviv~Pig~~~ag~--~l~~----p~ll~ 210 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRAGR----AEHGTAGVAVG---MLVAALIVLPIGAAQAGP--ALFS----PSLLP 210 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchhcc----cCCCchHHHHH---HHHHHHHHhhhhhhhcch--hhcC----hHHHH
Confidence 22589999999999999999999855443 22211112111 1222222 2244322221 1110 00000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 017017 282 VSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 354 (379)
Q Consensus 282 ~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~ 354 (379)
...-+.+..+++-|.+=-+....+-.. .=++.+++++.+..+.+++++||.+|..|+.++.+++.+.+=
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp~~----~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLPAR----TFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCChh----HHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 011122444444444433333333222 123344566668899999999999999999999999876653
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.58 E-value=5.1e-07 Score=74.77 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=61.4
Q ss_pred HHHHHH-HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 122 LVLGAI-LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 122 ~~~Gl~-~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
+..|++ .+..+.+|..+++++|++..+.+..++|+++++++++++|||++++++.|+++.++|++++
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334555 5888899999999999999999999999999999999999999999999999999999876
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.38 E-value=8.9e-08 Score=90.34 Aligned_cols=257 Identities=14% Similarity=0.173 Sum_probs=158.1
Q ss_pred cCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHh
Q 017017 73 QGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICA 152 (379)
Q Consensus 73 ~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~s 152 (379)
+|-|-+=.+|++.-+-..+..-|..++++ +...-.+--|+++++.-.-.|++-..+.+|++-...+++-+
T Consensus 43 k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~----------~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDc 112 (336)
T KOG2766|consen 43 KGINAPTSQTFLNYVLLALVYGPIMLFRR----------KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDC 112 (336)
T ss_pred ccCCCccHHHHHHHHHHHHHHhhHHHhhh----------HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHH
Confidence 34455667887775554444444444322 11111112267778877777866668999999999999999
Q ss_pred hhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 153 SQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQK 232 (379)
Q Consensus 153 sql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk 232 (379)
=..+-.++++++++|-|+.+.++.|+++-..|++++.+.|-..+ +...+.+...|+.+++++|-+||..-..-|..-||
T Consensus 113 waip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag-d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn 191 (336)
T KOG2766|consen 113 WAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG-DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN 191 (336)
T ss_pred hhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc-cccCCCCCccCcEEEEecceeeeeccccHHHHHhc
Confidence 99999999999999999999999999999999998866553221 12224567889999999999999954443333333
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHhhccc-cchhccccccccccchHHHHHHHHHHHHHHHHHhhhhhhhheehh
Q 017017 233 VLKRQSFGVVLDMQIYTSFVATCICIVGLFASGE-WRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSS 311 (379)
Q Consensus 233 ~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~-~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ss 311 (379)
. + ..|..-..++++++...+-.+.+.. -..+. | +++...|+. .+++..+..--..-+....++
T Consensus 192 ~----d---~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~-----w-~~~i~~yl~---f~L~MFllYsl~pil~k~~~a 255 (336)
T KOG2766|consen 192 A----D---RVELMGFLGLFGAIISAIQFIFERHHVSTLH-----W-DSAIFLYLR---FALTMFLLYSLAPILIKTNSA 255 (336)
T ss_pred C----c---HHHHHHHHHHHHHHHHHHHHhhhccceeeEe-----e-hHHHHHHHH---HHHHHHHHHHhhHHheecCCc
Confidence 2 2 3455555678888877776544432 12221 1 122222221 333333333222222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 017017 312 LFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 358 (379)
Q Consensus 312 l~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~ 358 (379)
..-|+-....=-.+.+. -.||-+++|.-.++...+..|+.+|...
T Consensus 256 T~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 256 TMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred eEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 21111100000112222 6688889999999999999999998543
No 37
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.27 E-value=0.00011 Score=70.90 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHH----HHHHHHHHHHHhh
Q 017017 115 VTLALVYLVLGAILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILN----SVVILSLSAALIA 189 (379)
Q Consensus 115 ~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~----svvLl~~G~~ll~ 189 (379)
.+.+..+++.|+..+..|.....+.+++.+|.. =+-...|++.|.+.++++++|--+..++. ++++..+|+.+..
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 377888999999999999888788888777655 34458899999999999999988776654 8888999999887
Q ss_pred ccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 190 VNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQL 228 (379)
Q Consensus 190 ~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~ 228 (379)
.+++.++. ..++++..-|.+..+.+++.|.+|-.+.+.
T Consensus 122 ~~~~~~~~-~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 122 YQDKKSDK-SSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred cccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 76554331 122345566999999999999999888544
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.20 E-value=1.4e-05 Score=67.11 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 126 AILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
+.++...+++..+++.+|.+..-.+-+++++++++.+++++|||+|++++.|+++.++|+++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45677889999999999999998888899999999999999999999999999999999998753
No 39
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.14 E-value=0.0001 Score=69.52 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 017017 128 LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSA 185 (379)
Q Consensus 128 ~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~ 185 (379)
.+....+|..+++++|+++.+++..++|++++++++++++||+++.++.|.++.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 4667788889999999999999999999999999999999999999999999999885
No 40
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.13 E-value=0.00011 Score=74.01 Aligned_cols=69 Identities=7% Similarity=-0.006 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCC
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEG 193 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~ 193 (379)
|+..+....+|.+++++++++..++....+|+|++++++++++|++++.+++|.++...|+.+...+..
T Consensus 263 ~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 263 AIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566778999999999999999999999999999999999999999999999999999998865543
No 41
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00019 Score=67.02 Aligned_cols=261 Identities=16% Similarity=0.184 Sum_probs=150.3
Q ss_pred CCCchhhHHHHHhchhhHhhhhh-hccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHh
Q 017017 74 GGNSKWLATLVQTAAFPILYIPL-FLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICA 152 (379)
Q Consensus 74 ~g~~~w~~t~vq~agfp~l~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~s 152 (379)
|-|.-++.-+||.--...-+..+ ++-..+-| ..-.++++.++.++ ...-+--+-+++|+|++.|+++..
T Consensus 33 gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR------~t~aK~WfpiSfLL----v~MIyt~SKsLqyL~vpiYTiFKN 102 (309)
T COG5070 33 GFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR------LTKAKKWFPISFLL----VVMIYTSSKSLQYLAVPIYTIFKN 102 (309)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhHhhee------hhhhhhhcCHHHHH----HHHHHhcccceeeeeeeHHHHhcc
Confidence 55877777778865444422211 11111111 01123444443332 332333346889999999999999
Q ss_pred hhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 153 SQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQK 232 (379)
Q Consensus 153 sql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk 232 (379)
+.++..+..-.+++|.|.+.....+-+++.++.+.-.++|.+..... .+-.-.|.+.....+...+.+...+ ||
T Consensus 103 ltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~--~~~lN~GY~Wm~~NclssaafVL~m----rk 176 (309)
T COG5070 103 LTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK--AQILNPGYLWMFTNCLSSAAFVLIM----RK 176 (309)
T ss_pred ceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH--hcccCCceEEEehhhHhHHHHHHHH----HH
Confidence 99999999999999999999999999999999888666553221100 0111236666677777777776664 44
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhh
Q 017017 233 VLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSL 312 (379)
Q Consensus 233 ~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl 312 (379)
.+|-+.+. -.|-.+|-.+.+.++.+.--+..+||..- .-..++..- .+.|-+++ .+|.+|..--..|.-.+
T Consensus 177 ri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d------~l~am~IS-gl~svgiSy~saWcvrV 247 (309)
T COG5070 177 RIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVD------SLMAMFIS-GLCSVGISYCSAWCVRV 247 (309)
T ss_pred hhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChH------HHHHHHHH-HHHHhhhhhccceeEee
Confidence 44433322 13345566666666666433344466421 112233211 12222221 22334432223333333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcc
Q 017017 313 F----SNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQN 359 (379)
Q Consensus 313 ~----~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~ 359 (379)
+ -+.+..+-.....+.+.++||++.+..++.++.+-+..-++|.+.+
T Consensus 248 tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 248 TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred hhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333333333446678899999999999999999888888887753
No 42
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.02 E-value=0.00017 Score=70.92 Aligned_cols=67 Identities=25% Similarity=0.309 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCC
Q 017017 127 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEG 193 (379)
Q Consensus 127 ~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~ 193 (379)
+++.++.+-..++.+.|++..+=+.+.+++++++++.+++|||++++.+.|.++..+|.+++.....
