Query 017018
Match_columns 379
No_of_seqs 147 out of 174
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 3E-130 7E-135 940.8 26.9 293 80-372 1-294 (294)
2 cd02510 pp-GalNAc-T pp-GalNAc- 94.5 0.72 1.6E-05 43.6 12.5 136 194-331 82-227 (299)
3 cd04186 GT_2_like_c Subfamily 94.4 0.096 2.1E-06 43.0 5.5 91 195-329 74-165 (166)
4 TIGR01556 rhamnosyltran L-rham 94.3 0.22 4.8E-06 46.4 8.4 128 194-330 72-202 (281)
5 cd02526 GT2_RfbF_like RfbF is 93.7 0.25 5.3E-06 43.9 7.1 123 195-329 75-204 (237)
6 cd04185 GT_2_like_b Subfamily 93.4 0.27 6E-06 42.8 6.8 100 194-333 78-177 (202)
7 PF13641 Glyco_tranf_2_3: Glyc 91.6 0.54 1.2E-05 41.6 6.4 192 123-329 4-210 (228)
8 cd02520 Glucosylceramide_synth 90.5 0.35 7.5E-06 42.6 4.1 92 194-329 85-176 (196)
9 cd02525 Succinoglycan_BP_ExoA 88.6 0.95 2.1E-05 40.0 5.4 125 194-329 80-208 (249)
10 cd04195 GT2_AmsE_like GT2_AmsE 87.8 0.32 6.9E-06 42.1 1.8 116 194-326 79-198 (201)
11 cd06433 GT_2_WfgS_like WfgS an 85.6 0.84 1.8E-05 38.5 3.2 36 194-229 74-110 (202)
12 COG1216 Predicted glycosyltran 83.4 6.1 0.00013 38.0 8.4 136 196-334 85-225 (305)
13 PF13632 Glyco_trans_2_3: Glyc 79.9 11 0.00024 32.8 8.1 122 198-333 1-127 (193)
14 cd06437 CESA_CaSu_A2 Cellulose 79.9 1.2 2.5E-05 40.1 2.0 131 194-333 86-217 (232)
15 cd06442 DPM1_like DPM1_like re 78.0 1 2.2E-05 39.5 1.1 35 194-228 77-111 (224)
16 PLN02726 dolichyl-phosphate be 74.5 4.3 9.3E-05 37.2 4.2 195 119-329 8-218 (243)
17 PF10111 Glyco_tranf_2_2: Glyc 72.2 5 0.00011 38.3 4.2 94 124-218 2-111 (281)
18 cd04196 GT_2_like_d Subfamily 71.8 1.9 4.1E-05 37.2 1.1 46 280-329 158-203 (214)
19 cd06913 beta3GnTL1_like Beta 1 69.5 4.4 9.4E-05 36.1 2.9 128 194-330 83-210 (219)
20 cd04188 DPG_synthase DPG_synth 66.7 2.1 4.6E-05 37.8 0.4 34 194-227 81-114 (211)
21 PF00535 Glycos_transf_2: Glyc 66.3 4.4 9.6E-05 32.7 2.1 38 194-231 77-114 (169)
22 cd06434 GT2_HAS Hyaluronan syn 65.4 3.3 7.3E-05 36.7 1.3 85 146-234 28-116 (235)
23 cd06439 CESA_like_1 CESA_like_ 64.7 5.4 0.00012 35.9 2.6 40 194-233 108-147 (251)
24 cd06421 CESA_CelA_like CESA_Ce 64.0 5.6 0.00012 35.0 2.5 125 194-330 83-212 (234)
25 PF13506 Glyco_transf_21: Glyc 61.9 6.2 0.00013 35.6 2.4 124 194-332 30-156 (175)
26 PTZ00260 dolichyl-phosphate be 59.8 6.9 0.00015 38.8 2.6 186 121-324 71-287 (333)
27 cd06435 CESA_NdvC_like NdvC_li 57.1 5.8 0.00013 35.4 1.4 123 195-326 84-206 (236)
28 cd06420 GT2_Chondriotin_Pol_N 54.8 33 0.00071 29.0 5.5 27 194-220 78-104 (182)
29 PF03672 UPF0154: Uncharacteri 54.2 4.7 0.0001 32.3 0.3 17 19-35 3-19 (64)
30 PF02434 Fringe: Fringe-like; 52.9 7.6 0.00017 37.3 1.5 189 122-335 9-213 (252)
31 cd02522 GT_2_like_a GT_2_like_ 49.5 29 0.00062 30.4 4.5 84 145-233 27-110 (221)
32 PF09258 Glyco_transf_64: Glyc 44.1 24 0.00052 34.0 3.4 94 129-223 8-103 (247)
33 cd00761 Glyco_tranf_GTA_type G 43.7 19 0.00041 28.0 2.2 22 195-216 77-98 (156)
34 PRK10714 undecaprenyl phosphat 43.2 61 0.0013 32.1 6.1 101 120-227 6-121 (325)
35 PF01762 Galactosyl_T: Galacto 42.8 1E+02 0.0022 27.7 7.1 176 105-313 6-186 (195)
36 cd06423 CESA_like CESA_like is 42.7 15 0.00031 29.4 1.5 38 195-232 78-116 (180)
37 PRK01844 hypothetical protein; 42.2 9.4 0.0002 31.3 0.3 15 20-34 11-25 (72)
38 cd04184 GT2_RfbC_Mx_like Myxoc 40.5 22 0.00047 30.7 2.3 37 194-230 82-119 (202)
39 PRK14583 hmsR N-glycosyltransf 40.0 78 0.0017 32.4 6.5 98 120-222 75-182 (444)
40 cd04192 GT_2_like_e Subfamily 39.4 23 0.00049 30.9 2.3 37 194-230 81-117 (229)
41 PF14654 Epiglycanin_C: Mucin, 35.3 14 0.00031 32.1 0.4 30 10-39 8-42 (106)
42 cd06427 CESA_like_2 CESA_like_ 35.2 36 0.00077 31.0 2.9 38 194-231 83-122 (241)
43 PF09828 Chrome_Resist: Chroma 35.0 25 0.00054 31.9 1.8 49 182-236 16-82 (135)
44 PRK11677 hypothetical protein; 34.4 15 0.00033 33.1 0.4 19 19-37 6-24 (134)
45 TIGR03469 HonB hopene-associat 32.6 42 0.00091 33.6 3.2 33 196-228 134-166 (384)
46 PF06295 DUF1043: Protein of u 32.2 16 0.00036 32.0 0.2 19 19-37 2-20 (128)
47 PRK00523 hypothetical protein; 32.1 17 0.00037 29.9 0.3 15 20-34 12-26 (72)
48 PF12996 DUF3880: DUF based on 27.4 30 0.00066 27.5 1.0 16 190-205 13-28 (79)
49 PF12621 DUF3779: Phosphate me 25.8 39 0.00085 28.2 1.4 44 185-232 34-77 (95)
50 cd00505 Glyco_transf_8 Members 25.3 1.1E+02 0.0023 28.7 4.3 87 121-219 31-118 (246)
51 PF12072 DUF3552: Domain of un 24.5 21 0.00045 33.4 -0.6 18 20-37 3-20 (201)
52 KOG3708 Uncharacterized conser 23.5 36 0.00078 37.4 0.9 67 149-218 53-120 (681)
53 PRK05454 glucosyltransferase M 23.3 1.5E+02 0.0033 33.1 5.6 108 119-229 123-255 (691)
54 PRK10073 putative glycosyl tra 23.2 72 0.0016 31.5 2.9 105 120-229 6-119 (328)
55 cd06438 EpsO_like EpsO protein 23.0 81 0.0018 27.3 2.9 29 194-222 80-108 (183)
56 TIGR03472 HpnI hopanoid biosyn 21.6 61 0.0013 32.3 2.1 125 194-329 125-252 (373)
57 KOG4179 Lysyl hydrolase/glycos 21.5 52 0.0011 35.4 1.6 62 173-239 77-150 (568)
58 PRK11204 N-glycosyltransferase 21.2 79 0.0017 31.5 2.8 192 120-329 54-260 (420)
59 KOG2246 Galactosyltransferases 21.2 68 0.0015 33.1 2.4 106 182-323 155-268 (364)
60 PLN03133 beta-1,3-galactosyltr 21.0 1.5E+02 0.0032 33.2 4.9 176 98-312 393-580 (636)
61 cd04190 Chitin_synth_C C-termi 20.5 1.1E+02 0.0024 28.2 3.4 30 193-222 71-100 (244)
62 PLN02867 Probable galacturonos 20.4 43 0.00094 36.5 0.8 33 186-219 335-367 (535)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=3.4e-130 Score=940.78 Aligned_cols=293 Identities=65% Similarity=1.185 Sum_probs=287.2
Q ss_pred ccccCCCCCCCCCCCCccccCCccccccccCCCCcCcCCCCceEEEEEeccccccchhHHhhccccCcEEEEEEeCCCCC
Q 017018 80 IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTS 159 (379)
Q Consensus 80 ~~~~~~p~g~e~lP~giv~~~sd~~l~~lwg~p~~~~~~~~kyLv~~~VG~~qk~~Vd~~v~kf~~~F~v~LfhYDG~~~ 159 (379)
||++++|+|+|+||+|||+++|||+||||||.|.+|...++|||||||||+|||++||++|+||++|||||||||||+++
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 68999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccccccCccEEEEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC-c
Q 017018 160 QWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-L 238 (379)
Q Consensus 160 ~w~d~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~-i 238 (379)
+|+|||||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred ceeeeeecCCcceeeeeccCCCCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeE
Q 017018 239 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI 318 (379)
Q Consensus 239 sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~ki 318 (379)
||++|+|++++++|+.+.+++++|+++|+||||||||||||||||+|||||||||||||+|||||||+|++|++.+++||
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~ki 240 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKI 240 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccE
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEeeeeEEeeccCCCCCCCCCCCCCCchHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017018 319 GVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAY 372 (379)
Q Consensus 319 GVVDa~~VvH~g~PtLg~~g~~~~~~~~~~~vR~r~~~E~~~F~~R~~~A~k~~ 372 (379)
||||||||+|+|+||||+||.++.+.++|.+||+||++||++|++||++|+|+|
T Consensus 241 GVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~ 294 (294)
T PF05212_consen 241 GVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY 294 (294)
T ss_pred EEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.55 E-value=0.72 Score=43.63 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=75.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC--cceeeeeec-C---CcceeeeeccC--CCCCCC-
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG--LTWQMTKRR-G---DQEVHKVTEEK--PGWCSD- 264 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~--ish~iT~R~-~---~~~vHr~~~~~--~g~C~~- 264 (379)
+..|||++.|+|..++..-++++++.+....-.+.-|.+..-.. ..+.-.... . ...++..-... ...+..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998887777787654321 111111100 0 00111100000 000000
Q ss_pred CCCCCccceEEEecccccHHHHHHhhhhhcCCCcccch-hhHhhhHhhcCCCCeEEEEeeeeEEeecc
Q 017018 265 PHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG-LDFALRRCVEPAHEKIGVVDSQWIIHQVI 331 (379)
Q Consensus 265 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG-LDf~~~~c~~~~~~kiGVVDa~~VvH~g~ 331 (379)
+..+..+.++-..+=+++|++|..+=.+ .... ..|| =|.-+..-+.-...+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~~-~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY-DEGM-DIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC-CCcc-cccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 1111122233233447999999887443 3333 3565 34443212222356888999889999765
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.40 E-value=0.096 Score=43.01 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=61.2
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018 195 AYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 273 (379)
Q Consensus 195 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 273 (379)
