Query 017019
Match_columns 379
No_of_seqs 137 out of 799
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02859 AMPKbeta_GBD_like AMP- 99.9 2.4E-24 5.3E-29 169.5 9.6 78 287-377 1-79 (79)
2 cd02861 E_set_proteins_like E 99.8 1E-18 2.3E-23 137.0 8.9 76 288-376 2-81 (82)
3 KOG1616 Protein involved in Sn 99.6 1.2E-15 2.6E-20 146.6 7.8 84 286-379 78-162 (289)
4 cd02858 Esterase_N_term Estera 99.3 1.9E-11 4.2E-16 97.3 9.2 76 288-376 6-84 (85)
5 cd02688 E_set E or "early" set 99.0 3.4E-09 7.3E-14 79.1 7.9 70 288-369 4-75 (83)
6 cd02854 Glycogen_branching_enz 98.5 2.3E-07 5E-12 76.8 7.3 68 288-367 5-86 (99)
7 PF02922 CBM_48: Carbohydrate- 98.5 1.1E-07 2.3E-12 73.6 3.7 59 288-357 11-74 (85)
8 cd05808 CBM20_alpha_amylase Al 97.9 5.6E-05 1.2E-09 60.0 7.7 66 289-366 2-81 (95)
9 cd02860 Pullulanase_N_term Pul 97.9 4.7E-05 1E-09 61.5 7.2 68 289-370 9-88 (100)
10 cd02855 Glycogen_branching_enz 97.7 0.00029 6.2E-09 56.1 8.6 77 289-376 22-105 (106)
11 PF00686 CBM_20: Starch bindin 97.7 0.00022 4.7E-09 57.4 7.6 58 288-353 2-68 (96)
12 COG0296 GlgB 1,4-alpha-glucan 97.6 9.3E-05 2E-09 79.0 6.3 66 286-363 34-107 (628)
13 cd02856 Glycogen_debranching_e 97.6 0.00023 5E-09 58.1 7.2 53 289-355 10-66 (103)
14 PRK12568 glycogen branching en 97.6 0.00027 5.8E-09 76.6 9.1 68 286-366 136-211 (730)
15 PRK12313 glycogen branching en 97.4 0.00053 1.2E-08 72.1 8.5 65 288-364 38-109 (633)
16 cd05818 CBM20_water_dikinase P 97.4 0.0013 2.9E-08 53.3 8.8 68 288-368 2-81 (92)
17 cd05809 CBM20_beta_amylase Bet 97.3 0.0014 3E-08 53.6 8.6 73 287-368 2-89 (99)
18 cd02852 Isoamylase_N_term Isoa 97.3 0.00078 1.7E-08 56.1 6.7 59 289-358 8-73 (119)
19 PLN02447 1,4-alpha-glucan-bran 97.3 0.00053 1.1E-08 74.7 6.9 61 289-362 115-189 (758)
20 cd05820 CBM20_novamyl Novamyl 97.2 0.0029 6.4E-08 52.3 9.6 70 287-368 2-90 (103)
21 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.0013 2.8E-08 55.6 6.8 55 289-353 2-66 (120)
22 PRK14705 glycogen branching en 97.1 0.0016 3.4E-08 74.3 8.8 66 286-363 636-709 (1224)
23 cd05811 CBM20_glucoamylase Glu 97.1 0.0052 1.1E-07 50.2 9.7 74 287-368 6-93 (106)
24 PRK14706 glycogen branching en 97.1 0.0015 3.2E-08 69.7 8.1 67 287-366 37-111 (639)
25 cd02853 MTHase_N_term Maltooli 97.1 0.0027 5.9E-08 50.2 7.7 72 288-376 8-82 (85)
26 PRK05402 glycogen branching en 97.0 0.0025 5.5E-08 68.4 8.8 65 288-363 131-202 (726)
27 TIGR02402 trehalose_TreZ malto 97.0 0.0019 4E-08 67.3 7.1 70 290-376 1-73 (542)
28 cd05817 CBM20_DSP Dual-specifi 97.0 0.003 6.5E-08 51.8 6.9 44 298-353 13-62 (100)
29 TIGR01515 branching_enzym alph 96.9 0.0034 7.3E-08 66.2 8.3 68 288-367 28-103 (613)
30 cd05467 CBM20 The family 20 ca 96.8 0.0051 1.1E-07 48.5 7.2 53 290-353 2-65 (96)
31 cd05807 CBM20_CGTase CGTase, C 96.8 0.012 2.5E-07 48.2 9.4 74 287-368 2-90 (101)
32 cd05816 CBM20_DPE2_repeat2 Dis 96.8 0.018 3.9E-07 47.0 10.1 67 290-368 2-85 (99)
33 cd05813 CBM20_genethonin_1 Gen 96.7 0.0079 1.7E-07 48.5 7.2 53 289-353 2-62 (95)
34 PLN02316 synthase/transferase 96.6 0.038 8.2E-07 62.5 14.0 64 287-355 328-398 (1036)
35 cd05810 CBM20_alpha_MTH Glucan 96.4 0.022 4.8E-07 46.9 8.4 67 289-367 2-86 (97)
36 PRK05402 glycogen branching en 96.3 0.0087 1.9E-07 64.4 6.8 62 289-363 29-95 (726)
37 cd05815 CBM20_DPE2_repeat1 Dis 95.6 0.039 8.4E-07 45.0 6.4 66 290-364 2-82 (101)
38 TIGR02104 pulA_typeI pullulana 95.4 0.047 1E-06 57.6 7.7 66 289-367 20-95 (605)
39 PLN02316 synthase/transferase 95.1 0.089 1.9E-06 59.6 9.2 99 245-361 119-227 (1036)
40 PRK10439 enterobactin/ferric e 93.7 0.3 6.6E-06 49.5 8.7 83 283-378 34-161 (411)
41 PF03423 CBM_25: Carbohydrate 93.5 0.13 2.8E-06 41.9 4.6 61 289-357 3-74 (87)
42 PF11806 DUF3327: Domain of un 93.4 0.44 9.6E-06 41.2 7.9 79 288-377 2-111 (122)
43 cd05806 CBM20_laforin Laforin 93.3 0.78 1.7E-05 39.6 9.2 54 295-353 12-74 (112)
44 TIGR02100 glgX_debranch glycog 93.2 0.21 4.5E-06 54.1 6.9 55 289-357 15-75 (688)
45 PRK03705 glycogen debranching 92.9 0.23 5.1E-06 53.6 6.6 55 289-357 20-78 (658)
46 PLN02950 4-alpha-glucanotransf 92.8 0.74 1.6E-05 51.8 10.5 71 286-368 151-237 (909)
47 TIGR02102 pullulan_Gpos pullul 91.6 0.44 9.6E-06 54.6 7.2 65 289-365 328-407 (1111)
48 PLN02950 4-alpha-glucanotransf 90.5 1.5 3.2E-05 49.4 9.8 68 288-364 9-91 (909)
49 TIGR02103 pullul_strch alpha-1 90.0 0.76 1.7E-05 51.7 7.1 68 288-367 135-216 (898)
50 cd02857 CD_pullulan_degrading_ 89.6 1.8 3.8E-05 34.9 7.2 58 288-353 16-79 (116)
51 PLN02960 alpha-amylase 88.5 0.46 1E-05 53.4 4.0 59 289-354 129-198 (897)
52 PRK14510 putative bifunctional 83.3 3.5 7.7E-05 47.8 7.8 56 288-357 23-84 (1221)
53 PLN02877 alpha-amylase/limit d 70.3 12 0.00027 42.8 7.2 52 288-354 222-280 (970)
54 PF15290 Syntaphilin: Golgi-lo 63.3 24 0.00052 35.8 6.9 12 297-308 189-200 (305)
55 KOG3990 Uncharacterized conser 63.0 11 0.00024 37.8 4.5 31 220-250 230-260 (305)
56 PF02903 Alpha-amylase_N: Alph 62.5 17 0.00036 30.5 5.0 67 289-363 22-100 (120)
57 PLN03244 alpha-amylase; Provis 61.4 8.7 0.00019 43.5 3.9 59 290-354 133-201 (872)
58 PF03370 CBM_21: Putative phos 60.7 27 0.00058 29.5 5.9 68 289-356 22-99 (113)
59 COG3794 PetE Plastocyanin [Ene 59.4 27 0.00059 31.2 5.9 53 284-350 58-111 (128)
60 KOG0470 1,4-alpha-glucan branc 59.1 11 0.00024 42.2 4.1 43 290-343 115-159 (757)
61 PF09726 Macoilin: Transmembra 55.5 37 0.00079 37.7 7.3 71 216-286 546-654 (697)
62 PF08317 Spc7: Spc7 kinetochor 50.2 1.5E+02 0.0032 29.4 10.0 54 220-273 207-270 (325)
63 KOG2264 Exostosin EXT1L [Signa 49.0 19 0.00041 39.9 3.8 50 224-273 116-165 (907)
64 PF01357 Pollen_allerg_1: Poll 46.7 35 0.00075 27.6 4.2 58 288-360 14-77 (82)
65 PF13473 Cupredoxin_1: Cupredo 45.3 48 0.001 26.9 4.9 18 333-350 73-91 (104)