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~ 125 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAP 125 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCC
Confidence 3456666666899999999999999999999999999999999999999999999999988765443
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.99 E-value=0.00018 Score=62.43 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHhc------CCCchhhHHHHHhchhhHhhhhhhccccccC-C--CCCCC--CChhHHHHHHHHHHHHHHHHHH
Q 017017 64 VILGRYYYDQ------GGNSKWLATLVQTAAFPILYIPLFLLPASQE-V--SSSSR--YPSFVTLALVYLVLGAILAGDN 132 (379)
Q Consensus 64 ~ll~r~y~~~------~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~-~--~~~~~--~p~~~~~~~~~~~~Gl~~~~~n 132 (379)
.++.+...++ .-+..=+.......++++++++.++.-..+. . .+... .....+....-+..|+.....|
T Consensus 16 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 95 (153)
T PF03151_consen 16 NVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYN 95 (153)
T ss_pred HHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3355555444 2233445666777778887776665422211 0 00000 0012244555566788888888
Q ss_pred HHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 017017 133 MLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 187 (379)
Q Consensus 133 lly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~l 187 (379)
+.-..-++++++.|++++...+-+.+.++++++++|++|..++.|+++.++|+.+
T Consensus 96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 8888999999999999999999999999999999999999999999999999865
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.97 E-value=4.4e-05 Score=65.30 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=86.6
Q ss_pred hHHHHHHHHHh-cCCCchhhHHHHHhchhhHhhhhhhccccccC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017017 62 AAVILGRYYYD-QGGNSKWLATLVQTAAFPILYIPLFLLPASQE-VSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGL 139 (379)
Q Consensus 62 ~~~ll~r~y~~-~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL 139 (379)
..++..+.=-+ .+.+ ++|.+-+.-....+....+..-+.. ..+ ..+|.+..-++.|+..++.-++|..++
T Consensus 17 L~~iF~KIGl~~vdp~---~At~IRtiVi~~~l~~v~~~~g~~~~~~~-----~~~k~~lflilSGla~glswl~Yf~AL 88 (140)
T COG2510 17 LTPIFAKIGLEGVDPD---FATTIRTIVILIFLLIVLLVTGNWQAGGE-----IGPKSWLFLILSGLAGGLSWLLYFRAL 88 (140)
T ss_pred HHHHHHHHhccccCcc---HHHHHHHHHHHHHHHHHHHhcCceecccc-----cCcceehhhhHHHHHHHHHHHHHHHHH
Confidence 55666666444 3555 7777765443333222222211111 111 233555566788999999999999999
Q ss_pred ccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 017017 140 LYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 189 (379)
Q Consensus 140 ~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~ 189 (379)
+.=++|-..=+-.++++++++|+++++|||.|..+|+|+++.++|++++.
T Consensus 89 k~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 89 KKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred hcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999888889999999999999999999999999999999999998864
No 45
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.87 E-value=0.0004 Score=67.53 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 122 LVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 122 ~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
+..|+..+..+.+|.++++++|++..+++...+|++++++++++++|++++.+++|.++.+.|+.+...
T Consensus 219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 345566778889999999999999999999999999999999999999999999999999999887644
No 46
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.83 E-value=0.001 Score=64.71 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHH-HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 124 LGAI-LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 124 ~Gl~-~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
.|+. .+....+|.++++++|++..+++..++|++++++++++++|++++.+++|.++.++|++.....
T Consensus 214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3443 4566678899999999999999999999999999999999999999999999999998887543
No 47
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.82 E-value=0.00033 Score=68.25 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=90.5
Q ss_pred HHhHhHHHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 58 AGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSV 137 (379)
Q Consensus 58 ~g~~~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~ 137 (379)
++-++..+..|.. + -+.+-.++.|..|..+-...++..+. ++ +|...+........|++.+..+.+|..
T Consensus 162 ~~y~~~~~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~Gi~~~ia~~~y~~ 230 (290)
T TIGR00776 162 IGYLVYVVVAKAF-G---VDGLSVLLPQAIGMVIGGIIFNLGHI--LA-----KPLKKYAILLNILPGLMWGIGNFFYLF 230 (290)
T ss_pred HHHHHHHHHHHHc-C---CCcceehhHHHHHHHHHHHHHHHHHh--cc-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566643 2 44567777787766665443333321 11 122233333455689999999999999
Q ss_pred hhc-cCChhHHHHHHhhhHHHHHHHHHHHhccccchHHH----HHHHHHHHHHHHhhc
Q 017017 138 GLL-YLSASTYSLICASQLAFNAVFSYFINSQKFTALIL----NSVVILSLSAALIAV 190 (379)
Q Consensus 138 gL~-ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i----~svvLl~~G~~ll~~ 190 (379)
+++ +.++++++++.+..|+.+++++++++||+.+++++ +|.++...|+.+++.
T Consensus 231 ~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 231 SAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999 99999999999999999999999999999999999 999999999988754
No 48
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.72 E-value=0.0011 Score=64.56 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 120 VYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 120 ~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
.....|+..+.-+.+|..+++++|++..+++...+|+++.++++++++|++++.++.|.++..+|+.++..+
T Consensus 215 ~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 215 LLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344456667788899999999999999999999999999999999999999999999999998888877543
No 49
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.67 E-value=0.00012 Score=70.56 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 118 ALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 118 ~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
+......++..+..+.+|.+++++.|++..+.+..++|+++.++++++++|++++.+++|.++.++|+.++
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 33334556667788889999999999999999999999999999999999999999999999999998763
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.62 E-value=0.0023 Score=62.07 Aligned_cols=64 Identities=5% Similarity=0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 128 LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 128 ~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
.+....+|.+++++++++..+++..++|++++++++++++|++++.+++|.++...|+.++...
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4677789999999999999999999999999999999999999999999999999999887543
No 51
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.56 E-value=0.036 Score=55.51 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccc-------cchHHHHHHHHHHHHHH
Q 017017 115 VTLALVYLVLGAILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQK-------FTALILNSVVILSLSAA 186 (379)
Q Consensus 115 ~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek-------~t~~~i~svvLl~~G~~ 186 (379)
.+.+..+++.|++.+..|..+..+.+|+-+|.. .+-.-+|++++.++..++++|= -...-+.|+++.++|++
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 366778899999999999999999999888866 6777899999999999998752 22457889999999999
Q ss_pred Hhhc----cCCCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 017017 187 LIAV----NEGSEGPSKVSKWKYILGFISTVGASAIYSLLL 223 (379)
Q Consensus 187 ll~~----~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l 223 (379)
+.+. .+..++.++.++.+..-|++.++.+.+.|+.|-
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 9876 333221111234556779999999999999987
No 52
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.49 E-value=0.0018 Score=55.55 Aligned_cols=129 Identities=15% Similarity=0.236 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHHHH--
Q 017017 209 FISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVM-- 286 (379)
Q Consensus 209 ~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y~l-- 286 (379)
.+.++.+|+++|+--..++...|.+ ..+....++ ..+...++..-++..|.|+ .+.|. +.+...|+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IR------tiVi~~~l~~v~~~~g~~~-~~~~~----~~k~~lflil 72 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIR------TIVILIFLLIVLLVTGNWQ-AGGEI----GPKSWLFLIL 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHH------HHHHHHHHHHHHHhcCcee-ccccc----CcceehhhhH
Confidence 4677888888888555544444432 111112222 2333334444455677764 43321 22222233
Q ss_pred HHHHHHHHHHHHHhh-hhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 017017 287 VIVWTAVSWQVCSVG-VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 354 (379)
Q Consensus 287 ~lv~~av~~q~~~~g-v~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~ 354 (379)
.=+.++++|++.+.. ..|-...+-.+-+ ..+.++.+++++++||++|..+++|.+++..|...
T Consensus 73 SGla~glswl~Yf~ALk~G~as~VvPldk-----~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 73 SGLAGGLSWLLYFRALKKGKASRVVPLDK-----TSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEccc-----ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 345667888887754 3343334333333 44567889999999999999999999999998754
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.48 E-value=0.0011 Score=56.59 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 125 GAILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
-+.++...++++.+++++|.++. ++......+.+++.++++++|++|+.++.++.+.++|++++-..+
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 35557777888999999999876 777889999999999999999999999999999999999885543
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.44 E-value=0.00081 Score=65.41 Aligned_cols=62 Identities=15% Similarity=-0.091 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 129 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 129 ~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
..-|.++..++++++++++++....+|++++++++++++|++|..++.|.++.++|+.+...
T Consensus 232 ~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 232 HFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 34446777899999999999999999999999999999999999999999999999988754
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.38 E-value=0.0078 Score=58.60 Aligned_cols=66 Identities=6% Similarity=-0.030 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 126 AILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
+-.+....+|..+++++++++.+++...+|++++++++++++|++++.+++|.++.++|+.+...+
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 334567788999999999999999999999999999999999999999999999999999876554
No 56
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.36 E-value=0.002 Score=52.96 Aligned_cols=66 Identities=11% Similarity=0.205 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 288 IVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 288 lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
++.+++.+.+...+. .+.+....+.+....++++.+++++++||+++..+++|+++++.|.....|
T Consensus 61 ~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~~ 126 (126)
T PF00892_consen 61 LLGTALAYLLYFYAL----KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIST 126 (126)
T ss_pred ccceehHHHHHHHHH----HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 333444444444442 233444455556666678899999999999999999999999999887653
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0019 Score=53.74 Aligned_cols=65 Identities=8% Similarity=0.057 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 126 AILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
+.+.....+.+.+++++|.+++ ++-.-...+-+++.++++++|++++.+++++.+..+|++.+-.