.+|||++.|+|...+...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999888888888754433 23332222
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
+=..+.+|++++|+.+-.+ .... ..+|-|..+...+.....++..+....+.|.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 VSGAFLLVRREVFEEVGGF-DEDF-FLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred CceeeEeeeHHHHHHcCCC-Chhh-hccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 0012347899999876332 2222 2367787766555445689999999999996
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.32 E-value=0.22 Score=46.43 Aligned_cols=128 Identities=9% Similarity=0.031 Sum_probs=72.6
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCCc-cCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPGL-EPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 270 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPAL-d~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 270 (379)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+.....+..... +... +... ..+.+.+.-
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----~~~~~~~~~ 144 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD-GLLL-RQIS-----LDGLTTPQK 144 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec-ccce-eeec-----ccccCCcee
Confidence 379999999999999988899999988876 567777764 22221112221111 1100 1000 000000000
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeec
Q 017018 271 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 330 (379)
Q Consensus 271 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 330 (379)
+.++=.-..+++|++++.+=. +..++- .++.|.-|..=+.....++.++....+.|..
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~-fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGM-MDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCC-ccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEec
Confidence 111100123789999988733 334442 4567766633333346789999999999973
No 5
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.66 E-value=0.25 Score=43.93 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=62.8
Q ss_pred CccEEEEecccccCCCCChHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCcceeeeeccCCCCCCCCCCCC
Q 017018 195 AYEYIFIWDEDLGVEHFNGDKYM---ELVK-KHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPP 269 (379)
Q Consensus 195 ~YDYIflwDDDL~vd~f~i~ry~---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vHr~~~~~~g~C~~~~~pp 269 (379)
.||||++.|+|..++...+++++ +..+ ...+.+..|....... ..... .+.....+. ... +. ..+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~----~~---~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG-VRKSGYKLR--IQK----EG---EEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc-eeccCccce--ecc----cc---cCC
Confidence 58999999999999988888885 2222 2234455554432221 11110 011110000 000 00 000
Q ss_pred ccceEEEe--cccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 270 CAAFVEIM--APVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 270 cT~FVEiM--APVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
+...-.++ +-+|+|++++.+=.+ ..+. ...|-|+.|..-+.-...++..+....|.|.
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGF-DEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCC-CHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 11111111 126899999887444 2232 1335566655444445678988888888886
No 6
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.41 E-value=0.27 Score=42.77 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=66.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 273 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 273 (379)
+.+||+++.|+|..++.-.++++.+.++..++.+..|....... ++.+
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~- 125 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVG- 125 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEE-
Confidence 57999999999999998888888888775555555443322110 1112
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018 274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 333 (379)
Q Consensus 274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 333 (379)
-+++|++|+.+ .... +.-..||=|.-+..-+.....++ .+.+..+.|....+
T Consensus 126 -----~~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 126 -----VLISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred -----EEEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 24889999766 3322 33347887876654444456788 99999999995444
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.63 E-value=0.54 Score=41.64 Aligned_cols=192 Identities=16% Similarity=0.137 Sum_probs=88.8
Q ss_pred EEEEEeccccccchhHHhhccc----cCcEEEEEEeCCCCCcccc-c-----cccCccEEEEEe---cc--ccccccccc
Q 017018 123 LLTITVGLNQKKNIDRMVKKFS----EDFQIMLFHYDGQTSQWDE-F-----EWSKSAIHVSIR---RQ--TKWWYAKRF 187 (379)
Q Consensus 123 Lv~~~VG~~qk~~Vd~~v~kf~----~~F~v~LfhYDG~~~~w~d-~-----~Ws~~aihv~~~---kq--tKWw~akRf 187 (379)
.|.+++=.. ...+...++-.. .++.|+++. |+..++=.+ + .+...-+++... .+ +|-.-++..
T Consensus 4 ~Vvip~~~~-~~~l~~~l~sl~~~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~ 81 (228)
T PF13641_consen 4 SVVIPAYNE-DDVLRRCLESLLAQDYPRLEVVVVD-DGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEA 81 (228)
T ss_dssp EEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEE-E-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHH
T ss_pred EEEEEecCC-HHHHHHHHHHHHcCCCCCeEEEEEE-CCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHH
Confidence 344444222 234555555432 568888766 444433211 1 233323444332 22 243333333
Q ss_pred cCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCC
Q 017018 188 LHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHL 267 (379)
Q Consensus 188 LHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ 267 (379)
+. ...+|||++.|+|..++...+.++++.+...+..+.|+....... ...++.-......+.......+.-. -..
T Consensus 82 ~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (228)
T PF13641_consen 82 LA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRSGRRA-LGV 156 (228)
T ss_dssp HH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-TT-B-----
T ss_pred HH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhhhhcc-cce
Confidence 32 145999999999999999999999999977888888866644321 1112211111000000000000000 001
Q ss_pred CCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 268 PPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 268 ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
.+|+ .-+=+|+|++++.+-.+ +. ..-|=|+.+..-+.....++..+....|.|.
T Consensus 157 ~~~~----G~~~~~rr~~~~~~g~f--d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 157 AFLS----GSGMLFRRSALEEVGGF--DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHE 210 (228)
T ss_dssp S-B------TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE-
T ss_pred eecc----CcEEEEEHHHHHHhCCC--CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEe
Confidence 1111 12337999999888554 22 2445787776555556789999988888887
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.51 E-value=0.35 Score=42.64 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=56.8
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 273 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 273 (379)
+.+|||++.|.|..++...+.++++.....+..+.++. | +++
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~g- 126 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AFG- 126 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------ccC-
Confidence 57999999999998887777777765432222222211 0 011
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
.+-+|+|++|+.+=.+ .....-++=|+.+..-+.....++..++.. ++|+
T Consensus 127 ---~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 127 ---KSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQP 176 (196)
T ss_pred ---ceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHHcCCeEEEcchh-eecc
Confidence 2347899999877433 111123466888776666567889888775 5554
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.60 E-value=0.95 Score=40.03 Aligned_cols=125 Identities=13% Similarity=0.009 Sum_probs=66.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCcceeeeeccCCCCCCCC---CCCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNN-GLTWQMTKRRGDQEVHKVTEEKPGWCSDP---HLPP 269 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vHr~~~~~~g~C~~~---~~pp 269 (379)
+.+|||.+.|+|..++...++++++..++.+..+.+....... ........+........ .....+... ...+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS---GGSAYRGGAVKIGYVD 156 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc---CCcccccccccccccc
Confidence 4799999999999999888999998888877776655432211 00000000000000000 000000000 0000
Q ss_pred ccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 270 CAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 270 cT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
+.++ =+|+|++|+.+=.+ .... ..|-|+.+..-+.....++..+....+.|.