66 TIGR03503 conserved hypothetic 45.2 47 0.001 34.6 5.8 25 332-356 169-195 (374)
67 PF05524 PEP-utilisers_N: PEP- 40.7 85 0.0018 26.2 5.8 43 232-274 31-80 (123)
68 TIGR02375 pseudoazurin pseudoa 40.3 93 0.002 27.0 6.1 16 288-303 23-38 (116)
69 PF14347 DUF4399: Domain of un 39.8 46 0.001 27.7 4.0 34 332-366 49-82 (87)
70 PF11896 DUF3416: Domain of un 39.1 49 0.0011 31.0 4.5 40 308-360 55-99 (187)
71 PRK10785 maltodextrin glucosid 37.8 1.2E+02 0.0025 32.7 7.5 61 288-356 21-87 (598)
72 TIGR02231 conserved hypothetic 37.3 3E+02 0.0065 28.8 10.3 37 223-259 72-108 (525)
73 PF07495 Y_Y_Y: Y_Y_Y domain; 36.9 34 0.00074 25.1 2.5 25 337-361 30-58 (66)
74 KOG1263 Multicopper oxidases [ 36.4 42 0.00091 36.4 4.1 37 332-368 96-136 (563)
75 PF11629 Mst1_SARAH: C termina 36.0 59 0.0013 25.2 3.7 35 248-282 13-48 (49)
76 PRK11637 AmiB activator; Provi 35.5 1.2E+02 0.0026 30.8 7.0 8 263-270 112-119 (428)
77 PRK10093 primosomal replicatio 35.3 44 0.00095 31.4 3.5 70 186-261 81-154 (171)
78 KOG0963 Transcription factor/C 34.5 94 0.002 34.5 6.3 73 222-294 278-363 (629)
79 PRK11637 AmiB activator; Provi 34.1 1.1E+02 0.0025 31.1 6.5 29 222-250 75-103 (428)
80 PF11797 DUF3324: Protein of u 33.4 1.7E+02 0.0038 25.6 6.8 25 341-365 102-129 (140)
81 TIGR02657 amicyanin amicyanin. 33.1 98 0.0021 24.5 4.7 48 289-350 20-69 (83)
82 TIGR03102 halo_cynanin halocya 32.7 1.3E+02 0.0028 26.2 5.8 17 333-350 83-99 (115)
83 PF12777 MT: Microtubule-bindi 32.7 72 0.0016 31.8 4.8 65 231-295 230-297 (344)
84 TIGR00998 8a0101 efflux pump m 32.6 2.1E+02 0.0046 27.3 7.8 9 290-298 205-213 (334)
85 TIGR01843 type_I_hlyD type I s 30.2 4.6E+02 0.0099 25.5 9.7 22 263-284 248-269 (423)
86 KOG3564 GTPase-activating prot 29.5 1.5E+02 0.0032 32.6 6.6 52 219-270 25-79 (604)
87 PF13620 CarboxypepD_reg: Carb 29.4 99 0.0021 23.3 4.1 26 331-357 35-60 (82)
88 PF12325 TMF_TATA_bd: TATA ele 29.3 2.4E+02 0.0052 24.9 6.9 33 218-250 12-44 (120)
89 PF08286 Spc24: Spc24 subunit 29.2 7.2 0.00016 33.3 -2.4 80 235-319 19-104 (118)
90 PF10648 Gmad2: Immunoglobulin 28.3 3E+02 0.0065 22.8 7.0 26 332-357 56-88 (88)
91 PF06476 DUF1090: Protein of u 28.1 1.6E+02 0.0034 25.8 5.5 71 207-277 28-112 (115)
92 PF00038 Filament: Intermediat 27.1 2.7E+02 0.006 26.6 7.5 59 223-281 217-275 (312)
93 PF06785 UPF0242: Uncharacteri 27.0 82 0.0018 33.0 4.1 75 208-283 135-209 (401)
94 PRK02710 plastocyanin; Provisi 27.0 1.7E+02 0.0037 24.8 5.5 14 335-349 89-102 (119)
95 PF04985 Phage_tube: Phage tai 26.9 2.6E+02 0.0056 24.9 6.8 63 288-367 78-151 (167)
96 PF05546 She9_MDM33: She9 / Md 26.9 2E+02 0.0043 28.0 6.4 66 208-273 14-83 (207)
97 TIGR01843 type_I_hlyD type I s 26.1 2.5E+02 0.0054 27.3 7.1 24 275-298 253-280 (423)
98 PF04484 DUF566: Family of unk 25.9 1.6E+02 0.0035 29.6 5.9 73 208-283 130-209 (311)
99 KOG0045 Cytosolic Ca2+-depende 25.9 67 0.0014 35.2 3.5 27 342-368 114-143 (612)
100 PRK09039 hypothetical protein; 25.7 2.2E+02 0.0049 28.7 6.9 39 224-262 146-184 (343)
101 PF08308 PEGA: PEGA domain; I 25.0 2.1E+02 0.0045 21.5 5.1 40 291-355 5-45 (71)
102 PF04977 DivIC: Septum formati 24.4 2.1E+02 0.0045 21.7 5.1 26 227-252 22-47 (80)
103 PF04234 CopC: CopC domain; I 24.3 3E+02 0.0064 22.5 6.2 59 286-356 18-86 (97)
104 PRK00888 ftsB cell division pr 24.2 2E+02 0.0044 24.5 5.4 34 223-256 28-61 (105)
105 PF05738 Cna_B: Cna protein B- 24.2 2E+02 0.0044 21.3 4.9 30 331-361 24-55 (70)
106 PF12761 End3: Actin cytoskele 23.8 1.3E+02 0.0027 29.0 4.5 31 217-247 91-121 (195)
107 PF04880 NUDE_C: NUDE protein, 23.7 29 0.00063 32.3 0.2 48 205-258 2-52 (166)
108 PF02183 HALZ: Homeobox associ 23.6 2.8E+02 0.0061 20.6 5.4 40 221-260 4-43 (45)
109 PF00127 Copper-bind: Copper b 23.3 2.3E+02 0.0051 22.9 5.4 18 288-305 25-43 (99)
110 PF04859 DUF641: Plant protein 22.5 2.6E+02 0.0056 25.3 6.0 36 220-255 92-127 (131)
111 smart00787 Spc7 Spc7 kinetocho 21.9 2.4E+02 0.0051 28.5 6.2 12 262-273 254-265 (312)
112 KOG0245 Kinesin-like protein [ 21.8 1.4E+02 0.0031 35.3 5.1 62 220-281 366-443 (1221)
113 TIGR03769 P_ac_wall_RPT actino 21.8 1E+02 0.0022 22.5 2.7 19 343-361 11-34 (41)
114 PF07898 DUF1676: Protein of u 21.5 1.1E+02 0.0023 24.9 3.2 57 94-167 13-69 (106)
115 PRK11377 dihydroxyacetone kina 21.3 2E+02 0.0042 30.7 5.7 40 235-274 280-326 (473)
116 COG4558 ChuT ABC-type hemin tr 21.3 1.1E+02 0.0024 31.2 3.7 46 264-309 152-200 (300)
117 PRK09039 hypothetical protein; 21.3 4.9E+02 0.011 26.4 8.3 56 225-280 126-184 (343)
118 PF04201 TPD52: Tumour protein 20.5 1.2E+02 0.0026 28.5 3.5 31 213-245 36-66 (162)
119 TIGR01417 PTS_I_fam phosphoeno 20.1 2E+02 0.0044 31.0 5.7 37 237-273 38-81 (565)
No 1
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.91 E-value=2.4e-24 Score=169.52 Aligned_cols=78 Identities=35% Similarity=0.699 Sum_probs=71.7
Q ss_pred ceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCEeeeCCCCCee
Q 017019 287 LEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 366 (379)
Q Consensus 287 LkpVTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIVDGeW~~DPdnPtV 366 (379)
+++|+|+|+++|++|+|+|+|++|++.++|.+. ..| |++++.||||.|+|||+|||+|++||+.|++
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~------------~~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~ 67 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKS------------GKG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTE 67 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceEC------------CCC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCcc
Confidence 368999999999999999999999988999984 344 9999999999999999999999999999999
Q ss_pred cC-CCccceEEE
Q 017019 367 TK-GGICNNILR 377 (379)
Q Consensus 367 tD-gGnvNNVLe 377 (379)
.+ .|+.||+|.