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3346666788889999999875 9999999999999999999999999999999999999998744
No 58
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.25 E-value=0.0023 Score=53.68 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 126 AILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
+.++...++.+.+++++|.++. ++-.....+.+++.++++++|++|+.++.++.+.+.|++.+
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4456677888899999999875 99999999999999999999999999999999999999886
No 59
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.24 E-value=0.013 Score=55.44 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchH--HH
Q 017017 208 GFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVS--YV 285 (379)
Q Consensus 208 G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~--y~ 285 (379)
|.++.+.|+++||......+.. .. ....++.++-.+++.++...-+...++++...+..+...+.+.. ..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~-------~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KP-------LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-cc-------CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence 8899999999999977775432 11 12455666667776655544333333322111000101011111 11
Q ss_pred HHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Q 017017 286 MVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYI 356 (379)
Q Consensus 286 l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~ 356 (379)
+.-+..++.+.....++ .+++...++++....+..+.++++++++|+++..+++++++.+.|...-.
T Consensus 75 ~~g~~~~~~~~~~~~a~----~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAV----NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 11111223333333442 23344445555555555889999999999999999999999999987653
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.19 E-value=0.0023 Score=55.25 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHH--HhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 126 AILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYF--INSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~l--il~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
+.++....+|.++++..|++...-+.+....++++.++. +++|++|+.+++|+++.++|+.++..+
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 344666688999999999999988888888888888885 899999999999999999999998543
No 61
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.19 E-value=0.0039 Score=52.40 Aligned_cols=66 Identities=9% Similarity=0.163 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 126 AILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
+.++....+++.+++.+|.++. ++-.....+.+++.++++++|++|+.++.++.+.++|++++-..
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3446666778899999999876 77788999999999999999999999999999999999998543
No 62
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.17 E-value=0.0035 Score=52.20 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 017017 126 AILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 189 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~ 189 (379)
+.++...++.+.+++.+|.++. ++-.....+.+++.+++++||++|+.++.++.+..+|++.+-
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3446677888899999999875 899999999999999999999999999999999999999874
No 63
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.99 E-value=0.015 Score=48.35 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccc
Q 017017 314 SNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 314 ~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~ 361 (379)
...+....+.++.+++.++|+|+++..++++.++++.|++.-.+++..
T Consensus 63 v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 63 VAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 334444555578999999999999999999999999999998886543
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.95 E-value=0.035 Score=52.23 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=62.0
Q ss_pred HHHHHHHHHH-HHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 120 VYLVLGAILA-GDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 120 ~~~~~Gl~~~-~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
.....|+... ..+.+|..+++..+++..+.+..+.+++++++++++++|++++.++.|.++.+.|..+....
T Consensus 216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555 47788889999999999999999999999999999999999999999999999998887543
No 65
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.76 E-value=0.0077 Score=60.30 Aligned_cols=66 Identities=18% Similarity=-0.004 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 017017 124 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 189 (379)
Q Consensus 124 ~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~ 189 (379)
.|+.....|.+-.++++++++.++++....+++++.++++++++|++|+.+++|.++.+.|+.+..
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 344444444333379999999999999999999999999999999999999999999999998753
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0083 Score=58.91 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCC
Q 017017 127 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGS 194 (379)
Q Consensus 127 ~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s 194 (379)
.++..+..=.-+..+-|++--+=+.+++++++++++..+++||++..-.+|.++..+|..++..+...
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 33444444446778889999999999999999999999999999999999999999999888766543
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.20 E-value=0.018 Score=46.65 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHH
Q 017017 127 ILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVI 180 (379)
Q Consensus 127 ~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvL 180 (379)
.++...++++.+++++|.++. .+......+.+.+.+.++++|++|+.++.++.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 457777899999999999987 888889999999999999999999999999875
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.19 E-value=0.11 Score=52.19 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=79.1
Q ss_pred CCCchhhHHHHHhchhhHhhhhhh----ccc--cccC-C--CCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 017017 74 GGNSKWLATLVQTAAFPILYIPLF----LLP--ASQE-V--SSS-SRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLS 143 (379)
Q Consensus 74 ~g~~~w~~t~vq~agfp~l~~~~~----~~~--~~~~-~--~~~-~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp 143 (379)
.|.+.|-..+.|.++.-+=....- ... ++++ + ++. .++|...|-.+.+++.|++...+|..|.+|-+.++
T Consensus 206 ~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g 285 (345)
T PRK13499 206 LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLG 285 (345)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466777888888774443221111 111 1111 0 111 12233456777889999999999999999888875
Q ss_pred hhHHH----HHHhhhHHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHHhhcc
Q 017017 144 ASTYS----LICASQLAFNAVFSYFINSQKFT------ALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 144 ~st~s----li~ssql~Ftalfs~lil~ek~t------~~~i~svvLl~~G~~ll~~~ 191 (379)
+++.. +-.|+.+++..+-+. ++||+=+ +..+.++++..+|+++++.+
T Consensus 286 ~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 286 AQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 55443 444899999999998 5998877 77788999999999888765
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.14 E-value=0.091 Score=51.28 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=51.4
Q ss_pred HHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 131 DNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 131 ~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
++..+ .-.+..++.+.+++.++.-+++.++++++.++++++.+|.|+++.+.|..+-..
T Consensus 239 ~~~i~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 239 QFFIF-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHH-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 33444 457779999999999999999999999999999999999999999999887544
No 70
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.88 E-value=0.04 Score=52.69 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 114 FVTLALVYLVLGAILAGDN-MLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 114 ~~~~~~~~~~~Gl~~~~~n-lly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
.+.++..+...|++...-- .+=..++..+|..+++++.+..|.+.++-++++++|++|+.||.+++....+++=.
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 4455555555565544332 45557899999999999999999999999999999999999999998888776643
No 71
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.79 E-value=0.39 Score=41.80 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=72.5
Q ss_pred CCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHH-HHHHh
Q 017017 74 GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTY-SLICA 152 (379)
Q Consensus 74 ~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~-sli~s 152 (379)
-|+-.+-+...+..|+..+.+..++...+ +.+...+.| ++.....++|.....-+. +....+.++.. .+...
T Consensus 27 ~gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p---~w~~lGG~lG~~~V~~~~---~~vp~lG~~~~~~l~~~ 99 (138)
T PF04657_consen 27 LGSPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP---WWAYLGGLLGVFFVLSNI---ILVPRLGAALTTILIVA 99 (138)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC---hHHhccHHHHHHHHHHHH---HHhhhhhHHHHHHHHHH
Confidence 45445555566777888876666655332 111111223 444456666666555544 56677777766 55667
Q ss_pred hhHHHHHHHHHH----HhccccchHHHHHHHHHHHHHHH
Q 017017 153 SQLAFNAVFSYF----INSQKFTALILNSVVILSLSAAL 187 (379)
Q Consensus 153 sql~Ftalfs~l----il~ek~t~~~i~svvLl~~G~~l 187 (379)
-|++..+++-.+ .-|+|+++.++.|++++.+|+.+
T Consensus 100 GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 100 GQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 799999999987 67999999999999999999864
No 72
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.64 E-value=0.028 Score=52.21 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAA 186 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ 186 (379)
++..+....+..+-++|.+..+.++..++..++++++++++++|+++..++.|+.+.+.|..
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 45566677777789999999999999999999999999999999999999999998887653
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.48 E-value=0.23 Score=48.14 Aligned_cols=93 Identities=17% Similarity=0.102 Sum_probs=67.9
Q ss_pred CCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhh
Q 017017 75 GNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQ 154 (379)
Q Consensus 75 g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssq 154 (379)
+-+.|-.-+-|..|.-+-.+-+.+.. +++.. ++. +++ -+..|++.+..|+.|..+.+..-++++=.+.|+.
T Consensus 161 ~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~---~k~-~~~----nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~ 231 (269)
T PF06800_consen 161 HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFF---EKK-SWK----NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLG 231 (269)
T ss_pred CCChhHhHHHHHHHHHHHHHHHhhcc-ccccc---ccc-hHH----hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHH
Confidence 34557788888888866433222221 11111 111 222 3556999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHH
Q 017017 155 LAFNAVFSYFINSQKFTALILN 176 (379)
Q Consensus 155 l~Ftalfs~lil~ek~t~~~i~ 176 (379)
++...+.+.+++||+=+++++.
T Consensus 232 vvIStlgGI~il~E~Kt~ke~~ 253 (269)
T PF06800_consen 232 VVISTLGGIFILKEKKTKKEMI 253 (269)
T ss_pred HHHHHhhhheEEEecCchhhHH
Confidence 9999999999999999988664
No 74
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.48 E-value=0.39 Score=46.77 Aligned_cols=135 Identities=13% Similarity=0.220 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhccccccccccchHHH
Q 017017 206 ILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYV 285 (379)
Q Consensus 206 ~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~~~~vgl~~~g~~~~l~~e~~~f~~g~~~y~ 285 (379)
.-|+++++.|.++||+ .-.++|-+ +.-+ ..|+..+-.+-+.++.++-+...+.|+++.. -.++.+....