T Consensus 157 ~~~~-----~~~~~~~~~~~g~~-~~~~--~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 157 TVHH-----GAYRREVFEKVGGF-DESL--VRNEDAELNYRLRKAGYKIWLSPDIRVYYY 208 (249)
T ss_pred cccc-----ceEEHHHHHHhCCC-Cccc--CccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence 1111 16899999876332 2232 346676554333334678999998888887
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=87.78 E-value=0.32 Score=42.12 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=62.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCcceeee-eccCCCCCCCCCCCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNN--GLTWQMTKRRGDQEVHKV-TEEKPGWCSDPHLPP 269 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vHr~-~~~~~g~C~~~~~pp 269 (379)
+.+|||++.|+|..++.-.++++++.++++ +..+..+....-. ...+.... .+.. ... .......|
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~------- 148 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRS------- 148 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCC-------
Confidence 679999999999999888888888887654 5666555432211 11111000 0000 000 00000111
Q ss_pred ccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeE
Q 017018 270 CAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWI 326 (379)
Q Consensus 270 cT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~V 326 (379)
.+..++=+|+|+++..+-.+- .. -++-|+.+...+.....++..+....+
T Consensus 149 ---~~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 149 ---PFNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred ---CCCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHh
Confidence 111122378999998876552 22 457787766554334567777655443
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.60 E-value=0.84 Score=38.54 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=26.8
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQ 229 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQ 229 (379)
+..|||++.|+|..++.-.+.+.++.. +..+..+..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY 110 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence 468999999999999998888888444 333454443
No 12
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=83.42 E-value=6.1 Score=38.05 Aligned_cols=136 Identities=16% Similarity=0.074 Sum_probs=83.9
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCC-----CCCCCc
Q 017018 196 YEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSD-----PHLPPC 270 (379)
Q Consensus 196 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~-----~~~ppc 270 (379)
|+|++++++|..++...++++++.+++.+-...-+++-.+..-+-.+..+........ .......+.+ ...+.|
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLT-GGWRASPLLEIAPDLSSYLEV 163 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheecccccccc-ccceecccccccccccchhhh
Confidence 5599999999999999999999999999888777776665322222222211000000 0000111111 122334
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCCC
Q 017018 271 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSL 334 (379)
Q Consensus 271 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~PtL 334 (379)
..++..-+-+++|++++.+=.+ ..+.- .+.-|.-|..=+.-...++..+=.-.|.|..--+.
T Consensus 164 ~~~~~G~~~li~~~~~~~vG~~-de~~F-~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 164 VASLSGACLLIRREAFEKVGGF-DERFF-IYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred hhhcceeeeEEcHHHHHHhCCC-Ccccc-eeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 4466777789999999988653 23333 56667666444444456899999999999855444
No 13
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=79.93 E-value=11 Score=32.83 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=67.4
Q ss_pred EEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcce--e---eeeccCCCCCCCCCCCCccc
Q 017018 198 YIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEV--H---KVTEEKPGWCSDPHLPPCAA 272 (379)
Q Consensus 198 YIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~v--H---r~~~~~~g~C~~~~~ppcT~ 272 (379)
||.+.|+|..++.....+..+.++.-+..+.|+...... ....++.-+..... | +......|.| ..
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 71 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRP--------LF 71 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCC--------cc
Confidence 789999999999988899988888558889888887642 11122221111110 0 0000111211 11
Q ss_pred eEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018 273 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 333 (379)
Q Consensus 273 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 333 (379)
+. .-.=++++++++.+=.+-.+. -.|=|..+..=+.....+++.++...+ |+..|.
T Consensus 72 ~~-G~~~~~r~~~l~~vg~~~~~~---~~~ED~~l~~~l~~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 72 LS-GSGMLFRREALREVGGFDDPF---SIGEDMDLGFRLRRAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred cc-CcceeeeHHHHHHhCcccccc---cccchHHHHHHHHHCCCEEEEecccce-eeeCCC
Confidence 11 223479999998762210111 223465554333334589999988844 553444
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=79.87 E-value=1.2 Score=40.08 Aligned_cols=131 Identities=17% Similarity=-0.003 Sum_probs=68.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeee-eecCCcceeeeeccCCCCCCCCCCCCccc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMT-KRRGDQEVHKVTEEKPGWCSDPHLPPCAA 272 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT-~R~~~~~vHr~~~~~~g~C~~~~~ppcT~ 272 (379)
+.+|||++.|.|..++...++++..+....+..+.|+-+.....-...++ .+.-....|.... ..+. ....+..
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 160 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIE-QVAR----SSTGLFF 160 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHh-HhhH----hhcCCeE
Confidence 58999999999999998888887776655555555553321100000000 0000000000000 0000 0000111
Q ss_pred eEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCC
Q 017018 273 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 333 (379)
Q Consensus 273 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 333 (379)
.+=.++-+|+|++|+.+-.+- .+ ..+=|+.+...+.....++..++...+.|...++
T Consensus 161 ~~~g~~~~~rr~~~~~vgg~~-~~---~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~ 217 (232)
T cd06437 161 NFNGTAGVWRKECIEDAGGWN-HD---TLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPAS 217 (232)
T ss_pred EeccchhhhhHHHHHHhCCCC-CC---cchhhHHHHHHHHHCCCeEEEeccceeeeeCCcC
Confidence 111122379999998875442 22 2356777665554456799999888888873333
No 15
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=78.04 E-value=1 Score=39.52 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=25.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 228 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 228 (379)
+..|||++.|+|..++.-.+.++++.+...+..+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 55699999999988776667777776555555443
No 16
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=74.47 E-value=4.3 Score=37.16 Aligned_cols=195 Identities=15% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCceEEEEEeccccccchhHHhhcc----c--cCcEEEEEEeCCCCCccccc--cc----cCccEEEEE--ecccccccc
Q 017018 119 KPKYLLTITVGLNQKKNIDRMVKKF----S--EDFQIMLFHYDGQTSQWDEF--EW----SKSAIHVSI--RRQTKWWYA 184 (379)
Q Consensus 119 ~~kyLv~~~VG~~qk~~Vd~~v~kf----~--~~F~v~LfhYDG~~~~w~d~--~W----s~~aihv~~--~kqtKWw~a 184 (379)
.++.-|.+++ ++....+..+++.. . .+|.|++ -=||+.|+=.++ ++ ....+++.. .+++|=--.
T Consensus 8 ~~~vsVvIp~-yne~~~l~~~l~~l~~~~~~~~~~eiiv-vDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 8 AMKYSIIVPT-YNERLNIALIVYLIFKALQDVKDFEIIV-VDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CceEEEEEcc-CCchhhHHHHHHHHHHHhccCCCeEEEE-EeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 4567777777 55556555544322 1 3677665 457777642111 11 111233332 222322111
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCC-CCc-ceeeeeecCCcceeeeeccCCCCC
Q 017018 185 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN-NGL-TWQMTKRRGDQEVHKVTEEKPGWC 262 (379)
Q Consensus 185 kRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~-S~i-sh~iT~R~~~~~vHr~~~~~~g~C 262 (379)
+.=+ -.+..|||++.|.|...+...++++++.+++.+.++.....-.. +.. .|....+.......... ..+
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~----~~~ 158 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLA----QTL 158 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHH----HHH
Confidence 1101 12578999999999999888889999888777766654432111 111 11111110000000000 000
Q ss_pred CCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 263 SDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 263 ~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
.......++ ..+-+|+|++++.+-.+...+ ...+.+|+.+... ....++.-|.-.++.|.