T Consensus 68 ~d~~G~~NN~i~ 79 (79)
T cd02859 68 TDDEGNVNNVID 79 (79)
T ss_pred CCCCCcEeeeEC
Confidence 87 699999984
No 2
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=1e-18 Score=137.00 Aligned_cols=76 Identities=39% Similarity=0.707 Sum_probs=67.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCEee-eCCCCCe
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWK-VDPQRES 365 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIVDGeW~-~DPdnPt 365 (379)
.+|+|+|.++ +++|+|+|+|++|+ .++|.+. ..|.|++++.|+||.|+|||+|||.|. .||.++.
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~------------~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~ 68 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMERE------------GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAA 68 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEEC------------CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCc
Confidence 3799999998 69999999999998 5788873 579999999999999999999999998 9999997
Q ss_pred ec-C-CCccceEE
Q 017019 366 VT-K-GGICNNIL 376 (379)
Q Consensus 366 Vt-D-gGnvNNVL 376 (379)
.. + .|+.|++|
T Consensus 69 ~~~~~~g~~n~v~ 81 (82)
T cd02861 69 YVDDGFGGKNAVF 81 (82)
T ss_pred eecCCCCccceEc
Confidence 65 4 48888887
No 3
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.2e-15 Score=146.56 Aligned_cols=84 Identities=38% Similarity=0.556 Sum_probs=75.9
Q ss_pred CceEEEEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCEeeeCCCCCe
Q 017019 286 GLEVVEIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRES 365 (379)
Q Consensus 286 gLkpVTF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIVDGeW~~DPdnPt 365 (379)
...+|+|+|.++++.|+|.|+|++|...++|.+.. +..|.|++++.|++|.|+|||+|||+|++|++.|+
T Consensus 78 ~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~----------~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pt 147 (289)
T KOG1616|consen 78 QGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSG----------KNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPT 147 (289)
T ss_pred cCCceEEEecCCCceEEEecccccccccccceecC----------CCcccceeeEecCCceEEEEEecCCceecCCCCcc
Confidence 34799999999999999999999999999998742 24556999999999999999999999999999999
Q ss_pred ecC-CCccceEEEeC
Q 017019 366 VTK-GGICNNILRVI 379 (379)
Q Consensus 366 VtD-gGnvNNVLeVe 379 (379)
+++ .|+.||++.|.
T Consensus 148 a~d~~Gn~~N~i~v~ 162 (289)
T KOG1616|consen 148 AEDSLGNLNNILEVQ 162 (289)
T ss_pred cccccCCcccceEec
Confidence 998 69999999984
No 4
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=1.9e-11 Score=97.29 Aligned_cols=76 Identities=25% Similarity=0.397 Sum_probs=64.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCEeeeCCCCCe
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWKVDPQRES 365 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGeW~~DPdnPt 365 (379)
..|+|+..++ |++|.|.|+|++|.. .+|+++ +.|.|++++. |.+|.|.|+|+|||.|+.||..+.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~------------~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD------------EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCcc-EeCeEC------------CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCc
Confidence 4789999987 999999999998874 689874 6899999984 889999999999999999999999
Q ss_pred ecC-CCccceEE
Q 017019 366 VTK-GGICNNIL 376 (379)
Q Consensus 366 VtD-gGnvNNVL 376 (379)
... .+..-|++
T Consensus 73 ~~~~~~~~~~~~ 84 (85)
T cd02858 73 TKPGRQVDTSGV 84 (85)
T ss_pred eeecccccceee
Confidence 874 45554543
No 5
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.95 E-value=3.4e-09 Score=79.14 Aligned_cols=70 Identities=30% Similarity=0.478 Sum_probs=60.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCC-eEEEEEEEECCEeeeCCCCCe
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP-GTYEIKFIVDGQWKVDPQRES 365 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPP-GrYEYKFIVDGeW~~DPdnPt 365 (379)
..|+|++.++ ++.|.|.+.|++|...++|.+. ..|.|.+.+.+.+ |.|.|+|.|||.|..++.++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~------------~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~ 71 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV------------EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPK 71 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEEC------------CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChh
Confidence 4789999987 8999999999997667889864 5799999999887 999999999999999998866
Q ss_pred ecCC
Q 017019 366 VTKG 369 (379)
Q Consensus 366 VtDg 369 (379)
..+.
T Consensus 72 ~~~~ 75 (83)
T cd02688 72 ADEG 75 (83)
T ss_pred hhcC
Confidence 6654
No 6
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.55 E-value=2.3e-07 Score=76.81 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=53.1
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEEe--------CCe-EEEEEEEE-CC
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLWL--------YPG-TYEIKFIV-DG 355 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~L--------PPG-rYEYKFIV-DG 355 (379)
..++|+..++ |++|+|.|+||+|+.. .+|.+. +.|+|++++.. +.| .|.|++.. ||
T Consensus 5 ~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~------------~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G 72 (99)
T cd02854 5 GGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD------------EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSG 72 (99)
T ss_pred CeEEEEEECCCCCEEEEEccCCCCCCcCcccEEC------------CCCEEEEEECCcccccccCCCCCEEEEEEEeCCC
Confidence 4688999997 9999999999999864 678874 68999999863 566 67777666 88
Q ss_pred Ee--eeCCCCCeec
Q 017019 356 QW--KVDPQRESVT 367 (379)
Q Consensus 356 eW--~~DPdnPtVt 367 (379)
+| +.||-...+.
T Consensus 73 ~~~~~~DPyA~~~~ 86 (99)
T cd02854 73 EWIDRIPAWIKYVT 86 (99)
T ss_pred CEEEEcCcceeEEE
Confidence 86 5777665544
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.49 E-value=1.1e-07 Score=73.57 Aligned_cols=59 Identities=27% Similarity=0.435 Sum_probs=47.4
Q ss_pred eEEEEEEecC-CceEEEEeeeCC-Cccc-cccCCCCCCCccccccccCCCcEEEEEE--eCCeEEEEEEEECCEe
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNG-WHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGTYEIKFIVDGQW 357 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNn-W~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~--LPPGrYEYKFIVDGeW 357 (379)
..++|+..++ |++|.|.|.|++ |... ++|.+. ...|+|++++. +++|.+.|+|.|||..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-----------~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-----------DDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-----------CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-----------CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5799999987 999999999999 8754 788831 37999999998 8889888888887653
No 8
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.90 E-value=5.6e-05 Score=60.03 Aligned_cols=66 Identities=26% Similarity=0.536 Sum_probs=49.1
Q ss_pred EEEEEEec---CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC-
Q 017019 289 VVEIQYSG---DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG- 355 (379)
Q Consensus 289 pVTF~W~g---~AkeVeVaGS---FNnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---DG- 355 (379)
+|+|.... .|+.|+|+|+ +.+|++. ++|... ..+.|++++.||+| .++|||++ +|
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~------------~~~~W~~~v~l~~~~~~eYKy~~~~~~~~ 69 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA------------TYPVWSGTVDLPAGTAIEYKYIKKDGSGT 69 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC------------CCCCEEEEEEeCCCCeEEEEEEEECCCCc
Confidence 56676654 3899999996 6899864 577652 57899999999987 79999996 24
Q ss_pred -EeeeCCCCCee
Q 017019 356 -QWKVDPQRESV 366 (379)
Q Consensus 356 -eW~~DPdnPtV 366 (379)
.|...+++-..
T Consensus 70 ~~WE~~~nr~~~ 81 (95)
T cd05808 70 VTWESGPNRTAT 81 (95)
T ss_pred EEEecCCCEEEE
Confidence 47766644333
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.88 E-value=4.7e-05 Score=61.54 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=53.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc-----cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCE-----
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWH-----HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ----- 356 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~-----~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGe----- 356 (379)
.++|+..++ |++|.|.. |++|. ..++|.+ ...|+|++.+. +.+|.+ |+|.|+|.