T Consensus 6 ~~Gil~~l~Ay~lwG~----lp~y~kll-~~~~---~~eIlahRviwS~~~~l~ll~~~r~~~~~~~---~~~~p~~~~~ 74 (293)
T COG2962 6 RKGILLALLAYLLWGL----LPLYFKLL-EPLP---ATEILAHRVIWSFPFMLALLFLLRQWRELKQ---LLKQPKTLLM 74 (293)
T ss_pred cchhHHHHHHHHHHHH----HHHHHHHH-ccCC---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHhCcHHHHH
Confidence 4499999999999999 33334433 3222 3344444444444444444444555655532 1222222111
Q ss_pred H--HHHHHHHHHHHHHhhhh-hhhheehhhHHHHHHHHHHH-HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 286 M--VIVWTAVSWQVCSVGVV-GLIYVVSSLFSNVISTSSLA-ITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 286 l--~lv~~av~~q~~~~gv~-glv~~~ssl~~~vv~~~~~p-ls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
. +-.--..+|.++.+.++ |.+-. ++. .-..-| +..+++.++++|+++..|+++.+++..|+..-..
T Consensus 75 ~~l~a~li~~nW~lfiWAvn~g~~le-----aSL-GY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 75 LALTALLIGLNWWLFIWAVNNGHVLE-----ASL-GYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHHHHHHHhheecCCCchhH-----HHh-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 1 12222256666655532 12221 111 112336 5577999999999999999999999999887644
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.07 E-value=0.55 Score=40.07 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 321 SLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 321 ~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
....+.+.++++|||++|..|++|+.+++.|+..-
T Consensus 67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 44566789999999999999999999999999775
No 76
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.71 E-value=0.45 Score=47.59 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017017 62 AAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLY 141 (379)
Q Consensus 62 ~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~y 141 (379)
+++.++++.-.+ -++.=...++-.-|+.+..+...+..+ +. .+..+...+...+.+...+.+.....+....+.+
T Consensus 182 ~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~-~~---i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ 256 (334)
T PF06027_consen 182 VSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILER-SG---IESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRM 256 (334)
T ss_pred HHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheeh-hh---hhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566654433 344445677777788776655544322 11 1111223344444444555555555566778888
Q ss_pred CChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 142 LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 142 lp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
.++...++=..+..++++++..++.++++++..++|.++..+|.++....+
T Consensus 257 ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 257 SSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred CccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 999888888889999999999999999999999999999999998875544
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.56 E-value=0.083 Score=44.61 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHH-HhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 017017 126 AILAGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 187 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~sli-~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~l 187 (379)
++......+|.+.+...|.|...-+ +++..+||++.++++-+|..+++.+.|+++.++|+.+
T Consensus 49 ~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 49 LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4445555788899999999988666 5999999999999999999999999999999999865
No 78
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=93.86 E-value=0.57 Score=39.19 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
.....+.++++++|||++|..|++|+.+++.|+..-
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 444577889999999999999999999999998753
No 79
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=93.13 E-value=1.2 Score=37.21 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
+....+.+.++++|||+++..|++++.+++.|...-
T Consensus 66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999999999999999999998764
No 80
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=93.04 E-value=0.75 Score=45.25 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
+.+....++|.+++||+++...++|.++++.|......
T Consensus 85 ~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 85 LSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred hhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 44567788999999999999999999999999887654
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=92.92 E-value=0.0074 Score=57.33 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH-HHHhhhHHHHHHHHHHHhccccchHHH----HHHHHHHHHHHH
Q 017017 113 SFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYS-LICASQLAFNAVFSYFINSQKFTALIL----NSVVILSLSAAL 187 (379)
Q Consensus 113 ~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~s-li~ssql~Ftalfs~lil~ek~t~~~i----~svvLl~~G~~l 187 (379)
.+.+.++.++..|.+.+..|..-.-+.+++.+|... +-..+|++-+.+|+.+.++|=-+..++ .++++..+|+.+
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 466888899999999999998777888876666553 344689999999999999998888775 466667777766
Q ss_pred hhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 188 IAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQL 228 (379)
Q Consensus 188 l~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~ 228 (379)
-..+++.++ ++++.+++--|+...+.+++.|=.|.++.|.
T Consensus 134 Ts~~~~~nk-~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~ 173 (288)
T COG4975 134 TSKQDRNNK-EEENPSNLKKGIVILLISTLGYVGYVVLFQL 173 (288)
T ss_pred eeeeccccc-cccChHhhhhheeeeeeeccceeeeEeeecc
Confidence 555543222 1223445677998888899999888777543
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.04 E-value=3.4 Score=39.35 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=73.3
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCchhhHHHHHhchhhHhh--hhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 017017 55 FLIAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILY--IPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDN 132 (379)
Q Consensus 55 ~l~~g~~~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~n 132 (379)
..+++..+++..+|...+++ .+.|+.. +|.+-+-++. +..++....+..++.....++...+. .=+..+.+-
T Consensus 122 ~~~~S~~agVy~E~~lK~~~-~s~~~~N-~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~----~i~~~a~gG 195 (244)
T PF04142_consen 122 AAFLSGFAGVYFEKLLKRSN-VSLWIQN-MQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWI----VIFLQAIGG 195 (244)
T ss_pred HHHHHHHHHHHHHHHhcccc-hhHHHHH-HHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHH----HHHHHHHhh
Confidence 33444455555666665555 7888888 6665554443 22222111100111111112222221 123445566
Q ss_pred HHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHH
Q 017017 133 MLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVV 179 (379)
Q Consensus 133 lly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svv 179 (379)
++-+.-++|.|.-.=....+...+.|+++++++++.++|....+|.+
T Consensus 196 llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 196 LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 77778899999999999999999999999999999999998877654
No 83
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=91.98 E-value=1.3 Score=38.16 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=27.9
Q ss_pred HHHHHHHHH--HhCCcchhHHHHHHHHHHHHHHHHH
Q 017017 323 AITPVVSVI--VFHDKVNGVKVIAMLMAIWGFASYI 356 (379)
Q Consensus 323 pls~ilavl--~fge~ls~~k~ig~~lvl~G~~~y~ 356 (379)
.++.++++. +|||++|..+++|+++++.|+..-.
T Consensus 86 ~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 86 ALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345556663 8999999999999999999988854
No 84
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=91.52 E-value=1.9 Score=36.19 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 321 SLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 321 ~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
....+.+.++++|||++|+.+.+|+.+++.|+..-
T Consensus 67 G~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 67 GIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999999999998885
No 85
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.43 E-value=1.9 Score=43.08 Aligned_cols=168 Identities=15% Similarity=0.231 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHH--hcCCCchhhHHHHHhchhhHhhhhhhccccccCC--CCCCCCChhHHHHHHHHHHH
Q 017017 50 VVNIFFLIAGQAAAVILGRYYY--DQGGNSKWLATLVQTAAFPILYIPLFLLPASQEV--SSSSRYPSFVTLALVYLVLG 125 (379)
Q Consensus 50 ~~~~~~l~~g~~~~~ll~r~y~--~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~G 125 (379)
++-+++-.+|..++.. +|- .+--+=.|=+.|+--.-|.-++.|.......-|+ +-....|. ..+...++.|
T Consensus 6 i~Gii~h~iGg~~~~s---fy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~--~~l~~~~l~G 80 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGS---FYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPA--STLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHHhhh---hccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCCh--hHHHHHHHHH
Confidence 3444455566544432 332 2233345667777767777777776644332121 10011222 2344557789
Q ss_pred HHHHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHh-------ccccchHHHHHHHHHHHHHHHhhccC---CC
Q 017017 126 AILAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFIN-------SQKFTALILNSVVILSLSAALIAVNE---GS 194 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil-------~ek~t~~~i~svvLl~~G~~ll~~~~---~s 194 (379)
++.+..++.|-.+++|+-.|.- ++..-+..++-.+.--++. .++-.+..+.|+++..+|+++.+... +.
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999877643 4555555555555544443 33445688999999999999986432 12
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHH
Q 017017 195 EGPSKVSKWKYILGFISTVGASAIYSLL 222 (379)
Q Consensus 195 ~~~~~~~~~~~~~G~ll~L~Aa~~~al~ 222 (379)
+...+.++.+.-.|.++++.+.++++..
T Consensus 161 ~~~~~~~efn~~kGl~iAv~sGv~Sa~f 188 (344)
T PF06379_consen 161 ELGEEAKEFNFKKGLIIAVLSGVMSACF 188 (344)
T ss_pred hhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 2223334556678999999998888874
No 86
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=91.40 E-value=4.7 Score=33.80 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 354 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~ 354 (379)
+....+.+.++++|||++|+.|++++.+++.|+..
T Consensus 71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 33456688999999999999999999999999875
No 87
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.41 E-value=0.66 Score=44.17 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 124 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 124 ~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
+++...+.|++-..-+.+-.+-+-+++.++.-.||.+.|.+++..+++.+||+|-++.+.|..+-..