T Consensus 159 ~~~~~~d~~----g~~~~~rr~~~~~i~~~~~~~-~~~~~~el~~~~~--~~g~~i~~vp~~~~~r~ 218 (243)
T PLN02726 159 LWPGVSDLT----GSFRLYKRSALEDLVSSVVSK-GYVFQMEIIVRAS--RKGYRIEEVPITFVDRV 218 (243)
T ss_pred hCCCCCcCC----CcccceeHHHHHHHHhhccCC-CcEEehHHHHHHH--HcCCcEEEeCcEEeCCC
Confidence 000011111 123379999999886554322 1223444433222 23467888877777765
No 17
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=72.23 E-value=5 Score=38.31 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=51.9
Q ss_pred EEEEecccccc-----chhHHhh---cc--ccCcEEEEEEeCCCCCccc-cc-ccc--CccE-EEEEeccccccc-cccc
Q 017018 124 LTITVGLNQKK-----NIDRMVK---KF--SEDFQIMLFHYDGQTSQWD-EF-EWS--KSAI-HVSIRRQTKWWY-AKRF 187 (379)
Q Consensus 124 v~~~VG~~qk~-----~Vd~~v~---kf--~~~F~v~LfhYDG~~~~w~-d~-~Ws--~~ai-hv~~~kqtKWw~-akRf 187 (379)
+.+||..+... ++..++. ++ +.++.|++..++. .++|. ++ +.. ...+ .+....+.+.|. ++..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 56788776642 3323233 33 3588888877755 44441 11 111 2233 222222222232 2221
Q ss_pred cCcccccCccEEEEecccccCCCCChHHHHH
Q 017018 188 LHPDVVAAYEYIFIWDEDLGVEHFNGDKYME 218 (379)
Q Consensus 188 LHPdiva~YDYIflwDDDL~vd~f~i~ry~~ 218 (379)
-----.+.-|||+++|-|+.++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 1122236899999999999999888888888
No 18
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.80 E-value=1.9 Score=37.22 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=31.7
Q ss_pred cccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 280 VFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 280 VFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
+|+|++++.+-.+. ... .|+-|+.+..++.. ..++.+++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~-~~~--~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFP-DAD--VIMHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccc-ccc--cccchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 79999998876553 222 56777666555543 458888888877766
No 19
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=69.46 E-value=4.4 Score=36.05 Aligned_cols=128 Identities=13% Similarity=-0.063 Sum_probs=63.0
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccce
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 273 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~F 273 (379)
+.+|||++.|+|...+...+++.+..+.+....+.-+.......-...-..+ ....+..... .......++ ||+
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~-~~~-- 156 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTR-WINTLTREQL--LTQVYTSHG-PTV-- 156 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHH-HHHhcCHHHH--HHHHHhhcC-Ccc--
Confidence 6799999999999999888888877776544322222111000000000000 0000000000 000000111 121
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeec
Q 017018 274 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 330 (379)
Q Consensus 274 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 330 (379)
-+-.-+++|++|+.+=.+- +..-+++=|+.+.+.+.....+|.-+|...+.++.
T Consensus 157 -~~~~~~~rr~~~~~~g~f~--~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 157 -IMPTWFCSREWFSHVGPFD--EGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -ccccceeehhHHhhcCCcc--chhccchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 0111257999998775442 22225567876655433345789999987777763
No 20
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=66.73 E-value=2.1 Score=37.82 Aligned_cols=34 Identities=35% Similarity=0.433 Sum_probs=25.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDI 227 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeI 227 (379)
+..|||++.|.|...+...+.++++.+...+..+
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 114 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDI 114 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcE
Confidence 4569999999998887777777777654444444
No 21
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=66.31 E-value=4.4 Score=32.66 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=29.8
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPG 231 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPA 231 (379)
+..|||++.|||..++.-.++++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 56789999999999999999999999999776554433
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=65.35 E-value=3.3 Score=36.67 Aligned_cols=85 Identities=7% Similarity=-0.009 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCCCCcccc----ccccCccEEEEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHH
Q 017018 146 DFQIMLFHYDGQTSQWDE----FEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVK 221 (379)
Q Consensus 146 ~F~v~LfhYDG~~~~w~d----~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr 221 (379)
.+.|++ -=||+.++=.+ ........++...+++|-.-...-+ -.+.+|||++.|+|..++...++++++.+.
T Consensus 28 ~~eiiv-vdd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~---~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 28 PLEIIV-VTDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGI---RHVTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCEEEE-EeCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHH---HHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 566654 34665543211 1222334444555555543222111 125799999999999999999999999988
Q ss_pred HhCCcccCCCccC
Q 017018 222 KHGLDISQPGLEP 234 (379)
Q Consensus 222 ~~gLeISQPALd~ 234 (379)
..+..+.++....
T Consensus 104 ~~~v~~v~~~~~~ 116 (235)
T cd06434 104 DPKVGGVGTNQRI 116 (235)
T ss_pred CCCEeEEcCceEe
Confidence 7788888776544
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=64.68 E-value=5.4 Score=35.93 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=31.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCcc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLE 233 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd 233 (379)
+..|||++.|+|...+...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3569999999999999877888888886666666665554
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=64.01 E-value=5.6 Score=35.04 Aligned_cols=125 Identities=11% Similarity=-0.095 Sum_probs=70.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH-hCCcccCCCccCC-CCcceeeeeecC---CcceeeeeccCCCCCCCCCCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKK-HGLDISQPGLEPN-NGLTWQMTKRRG---DQEVHKVTEEKPGWCSDPHLP 268 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQPALd~~-S~ish~iT~R~~---~~~vHr~~~~~~g~C~~~~~p 268 (379)
+.+|||++.|+|..++.-.++++++.+.+ .++.+.++..... ......+..... ....+. ....... .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~ 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGV-IQPGRDR------W 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHH-HHHHHhh------c
Confidence 47999999999999999999999999887 6676776543111 000000010000 000000 0000000 0
Q ss_pred CccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeec
Q 017018 269 PCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 330 (379)
Q Consensus 269 pcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 330 (379)
++. ++=.+.=+|+|++++.+-.+- .+ ..+-|+.+..-+.....+|..++...+.|..
T Consensus 156 ~~~-~~~g~~~~~r~~~~~~ig~~~-~~---~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 GAA-FCCGSGAVVRREALDEIGGFP-TD---SVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred CCc-eecCceeeEeHHHHHHhCCCC-cc---ceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 111 221234489999999886552 22 3467877764443345688888888777763
No 25
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=61.89 E-value=6.2 Score=35.65 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=70.1
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH--hCCcccCCCccCCCCc-ceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKK--HGLDISQPGLEPNNGL-TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 270 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~--~gLeISQPALd~~S~i-sh~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 270 (379)
+.||||++.|+|+.++.-.+.++..-... .|+-=+.|-..+..++ +.-...-. ..|..... ...=
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~---~~~~~~~~---------a~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFF---NFLPGVLQ---------ALGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHH---hHHHHHHH---------HhcC
Confidence 79999999999999988777777765544 3332222222222111 00000000 00100000 0011
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccC
Q 017018 271 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIP 332 (379)
Q Consensus 271 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~P 332 (379)
++|+=.|+=.|+|++++..=-+ +.+.+.-.=||.++..+.....+|...... |.|+.+|
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG~--~~l~~~ladD~~l~~~~~~~G~~v~~~~~~-v~~~~~~ 156 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGGF--EALADYLADDYALGRRLRARGYRVVLSPYP-VVQTSVP 156 (175)
T ss_pred CCceecceeeeEHHHHHHcccH--HHHhhhhhHHHHHHHHHHHCCCeEEEcchh-eeecccC
Confidence 5677788889999999866211 234445577999999887777788776643 4454333
No 26
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=59.82 E-value=6.9 Score=38.79 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=94.1
Q ss_pred ceEEEEEeccccccchhHHhhcc------------ccCcEEEEEEeCCCCCcccc--ccccCc------cEEEE--Eecc
Q 017018 121 KYLLTITVGLNQKKNIDRMVKKF------------SEDFQIMLFHYDGQTSQWDE--FEWSKS------AIHVS--IRRQ 178 (379)
Q Consensus 121 kyLv~~~VG~~qk~~Vd~~v~kf------------~~~F~v~LfhYDG~~~~w~d--~~Ws~~------aihv~--~~kq 178 (379)
+--|.+++ ++...++..+++.. ..++.|+ +.-||+.|+=.+ -++.++ .+++. .+++
T Consensus 71 ~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EII-VVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~ 148 (333)
T PTZ00260 71 DLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEII-IVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNK 148 (333)
T ss_pred EEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEE-EEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCC
Confidence 44555554 44555565555432 1256665 468888875322 112111 14443 3455
Q ss_pred ccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHH---hCCcccCCCccC--CC-Cc-ceeeeeecCCcce
Q 017018 179 TKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK---HGLDISQPGLEP--NN-GL-TWQMTKRRGDQEV 251 (379)
Q Consensus 179 tKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~---~gLeISQPALd~--~S-~i-sh~iT~R~~~~~v 251 (379)
+|-.-.+.=+. .+..|||++.|.|...+..++.++++.+++ .+.++..-+... ++ .. ..+..++--...+
T Consensus 149 G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~ 225 (333)
T PTZ00260 149 GKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGF 225 (333)
T ss_pred ChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHH
Confidence 66543332111 257899999999999999999999998875 444443332211 11 00 1111111001111
Q ss_pred eeeeccCCCCCCCCCCCCccceEEEecc--cccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeee
Q 017018 252 HKVTEEKPGWCSDPHLPPCAAFVEIMAP--VFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQ 324 (379)
Q Consensus 252 Hr~~~~~~g~C~~~~~ppcT~FVEiMAP--VFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~ 324 (379)
|.-. ..+.+ ++.-+.++. +|+|++++-+.+.+ ...+|+.|.-+...+...+.+|.-|--.