T Consensus 9 ~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~------------~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~ 74 (100)
T cd02860 9 KTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR------------GENGVWSVTLDGDLEGYY-YLYEVKVYKGETN 74 (100)
T ss_pred CEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec------------CCCCEEEEEeCCccCCcE-EEEEEEEeceEEE
Confidence 588988887 99999988 88886 3467876 37999999986 667765 88888876
Q ss_pred eeeCCCCCeecCCC
Q 017019 357 WKVDPQRESVTKGG 370 (379)
Q Consensus 357 W~~DPdnPtVtDgG 370 (379)
...||-...+...|
T Consensus 75 ~~~DPyA~~~~~~~ 88 (100)
T cd02860 75 EVVDPYAKALSANG 88 (100)
T ss_pred EEcCcccEeEeeCC
Confidence 78888877766433
No 10
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.68 E-value=0.00029 Score=56.14 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEEC-CEe--eeCC
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWHH-RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVDP 361 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~~-~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPG-rYEYKFIVD-GeW--~~DP 361 (379)
.++|+...+ |+.|.|.|+|++|.. ..+|.+. ...|.|.+.+. +++| .|.|++..+ |.| +.||
T Consensus 22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~-----------~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DP 90 (106)
T cd02855 22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRR-----------GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADP 90 (106)
T ss_pred CEEEEEECCCCCEEEEEEECCCCCCcceecEEC-----------CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCC
Confidence 478888876 999999999999964 3578764 24899999886 6677 455544444 333 4566
Q ss_pred CCCeecCCCccceEE
Q 017019 362 QRESVTKGGICNNIL 376 (379)
Q Consensus 362 dnPtVtDgGnvNNVL 376 (379)
-..-+......++|+
T Consensus 91 Ya~~~~~~~~~~~~~ 105 (106)
T cd02855 91 YAFYSELRPGTASIV 105 (106)
T ss_pred CceeeEeCCCCeEEe
Confidence 554444333345443
No 11
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.65 E-value=0.00022 Score=57.45 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=45.8
Q ss_pred eEEEEEEec---CCceEEEEeeeC---CCcc--ccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 017019 288 EVVEIQYSG---DGEIVEVAGSFN---GWHH--RIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 353 (379)
Q Consensus 288 kpVTF~W~g---~AkeVeVaGSFN---nW~~--~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV 353 (379)
+.|+|+... .++.|+|+||.. +|++ .++|.... +......|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--------~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNE--------GTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBES--------SSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhcccccccc--------CCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 468888855 389999999996 8997 47787531 01246899999999998 79999998
No 12
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.61 E-value=9.3e-05 Score=78.98 Aligned_cols=66 Identities=26% Similarity=0.464 Sum_probs=53.0
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCE-----e
Q 017019 286 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQ-----W 357 (379)
Q Consensus 286 gLkpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGe-----W 357 (379)
|-..|+|+..++ ++.|.|.|+||+|+.. .+|... ++.|.|.+++. ++|| +.|||.+++. +
T Consensus 34 g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-----------~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~ 101 (628)
T COG0296 34 GVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-----------KESGIWELFVPGAPPG-TRYKYELIDPSGQLRL 101 (628)
T ss_pred CCCceEEEEECCCCCeEEEEeecCCccceecccccC-----------CCCceEEEeccCCCCC-CeEEEEEeCCCCceee
Confidence 567899999998 9999999999999974 334331 36899999998 9999 8999998653 3
Q ss_pred eeCCCC
Q 017019 358 KVDPQR 363 (379)
Q Consensus 358 ~~DPdn 363 (379)
+.||-.
T Consensus 102 ~~DP~a 107 (628)
T COG0296 102 KADPYA 107 (628)
T ss_pred ccCchh
Confidence 666644
No 13
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.60 E-value=0.00023 Score=58.10 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=42.5
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECC
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG 355 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDG 355 (379)
.++|+..++ |++|.|.. |++|. ..++|.+. ..|+|.+.+. +.+|. .|+|.|||
T Consensus 10 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~------------~~GvW~~~v~~~~~g~-~Y~y~i~g 66 (103)
T cd02856 10 GCNFAVHSENATRIELCL-FDEDGSETRLPLTEE------------YGGVWHGFLPGIKAGQ-RYGFRVHG 66 (103)
T ss_pred CeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc------------cCCEEEEEECCCCCCC-EEEEEECC
Confidence 478988887 99999998 66664 34678763 6899999984 77776 79999999
No 14
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.57 E-value=0.00027 Score=76.65 Aligned_cols=68 Identities=28% Similarity=0.485 Sum_probs=52.7
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEE---CCEee-
Q 017019 286 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIV---DGQWK- 358 (379)
Q Consensus 286 gLkpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIV---DGeW~- 358 (379)
|..-|+|+..++ |++|.|+|+||+|..+ .+|.+ ...|+|++.+. +.+|. .|||.| ||+|.
T Consensus 136 g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~------------~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~ 202 (730)
T PRK12568 136 EVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQ------------RIGGFWELFLPRVEAGA-RYKYAITAADGRVLL 202 (730)
T ss_pred CCCcEEEEEECCCCCEEEEEEecCCCCccceeccc------------CCCCEEEEEECCCCCCC-EEEEEEEcCCCeEee
Confidence 455789999998 9999999999999864 57875 36999999985 88883 566666 78764
Q ss_pred -eCCCCCee
Q 017019 359 -VDPQRESV 366 (379)
Q Consensus 359 -~DPdnPtV 366 (379)
.||-....
T Consensus 203 k~DPYA~~~ 211 (730)
T PRK12568 203 KADPVARQT 211 (730)
T ss_pred cCCCcceEe
Confidence 67755443
No 15
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.40 E-value=0.00053 Score=72.10 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=49.7
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEE-CCEe--eeC
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIV-DGQW--KVD 360 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPG-rYEYKFIV-DGeW--~~D 360 (379)
..|+|+..++ |++|+|.|+|++|... .+|.+. ..|+|.+++. +++| .|.|++.. ||.| ..|
T Consensus 38 ~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~------------~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 105 (633)
T PRK12313 38 KGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR------------ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKID 105 (633)
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCccccccccc------------CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCC
Confidence 4799999987 9999999999999865 578763 6899999997 5555 67777754 5775 455
Q ss_pred CCCC
Q 017019 361 PQRE 364 (379)
Q Consensus 361 PdnP 364 (379)
|-..
T Consensus 106 Pya~ 109 (633)
T PRK12313 106 PFAF 109 (633)
T ss_pred CceE
Confidence 5443
No 16
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.37 E-value=0.0013 Score=53.29 Aligned_cols=68 Identities=26% Similarity=0.437 Sum_probs=51.2
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC--
Q 017019 288 EVVEIQYSG---DGEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG-- 355 (379)
Q Consensus 288 kpVTF~W~g---~AkeVeVaGSF---NnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---DG-- 355 (379)
..|+|+.+. .|+.++|+|+- .+|++..+|.. ..+.|++++.+|+| .++|||++ ||
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~-------------~~~~W~~~~~l~~~~~ieyKy~~~~~~~~v 68 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNW-------------TENGWVCDLELDGGELVEYKFVIVKRDGSV 68 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCcccc-------------CCCCEEEEEEeCCCCcEEEEEEEEcCCCCE
Confidence 356777765 39999999988 59997777764 24569999999988 79999999 44
Q ss_pred EeeeCCCCCeecC
Q 017019 356 QWKVDPQRESVTK 368 (379)
Q Consensus 356 eW~~DPdnPtVtD 368 (379)
.|...++.-....
T Consensus 69 ~WE~g~Nr~~~~~ 81 (92)
T cd05818 69 IWEGGNNRVLELP 81 (92)
T ss_pred EEEeCCCEEEEcc
Confidence 4877766544443
No 17
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.34 E-value=0.0014 Score=53.64 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=50.7
Q ss_pred ceEEEEEEec----CCceEEEEe---eeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---C
Q 017019 287 LEVVEIQYSG----DGEIVEVAG---SFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 354 (379)
Q Consensus 287 LkpVTF~W~g----~AkeVeVaG---SFNnW~~~I-pM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---D 354 (379)
.++|+|+... .|+.|+|+| .+.+|++.. +|..-. ....+.|++++.||+| .++|||++ |
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~---------~~~~~~W~~~~~lp~~~~veyKyv~~~~~ 72 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYY---------NSHSNDWRGTVHLPAGRNIEFKAIKKSKD 72 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhcccc---------CCCCCCEEEEEEecCCCcEEEEEEEEcCC
Confidence 4688999843 389999999 567998641 232210 0246889999999999 69999999 4
Q ss_pred C---EeeeCCCCCeecC
Q 017019 355 G---QWKVDPQRESVTK 368 (379)
Q Consensus 355 G---eW~~DPdnPtVtD 368 (379)
| .|...+++-....
T Consensus 73 ~~~~~WE~g~nr~~~~p 89 (99)
T cd05809 73 GTNKSWQGGQQSWYPVP 89 (99)
T ss_pred CCeeEEecCCCeeEECC
Confidence 4 3876666544333
No 18
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.29 E-value=0.00078 Score=56.08 Aligned_cols=59 Identities=25% Similarity=0.427 Sum_probs=44.7
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc---c--ccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCEee
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWH---H--RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQWK 358 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~---~--~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGeW~ 358 (379)
.++|+..++ |++|.|.. |++|. + .++|.+.. .+..|+|++.+. +.+|. .|+|.|+|.|.