T Consensus 247 ~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 247 LAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 3666677776666777887888889999999999999999999999999999999999988665433
No 88
>PRK11431 multidrug efflux system protein; Provisional
Probab=89.79 E-value=2.8 Score=34.89 Aligned_cols=36 Identities=3% Similarity=0.252 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
+....+.+.++++|||++|+.+++++.+++.|+..-
T Consensus 65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 334566889999999999999999999999998764
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=88.52 E-value=2.4 Score=42.84 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 126 AILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 126 l~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
+......++|.+|.-.+++-+.++=.+.+++..+++-.++-++++|+..++|.+..++|-+++...+
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 3347788999999999999999999999999999999999999999999999999999988875543
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=86.06 E-value=0.35 Score=47.98 Aligned_cols=61 Identities=21% Similarity=0.084 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 127 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 127 ~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
..+.|..-| +-+..+++-|+++....+-++..+.++++++++.|+.++.|..++++|+.+-
T Consensus 245 ~f~~Nls~f-~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y 305 (316)
T KOG1441|consen 245 AFLLNLSAF-LVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY 305 (316)
T ss_pred HHHHHHHHH-HHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence 334455555 9999999999999999999999999999999999999999999999999885
No 91
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=86.01 E-value=5.8 Score=38.75 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 017017 133 MLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 189 (379)
Q Consensus 133 lly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~ 189 (379)
..|..+-. ++.-|.+++....=.+..++|.+.++.++|++.|+|..+.++|..+-+
T Consensus 258 gVy~L~te-~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 258 GVYILTTE-TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred hhhhhhce-ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 33433333 555666778888889999999999999999999999999999988764
No 92
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=81.26 E-value=0.39 Score=46.46 Aligned_cols=54 Identities=7% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC
Q 017017 322 LAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDDYRSRKSRYDGET 375 (379)
Q Consensus 322 ~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~~~k~~~~~~~~~~ 375 (379)
+.++.++|+++++|++|.....+..+.+.|+.....-.+.=....+.+++++.|
T Consensus 134 Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~ 187 (346)
T KOG4510|consen 134 PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE 187 (346)
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc
Confidence 347889999999999999999999999999998877666544444444444433
No 93
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=76.18 E-value=85 Score=31.61 Aligned_cols=80 Identities=18% Similarity=0.334 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hhHHHHHHhhhHHHHHHHHHHHhcc------ccchHHHHHHHH
Q 017017 111 YPSFVTLALVYLVLGAILAGDNMLYSVGLLYLS----ASTYSLICASQLAFNAVFSYFINSQ------KFTALILNSVVI 180 (379)
Q Consensus 111 ~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp----~st~sli~ssql~Ftalfs~lil~e------k~t~~~i~svvL 180 (379)
+|...+-.+.+++.|++.-.+...|.+|=+.++ .+...+..++.++|.-+-+.++ || |--+.-+.|+.+
T Consensus 252 ~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l-kEWKg~s~kt~~vl~~G~~v 330 (344)
T PF06379_consen 252 KPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL-KEWKGASKKTIRVLVLGIAV 330 (344)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCcccHHHHHHHHHH
Confidence 454446677889999999999999999988877 5567788888888887777654 43 444555777777
Q ss_pred HHHHHHHhhcc
Q 017017 181 LSLSAALIAVN 191 (379)
Q Consensus 181 l~~G~~ll~~~ 191 (379)
+..++.+++.+
T Consensus 331 lI~s~~ivG~G 341 (344)
T PF06379_consen 331 LILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHhcc
Confidence 77777777654
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=75.62 E-value=40 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHH
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMA 348 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lv 348 (379)
.....+.++++++|||++|..|++|+.++
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33456788999999999999999998874
No 95
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=75.38 E-value=58 Score=32.26 Aligned_cols=146 Identities=14% Similarity=0.266 Sum_probs=70.0
Q ss_pred ccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 017017 167 SQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQ 246 (379)
Q Consensus 167 ~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q 246 (379)
++.+.+.-+.+++++++|..+...--. ++.+.+|.++++.-=+...+ +=.. ...+.
T Consensus 129 g~eL~~~~~~Al~~alv~I~iYV~~RF--------e~~~a~aaI~al~hDvii~~----g~~s------------lfgiE 184 (305)
T COG0341 129 GKELARQGLLALLLALVGILIYVFFRF--------EWRFALAAILALLHDVIITL----GFFS------------LFGIE 184 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheee--------ehHHHHHHHHHHHHHHHHHH----HHHH------------Hhhee
Confidence 566777778888888888776533222 23344555554442222222 1000 11122
Q ss_pred HHHHHHHHHHHHHHHhhccc---cchhccccccccccchHHHHHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHH
Q 017017 247 IYTSFVATCICIVGLFASGE---WRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLA 323 (379)
Q Consensus 247 ~~~~lva~~~~~vgl~~~g~---~~~l~~e~~~f~~g~~~y~l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~p 323 (379)
+=...+|.++..+|.-++++ +..+.+.++..+..+.. -.+=.+++ ..++..+.+...-
T Consensus 185 ~~l~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~---~iin~si~----------------qTlsRti~Ts~tt 245 (305)
T COG0341 185 FNLATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLR---EIINTSIN----------------QTLTRTINTSVTT 245 (305)
T ss_pred ecHHHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHH---HHHHHHHH----------------HHHHHHHHHHHHH
Confidence 22356788888899877764 22343334444333221 12222232 2223344444444
Q ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHHHHHHH
Q 017017 324 ITPVVSVIVFH-DKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 324 ls~ilavl~fg-e~ls~~k~ig~~lvl~G~~~y 355 (379)
+.++++.++|| +.+.....+-++-++.|..+-
T Consensus 246 ll~~~~l~~fgg~~l~~fa~~llvGii~gtySS 278 (305)
T COG0341 246 LLVVVALLLFGGGSLKDFALALLVGIIAGTYSS 278 (305)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhH
Confidence 55577778787 344333333333334444433
No 96
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=74.51 E-value=1e+02 Score=31.13 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=82.3
Q ss_pred HHHHhHhHHHHHHHHHhc----CCCchhhHHHHHhchhhHhhhhhhccccc--cCCCCCCCCChhHHHHHHHHHHHHHHH
Q 017017 56 LIAGQAAAVILGRYYYDQ----GGNSKWLATLVQTAAFPILYIPLFLLPAS--QEVSSSSRYPSFVTLALVYLVLGAILA 129 (379)
Q Consensus 56 l~~g~~~~~ll~r~y~~~----~g~~~w~~t~vq~agfp~l~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~Gl~~~ 129 (379)
.++++|...-+...||++ ++.+.|+.. +|.+.|-+++-.+-..... +-.+...-.-+++..++. =+..+
T Consensus 187 avl~~c~~SgfAgvYfEkiLK~s~~s~wi~N-iqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~v----Vl~~a 261 (345)
T KOG2234|consen 187 AVLVACFLSGFAGVYFEKILKGSNVSLWIRN-IQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLV----VLLNA 261 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHH----HHHHh
Confidence 345556666666667773 456788887 7777777764333222111 101000011123222222 13334
Q ss_pred HHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 017017 130 GDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 190 (379)
Q Consensus 130 ~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~ 190 (379)
.+-++-++=.+|.|--.-..-.+...++|++.|+.+.+.++|..-.+|+.+.+.++.+-..
T Consensus 262 ~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~ 322 (345)
T KOG2234|consen 262 VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSL 322 (345)
T ss_pred ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhc
Confidence 4446666677788877777778889999999999999999999999999888888777653
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=74.37 E-value=1.5 Score=42.10 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHH----HHHHHHHHHHHHhh
Q 017017 116 TLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALIL----NSVVILSLSAALIA 189 (379)
Q Consensus 116 ~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i----~svvLl~~G~~ll~ 189 (379)
|....-...|++.+..|+.+..+-+..-++|.=-+.|+..+...+.+-+++|||=|++++ .|+++..+|+++++
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 334445677999999998887888888888888899999999999999999999999875 45566666666654
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.86 E-value=6.8 Score=37.72 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccc
Q 017017 339 GVKVIAMLMAIWGFASYIYQNY 360 (379)
Q Consensus 339 ~~k~ig~~lvl~G~~~y~y~~~ 360 (379)
..+.+|+++++.|...|..-+.
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fik~ 137 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFIKS 137 (254)
T ss_pred HHHHHHHHHHHHHHHheeeecC
Confidence 3579999999999999866443
No 99
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=70.44 E-value=71 Score=27.63 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=17.4
Q ss_pred CcchhHHHHHHHHHHHHHH
Q 017017 335 DKVNGVKVIAMLMAIWGFA 353 (379)
Q Consensus 335 e~ls~~k~ig~~lvl~G~~ 353 (379)
.++++.|++|.++++.|..
T Consensus 119 ~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 119 RPFSLRRILGLALMIAGVI 137 (138)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999875
No 100
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=68.62 E-value=10 Score=32.57 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 017017 310 SSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 358 (379)
Q Consensus 310 ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~ 358 (379)
++++......+.+|+..++...+.+..+......+++..+.|++.++.-
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~ 113 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLI 113 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666778877666666666666666666666666666666443
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.00 E-value=21 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 118 ALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 118 ~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
+.++.++|+ +.+...+ +...+.|+.|++++-..+..-|.+...++.++++++..+.|+.+.++|.++-+..
