Query 017017
Match_columns 379
No_of_seqs 226 out of 467
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 07:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017017.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017017hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 10.4 51 0.0037 23.4 1.6 18 347-364 30-47 (91)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 8.6 1.7E+02 0.012 15.8 2.9 16 206-221 2-17 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 5.8 6E+02 0.044 19.8 10.5 43 311-353 80-125 (222)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 4.3 3.7E+02 0.027 15.5 3.8 25 199-223 11-35 (37)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 4.2 1.4E+02 0.0099 21.1 1.1 17 345-361 39-55 (100)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 3.7 3.6E+02 0.026 15.3 2.5 18 344-361 11-28 (34)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 3.7 2.4E+02 0.017 22.1 2.5 30 326-355 80-109 (199)
8 d1nkzb_ f.3.1.1 (B:) Light-har 3.5 4.8E+02 0.035 15.4 3.3 24 337-360 16-39 (41)
9 d1ijdb_ f.3.1.1 (B:) Light-har 3.2 5.1E+02 0.037 15.2 3.1 23 337-359 17-39 (40)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.9 1.1E+03 0.083 18.7 7.9 34 150-183 30-63 (248)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.38 E-value=51 Score=23.38 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhccccccc
Q 017017 347 MAIWGFASYIYQNYLDDY 364 (379)
Q Consensus 347 lvl~G~~~y~y~~~~~~~ 364 (379)
+.+.|...|..-+|++.+
T Consensus 30 v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 30 IPAILMAVGFAWKYRASN 47 (91)
T ss_dssp THHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHhhheeeeccC
Confidence 344556666666666443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.55 E-value=1.7e+02 Score=15.76 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 017017 206 ILGFISTVGASAIYSL 221 (379)
Q Consensus 206 ~~G~ll~L~Aa~~~al 221 (379)
.+|.+.+-.|..+|+.
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4688888888888887
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.82 E-value=6e+02 Score=19.79 Aligned_cols=43 Identities=9% Similarity=-0.106 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHH---HHHHHHHhCCcchhHHHHHHHHHHHHHH
Q 017017 311 SLFSNVISTSSLAIT---PVVSVIVFHDKVNGVKVIAMLMAIWGFA 353 (379)
Q Consensus 311 sl~~~vv~~~~~pls---~ilavl~fge~ls~~k~ig~~lvl~G~~ 353 (379)
|....++....+|++ .+.+..+.+.+++....+|+++.+....
T Consensus 80 S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 80 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 444555555555655 4466667788999888777777554333
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.29 E-value=3.7e+02 Score=15.46 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=19.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHH
Q 017017 199 KVSKWKYILGFISTVGASAIYSLLL 223 (379)
Q Consensus 199 ~~~~~~~~~G~ll~L~Aa~~~al~l 223 (379)
+..+....+|.+++..-+++|+-|.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHh
Confidence 4445566789999999888888764
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.20 E-value=1.4e+02 Score=21.13 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcccc
Q 017017 345 MLMAIWGFASYIYQNYL 361 (379)
Q Consensus 345 ~~lvl~G~~~y~y~~~~ 361 (379)
+.+.+.|...|..-+|+
T Consensus 39 I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 39 ITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33445555666554444
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.71 E-value=3.6e+02 Score=15.32 Aligned_cols=18 Identities=22% Similarity=0.240 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhcccc
Q 017017 344 AMLMAIWGFASYIYQNYL 361 (379)
Q Consensus 344 g~~lvl~G~~~y~y~~~~ 361 (379)
+...++.-..+++|+.|.
T Consensus 11 ~G~~vi~~vG~FfYGsYs 28 (34)
T d2axtj1 11 AGMGVIVIVGLFFYGAYA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred hhhhhHhheeeeeeeeec
Confidence 334444445667777664
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.71 E-value=2.4e+02 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=19.6
Q ss_pred HHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 017017 326 PVVSVIVFHDKVNGVKVIAMLMAIWGFASY 355 (379)
Q Consensus 326 ~ilavl~fge~ls~~k~ig~~lvl~G~~~y 355 (379)
......++|-+++....++..+.+....-|
T Consensus 80 ~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 80 TFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 334455677888887777777666655555
No 8
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.48 E-value=4.8e+02 Score=15.42 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhccc
Q 017017 337 VNGVKVIAMLMAIWGFASYIYQNY 360 (379)
Q Consensus 337 ls~~k~ig~~lvl~G~~~y~y~~~ 360 (379)
+++.++++.+.++.=+..|.|.+.
T Consensus 16 IdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 16 IDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSST
T ss_pred hcchHHHHHHHHHHHHHHHHhCcc
Confidence 567778888888888888888654
No 9
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.16 E-value=5.1e+02 Score=15.19 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc
Q 017017 337 VNGVKVIAMLMAIWGFASYIYQN 359 (379)
Q Consensus 337 ls~~k~ig~~lvl~G~~~y~y~~ 359 (379)
+++.++++.+.++.=+..|.|.+
T Consensus 17 IdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 17 IDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hcchhHHHHHHHHHHHHHHhcCC
Confidence 46677777777777777777653
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.87 E-value=1.1e+03 Score=18.72 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=22.4
Q ss_pred HHhhhHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 017017 150 ICASQLAFNAVFSYFINSQKFTALILNSVVILSL 183 (379)
Q Consensus 150 i~ssql~Ftalfs~lil~ek~t~~~i~svvLl~~ 183 (379)
+...-++.+++..|+++.+|.-+++.+-=.++.+
T Consensus 30 ~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l 63 (248)
T d2r6gf1 30 FAITTLILSSAGLYIFANRKAYAWRYVYPGMAGM 63 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHheEEEEEccCccceehhhhHHHHH
Confidence 3445566777777888888888887764433333
Done!