T Consensus 226 ~~l~----~~~~~------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 226 HFIV----NTICG------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred HHHH----HHHcC------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHHcCCCEEEEcee
Confidence 1100 00001 123333333 89999998774332 2348888877766665444455544333
No 27
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=57.13 E-value=5.8 Score=35.36 Aligned_cols=123 Identities=13% Similarity=-0.073 Sum_probs=63.5
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccceE
Q 017018 195 AYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFV 274 (379)
Q Consensus 195 ~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~FV 274 (379)
.||||++.|+|..++.-.+.++++.++..+..+.++.......-..++.... ...... .......+. +...+ .++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~-~~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMC-YAEYKG-FFDIGMVSR--NERNA-IIQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHH-hHHHHH-HHHHHhccc--cccCc-eEE
Confidence 4999999999999999888998888876677766653322111000110000 000000 000000000 00111 122
Q ss_pred EEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeE
Q 017018 275 EIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWI 326 (379)
Q Consensus 275 EiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~V 326 (379)
-..+-+|+|++++.+=.+ ..+. -+=|+.+..-+.....++..++...+
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~~ 206 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-DEWC---ITEDSELGLRMHEAGYIGVYVAQSYG 206 (236)
T ss_pred ecceEEEEHHHHHHhCCC-CCcc---ccchHHHHHHHHHCCcEEEEcchhhc
Confidence 222347999999987433 2222 14477766555445678888876444
No 28
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=54.77 E-value=33 Score=29.00 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=20.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELV 220 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Iv 220 (379)
+.+|||+++|+|..++...+.+.++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 579999999999988765566655543
No 29
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.19 E-value=4.7 Score=32.33 Aligned_cols=17 Identities=35% Similarity=1.028 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhheeEee
Q 017018 19 LIITTFIGVLIGYFVGR 35 (379)
Q Consensus 19 ~~~~~~~~~~~g~~~g~ 35 (379)
+|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888899999999863
No 30
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=52.90 E-value=7.6 Score=37.31 Aligned_cols=189 Identities=16% Similarity=0.143 Sum_probs=78.1
Q ss_pred eEEEEEeccccccchhHHhhccccCcEEEEE-EeCCCCCccccccccCc-cEEEEEeccc-----cccccc-ccc-Cccc
Q 017018 122 YLLTITVGLNQKKNIDRMVKKFSEDFQIMLF-HYDGQTSQWDEFEWSKS-AIHVSIRRQT-----KWWYAK-RFL-HPDV 192 (379)
Q Consensus 122 yLv~~~VG~~qk~~Vd~~v~kf~~~F~v~Lf-hYDG~~~~w~d~~Ws~~-aihv~~~kqt-----KWw~ak-RfL-HPdi 192 (379)
+..++|....-+..+..+.+-|....+-.+| .-|..-.+.. .. .+|+...+.. |++..+ .+. +--+
T Consensus 9 ~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~ 83 (252)
T PF02434_consen 9 FIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSLP-----TVTGVHLVNPNCDAGHCRKTLSCKMAYEYDHFL 83 (252)
T ss_dssp EEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHHH-----HHHGGGEEE-------------HHHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccccccc-----cccccccccCCCcchhhHHHHHHHHHHHHHhhh
Confidence 4445555555577888888877644443344 2344222221 11 1233222211 111112 111 1122
Q ss_pred ccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCCCCCCCCCCccc
Q 017018 193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAA 272 (379)
Q Consensus 193 va~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppcT~ 272 (379)
...+||+++.|||..| +++++.++...++- +||-.=...+..++++.. |+-.. ......+-.
T Consensus 84 ~~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~~~~~~~~~~------~~~~~-------~~~~~~~~~ 145 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRPSGDRPIEII------HRFNP-------NKSKDSGFW 145 (252)
T ss_dssp HHT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-EE-----------------------------------
T ss_pred cCCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeeeccCccceee------ccccc-------cccCcCceE
Confidence 3578999999999987 66777777665442 333221111111222210 00000 000111234
Q ss_pred eEEEec-ccccHHHHHHh--hh----hhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEeeccCCCC
Q 017018 273 FVEIMA-PVFSREAWRCV--WH----MIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLG 335 (379)
Q Consensus 273 FVEiMA-PVFSR~Awrcv--w~----miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~PtLg 335 (379)
|.-..| -|+||.+.+.+ |. +.+.+..-.+.=|..+++|++. .-+|=.+++ .-.|.-+|.|.
T Consensus 146 f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~-~lgv~lt~s-~~fhs~~~~l~ 213 (252)
T PF02434_consen 146 FATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN-LLGVPLTHS-PLFHSHLENLQ 213 (252)
T ss_dssp EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH-TT---EEE--TT---SSS-GG
T ss_pred eeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh-cCCcceeec-hhhcccCcccc
Confidence 555555 38999999877 22 2222333356779999999974 234444554 55677777764
No 31
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=49.45 E-value=29 Score=30.35 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=46.9
Q ss_pred cCcEEEEEEeCCCCCccccccccCccEEEEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhC
Q 017018 145 EDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHG 224 (379)
Q Consensus 145 ~~F~v~LfhYDG~~~~w~d~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~g 224 (379)
.++.|+++ -|++.++=.++- .+.-+++...++++-.-.+.=+ -.+.+|||++.|+|..++...+++++......+
T Consensus 27 ~~~evivv-dd~s~d~~~~~~-~~~~~~~~~~~~g~~~a~n~g~---~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 27 LPLEIIVV-DGGSTDGTVAIA-RSAGVVVISSPKGRARQMNAGA---AAARGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred CCcEEEEE-eCCCCccHHHHH-hcCCeEEEeCCcCHHHHHHHHH---HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 56777764 666554321210 0112334444444321111111 124589999999999999888888877666666
Q ss_pred CcccCCCcc
Q 017018 225 LDISQPGLE 233 (379)
Q Consensus 225 LeISQPALd 233 (379)
..++.+...
T Consensus 102 ~~~~~~~~~ 110 (221)
T cd02522 102 AVAGAFRLR 110 (221)
T ss_pred cEEEEEEee
Confidence 555554443
No 32
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=44.06 E-value=24 Score=34.04 Aligned_cols=94 Identities=10% Similarity=0.240 Sum_probs=52.1
Q ss_pred ccccccchhHHhhccc--cCcEEEEEEeCCCCCccccccccCccEEEEEeccccccccccccCcccccCccEEEEecccc
Q 017018 129 GLNQKKNIDRMVKKFS--EDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDL 206 (379)
Q Consensus 129 G~~qk~~Vd~~v~kf~--~~F~v~LfhYDG~~~~w~d~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL 206 (379)
..+....+.++|+... +.=.=+++..-+...--...+|....+-|....+++=-.-+||+-.+. -.=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~-i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPE-IETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccc-cCcceEEEecCCc
Confidence 4444555666666553 233323333333222222245666666677777777667788875333 3479999999999
Q ss_pred cCCCCChHHHHHHHHHh
Q 017018 207 GVEHFNGDKYMELVKKH 223 (379)
Q Consensus 207 ~vd~f~i~ry~~Ivr~~ 223 (379)
.++..+++.-|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999888887743
No 33
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=43.70 E-value=19 Score=28.04 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=19.2
Q ss_pred CccEEEEecccccCCCCChHHH
Q 017018 195 AYEYIFIWDEDLGVEHFNGDKY 216 (379)
Q Consensus 195 ~YDYIflwDDDL~vd~f~i~ry 216 (379)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 34
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=43.17 E-value=61 Score=32.05 Aligned_cols=101 Identities=18% Similarity=0.288 Sum_probs=61.3
Q ss_pred CceEEEEEeccccccchhHHhhcc-------ccCcEEEEEEeCCCCCccccc--cc----cCccEEE-EEeccccccccc
Q 017018 120 PKYLLTITVGLNQKKNIDRMVKKF-------SEDFQIMLFHYDGQTSQWDEF--EW----SKSAIHV-SIRRQTKWWYAK 185 (379)
Q Consensus 120 ~kyLv~~~VG~~qk~~Vd~~v~kf-------~~~F~v~LfhYDG~~~~w~d~--~W----s~~aihv-~~~kqtKWw~ak 185 (379)
++.-|.+|| +++..++.++++.. ..+|.|+ +.=||+.|.-.+. ++ ..+.+++ ..++.+|..-.+
T Consensus 6 ~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EII-vVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~ 83 (325)
T PRK10714 6 KKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEIL-LIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIM 83 (325)
T ss_pred CeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEE-EEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHH
Confidence 345555554 55555665555432 3467766 5678888865432 11 1223322 344555554333
Q ss_pred c-ccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcc
Q 017018 186 R-FLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDI 227 (379)
Q Consensus 186 R-fLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeI 227 (379)
. +.| +.+|||++.|.|+..+...+.++++.++ .|.++
T Consensus 84 ~G~~~----A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~Dv 121 (325)
T PRK10714 84 AGFSH----VTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDV 121 (325)
T ss_pred HHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCE
Confidence 2 223 5799999999999999999999999875 34443
No 35
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=42.79 E-value=1e+02 Score=27.70 Aligned_cols=176 Identities=16% Similarity=0.196 Sum_probs=88.5
Q ss_pred cccccCCCCcCcCCCCceEEEEEecccc--ccchhHHhhcccc-CcEEEEEEeCCCCCccccccccCccEEEEEeccccc
Q 017018 105 LRRLWGEPSEDLKKKPKYLLTITVGLNQ--KKNIDRMVKKFSE-DFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKW 181 (379)
Q Consensus 105 l~~lwg~p~~~~~~~~kyLv~~~VG~~q--k~~Vd~~v~kf~~-~F~v~LfhYDG~~~~w~d~~Ws~~aihv~~~kqtKW 181 (379)
+|.-||++..-. ..+.-+.+-+|... ...++..+++=.+ .=||+++.+ .|.+..+. .+.+ -.-+|
T Consensus 6 IR~TW~~~~~~~--~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K~~-----~~~~w 73 (195)
T PF01762_consen 6 IRETWGNQRNFK--GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LKTL-----AGLKW 73 (195)
T ss_pred HHHHHhcccccC--CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HHHH-----HHHHH
Confidence 567788776422 24566777778877 4456665655233 347776544 45454331 1111 11122
Q ss_pred cccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcc--eeeeeccCC
Q 017018 182 WYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQE--VHKVTEEKP 259 (379)
Q Consensus 182 w~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~--vHr~~~~~~ 259 (379)
..+. ..+++||+..|||+-| ++.++++..++.-.+...+.+.. ......-..|.+..+ +....+
T Consensus 74 -~~~~------c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g-~~~~~~~~~r~~~~kw~v~~~~y--- 139 (195)
T PF01762_consen 74 -ASKH------CPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYG-GCIKNGPPIRDPSSKWYVSEEEY--- 139 (195)
T ss_pred -HHhh------CCchhheeecCcEEEE---ehHHhhhhhhhcccCcccccccc-ccccCCccccccccCceeeeeec---
Confidence 2221 1358999999999988 55666666665522222222211 111111122222222 111000
Q ss_pred CCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcC
Q 017018 260 GWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEP 313 (379)
Q Consensus 260 g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~ 313 (379)
+....||+ ....+-++|+++.+.+....+ ....-+-=|-.++.|++.