T Consensus 8 g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~---------~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 8 GVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSV---------NRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred CEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcc---------cccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 588988887 99999998 88886 2 35676531 124799999985 78886 69999998653
No 19
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.26 E-value=0.00053 Score=74.70 Aligned_cols=61 Identities=18% Similarity=0.425 Sum_probs=46.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-------eCCeEEEEEEEEC---CE
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-------LYPGTYEIKFIVD---GQ 356 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-------LPPGrYEYKFIVD---Ge 356 (379)
.++|+..++ |++|+|+|+||+|+.. .+|.+. +.|+|++.+. +++|. .|||.|. |.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~------------~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~ 181 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN------------EFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGR 181 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC------------CCCEEEEEECCccccccCCCCC-EEEEEEEeCCCc
Confidence 688999887 9999999999999864 578763 6899999985 45563 5666663 54
Q ss_pred e--eeCCC
Q 017019 357 W--KVDPQ 362 (379)
Q Consensus 357 W--~~DPd 362 (379)
| +.||-
T Consensus 182 ~~~r~dpy 189 (758)
T PLN02447 182 WVDRIPAW 189 (758)
T ss_pred EEeecCch
Confidence 3 55663
No 20
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.24 E-value=0.0029 Score=52.29 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=52.5
Q ss_pred ceEEEEEEec-----CCceEEEEeee---CCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEE
Q 017019 287 LEVVEIQYSG-----DGEIVEVAGSF---NGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFI 352 (379)
Q Consensus 287 LkpVTF~W~g-----~AkeVeVaGSF---NnW~~~I-----pM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFI 352 (379)
.++|+|+... .|+.|+|+|+- .+|++.. +|.. .....|.+++.||.| ..+|||+
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~------------~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC------------PNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc------------CCCCCEEEEEEcCCCCcEEEEEE
Confidence 3689999863 38999999987 4898632 4442 245789999999999 7999999
Q ss_pred E---CC--EeeeCCCCCeecC
Q 017019 353 V---DG--QWKVDPQRESVTK 368 (379)
Q Consensus 353 V---DG--eW~~DPdnPtVtD 368 (379)
+ || .|...+++-....
T Consensus 70 ~~~~~g~v~WE~g~Nr~~~~p 90 (103)
T cd05820 70 KAPADGTGTWEGGSNHAYTTP 90 (103)
T ss_pred EECCCCCEEEEeCCCEeEECC
Confidence 8 55 3877777655554
No 21
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.16 E-value=0.0013 Score=55.57 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=43.8
Q ss_pred EEEEEEec----CCceEEEEee---eCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 017019 289 VVEIQYSG----DGEIVEVAGS---FNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 353 (379)
Q Consensus 289 pVTF~W~g----~AkeVeVaGS---FNnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV 353 (379)
.|+|+... .++.|+|+|+ +.+|++. ++|.... ...+.|++++.||++ .++|||++
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~----------~~~~~W~~~v~lp~~~~veYkY~~ 66 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED----------DDCNLWKASIELPRGVDFQYRYFV 66 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC----------CcCCccEEEEEECCCCeEEEEEEE
Confidence 46777765 3899999999 8899854 5776520 146889999999998 89999999
No 22
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.11 E-value=0.0016 Score=74.29 Aligned_cols=66 Identities=33% Similarity=0.602 Sum_probs=50.1
Q ss_pred CceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC---CEe--
Q 017019 286 GLEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQW-- 357 (379)
Q Consensus 286 gLkpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVD---GeW-- 357 (379)
+...|.|+..++ |+.|.|.|+||+|..+ .+|.+. ...|+|++.+. +.+|. .|||.|+ |.|
T Consensus 636 ~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-----------~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~ 703 (1224)
T PRK14705 636 DVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-----------GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVE 703 (1224)
T ss_pred CCCeEEEEEECCCCCEEEEEEEecCCCCCcccceEC-----------CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEe
Confidence 345788999987 9999999999999865 567653 35899999985 88995 5777774 555
Q ss_pred eeCCCC
Q 017019 358 KVDPQR 363 (379)
Q Consensus 358 ~~DPdn 363 (379)
+.||-.
T Consensus 704 k~DPyA 709 (1224)
T PRK14705 704 KADPLA 709 (1224)
T ss_pred cCCccc
Confidence 455533
No 23
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.11 E-value=0.0052 Score=50.19 Aligned_cols=74 Identities=28% Similarity=0.563 Sum_probs=51.6
Q ss_pred ceEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---C
Q 017019 287 LEVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---D 354 (379)
Q Consensus 287 LkpVTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---D 354 (379)
...|+|.... .|+.|+|+|+- .+|++. ++|.... .+...+.|++++.||+| .++|||++ |
T Consensus 6 ~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~--------~t~~~~~W~~~v~lp~~~~veYKy~~~~~~ 77 (106)
T cd05811 6 TVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQ--------YTSSNPLWSVTIPLPAGTSFEYKFIRKESD 77 (106)
T ss_pred EEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCccccccc--------CccCCCcEEEEEEeCCCCcEEEEEEEEcCC
Confidence 3578887765 38999999987 489864 5675420 01245789999999988 59999996 2
Q ss_pred C--EeeeCCCCCeecC
Q 017019 355 G--QWKVDPQRESVTK 368 (379)
Q Consensus 355 G--eW~~DPdnPtVtD 368 (379)
| .|...++.-....
T Consensus 78 ~~~~WE~~~nr~~~~~ 93 (106)
T cd05811 78 GSVTWESDPNRSYTVP 93 (106)
T ss_pred CcEEEecCCCeEEECC
Confidence 3 4877765444333
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.10 E-value=0.0015 Score=69.72 Aligned_cols=67 Identities=31% Similarity=0.469 Sum_probs=50.5
Q ss_pred ceEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECC---Ee--e
Q 017019 287 LEVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG---QW--K 358 (379)
Q Consensus 287 LkpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDG---eW--~ 358 (379)
...|+|+..++ |++|.|.|+||+|+.. .+|.+. ..|+|++.+. +.+|. .|||.|+| .+ +
T Consensus 37 ~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~------------~~GvW~~~vpg~~~g~-~Yky~I~~~~g~~~~~ 103 (639)
T PRK14706 37 VEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL------------DFGFWGAFVPGARPGQ-RYKFRVTGAAGQTVDK 103 (639)
T ss_pred cccEEEEEECCCCCEEEEEEecCCccccccccccc------------CCCEEEEEECCCCCCC-EEEEEEECCCCCEEec
Confidence 34689999887 9999999999999864 578763 5799999986 56664 68888854 44 6
Q ss_pred eCCCCCee
Q 017019 359 VDPQRESV 366 (379)
Q Consensus 359 ~DPdnPtV 366 (379)
.||-...+
T Consensus 104 ~DPYa~~~ 111 (639)
T PRK14706 104 MDPYGSFF 111 (639)
T ss_pred cCcceEEE
Confidence 66655443
No 25
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.09 E-value=0.0027 Score=50.15 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=51.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC-CEeeeCCCCC
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD-GQWKVDPQRE 364 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVD-GeW~~DPdnP 364 (379)
..++|+..++ |++|.|...+ |. .++|.+. ..|.|++++. + +|. .|+|.|+ |..+.||...
T Consensus 8 ~~~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~------------~~G~W~~~v~~~-~g~-~Y~y~v~~~~~~~DP~a~ 70 (85)
T cd02853 8 GGTRFRLWAPDAKRVTLRLDD--GE-EIPMQRD------------GDGWFEAEVPGA-AGT-RYRYRLDDGTPVPDPASR 70 (85)
T ss_pred CCEEEEEeCCCCCEEEEEecC--CC-cccCccC------------CCcEEEEEeCCC-CCC-eEEEEECCCcCCCCCccc
Confidence 3588998887 9999999643 53 4788763 6899999986 5 775 3666666 5688999887
Q ss_pred eecCCCccceEE
Q 017019 365 SVTKGGICNNIL 376 (379)
Q Consensus 365 tVtDgGnvNNVL 376 (379)
....+.+-.+++
T Consensus 71 ~~~~~~~~~s~v 82 (85)
T cd02853 71 FQPEGVHGPSQV 82 (85)
T ss_pred cCCCCCCCCeEe
Confidence 754433333443
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.99 E-value=0.0025 Score=68.37 Aligned_cols=65 Identities=29% Similarity=0.494 Sum_probs=49.2
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEEC-CEe--eeC
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVD-GQW--KVD 360 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPG-rYEYKFIVD-GeW--~~D 360 (379)
..|+|+..++ |++|.|.|+|++|... .+|.+. ...|+|.+++. +++| .|.|++..+ |.| ..|
T Consensus 131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~D 199 (726)
T PRK05402 131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-----------GESGVWELFIPGLGEGELYKFEILTADGELLLKAD 199 (726)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCCccccceEc-----------CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCC
Confidence 4689999998 9999999999999764 578763 26899999985 7777 677777765 455 444
Q ss_pred CCC
Q 017019 361 PQR 363 (379)
Q Consensus 361 Pdn 363 (379)
|-.