T Consensus 231 ~~lScv~gf--~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~ 301 (314)
T KOG1444|consen 231 MLLSCVMGF--GISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA 301 (314)
T ss_pred HHHHHHHHH--HHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence 334444444 3444444 8999999999999999999999999999999999999999999999999886544
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=57.24 E-value=2e+02 Score=28.62 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 017017 286 MVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLD 362 (379)
Q Consensus 286 l~lv~~av~~q~~~~gv~glv~~~ssl~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~ 362 (379)
..-+.+.++=+...-.+ +++|--+-.+.-.++..-+.+...++.+.+.++.+-+-..++-.|..++.+.+..|
T Consensus 88 ~is~tn~~s~~~~yeaL----KyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 88 LISFTNTLSSWCGYEAL----KYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHhhcchHHHHHHH----HhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 33444444433333332 45566666677778887788899999999999999999999999999998875444
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=55.59 E-value=44 Score=31.88 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 122 LVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 122 ~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
+..|+...+-.+.-.|.+.-++..+++.+.+++-.--++-+.+++.++.++..+.++.+...+.++-+.+
T Consensus 228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888999999999999999999999999999999999999999999988887776554
No 104
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.39 E-value=1.6e+02 Score=26.19 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=64.2
Q ss_pred chhhHHHHH-hchhhHhhhhhhccccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHhhh
Q 017017 77 SKWLATLVQ-TAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLS-ASTYSLICASQ 154 (379)
Q Consensus 77 ~~w~~t~vq-~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp-~st~sli~ssq 154 (379)
++..++++- ..|...+..-.++.+.+.+.+-..+.| ++.....++|..+...|.+ ..+.+- +.|-.++.+.|
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p---wW~~~GG~lGa~~vt~s~~---l~p~lGa~~t~~l~i~gQ 106 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP---WWAWIGGLLGAIFVTSSIL---LAPRLGAATTIALVIAGQ 106 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc---hHHHHccchhhhhhhhhHH---hccchhHHHHHHHHHHHH
Confidence 444444443 345555554444432221111111223 4444556777777777753 333333 34457888899
Q ss_pred HHHHHHHHHHHh----ccccchHHHHHHHHHHHHHHHh
Q 017017 155 LAFNAVFSYFIN----SQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 155 l~Ftalfs~lil----~ek~t~~~i~svvLl~~G~~ll 188 (379)
++..++.-.+=. ++++++.++.|++++.+|+.++
T Consensus 107 li~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 107 LIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 999999877655 4999999999999999995443
No 105
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=48.68 E-value=3e+02 Score=28.74 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHH-HHHHHHHHHhCCcchhHHHHHHHHHHHHHHH--HHhcccccc
Q 017017 319 TSSLA-ITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS--YIYQNYLDD 363 (379)
Q Consensus 319 ~~~~p-ls~ilavl~fge~ls~~k~ig~~lvl~G~~~--y~y~~~~~~ 363 (379)
.+.+| -.++.+.-.+|-++......|+++.+-.... ++|.++.++
T Consensus 152 ~lvPPtPgpla~a~~lg~dlG~~il~Gl~vaip~~~iag~~~~~~~~~ 199 (441)
T PF02447_consen 152 ALVPPTPGPLAAAGALGADLGLVILYGLIVAIPAMLIAGPLYGRFISK 199 (441)
T ss_pred hccCCCCcHHHHHHHhCCChhHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 34455 5567777778999999888887777766543 566555433
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=47.67 E-value=27 Score=29.33 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhccCChhHH-HHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 017017 128 LAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 187 (379)
Q Consensus 128 ~~~~nlly~~gL~ylp~st~-sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~l 187 (379)
.-....+|.+-++..|.+.. -+..++..+||++++..+--|...++.+.|.++..+|..+
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 34444677688888887665 4667789999999999886666777778888888887655
No 107
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=47.00 E-value=3e+02 Score=27.24 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=74.9
Q ss_pred HHHhHhHHHHHHHHHhcCCCchhhHHHHHhchhhHhhhhhhccccccCC-CCCCCCCh-hHHHHHHHHHHHHHHHHHHHH
Q 017017 57 IAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEV-SSSSRYPS-FVTLALVYLVLGAILAGDNML 134 (379)
Q Consensus 57 ~~g~~~~~ll~r~y~~~~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~-~~~~~~p~-~~~~~~~~~~~Gl~~~~~nll 134 (379)
+.-...+++=++-+..+++++-=|.----..|+|.++.|..++----+. ....+.|. +--...+-.+.| +++.+..+
T Consensus 200 l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VL 278 (367)
T KOG1582|consen 200 LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVL 278 (367)
T ss_pred HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHH
Confidence 3334455665666666655431121122356899998888765211110 00112232 212222212222 23333333
Q ss_pred HHHhhccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 135 YSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 135 y~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
--..+ --+.+...+.+..=..|.++|++++.+++|-...-|..+...|..+=...
T Consensus 279 alI~~--fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 279 ALIKL--FGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred HHHHH--hchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 21222 34556777778888999999999999999999999999999998775443
No 108
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=46.45 E-value=11 Score=35.08 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 318 STSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 318 ~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
+.+-...+-++|++++||++.+.|+++.++++.|+....|
T Consensus 86 ~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 86 FACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred HHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 3355677888999999999999999999999999877655
No 109
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=44.96 E-value=2.5e+02 Score=25.76 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=31.8
Q ss_pred CchhhHHHHHhchhhHhhhhhhccccccCCCCCCC---------CChhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017017 76 NSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSR---------YPSFVTLALVYLVLGAILAGDNMLYSVGLLY 141 (379)
Q Consensus 76 ~~~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~~~~~Gl~~~~~nlly~~gL~y 141 (379)
++.|....--..|.-++....+...+++++.+.++ .-...+.+..++..|+....+-..|.-+...
T Consensus 64 ~~~~~~~~~l~lGv~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~ 138 (214)
T PF11139_consen 64 PSPVVGWLQLVLGVLLLLLAVRVWRRRPRPDPPSRPPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAI 138 (214)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 45555554455666666666666544311110000 1113355555555555555555666555443
No 110
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=44.10 E-value=62 Score=32.30 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=20.6
Q ss_pred HhcCCCchhhH----HHHHhchhhHhhhhhhc
Q 017017 71 YDQGGNSKWLA----TLVQTAAFPILYIPLFL 98 (379)
Q Consensus 71 ~~~~g~~~w~~----t~vq~agfp~l~~~~~~ 98 (379)
.+.+|.|.|+. + +|.+++.++..++++
T Consensus 86 ~~v~Ga~rWi~lG~~s-iQPsE~~Ki~~il~l 116 (358)
T PF01098_consen 86 TEVNGARRWIRLGGFS-IQPSEFAKILLILFL 116 (358)
T ss_pred cccCCceEEEEeeeec-cchHHHHHHHHHHHH
Confidence 33578889973 4 699999998887775
No 111
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=43.26 E-value=1.5e+02 Score=24.81 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=33.4
Q ss_pred hhhhhhhheehhh--HHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q 017017 300 VGVVGLIYVVSSL--FSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWG 351 (379)
Q Consensus 300 ~gv~glv~~~ssl--~~~vv~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G 351 (379)
+..+.+++..-|+ ++.+--.+.+.+-..+|+++++|++++....|.++.+.+
T Consensus 49 VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~a 102 (108)
T PF04342_consen 49 VPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGA 102 (108)
T ss_pred CcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 3444444433222 243333334445577999999999999999998888654
No 112
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=43.13 E-value=41 Score=32.26 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=61.0
Q ss_pred HhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 151 CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSF 230 (379)
Q Consensus 151 ~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~ 230 (379)
+..+.++..+|-+.=-||| +-..+..+.+...|+.++......++ ..++...+|.+++...-..||-=+..+
T Consensus 76 ~~ie~~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~lG~vc~~~nI~~~~sPL~~m---- 147 (243)
T KOG1623|consen 76 LVIETVYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFHD---PERRVSVLGIVCAVFNISMFAAPLSVI---- 147 (243)
T ss_pred HHHHHHHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcCC---cceeeeeeehhhhhhhHHhhhccHHhh----
Confidence 4456777777777777777 44445555555555544322111111 112346889999999999998866554
Q ss_pred HHhhcccc-hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 017017 231 QKVLKRQS-FGVVLDMQIYTSFVATCICIVGLFAS 264 (379)
Q Consensus 231 kk~~~~~~-~~~vle~q~~~~lva~~~~~vgl~~~ 264 (379)
+|++|+.+ -....-+++..-+.+...++-|++.+
T Consensus 148 ~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~ 182 (243)
T KOG1623|consen 148 RKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIK 182 (243)
T ss_pred hhheecCceeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 45555322 11222235555556666667777764
No 113
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=39.29 E-value=1.6e+02 Score=29.29 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=18.0
Q ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHhcccc
Q 017017 331 IVFHDKVNGVKVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 331 l~fge~ls~~k~ig~~lvl~G~~~y~y~~~~ 361 (379)
+..+++++....+.+++.......|.++.++
T Consensus 118 ~~~~~~l~~~~g~~ll~~~~~yl~~~~~~~~ 148 (325)
T PRK10734 118 VLYDGQLSRSDGIFLLLLAVLWLLFIVKIAR 148 (325)
T ss_pred HHHCCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677766666666665555555554443
No 114
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.79 E-value=56 Score=28.94 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHHH
Q 017017 310 SSLFSNVISTSSLAIT 325 (379)
Q Consensus 310 ssl~~~vv~~~~~pls 325 (379)
++++++-...+.+|+.
