Query 017017
Match_columns 379
No_of_seqs 226 out of 467
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 9.5E-06 3.2E-10 66.8 9.9 68 125-192 37-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 6E-06 2E-10 70.8 7.6 68 125-192 37-105 (137)
3 2i68_A Protein EMRE; transmemb 97.0 0.0015 5E-08 55.8 7.3 40 319-358 65-104 (137)
4 3b5d_A Multidrug transporter E 95.0 0.22 7.6E-06 40.3 10.5 39 319-357 65-103 (110)
5 3l1l_A Arginine/agmatine antip 27.3 67 0.0023 30.7 5.2 21 341-361 410-430 (445)
6 3hd6_A Ammonium transporter RH 20.2 6.6E+02 0.023 25.2 15.1 175 41-229 87-275 (490)
7 2jo1_A Phospholemman; FXYD1, N 20.1 83 0.0028 23.3 3.1 21 341-361 21-41 (72)
8 2zxe_G FXYD10, phospholemman-l 14.8 1.2E+02 0.004 22.6 2.9 22 341-362 24-45 (74)
9 2jp3_A FXYD domain-containing 13.7 1.4E+02 0.0048 21.8 3.0 21 341-361 22-42 (67)
10 1gj7_A Urokinase-type plasmino 9.2 94 0.0032 18.4 0.6 10 6-16 11-20 (26)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.17 E-value=9.5e-06 Score=66.76 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHH-HhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli-~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
.+.++...++|..+++++|.++..-+ ..+.++++++.++++++|++|+.++.|+++..+|++++...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34556777888899999999999666 899999999999999999999999999999999999986643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=6e-06 Score=70.77 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHH-HhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhccC
Q 017017 125 GAILAGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 192 (379)
Q Consensus 125 Gl~~~~~nlly~~gL~ylp~st~sli-~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~G~~ll~~~~ 192 (379)
.+.++...++|..+++++|++....+ ..+.+++++++++++++|++|+.+++|+++.++|++++...+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34556777899999999999977666 899999999999999999999999999999999999987644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.02 E-value=0.0015 Score=55.82 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 017017 319 TSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 358 (379)
Q Consensus 319 ~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y~ 358 (379)
.+.+.++.++++++|||++++.+++|+++++.|+......
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3455577889999999999999999999999999887654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.98 E-value=0.22 Score=40.26 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 017017 319 TSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 357 (379)
Q Consensus 319 ~~~~pls~ilavl~fge~ls~~k~ig~~lvl~G~~~y~y 357 (379)
...+.++.++++++|||++|..+++|+.+++.|+.....
T Consensus 65 g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345557788999999999999999999999999887644
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=27.28 E-value=67 Score=30.71 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 017017 341 KVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~y~~~~ 361 (379)
...+.++.+.|+..|.+.+++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 355777788888888775544
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=20.23 E-value=6.6e+02 Score=25.17 Aligned_cols=175 Identities=12% Similarity=0.062 Sum_probs=94.7
Q ss_pred cchhHHHHHHHHHHHHHHHhHhHHHHHHHHHh-cCCCchhh-HHHHHhchhhHhhhhhhccccccCCCCCCCCChhHHHH
Q 017017 41 KSWQWWVLVVVNIFFLIAGQAAAVILGRYYYD-QGGNSKWL-ATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLA 118 (379)
Q Consensus 41 ~~~~~w~~~~~~~~~l~~g~~~~~ll~r~y~~-~~g~~~w~-~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 118 (379)
||+- |--+..|.++..++---+.|+..++.. ++|+-+-. ..+.| +-|......+..--. .+| -++ . ..+
T Consensus 87 kryg-~ssv~~n~l~~a~~~Qwa~l~~g~~~~~~~g~ip~~~~~~fq-~~Faa~t~~IvsGAv----aeR-~k~-~-~~l 157 (490)