T Consensus 200 PYa 202 (726)
T PRK05402 200 PYA 202 (726)
T ss_pred Cce
Confidence 433
No 27
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.95 E-value=0.0019 Score=67.35 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred EEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECC-EeeeCCCCCee
Q 017019 290 VEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDG-QWKVDPQRESV 366 (379)
Q Consensus 290 VTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDG-eW~~DPdnPtV 366 (379)
|+|+..++ |++|.|.+. + ..++|.+. ..|+|++++. +.+| |.|+|.||| ..+.||-....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~------------~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL------------GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC------------CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 57888887 999999972 3 35789874 6899999996 7888 789999999 78999988775
Q ss_pred cCCCccceEE
Q 017019 367 TKGGICNNIL 376 (379)
Q Consensus 367 tDgGnvNNVL 376 (379)
..+.+..+++
T Consensus 64 ~~~~~~~S~V 73 (542)
T TIGR02402 64 PDGVHGPSQV 73 (542)
T ss_pred ccCCCCCeEE
Confidence 4432323443
No 28
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.95 E-value=0.003 Score=51.79 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=36.5
Q ss_pred CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 017019 298 GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 353 (379)
Q Consensus 298 AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV 353 (379)
|+.|+|+|+- .+|++. ++|.. .....|++++.+|+| .++|||+|
T Consensus 13 Ge~l~v~Gs~~~LG~W~~~~a~~m~~------------~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 13 GEAVYISGNCNQLGNWNPSKAKRMQW------------NEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCEEEEEeCcHHHCCCCccccCcccC------------CCCCCEEEEEEECCCCcEEEEEEE
Confidence 8999999994 689864 56754 246789999999988 69999998
No 29
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.87 E-value=0.0034 Score=66.21 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=50.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC---CE--eee
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHR-IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD---GQ--WKV 359 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~-IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVD---Ge--W~~ 359 (379)
..++|+..++ |++|.|.|+|++|... .+|.+. ...|+|++.+. ..+|. .|+|.|+ |. ++.
T Consensus 28 ~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-----------~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~ 95 (613)
T TIGR01515 28 SGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-----------NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKA 95 (613)
T ss_pred CcEEEEEECCCCCEEEEEEecCCCCCceecceEe-----------cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeC
Confidence 4688999887 9999999999999764 467653 24799999886 56775 4778774 54 477
Q ss_pred CCCCCeec
Q 017019 360 DPQRESVT 367 (379)
Q Consensus 360 DPdnPtVt 367 (379)
||-.-...
T Consensus 96 DPYA~~~~ 103 (613)
T TIGR01515 96 DPYAFYAE 103 (613)
T ss_pred CCCEeeec
Confidence 87654433
No 30
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.84 E-value=0.0051 Score=48.54 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=40.5
Q ss_pred EEEEEec---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCC--e-EEEEEEEE
Q 017019 290 VEIQYSG---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYP--G-TYEIKFIV 353 (379)
Q Consensus 290 VTF~W~g---~AkeVeVaGSFN---nW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPP--G-rYEYKFIV 353 (379)
|+|+... .|+.|+|+|+.. +|++. ++|... ...+.|++++.+|+ | .++|||++
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~-----------~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTS-----------NSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCC-----------CCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4454443 499999999984 89853 667652 12689999999999 7 79999998
No 31
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.82 E-value=0.012 Score=48.23 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=50.9
Q ss_pred ceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---
Q 017019 287 LEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV--- 353 (379)
Q Consensus 287 LkpVTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV--- 353 (379)
.++|+|.... .|+.|+|+|+- .+|++. +.|... ........|++++.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~--------~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~ 73 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFN--------QVVYQYPNWYYDVSVPAGTTIEFKFIKKNG 73 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccc--------cCCCcCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 4678888753 38999999987 489864 222210 001256789999999999 79999998
Q ss_pred CCE--eeeCCCCCeecC
Q 017019 354 DGQ--WKVDPQRESVTK 368 (379)
Q Consensus 354 DGe--W~~DPdnPtVtD 368 (379)
||. |...+++-....
T Consensus 74 ~~~~~WE~g~nr~~~~p 90 (101)
T cd05807 74 DNTVTWESGSNHTYTAP 90 (101)
T ss_pred CCCEEEEeCCCEEEeCC
Confidence 453 877666544444
No 32
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.76 E-value=0.018 Score=47.03 Aligned_cols=67 Identities=25% Similarity=0.560 Sum_probs=48.7
Q ss_pred EEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--EEEEEEEE--C--
Q 017019 290 VEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV--D-- 354 (379)
Q Consensus 290 VTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG--rYEYKFIV--D-- 354 (379)
|+|+... .++.|+|+|+- .+|++. ++|... ....|++++.+|++ .++|||++ +
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~~p~~~~~ieYKyvi~~~~~ 69 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDV------------GFPIWEADIDISKDSFPFEYKYIIANKDS 69 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCC------------CCCcEEEEEEeCCCCccEEEEEEEEeCCC
Confidence 5666654 38999999996 589864 567642 56789999999986 59999998 2
Q ss_pred C--EeeeCCCCCeecC
Q 017019 355 G--QWKVDPQRESVTK 368 (379)
Q Consensus 355 G--eW~~DPdnPtVtD 368 (379)
| .|..-+++-....
T Consensus 70 ~~~~WE~g~nr~~~~p 85 (99)
T cd05816 70 GVVSWENGPNRELSAP 85 (99)
T ss_pred CcEEEEcCCCeEEECC
Confidence 3 3777666554443
No 33
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.66 E-value=0.0079 Score=48.48 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=41.8
Q ss_pred EEEEEEecC----CceEEEEeee---CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE
Q 017019 289 VVEIQYSGD----GEIVEVAGSF---NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV 353 (379)
Q Consensus 289 pVTF~W~g~----AkeVeVaGSF---NnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV 353 (379)
+|+|+.... ++.|+|+|+- .+|+...+|... ..+.|.+++.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~------------~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV------------KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC------------CCCCEEEEEEecCCCcEEEEEEE
Confidence 567777543 5778899987 489987778642 46789999999998 59999998
No 34
>PLN02316 synthase/transferase
Probab=96.55 E-value=0.038 Score=62.53 Aligned_cols=64 Identities=13% Similarity=0.354 Sum_probs=45.7
Q ss_pred ceEEEEEEec------CCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-CC
Q 017019 287 LEVVEIQYSG------DGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG 355 (379)
Q Consensus 287 LkpVTF~W~g------~AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV-DG 355 (379)
-.+|++.|+. +..+|.|.|.||+|.+....... ..+...+.++.|.+++.+|+.-|-.-|+. ||
T Consensus 328 G~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~-----~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 328 GDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEK-----LVKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccce-----eecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 3589999983 26899999999999975321100 01112234668888999999999999997 66
No 35
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.41 E-value=0.022 Score=46.86 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=48.3
Q ss_pred EEEEEEe-c---CCceEEEEeeeC---CCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC
Q 017019 289 VVEIQYS-G---DGEIVEVAGSFN---GWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 355 (379)
Q Consensus 289 pVTF~W~-g---~AkeVeVaGSFN---nW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---DG 355 (379)
+|+|.-. + .++.|+|+|+-. +|++. ++|... ....|.+.+.||.| ..+|||++ +|
T Consensus 2 ~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~------------~~~~W~~~v~lp~~~~veyKyv~~~~~~ 69 (97)
T cd05810 2 SVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT------------AYPTWSGSISLPASTNVEWKCLKRNETN 69 (97)
T ss_pred eEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC------------CCCeEEEEEEcCCCCeEEEEEEEEcCCC
Confidence 4666633 2 389999999884 89864 456531 45789999999998 79999998 22
Q ss_pred -----EeeeCCCCCeec
Q 017019 356 -----QWKVDPQRESVT 367 (379)
Q Consensus 356 -----eW~~DPdnPtVt 367 (379)
.|...+++-...
T Consensus 70 ~~~~v~WE~g~Nr~~~~ 86 (97)
T cd05810 70 PTAGVQWQGGGNNQLTT 86 (97)
T ss_pred CcceEEEeeCCCEEEeC
Confidence 487776654444
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.28 E-value=0.0087 Score=64.36 Aligned_cols=62 Identities=21% Similarity=0.095 Sum_probs=46.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE--CCE--eeeCCCC
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ--WKVDPQR 363 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV--DGe--W~~DPdn 363 (379)
-++|+..++ |++|.|.|+|++ ....+|.+. .+.|+|++.+.+..|.. |||.| ||+ .+.||-.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-----------~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-----------HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-----------CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 578888887 999999999996 334678763 36899999999888832 45555 885 4666644
No 37
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.62 E-value=0.039 Score=44.95 Aligned_cols=66 Identities=18% Similarity=0.410 Sum_probs=45.1
Q ss_pred EEEEEec--C-CceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CCE-
Q 017019 290 VEIQYSG--D-GEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DGQ- 356 (379)
Q Consensus 290 VTF~W~g--~-AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---DGe- 356 (379)
|+|.... . |+.|+|+|+- .+|++. ++|... .......|++++.+|++ .++|||+| +|.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~---------~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~ 72 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPS---------HQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSV 72 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeec---------CCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcE
Confidence 4555554 3 9999999987 489754 567531 01234589999999988 59999999 342
Q ss_pred --eeeCCCCC
Q 017019 357 --WKVDPQRE 364 (379)
Q Consensus 357 --W~~DPdnP 364 (379)
|...++..