T Consensus 72 ~~llkaa~lvYllPLl 87 (154)
T PRK10862 72 GSLLRSALLVYMTPLV 87 (154)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444555555666644
No 115
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.20 E-value=3.4e+02 Score=25.40 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 017017 242 VLDMQIYTSFVATCICIVGLFAS 264 (379)
Q Consensus 242 vle~q~~~~lva~~~~~vgl~~~ 264 (379)
+.+|--|+..+|.+...+|.++.
T Consensus 109 i~~~cg~~q~~a~l~milGc~ly 131 (207)
T KOG4026|consen 109 IFNMCGWMQGIAGLCMILGCALY 131 (207)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhc
Confidence 45666667777777777887663
No 116
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=37.14 E-value=91 Score=26.31 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q 017017 318 STSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFA 353 (379)
Q Consensus 318 ~~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~ 353 (379)
.++....+.+.++++.+|..+...++|+++++.|+.
T Consensus 75 Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 75 NSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred hHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 344445677788887777778888999999998864
No 117
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=36.75 E-value=69 Score=28.33 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=4.8
Q ss_pred hHHHHHHHHHHH
Q 017017 312 LFSNVISTSSLA 323 (379)
Q Consensus 312 l~~~vv~~~~~p 323 (379)
++.+-...+..|
T Consensus 74 lL~sA~LvYi~P 85 (150)
T COG3086 74 LLKSALLVYIFP 85 (150)
T ss_pred HHHHHHHHHHHH
Confidence 333333334444
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=36.54 E-value=43 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=23.1
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHH
Q 017017 159 AVFSYFINSQKFTALILNSVVILSLSAA 186 (379)
Q Consensus 159 alfs~lil~ek~t~~~i~svvLl~~G~~ 186 (379)
+.|+.+.+||++++.++.|-+.+..++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 5688899999999999999888765543
No 119
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=36.28 E-value=1.4e+02 Score=30.84 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=23.1
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 017017 159 AVFSYFINSQKFTALILNSVVILSLSAALIAVN 191 (379)
Q Consensus 159 alfs~lil~ek~t~~~i~svvLl~~G~~ll~~~ 191 (379)
.+.-+++-|=++..|.+..+++.++|..++++.
T Consensus 77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~ 109 (402)
T PF02487_consen 77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFS 109 (402)
T ss_pred HHhHhhhhhccchHHHHHHHHHHHHHHhheeec
Confidence 344556666777788888888888887777653
No 120
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.79 E-value=15 Score=36.07 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=77.2
Q ss_pred CCCchhhHHHHHhchhhHhhhhhhccccccCC-CCCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 017017 74 GGNSKWLATLVQTAAFPILYIPLFLLPASQEV-SSSSRYPS--FVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLI 150 (379)
Q Consensus 74 ~g~~~w~~t~vq~agfp~l~~~~~~~~~~~~~-~~~~~~p~--~~~~~~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli 150 (379)
-|+..|..|+....--.++++|+.+.-..-.. ..-+..|. .+.++.++.++|+ .-|+.-.+-++.+++-|+.+=
T Consensus 211 v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF---~mgyvTg~QIK~TSplThnIS 287 (347)
T KOG1442|consen 211 VGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGF---AMGYVTGWQIKVTSPLTHNIS 287 (347)
T ss_pred ccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHH---HhhheeeEEEEecccceeeec
Confidence 58999999999999999999999876332110 00012222 3333334444444 333433366778999999999
Q ss_pred HhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 151 CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 151 ~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
.+.+.+--.+++..+.+|.-+...|-|.++...|..+-
T Consensus 288 gTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~Y 325 (347)
T KOG1442|consen 288 GTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAY 325 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHH
Confidence 99999999999999999988888887777766666553
No 121
>PHA03049 IMV membrane protein; Provisional
Probab=35.19 E-value=47 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 017017 341 KVIAMLMAIWGFASY 355 (379)
Q Consensus 341 k~ig~~lvl~G~~~y 355 (379)
-.+.++.++.|..+|
T Consensus 6 ~l~iICVaIi~lIvY 20 (68)
T PHA03049 6 ILVIICVVIIGLIVY 20 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346677778888887
No 122
>PRK02237 hypothetical protein; Provisional
Probab=34.03 E-value=78 Score=26.59 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 155 LAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 155 l~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
++.+.+..+++-++|.+++-++|..+..+|+.++.+.+
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 34445667778899999999999999999999886654
No 123
>PRK02935 hypothetical protein; Provisional
Probab=33.59 E-value=54 Score=27.37 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=33.1
Q ss_pred ccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 017017 167 SQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLL 222 (379)
Q Consensus 167 ~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~ 222 (379)
.-|+|+.+-.|+.+.++|..++-.+-.-.++.-.-.--..+|+++.+++.+.|=-.
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvYFwi 61 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVYFWI 61 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888889999998877653321110000011122456888887777766553
No 124
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=32.54 E-value=5.6e+02 Score=27.07 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=13.2
Q ss_pred HHHHhHhHHHHHHHHHhcCCCc
Q 017017 56 LIAGQAAAVILGRYYYDQGGNS 77 (379)
Q Consensus 56 l~~g~~~~~ll~r~y~~~~g~~ 77 (379)
..+|+..+.......-|+-|+|
T Consensus 69 f~iG~~~Gs~~~~~la~~~GRK 90 (485)
T KOG0569|consen 69 FFIGGMIGSFSSGLLADRFGRK 90 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhcch
Confidence 3455566666666666665654
No 125
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=32.46 E-value=1.9e+02 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=19.8
Q ss_pred cCCCchhhHH---HHHhchhhHhhhhhhcc
Q 017017 73 QGGNSKWLAT---LVQTAAFPILYIPLFLL 99 (379)
Q Consensus 73 ~~g~~~w~~t---~vq~agfp~l~~~~~~~ 99 (379)
..|.++|+.= -+|-+||-++..++++.
T Consensus 103 ~~GAkrWi~ig~~siQPSEf~Ki~~il~lA 132 (381)
T COG0772 103 VNGAKRWIALGGLSIQPSEFAKIALILYLA 132 (381)
T ss_pred CCCcceeeeCCCcCCCchHHHHHHHHHHHH
Confidence 4677888654 37888888888777754
No 126
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=31.93 E-value=3.4e+02 Score=23.55 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=25.4
Q ss_pred ehhhHHHHHHHHHHHHH-HHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccccc
Q 017017 309 VSSLFSNVISTSSLAIT-PVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDD 363 (379)
Q Consensus 309 ~ssl~~~vv~~~~~pls-~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~~ 363 (379)
.++..+++.-...--+. =+++..+.++..+.....-+..++.|+.=|++++|.++
T Consensus 56 ~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~~ 111 (136)
T PF10710_consen 56 TGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLLR 111 (136)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544433222222 22444444434443322223335667777888777443
No 127
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.17 E-value=94 Score=26.27 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 017017 167 SQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSL 225 (379)
Q Consensus 167 ~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l 225 (379)
+.|+|+.+-.|+.+.++|.+++-.+-.-....-.-.--.++|+++++++++.|-...-+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45788889999999999987763321110000011123456877777777777664444
No 128
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=31.12 E-value=1.8e+02 Score=26.15 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 017017 176 NSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATC 255 (379)
Q Consensus 176 ~svvLl~~G~~ll~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~~~~~~~~vle~q~~~~lva~~ 255 (379)
.+++.++.|.=++.+..--+ +..+++|-.+|-.+.+.+-++++. +-..|--+++...-..-..+.+|.-+.|+.
T Consensus 93 lAVV~AIFGLElLmvSQvcE--d~~SrrKWamGs~LlLvsfvlSs~----GllsFviLL~~~vtl~GFTL~fWCeFtAsF 166 (184)
T PF15108_consen 93 LAVVVAIFGLELLMVSQVCE--DAHSRRKWAMGSVLLLVSFVLSSG----GLLSFVILLRNQVTLIGFTLMFWCEFTASF 166 (184)
T ss_pred HHHHHHHHhHHHHHHHHHHh--cchhhhhhhhhhHHHHHHHHHhcc----cHHHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 34555666655554332111 133456778899999988887766 333333333332212234467777777775
Q ss_pred HHH
Q 017017 256 ICI 258 (379)
Q Consensus 256 ~~~ 258 (379)
++.