T 3hd6_A 87 QRYG-FSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENLIN-ADFCVASVCVAFGAV----LGK-VSP-I-QLL 157 (490)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHHHHHHHHHTTCBTTTBEECCHHHHHH-HHHHHHHHHHHHHHH----TTS-SCH-H-HHH
T ss_pred HHhc-cHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHHHHH-HHHHHHHHHHHHHHH----Hhc-ccH-H-HHH
Confidence 5566 557888888888887788888888665 55543222 22233 333332221111000 111 112 1 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHhhhHHHHHHHHHHHhcccc-------chHHHHHHHHHHHHHHHh---
Q 017017 119 LVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKF-------TALILNSVVILSLSAALI--- 188 (379)
Q Consensus 119 ~~~~~~Gl~~~~~nlly~~gL~ylp~st~sli~ssql~Ftalfs~lil~ek~-------t~~~i~svvLl~~G~~ll--- 188 (379)
+..++..+++..+.++|-..+...|.+-.+++....-.+....++++ ++|- ....--++.+.++|..++
T Consensus 158 i~~~l~~~vY~~~~w~~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vL-G~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~G 236 (490)
T 3hd6_A 158 IMTFFQVTLFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRIL-YRRNLEQSKERQNSVYQSDLFAMIGTLFLWMY 236 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCTTCTTTTHHHHHHHHHHHHHHT-CCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHhccCceeecCceeeeHHHHHHHHHHHHhc-CCcccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 33344455666666666446777888888888888777777666655 4441 111236778888898877
Q ss_pred --hccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017017 189 --AVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLS 229 (379)
Q Consensus 189 --~~~~~s~~~~~~~~~~~~~G~ll~L~Aa~~~al~l~l~~~~ 229 (379)
++|+.+.. ++.....-++=|..|++..++-..+.+..
T Consensus 237 WfGFN~gs~~----~~~~~~~a~~NT~lAaAag~lt~~~~s~l 275 (490)
T 3hd6_A 237 WPSFNSAISY----HGDSQHRAAINTYCSLAACVLTSVAISSA 275 (490)
T ss_dssp HHHHTTTTCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhchhhhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45543221 01112234555666666666655554433
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.14 E-value=83 Score=23.27 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 017017 341 KVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~y~~~~ 361 (379)
.+++.++.+.|+++.+-++-+
T Consensus 21 LifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccc
Confidence 356667777777777666543
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=14.75 E-value=1.2e+02 Score=22.62 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 017017 341 KVIAMLMAIWGFASYIYQNYLD 362 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~y~~~~~ 362 (379)
.+++.++.+.|+.+.+-++-+.
T Consensus 24 LifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC---
T ss_pred chhHHHHHHHHHHHHHcCcccc
Confidence 3566777777777777665443
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=13.70 E-value=1.4e+02 Score=21.80 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 017017 341 KVIAMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 341 k~ig~~lvl~G~~~y~y~~~~ 361 (379)
.+++.++.+.|+++.+-++-+
T Consensus 22 LifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHHHHHHHHHHHHcCccc
Confidence 356667777777776665543
No 10
>1gj7_A Urokinase-type plasminogen activator; selectivity at S1, H2O displacement, UPA, TPA, Ser190/Ala190 protease, structure-based drug design; HET: CIT 132; 1.50A {Homo sapiens} SCOP: b.47.1.2 PDB: 1c5w_A* 1c5x_A* 1c5z_A* 1gi7_A* 1gi8_A* 1gi9_A* 1c5y_A* 1gj8_A* 1gj9_A* 1gja_A* 1gjb_A* 1gjc_A* 1gjd_A* 1lmw_A* 1o3p_A* 1o5a_A* 1o5b_A* 1o5c_A* 3ig6_A*
Probab=9.22 E-value=94 Score=18.44 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=0.0
Q ss_pred ccccccccccc
Q 017017 6 FSSCGYKSLNS 16 (379)
Q Consensus 6 ~~~~~~~~~~~ 16 (379)
|+ ||.+..+.
T Consensus 11 f~-CGq~~~~r 20 (26)
T 1gj7_A 11 FQ-CGQKTLRP 20 (26)
T ss_pred cc-cCCcCCCc
Done!