T Consensus 73 ~~wE~g~nr~ 82 (101)
T cd05815 73 LRSESGEKRK 82 (101)
T ss_pred EEeecCCCEe
Confidence 65555543
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.39 E-value=0.047 Score=57.57 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=48.1
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc-----ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-EEEEEEEECCE--ee
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWHH-----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-TYEIKFIVDGQ--WK 358 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~~-----~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPG-rYEYKFIVDGe--W~ 358 (379)
.++|+..++ |++|.|.+ |++|.. .++|.+. ..|+|++.+. +.+| .|.|++..+|. ++
T Consensus 20 ~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~------------~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~ 86 (605)
T TIGR02104 20 KTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG------------ENGVWSAVLEGDLHGYFYTYQVCINGKWRET 86 (605)
T ss_pred eeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC------------CCCEEEEEECCCCCCCEEEEEEEcCCCeEEE
Confidence 489999887 99999997 888853 4678763 6899999996 6677 45555544665 48
Q ss_pred eCCCCCeec
Q 017019 359 VDPQRESVT 367 (379)
Q Consensus 359 ~DPdnPtVt 367 (379)
.||-.....
T Consensus 87 ~DPya~~~~ 95 (605)
T TIGR02104 87 VDPYAKAVT 95 (605)
T ss_pred cCCCcceec
Confidence 888665443
No 39
>PLN02316 synthase/transferase
Probab=95.11 E-value=0.089 Score=59.65 Aligned_cols=99 Identities=21% Similarity=0.395 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccchhHHHHHhhhCCCceEEEEEEec------CCceEEEEeeeCCCccc---cc
Q 017019 245 IEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEESLSGLEVVEIQYSG------DGEIVEVAGSFNGWHHR---IK 315 (379)
Q Consensus 245 le~~k~~LsvL~tKae~eI~eAqklI~eK~~~LdaAeeaLsgLkpVTF~W~g------~AkeVeVaGSFNnW~~~---Ip 315 (379)
|+.+++-.+.+|.+|+...+...++...-. ....-.+|.+.|+. +...|.|.|.||+|.-. .+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~P~--------~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~ 190 (1036)
T PLN02316 119 LERENLRKREIEELAEENFSRGNKLFVYPQ--------VVKPDSDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTER 190 (1036)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCeEEeccc--------cccCCCeeEEEEcCCCCccCCCCceEEEecccccccccccee
Confidence 334445556777778877777776665432 22233477777764 25789999999999864 23
Q ss_pred cCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-CCEeeeCC
Q 017019 316 MDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DGQWKVDP 361 (379)
Q Consensus 316 M~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV-DGeW~~DP 361 (379)
|.|. ...++.|.+++.+|++-|..-|+. ||.-.+|.
T Consensus 191 ~~k~----------~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDN 227 (1036)
T PLN02316 191 LEKT----------ELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDN 227 (1036)
T ss_pred cccc----------ccCCCeEEEEEecCccceEEEEEEeCCcccccc
Confidence 5442 114667888999999999999998 77544443
No 40
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=93.74 E-value=0.3 Score=49.54 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=57.2
Q ss_pred hCCCceEEEEEEecC-C-------ceEEEEeeeCCCccc------cccCCCCCCCccccccccCCCcEEEEEEeCCe-EE
Q 017019 283 SLSGLEVVEIQYSGD-G-------EIVEVAGSFNGWHHR------IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TY 347 (379)
Q Consensus 283 aLsgLkpVTF~W~g~-A-------keVeVaGSFNnW~~~------IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rY 347 (379)
.-.+.+.|||-|+++ + +.|+|- .|+...+ ..|.+- ....+|..++.||.. +-
T Consensus 34 ~~~~~~~vTFlwr~~~~~~~~~~~~~v~~~--~n~~tdh~~~~~~~~l~rl-----------~~tDvW~~~~~~p~~~r~ 100 (411)
T PRK10439 34 LDDGMVRVTFWWRDPQGDEEHSTIRRVWIY--INGVTDHHQNSQPQSLQRI-----------AGTDVWQWSTELSANWRG 100 (411)
T ss_pred CCCCcEEEEEEeeCCCCCcccccceeEEEe--CCCCCCcCccCCcchhhcc-----------CCCceEEEEEEECcccEE
Confidence 345668999999985 3 258874 3344332 357764 368899999999999 89
Q ss_pred EEEEEEC---C-------------------------EeeeCCCCCeecCC--CccceEEEe
Q 017019 348 EIKFIVD---G-------------------------QWKVDPQRESVTKG--GICNNILRV 378 (379)
Q Consensus 348 EYKFIVD---G-------------------------eW~~DPdnPtVtDg--GnvNNVLeV 378 (379)
.|+|+++ . .-+.||.||....+ |+..|+|++
T Consensus 101 sY~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 101 SYCFIPTERDDIFSAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred EEEEEeccccccccccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 9999993 1 11489999986542 444577654
No 41
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=93.53 E-value=0.13 Score=41.92 Aligned_cols=61 Identities=25% Similarity=0.589 Sum_probs=37.8
Q ss_pred EEEEEEec------CCceEEEEeeeCCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-CC--Ee
Q 017019 289 VVEIQYSG------DGEIVEVAGSFNGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-DG--QW 357 (379)
Q Consensus 289 pVTF~W~g------~AkeVeVaGSFNnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV-DG--eW 357 (379)
+|++.|.. ++.+|.+.|.|++|+.. +.|.+. +.....|.|++++.+|..-|+..|.. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~--------~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKM--------CVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEE--------SS---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCccee--------eeeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 67888843 37899999999999875 456642 00123799999999999988999987 65 45
No 42
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=93.40 E-value=0.44 Score=41.18 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=53.3
Q ss_pred eEEEEEEe----cCCceEEEEeeeCCCcccc-----ccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEECCE-
Q 017019 288 EVVEIQYS----GDGEIVEVAGSFNGWHHRI-----KMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIVDGQ- 356 (379)
Q Consensus 288 kpVTF~W~----g~AkeVeVaGSFNnW~~~I-----pM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIVDGe- 356 (379)
+.|||-|. +....|.|-|..+++..+. .|.+- .++.+|..++.||.+ +=.|.|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl-----------~gTDVW~~t~~lp~d~rgSY~~~p~~~~ 70 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRL-----------PGTDVWYWTYRLPADWRGSYSFIPDVPD 70 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE------------TTSSEEEEEEEEETT-EEEEEEEEES-T
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeC-----------CCCceEEEEEEECcccEEEEEEEecCcc
Confidence 47999999 3467899999999996542 35543 367899999999998 89999997533
Q ss_pred ---------------eeeCCCCCeec-C----CCccceEEE
Q 017019 357 ---------------WKVDPQRESVT-K----GGICNNILR 377 (379)
Q Consensus 357 ---------------W~~DPdnPtVt-D----gGnvNNVLe 377 (379)
-+.||-||... . .|..-++++
T Consensus 71 ~~~~~r~~~r~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~ 111 (122)
T PF11806_consen 71 ARGAQREWWRAILAQAQADPLNPRPWPNGAQDRGNAASVLE 111 (122)
T ss_dssp -HHHHHHHHHHHGGG-B--TTSSSEEE-TT---SSEEEEEE
T ss_pred cchhHHHHHHHHHhccCCCCCCCCCCCCCccccccccCcee
Confidence 36789999864 2 367777765
No 43
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.27 E-value=0.78 Score=39.62 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=37.4
Q ss_pred ecCCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe----EEEEEEEE
Q 017019 295 SGDGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG----TYEIKFIV 353 (379)
Q Consensus 295 ~g~AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG----rYEYKFIV 353 (379)
-.++++|+|+|+- .+|++. ++|..... .........|.+.+.||+| ..+|||+.