T Consensus 167 LfF 169 (184)
T PF15108_consen 167 LFF 169 (184)
T ss_pred HHH
Confidence 544
No 129
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=30.43 E-value=1.8e+02 Score=24.55 Aligned_cols=48 Identities=17% Similarity=0.483 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHH-HHh---cCCCchhhHHHHHhchhhHhhhhhh
Q 017017 46 WVLVVVNIFFLIAGQAAAVILGRY-YYD---QGGNSKWLATLVQTAAFPILYIPLF 97 (379)
Q Consensus 46 w~~~~~~~~~l~~g~~~~~ll~r~-y~~---~~g~~~w~~t~vq~agfp~l~~~~~ 97 (379)
|-.+++..+++++|...-.+ +-+ +.. +++.+-|... ..|+-..+|..+
T Consensus 41 wK~I~la~~Lli~G~~li~~-g~l~~~~~i~~~~~~~~~ll---ilG~L~fIPG~Y 92 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIII-GLLLFFGHIDGDRDRGWALL---ILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCCCcccchHH---HHHHHHHhccHH
Confidence 65677767777777443333 323 222 2455566433 445555555555
No 130
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=28.77 E-value=68 Score=24.58 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 017017 341 KVIAMLMAIWGFASYI 356 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~ 356 (379)
-.++++.++.|..+|.
T Consensus 6 iLi~ICVaii~lIlY~ 21 (68)
T PF05961_consen 6 ILIIICVAIIGLILYG 21 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777788888873
No 131
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.44 E-value=11 Score=37.48 Aligned_cols=38 Identities=13% Similarity=0.370 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
+.++.++++|..+++|+++..-.+|.++++.|...-+.
T Consensus 99 lsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 99 LSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 55577899999999999999999999999988766544
No 132
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=28.27 E-value=8.8e+02 Score=27.14 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhcc
Q 017017 250 SFVATCICIVGLFASG 265 (379)
Q Consensus 250 ~lva~~~~~vgl~~~g 265 (379)
..++.++..+|.-+++
T Consensus 631 ~~iaall~iiGysvnd 646 (755)
T PRK13024 631 TFIAAILTIIGYSIND 646 (755)
T ss_pred HHHHHHHHHHhheeec
Confidence 3456666667765554
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.66 E-value=2.7e+02 Score=23.16 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 017017 320 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGF 352 (379)
Q Consensus 320 ~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~ 352 (379)
+.+.+-..++++.++|++.+....|.++++.|.
T Consensus 78 ItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav 110 (116)
T COG3169 78 ITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAV 110 (116)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 334455679999999999999998888776544
No 134
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=26.27 E-value=1.1e+02 Score=25.69 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 156 AFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 156 ~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
+.+.+..+.+-++|.+++-++|..+..+|+.++.+.+
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3445566777799999999999999999999987654
No 135
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=25.84 E-value=73 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.446 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 017017 341 KVIAMLMAIWGFASYIYQN 359 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~y~~ 359 (379)
=.+|+++.++|...++++.
T Consensus 6 Fl~~l~lliig~~~~v~~~ 24 (92)
T PF13038_consen 6 FLVGLILLIIGGFLFVFQS 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3577788888888877753
No 136
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=84 Score=23.57 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 017017 342 VIAMLMAIWGFASYIYQNYLD 362 (379)
Q Consensus 342 ~ig~~lvl~G~~~y~y~~~~~ 362 (379)
.+.+.+++.|...|.|++.++
T Consensus 15 t~~~~l~fiavi~~ayr~~~K 35 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHHHHHhcccch
Confidence 455667777777777765443
No 137
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.56 E-value=1.5e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 159 AVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 159 alfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
..||.+.+||++++..+.+-.+...|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999998887776666553
No 138
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.86 E-value=5.4e+02 Score=23.52 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=8.2
Q ss_pred HHHHHHHHHhccccc
Q 017017 157 FNAVFSYFINSQKFT 171 (379)
Q Consensus 157 Ftalfs~lil~ek~t 171 (379)
..++.....+|+|++
T Consensus 188 ~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 188 VIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344455556666665
No 139
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=24.60 E-value=1e+02 Score=28.50 Aligned_cols=31 Identities=3% Similarity=0.056 Sum_probs=21.3
Q ss_pred HhCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 017017 332 VFHDKVNGVKVIAMLMAIWGFASYIYQNYLD 362 (379)
Q Consensus 332 ~fge~ls~~k~ig~~lvl~G~~~y~y~~~~~ 362 (379)
+||=.++..++.|+++.+.-..-.+.++..+
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~ 94 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLFGSPSS 94 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 5788888889888887765555555554443
No 140
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.78 E-value=26 Score=34.37 Aligned_cols=91 Identities=7% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHH--HHHHhccccchHHHHHHHHHHHHHHHhhccCCCCCCCccchhhh
Q 017017 128 LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVF--SYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKY 205 (379)
Q Consensus 128 ~~~~nlly~~gL~ylp~st~sli~ssql~Ftalf--s~lil~ek~t~~~i~svvLl~~G~~ll~~~~~s~~~~~~~~~~~ 205 (379)
.+.-.++| .=.+-++-+..++++|..++...|. -++|-|+-+-+.-.+++++.++-..+..+= ..+.+-.
T Consensus 34 ~ail~w~~-iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~-------tLtGQ~L 105 (381)
T PF05297_consen 34 VAILVWFF-IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLW-------TLTGQTL 105 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH-------HhhccHH
Confidence 34444555 3344456666677777655544433 333334445666666666665543332211 1122335
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017017 206 ILGFISTVGASAIYSLLLSLM 226 (379)
Q Consensus 206 ~~G~ll~L~Aa~~~al~l~l~ 226 (379)
++|+++......+-=..++++
T Consensus 106 F~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 106 FVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778776554444333333333
No 141
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=22.69 E-value=3.7e+02 Score=26.93 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=45.8
Q ss_pred hccCChhHHHHHHhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 017017 139 LLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 188 (379)
Q Consensus 139 L~ylp~st~sli~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll 188 (379)
+..++.-|.++..--+-+-|.+++..+++++++...|.|+.+...|+..=
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999998774
No 142
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=22.54 E-value=97 Score=32.51 Aligned_cols=33 Identities=6% Similarity=-0.104 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccccccccccc
Q 017017 337 VNGVKVIAMLMAIWGFASYIYQNYLDDYRSRKS 369 (379)
Q Consensus 337 ls~~k~ig~~lvl~G~~~y~y~~~~~~~k~~~~ 369 (379)
++..|++++++++.|+..+++.++.+++|.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~~~~~~ 286 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGREAPGALR 286 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCccccC
Confidence 788899999999999988877665555544333
No 143
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=21.07 E-value=5.3e+02 Score=28.03 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 017017 342 VIAMLMAIWGFASY 355 (379)
Q Consensus 342 ~ig~~lvl~G~~~y 355 (379)
+++.++++..+.++
T Consensus 533 giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 533 GIACLVTLALFISI 546 (618)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555554
No 144
>PRK01844 hypothetical protein; Provisional
Probab=21.03 E-value=1.8e+02 Score=22.68 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHhc
Q 017017 46 WVLVVVNIFFLIAGQAAAVILGRYYYDQ 73 (379)
Q Consensus 46 w~~~~~~~~~l~~g~~~~~ll~r~y~~~ 73 (379)
|+.+.+-++.+++|...+-.+.|.|+.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555568889988888899988774
No 145
>COG4711 Predicted membrane protein [Function unknown]
Probab=20.74 E-value=7.1e+02 Score=23.40 Aligned_cols=72 Identities=11% Similarity=-0.037 Sum_probs=40.9
Q ss_pred HHHhccccchHHHHHHHHHHHHHHHhhccC--CCCCCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017017 163 YFINSQKFTALILNSVVILSLSAALIAVNE--GSEGPS-KVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVL 234 (379)
Q Consensus 163 ~lil~ek~t~~~i~svvLl~~G~~ll~~~~--~s~~~~-~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~~kk~~ 234 (379)
..++..|.|+.+.+++++.+++.+-..+.. .++.++ +...+-...=+.-++..+....+...++=..|.+..
T Consensus 114 vwllA~~isp~h~lal~~~~l~I~y~fvy~a~f~~~~~~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~~~~ 188 (217)
T COG4711 114 VWLLAYRISPYHSLALVLVVLVIMYSFVYTAKFGNDKKREEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFTRFD 188 (217)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccceeeeehHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456788999999999998888765432211 111111 111111122344556666666666666666777763
No 146
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=3.7e+02 Score=22.17 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhccccc-ccccccc
Q 017017 341 KVIAMLMAIWGFASYIYQNYLD-DYRSRKS 369 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~y~~~~~-~~k~~~~ 369 (379)
.+.+.+.+=.....|+|..+.. ++++|+.
T Consensus 70 aI~aVVavHvalglyiy~A~~~~sr~~ke~ 99 (102)
T KOG4783|consen 70 AICAVVAVHVALGLYIYRAIYAKSRTAKEA 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 3445555545566777766544 3333433
No 147
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.04 E-value=80 Score=27.06 Aligned_cols=8 Identities=25% Similarity=0.467 Sum_probs=4.2
Q ss_pred HHHHHhcc
Q 017017 352 FASYIYQN 359 (379)
Q Consensus 352 ~~~y~y~~ 359 (379)
++.|..++
T Consensus 83 li~y~irR 90 (122)
T PF01102_consen 83 LISYCIRR 90 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45665543
Done!