T Consensus 140 ---~~~~yP~y---~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 ---PDDYYPPY---CSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ---ccccCCCc---CCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 11234443 346777999999988766543 222223334445888764
No 36
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=42.74 E-value=15 Score=29.44 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=26.2
Q ss_pred CccEEEEecccccCCCCChHHH-HHHHHHhCCcccCCCc
Q 017018 195 AYEYIFIWDEDLGVEHFNGDKY-MELVKKHGLDISQPGL 232 (379)
Q Consensus 195 ~YDYIflwDDDL~vd~f~i~ry-~~Ivr~~gLeISQPAL 232 (379)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998887767777 3333444444444444
No 37
>PRK01844 hypothetical protein; Provisional
Probab=42.24 E-value=9.4 Score=31.33 Aligned_cols=15 Identities=27% Similarity=0.860 Sum_probs=11.4
Q ss_pred HHHHHHHHHhheeEe
Q 017018 20 IITTFIGVLIGYFVG 34 (379)
Q Consensus 20 ~~~~~~~~~~g~~~g 34 (379)
|++.++|++.|||++
T Consensus 11 I~~li~G~~~Gff~a 25 (72)
T PRK01844 11 VVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777888888875
No 38
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=40.47 E-value=22 Score=30.66 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQP 230 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Iv-r~~gLeISQP 230 (379)
+.+|||++.|+|..++.-.++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888888888887 4455555543
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=39.97 E-value=78 Score=32.41 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=56.9
Q ss_pred CceEEEEEeccccccchhHHhhcc---c-cCcEEEEEEeCCCCCccccc--cccC--ccEEEEE--eccccccccccccC
Q 017018 120 PKYLLTITVGLNQKKNIDRMVKKF---S-EDFQIMLFHYDGQTSQWDEF--EWSK--SAIHVSI--RRQTKWWYAKRFLH 189 (379)
Q Consensus 120 ~kyLv~~~VG~~qk~~Vd~~v~kf---~-~~F~v~LfhYDG~~~~w~d~--~Ws~--~aihv~~--~kqtKWw~akRfLH 189 (379)
|+.-|.+++=... ..+.+.++.. . ++|+|++ -=||+.|+..+. ++.. ..+++.. .+++|=.-.+.-+
T Consensus 75 p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~eIiv-VdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl- 151 (444)
T PRK14583 75 PLVSILVPCFNEG-LNARETIHAALAQTYTNIEVIA-INDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA- 151 (444)
T ss_pred CcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCeEEEE-EECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH-
Confidence 4566666664433 3454455433 1 4788775 558888765431 1111 1233333 4566643333211
Q ss_pred cccccCccEEEEecccccCCCCChHHHHHHHHH
Q 017018 190 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK 222 (379)
Q Consensus 190 Pdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 222 (379)
..+.||||.+.|.|-.++...+.++.+-+.+
T Consensus 152 --~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 152 --AAARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred --HhCCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 2267999999999999988888887775543
No 40
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.45 E-value=23 Score=30.89 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=28.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 230 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQP 230 (379)
+.+|||++.|+|..++.-.++++++...+.+-...+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 5799999999999998888888888666555444333
No 41
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=35.27 E-value=14 Score=32.12 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=21.2
Q ss_pred CCCCCcchh---HHHHHHHH--HHhheeEeeeecc
Q 017018 10 LKKTNDGGR---LIITTFIG--VLIGYFVGRSFQS 39 (379)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~--~~~g~~~g~s~p~ 39 (379)
.-||+.+.+ +|+.+++. +++|+|+|++|=+
T Consensus 8 ~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 8 EVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888877 44444444 6789999999854
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=35.17 E-value=36 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=29.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCC
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPG 231 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~--gLeISQPA 231 (379)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 679999999999999988888888877643 34444543
No 43
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=35.00 E-value=25 Score=31.93 Aligned_cols=49 Identities=24% Similarity=0.569 Sum_probs=35.4
Q ss_pred cccccccCcccccCccEEEEecccc-------cCCCCCh-----------HHHHHHHHHhCCcccCCCccCCC
Q 017018 182 WYAKRFLHPDVVAAYEYIFIWDEDL-------GVEHFNG-----------DKYMELVKKHGLDISQPGLEPNN 236 (379)
Q Consensus 182 w~akRfLHPdiva~YDYIflwDDDL-------~vd~f~i-----------~ry~~Ivr~~gLeISQPALd~~S 236 (379)
|+++||+-|+ =+++|+.++.+ +...|++ -.|=-++++||| .+|||..=.
T Consensus 16 WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~la 82 (135)
T PF09828_consen 16 WLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARLA 82 (135)
T ss_pred HHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHHH
Confidence 9999999886 57788888771 2223443 246678899999 899996543
No 44
>PRK11677 hypothetical protein; Provisional
Probab=34.41 E-value=15 Score=33.07 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhheeEeeee
Q 017018 19 LIITTFIGVLIGYFVGRSF 37 (379)
Q Consensus 19 ~~~~~~~~~~~g~~~g~s~ 37 (379)
.++..++|+++|||+|-..
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3556667777777776543
No 45
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=32.60 E-value=42 Score=33.61 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.5
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 017018 196 YEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 228 (379)
Q Consensus 196 YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeIS 228 (379)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.22 E-value=16 Score=32.00 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhheeEeeee
Q 017018 19 LIITTFIGVLIGYFVGRSF 37 (379)
Q Consensus 19 ~~~~~~~~~~~g~~~g~s~ 37 (379)
.|+..++|+++||+++-.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3677788888888887544
No 47
>PRK00523 hypothetical protein; Provisional
Probab=32.07 E-value=17 Score=29.85 Aligned_cols=15 Identities=47% Similarity=0.848 Sum_probs=10.9
Q ss_pred HHHHHHHHHhheeEe
Q 017018 20 IITTFIGVLIGYFVG 34 (379)
Q Consensus 20 ~~~~~~~~~~g~~~g 34 (379)
|++.++|++.|||++
T Consensus 12 i~~li~G~~~Gffia 26 (72)
T PRK00523 12 IPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777788888875
No 48
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=27.36 E-value=30 Score=27.54 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=14.0
Q ss_pred cccccCccEEEEeccc
Q 017018 190 PDVVAAYEYIFIWDED 205 (379)
Q Consensus 190 Pdiva~YDYIflwDDD 205 (379)
..+...|||||++|.+
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 4778899999999985
No 49
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=25.78 E-value=39 Score=28.23 Aligned_cols=44 Identities=34% Similarity=0.544 Sum_probs=34.2
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCc
Q 017018 185 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGL 232 (379)
Q Consensus 185 kRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPAL 232 (379)
..|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+-
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA 77 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGA 77 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCe
Confidence 3489999999999999999999997644 4555666677765443
No 50
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=25.27 E-value=1.1e+02 Score=28.70 Aligned_cols=87 Identities=17% Similarity=0.081 Sum_probs=50.8
Q ss_pred ceEEEEEeccccccchhHHhhcc-ccCcEEEEEEeCCCCCccccccccCccEEEEEeccccccccccccCcccccCccEE
Q 017018 121 KYLLTITVGLNQKKNIDRMVKKF-SEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYI 199 (379)
Q Consensus 121 kyLv~~~VG~~qk~~Vd~~v~kf-~~~F~v~LfhYDG~~~~w~d~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYI 199 (379)
-.+..++-|++. .+.+++-+-. ..++.+-+..++- .++..+++. ...-+++-+ .||+=|+++..||-|
T Consensus 31 ~~~~il~~~is~-~~~~~L~~~~~~~~~~i~~~~~~~--~~~~~~~~~-------~~~~~~~~y-~RL~i~~llp~~~kv 99 (246)
T cd00505 31 LRFHVLTNPLSD-TFKAALDNLRKLYNFNYELIPVDI--LDSVDSEHL-------KRPIKIVTL-TKLHLPNLVPDYDKI 99 (246)
T ss_pred eEEEEEEccccH-HHHHHHHHHHhccCceEEEEeccc--cCcchhhhh-------cCcccccee-HHHHHHHHhhccCeE
Confidence 346666666654 2333322211 2467777666642 444444332 011123333 445558988889999
Q ss_pred EEecccccCCCCChHHHHHH
Q 017018 200 FIWDEDLGVEHFNGDKYMEL 219 (379)
Q Consensus 200 flwDDDL~vd~f~i~ry~~I 219 (379)
...|.|+.+- -+++.++++
T Consensus 100 lYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 100 LYVDADILVL-TDIDELWDT 118 (246)
T ss_pred EEEcCCeeec-cCHHHHhhc
Confidence 9999999886 688888864
No 51
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.49 E-value=21 Score=33.37 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.1
Q ss_pred HHHHHHHHHhheeEeeee
Q 017018 20 IITTFIGVLIGYFVGRSF 37 (379)
Q Consensus 20 ~~~~~~~~~~g~~~g~s~ 37 (379)
|+++++|+++|+++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677777777777554
No 52
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.51 E-value=36 Score=37.37 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=39.8
Q ss_pred EEEEEeCCCCCc-cccccccCccEEEEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHH
Q 017018 149 IMLFHYDGQTSQ-WDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYME 218 (379)
Q Consensus 149 v~LfhYDG~~~~-w~d~~Ws~~aihv~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~ 218 (379)
|.+|-|-.+++. ...+ .-.-|+-.+.|-.--..-++||--+.+.|||++|--||..|++|-.-|++.
T Consensus 53 v~~F~~~~~i~~~~a~~---~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~ 120 (681)
T KOG3708|consen 53 VHLFADSSRIDNDLAQL---TNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLID 120 (681)
T ss_pred eEEeeccccccccHhhc---cccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHh
Confidence 677777665553 2211 112222222221112223355555789999999999999999887777665
No 53
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=23.28 E-value=1.5e+02 Score=33.13 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=62.6
Q ss_pred CCceEEEEEecccccc----chhHHhhc-----cccCcEEEEEEeCCCCCcccccc------ccC-----ccEEEEEecc
Q 017018 119 KPKYLLTITVGLNQKK----NIDRMVKK-----FSEDFQIMLFHYDGQTSQWDEFE------WSK-----SAIHVSIRRQ 178 (379)
Q Consensus 119 ~~kyLv~~~VG~~qk~----~Vd~~v~k-----f~~~F~v~LfhYDG~~~~w~d~~------Ws~-----~aihv~~~kq 178 (379)
.++.-|.+|+=-...+ .+.++.+. ..++|++.++. |++.++-...| +.+ .-++|..+..
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLd-D~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILS-DTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 3466666666443322 34444432 34689997765 77665421111 111 1355544332
Q ss_pred ccccccccccCcccc----cCccEEEEecccccCCCCChHHHHHHHH-HhCCcccC
Q 017018 179 TKWWYAKRFLHPDVV----AAYEYIFIWDEDLGVEHFNGDKYMELVK-KHGLDISQ 229 (379)
Q Consensus 179 tKWw~akRfLHPdiv----a~YDYIflwDDDL~vd~f~i~ry~~Ivr-~~gLeISQ 229 (379)
. ...|.----|.+ ..||||.+.|=|..++...+.+++..++ .-++-+-|
T Consensus 202 n--~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 N--VGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred C--CCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 2 233332111112 6899999999999999999999999886 44666666
No 54
>PRK10073 putative glycosyl transferase; Provisional
Probab=23.23 E-value=72 Score=31.50 Aligned_cols=105 Identities=19% Similarity=0.207 Sum_probs=59.0
Q ss_pred CceEEEEEeccccccchhHHhhcc----ccCcEEEEEEeCCCCCcccc--ccccC--ccEEEE-EeccccccccccccCc
Q 017018 120 PKYLLTITVGLNQKKNIDRMVKKF----SEDFQIMLFHYDGQTSQWDE--FEWSK--SAIHVS-IRRQTKWWYAKRFLHP 190 (379)
Q Consensus 120 ~kyLv~~~VG~~qk~~Vd~~v~kf----~~~F~v~LfhYDG~~~~w~d--~~Ws~--~aihv~-~~kqtKWw~akRfLHP 190 (379)
|+.-|.++| ++....+.+.++-. ..+|.|++ .=||++|+=.+ -+|.+ ..+++. ..+++. +.....-
T Consensus 6 p~vSVIIP~-yN~~~~L~~~l~Sl~~Qt~~~~EIIi-VdDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~---~~arN~g 80 (328)
T PRK10073 6 PKLSIIIPL-YNAGKDFRAFMESLIAQTWTALEIII-VNDGSTDNSVEIAKHYAENYPHVRLLHQANAGV---SVARNTG 80 (328)
T ss_pred CeEEEEEec-cCCHHHHHHHHHHHHhCCCCCeEEEE-EeCCCCccHHHHHHHHHhhCCCEEEEECCCCCh---HHHHHHH
Confidence 456677776 33334444444433 25788776 45888764111 11211 123322 223321 1000000
Q ss_pred ccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccC
Q 017018 191 DVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQ 229 (379)
Q Consensus 191 diva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQ 229 (379)
=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 81 l~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 81 LAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 112578999999999888888888999988888777754
No 55
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=22.96 E-value=81 Score=27.28 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=24.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKK 222 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 222 (379)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888877653
No 56
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=21.59 E-value=61 Score=32.30 Aligned_cols=125 Identities=11% Similarity=0.025 Sum_probs=63.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCC---CCcceeeeeecCCcceeeeeccCCCCCCCCCCCCc
Q 017018 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN---NGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 270 (379)
Q Consensus 194 a~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~---S~ish~iT~R~~~~~vHr~~~~~~g~C~~~~~ppc 270 (379)
+.+|||.+.|.|..++..-+.+..+-.+..+..+.+-..... +..+.-.+ ..-..... ++........++
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~-~~~~~~~~------~~~~~~~~~~~~ 197 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGA-MGINHNFL------PSVMVARALGRA 197 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHH-HHhhhhhh------HHHHHHHhccCC
Confidence 689999999999999888888887777655555544321110 00000000 00000000 000000000000
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 271 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 271 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
.|+-..+=+|+|++++.+=.+ ++..+..+=|+.+.+-+.....++.+.+.. +.|+
T Consensus 198 -~~~~G~~~a~RR~~l~~iGGf--~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~-v~~~ 252 (373)
T TIGR03472 198 -RFCFGATMALRRATLEAIGGL--AALAHHLADDYWLGELVRALGLRVVLAPVV-VDTD 252 (373)
T ss_pred -ccccChhhheeHHHHHHcCCh--HHhcccchHHHHHHHHHHHcCCeEEecchh-hhcC
Confidence 111112236899999877433 122233355888877776667888877653 5554
No 57
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=21.47 E-value=52 Score=35.42 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=45.8
Q ss_pred EEEeccccccccccccCc------------ccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcc
Q 017018 173 VSIRRQTKWWYAKRFLHP------------DVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLT 239 (379)
Q Consensus 173 v~~~kqtKWw~akRfLHP------------diva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~is 239 (379)
+....|.|||-..||-|- +.. -|||++.|+|..+++-+- +.+.-..+|.|-.|-|...+.+|
T Consensus 77 ~~d~~~pk~W~~sr~q~lm~lKeea~~~~r~~~--adyilf~d~d~lLts~dT---l~llm~l~~~ivapml~S~~~yS 150 (568)
T KOG4179|consen 77 YPDEHGPKHWPDSRFQHLMSLKEEALNWARSGW--ADYILFKDEDNLLTSGDT---LPLLMNLILPIVAPMLKSHVLYS 150 (568)
T ss_pred cCcccCCccCchHHHHHHHHHHHHHHHHHHhhh--cceeEEeehhheeeCCch---HhHHHhcccceechhhhcccccc
Confidence 345678999999998662 333 389999999988876654 34445678999999888776544
No 58
>PRK11204 N-glycosyltransferase; Provisional
Probab=21.25 E-value=79 Score=31.52 Aligned_cols=192 Identities=13% Similarity=0.083 Sum_probs=89.4
Q ss_pred CceEEEEEeccccccchhHHhhccc----cCcEEEEEEeCCCCCccccc--cccCc--cEEEE--EeccccccccccccC
Q 017018 120 PKYLLTITVGLNQKKNIDRMVKKFS----EDFQIMLFHYDGQTSQWDEF--EWSKS--AIHVS--IRRQTKWWYAKRFLH 189 (379)
Q Consensus 120 ~kyLv~~~VG~~qk~~Vd~~v~kf~----~~F~v~LfhYDG~~~~w~d~--~Ws~~--aihv~--~~kqtKWw~akRfLH 189 (379)
++.-+.+++= +..+.+.+.++... ++++|++. =||+.|+=.+. ++..+ -+++. ..+.+|=.-.+.-+
T Consensus 54 p~vsViIp~y-ne~~~i~~~l~sl~~q~yp~~eiiVv-dD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~- 130 (420)
T PRK11204 54 PGVSILVPCY-NEGENVEETISHLLALRYPNYEVIAI-NDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGA- 130 (420)
T ss_pred CCEEEEEecC-CCHHHHHHHHHHHHhCCCCCeEEEEE-ECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHH-
Confidence 3455555553 33344544444321 36777754 45655542211 01111 12322 23444432222211
Q ss_pred cccccCccEEEEecccccCCCCChHHHHHHHHH-hCCcccCC--CccCCC-CcceeeeeecCCc-ceeeeeccCCCCCCC
Q 017018 190 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK-HGLDISQP--GLEPNN-GLTWQMTKRRGDQ-EVHKVTEEKPGWCSD 264 (379)
Q Consensus 190 Pdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~-~gLeISQP--ALd~~S-~ish~iT~R~~~~-~vHr~~~~~~g~C~~ 264 (379)
-.+.||||++.|.|..++...++++.+.+++ .+..+.|. ...... ...+..+..-... .+-++.....|.
T Consensus 131 --~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 205 (420)
T PRK11204 131 --AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGR--- 205 (420)
T ss_pred --HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCC---
Confidence 1267999999999999988888888887753 33444332 221111 0000000000000 000000000000
Q ss_pred CCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhhHhhhHhhcCCCCeEEEEeeeeEEee
Q 017018 265 PHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 329 (379)
Q Consensus 265 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 329 (379)
...+-.++-+|+|++++.+=.+ ..+.. +=|+.+..-+.....++..+....+.|.
T Consensus 206 ------~~~~~G~~~~~rr~~l~~vgg~-~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~~~~ 260 (420)
T PRK11204 206 ------VFTVSGVITAFRKSALHEVGYW-STDMI---TEDIDISWKLQLRGWDIRYEPRALCWIL 260 (420)
T ss_pred ------ceEecceeeeeeHHHHHHhCCC-CCCcc---cchHHHHHHHHHcCCeEEeccccEEEeE
Confidence 0112223447999999876333 22222 3466665555445678888888777776
No 59
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=21.23 E-value=68 Score=33.07 Aligned_cols=106 Identities=18% Similarity=0.231 Sum_probs=60.6
Q ss_pred cccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCcceeeeeccCCCC
Q 017018 182 WYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGW 261 (379)
Q Consensus 182 w~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vHr~~~~~~g~ 261 (379)
+.+..+++-.+..+||+++.-|||..+=-.|..++|. + +|++.-+ -+=.+ ++-|..
T Consensus 155 r~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~---~---------yDp~~p~--YiG~~---~~~~~~------- 210 (364)
T KOG2246|consen 155 RIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLS---K---------YDPEKPV--YLGYR---SKSYFQ------- 210 (364)
T ss_pred HHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHh---h---------cCCCCcE--Eeccc---cccccc-------
Confidence 4555556566778999999999998775555555554 3 4444311 11111 111110
Q ss_pred CCCCCCCCccceEEEecc-cccHHHHHH-hhhhhcC------CCcccchhhHhhhHhhcCCCCeEEEEee
Q 017018 262 CSDPHLPPCAAFVEIMAP-VFSREAWRC-VWHMIQN------DLVHGWGLDFALRRCVEPAHEKIGVVDS 323 (379)
Q Consensus 262 C~~~~~ppcT~FVEiMAP-VFSR~Awrc-vw~miqn------DLvhGWGLDf~~~~c~~~~~~kiGVVDa 323 (379)
.+|.=.||- |.|++|.+- +-.+..+ +-.+ +|=|...++|++.- .|...|+
T Consensus 211 ---------~~y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~--GV~~~d~ 268 (364)
T KOG2246|consen 211 ---------NGYSSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPS-YGEDRRIGRCLAEV--GVPATDE 268 (364)
T ss_pred ---------cccccCCCCcceeHHHHHHHHHHHhcchhhcccccCC-chhHHHHHHHHHHh--CCCccCc
Confidence 135556665 788888854 3222211 1123 79999999999742 3444555
No 60
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=20.97 E-value=1.5e+02 Score=33.20 Aligned_cols=176 Identities=19% Similarity=0.331 Sum_probs=89.2
Q ss_pred ccCCccc----cccccCCCCcCcCCCCceEEEEEeccccccchhHHhhccccCc-EEEEEEeCCCCCccccccccCccEE
Q 017018 98 VSESDFF----LRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDF-QIMLFHYDGQTSQWDEFEWSKSAIH 172 (379)
Q Consensus 98 ~~~sd~~----l~~lwg~p~~~~~~~~kyLv~~~VG~~qk~~Vd~~v~kf~~~F-~v~LfhYDG~~~~w~d~~Ws~~aih 172 (379)
..-.+++ +|.=||+... ....+..+.+-+|......+++.+++=.+.| ||++..| +|.+..+-+ +.+.
T Consensus 393 Sap~nf~rR~AIR~TWg~~~~--~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF---~DsY~NLTl--Ktl~ 465 (636)
T PLN03133 393 STANNFKRRMAVRRTWMQYDA--VRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPF---VDYYSLITW--KTLA 465 (636)
T ss_pred CCcccHHHHHHHHHhhccccc--cCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEee---echhhhhHH--HHHH
Confidence 3344554 4567997432 1122355557778766666777776533444 8888766 344433311 1111
Q ss_pred EEEeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCccee
Q 017018 173 VSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVH 252 (379)
Q Consensus 173 v~~~kqtKWw~akRfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vH 252 (379)
..||-.+ ....+||+--|||+-|.. .++++..++.. .++ .| ++-+-. .+...+
T Consensus 466 ------~~~wa~~-------c~~akFilK~DDDvFVnv---~~Ll~~L~~~~--~~~-~L----y~G~v~----~~~~Pi 518 (636)
T PLN03133 466 ------ICIFGTE-------VVSAKYVMKTDDDAFVRV---DEVLASLKRTN--VSH-GL----LYGLIN----SDSQPH 518 (636)
T ss_pred ------HHHHHHh-------CCCceEEEEcCCceEEcH---HHHHHHHHhcC--CCC-ce----EEEEec----cCCCcc
Confidence 1234321 235899999999999954 45555544321 111 11 110111 011111
Q ss_pred eeeccCCCCC-C-----CCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchhh-HhhhHhhc
Q 017018 253 KVTEEKPGWC-S-----DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLD-FALRRCVE 312 (379)
Q Consensus 253 r~~~~~~g~C-~-----~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLD-f~~~~c~~ 312 (379)
|. ....|. + ....|||+ -.++-|+|++..+.+....+...+.=+.+| -..+.|+.
T Consensus 519 Rd--~~sKWYVs~~eyp~~~YPpYa---sG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~ 580 (636)
T PLN03133 519 RN--PDSKWYISPEEWPEETYPPWA---HGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIA 580 (636)
T ss_pred cC--CCCCCCCCHHHCCCCCCCCCC---CcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHH
Confidence 10 011121 1 23456654 477789999999887654332233344454 56778875
No 61
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.52 E-value=1.1e+02 Score=28.23 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=25.4
Q ss_pred ccCccEEEEecccccCCCCChHHHHHHHHH
Q 017018 193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKK 222 (379)
Q Consensus 193 va~YDYIflwDDDL~vd~f~i~ry~~Ivr~ 222 (379)
.+.+|||++.|.|..++.-.+.++.+.+.+
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~ 100 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDK 100 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHh
Confidence 468999999999999988888888877643
No 62
>PLN02867 Probable galacturonosyltransferase
Probab=20.39 E-value=43 Score=36.48 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=28.8
Q ss_pred cccCcccccCccEEEEecccccCCCCChHHHHHH
Q 017018 186 RFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMEL 219 (379)
Q Consensus 186 RfLHPdiva~YDYIflwDDDL~vd~f~i~ry~~I 219 (379)
||+=||++.++|-|...|+|+-|.. ++..++++
T Consensus 335 RflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 335 RIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 4555999999999999999999987 88888875
Done!