T Consensus 12 ~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~y-----t~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 12 ADRDTELLVLGSRPELGSWDPQRAVPMRPARK-----ALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred cCCCCEEEEEECchhcCCCCcccccccccccc-----cccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 3468999999986 589864 45654200 0001235579999999986 79999997
No 44
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.18 E-value=0.21 Score=54.14 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=42.8
Q ss_pred EEEEEEecC-CceEEEEeeeCCCcc----ccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCEe
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWHH----RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 357 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~~----~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGeW 357 (379)
.|+|+..++ |+.|.|. -|++|.. .++|.+ ...|+|.+.+. +.+|.| |+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~g~~-Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPE------------RTDDIWHGYLPGAQPGQL-YGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc------------CCCCEEEEEECCCCCCCE-EEEEEeeee
Confidence 588998887 9999995 6776652 356765 36899999995 788875 999999854
No 45
>PRK03705 glycogen debranching enzyme; Provisional
Probab=92.86 E-value=0.23 Score=53.60 Aligned_cols=55 Identities=25% Similarity=0.441 Sum_probs=42.4
Q ss_pred EEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCEe
Q 017019 289 VVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 357 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGeW 357 (379)
.|.|+..++ |++|.|.. |++|. ..++|.+ +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~------------~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPA------------RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeee------------ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 589998887 99999997 77653 3466765 36899999985 77775 4999999854
No 46
>PLN02950 4-alpha-glucanotransferase
Probab=92.79 E-value=0.74 Score=51.77 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=53.3
Q ss_pred CceEEEEEEec----CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe--EEEEEEEE-
Q 017019 286 GLEVVEIQYSG----DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--TYEIKFIV- 353 (379)
Q Consensus 286 gLkpVTF~W~g----~AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG--rYEYKFIV- 353 (379)
..++|+|+... .|+.|+|+|+- .+|++. ++|.. .....|++++.+|++ ..+|||++
T Consensus 151 ~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~------------~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 151 DEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY------------TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred CceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc------------CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 34788888755 38999999987 489864 44543 257889999999988 59999998
Q ss_pred --CC--EeeeCCCCCeecC
Q 017019 354 --DG--QWKVDPQRESVTK 368 (379)
Q Consensus 354 --DG--eW~~DPdnPtVtD 368 (379)
+| .|...++.-...+
T Consensus 219 ~~~g~v~WE~g~NR~~~~p 237 (909)
T PLN02950 219 TAEGLVSLELGVNRELSLD 237 (909)
T ss_pred cCCCceEEeeCCCceeecC
Confidence 44 4877777665554
No 47
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.64 E-value=0.44 Score=54.59 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEEEecC-CceEEEEee-eCCCcc---ccccCCCCCCCccccccccCCCcEEEEEE-eCCe-----EEEEEEEECC--
Q 017019 289 VVEIQYSGD-GEIVEVAGS-FNGWHH---RIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPG-----TYEIKFIVDG-- 355 (379)
Q Consensus 289 pVTF~W~g~-AkeVeVaGS-FNnW~~---~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPG-----rYEYKFIVDG-- 355 (379)
.++|+..++ |++|.|.+- +++|.. .++|.+. ..|+|++.+. +.+| -|.|+|.|+|
T Consensus 328 ~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~------------~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~ 395 (1111)
T TIGR02102 328 TVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG------------DRGVWEVQLTKENTGIDSLTGYYYHYEITRGG 395 (1111)
T ss_pred CEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC------------CCCEEEEEECCcccCcccCCCceEEEEEECCC
Confidence 378998887 999999984 455654 4678763 6899999986 5543 3688888876
Q ss_pred --EeeeCCCCCe
Q 017019 356 --QWKVDPQRES 365 (379)
Q Consensus 356 --eW~~DPdnPt 365 (379)
+.+.||-...
T Consensus 396 ~~~~~~DPYA~a 407 (1111)
T TIGR02102 396 DKVLALDPYAKS 407 (1111)
T ss_pred ceEEEeChhheE
Confidence 4678875543
No 48
>PLN02950 4-alpha-glucanotransferase
Probab=90.48 E-value=1.5 Score=49.41 Aligned_cols=68 Identities=18% Similarity=0.439 Sum_probs=47.9
Q ss_pred eEEEEEEec---CCceEEEEeee---CCCccc--cccCCCCCCCccccccccCCCcEEEEEEeCCe-EEEEEEEE---CC
Q 017019 288 EVVEIQYSG---DGEIVEVAGSF---NGWHHR--IKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG-TYEIKFIV---DG 355 (379)
Q Consensus 288 kpVTF~W~g---~AkeVeVaGSF---NnW~~~--IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG-rYEYKFIV---DG 355 (379)
..|+|..+. -|++|+|+|+- .+|+.. ++|... +......|++++.||+| ..+|||++ +|
T Consensus 9 V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~---------~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g 79 (909)
T PLN02950 9 VTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPV---------HQGDELVWEGSVSVPEGFSCEYSYYVVDDNK 79 (909)
T ss_pred EEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccc---------cCCCCCeEEEEEEecCCCeEEEEEEEEeCCC
Confidence 566666654 28999999998 479854 567532 11235589999999988 69999995 44
Q ss_pred E---eeeCCCCC
Q 017019 356 Q---WKVDPQRE 364 (379)
Q Consensus 356 e---W~~DPdnP 364 (379)
. |...++.-
T Consensus 80 ~vi~WE~g~NR~ 91 (909)
T PLN02950 80 NVLRWEAGKKRK 91 (909)
T ss_pred ceeeeecCCCee
Confidence 3 77766443
No 49
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=90.05 E-value=0.76 Score=51.69 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=48.5
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCc--cccccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC------CE-
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWH--HRIKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD------GQ- 356 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~--~~IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVD------Ge- 356 (379)
..++|+..++ |++|.|.+.+++|. ..++|.++ ...|+|++.+. ...|.| |+|.|+ |+
T Consensus 135 ~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-----------~~~GVWsv~v~g~~~G~~-Y~Y~V~v~~p~~G~v 202 (898)
T TIGR02103 135 SGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-----------STSGVWSAEGGSSWKGAY-YRYEVTVYHPSTGKV 202 (898)
T ss_pred CcEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-----------CCCCEEEEEECcCCCCCE-eEEEEEEecCCCCeE
Confidence 4689999987 99999998776664 23678763 25899999985 566753 666665 54
Q ss_pred ---eeeCCCCCeec
Q 017019 357 ---WKVDPQRESVT 367 (379)
Q Consensus 357 ---W~~DPdnPtVt 367 (379)
++.||-.....
T Consensus 203 ~~~~v~DPYA~als 216 (898)
T TIGR02103 203 ETYLVTDPYSVSLS 216 (898)
T ss_pred CCeEEeCcCcceEc
Confidence 37787665443
No 50
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=89.65 E-value=1.8 Score=34.91 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=38.2
Q ss_pred eEEEEEEec---CCceEEEEeeeCC--Cc-cccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE
Q 017019 288 EVVEIQYSG---DGEIVEVAGSFNG--WH-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV 353 (379)
Q Consensus 288 kpVTF~W~g---~AkeVeVaGSFNn--W~-~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV 353 (379)
.+|+|+.+. +...|.|.-.-+. |. ..++|.+..+ +.....|++++.++.|++.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~--------~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGS--------DELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeee--------CCceeEEEEEEecCCcEEEEEEEE
Confidence 456666653 3678888765553 22 2477876421 112246999999888999999999
No 51
>PLN02960 alpha-amylase
Probab=88.50 E-value=0.46 Score=53.42 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=42.0
Q ss_pred EEEEEEec-CCceEEEEeeeCCCccccc-cCCCCCCCccccccccCCCcEEEEEE--eCCeE-------EEEEEEEC
Q 017019 289 VVEIQYSG-DGEIVEVAGSFNGWHHRIK-MDPLPSSSIIEPIRSRKSRLWSTVLW--LYPGT-------YEIKFIVD 354 (379)
Q Consensus 289 pVTF~W~g-~AkeVeVaGSFNnW~~~Ip-M~Kd~sss~~~~~~ske~GvWsltL~--LPPGr-------YEYKFIVD 354 (379)
.|.|.-.+ +|..+.|.|+||||.++-. |.+ +-.+..+-|+|.+++. |..|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRARE-------GYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhc-------ccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 56666555 4999999999999998743 332 1123357899999985 88772 36777775
No 52
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=83.27 E-value=3.5 Score=47.79 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=43.9
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc----cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEECCEe
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHR----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVDGQW 357 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~----IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVDGeW 357 (379)
..|+|+...+ +++|.|. .|+.|... ++|.. +..|+|.+.+. +.+|. .|+|.|+|.|
T Consensus 23 ~gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~------------~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 23 GGVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG------------RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred CeEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC------------CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 3689988887 9999997 89988643 45543 36899999875 88997 6999999855
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=70.27 E-value=12 Score=42.83 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=37.0
Q ss_pred eEEEEEEecC-CceEEEEeeeCCCccc-----cccCCCCCCCccccccccCCCcEEEEEE-eCCeEEEEEEEEC
Q 017019 288 EVVEIQYSGD-GEIVEVAGSFNGWHHR-----IKMDPLPSSSIIEPIRSRKSRLWSTVLW-LYPGTYEIKFIVD 354 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaGSFNnW~~~-----IpM~Kd~sss~~~~~~ske~GvWsltL~-LPPGrYEYKFIVD 354 (379)
..++|+..++ |++|.|.. |++|... ++|. ...|+|++.+. ...|. .|+|.|+
T Consensus 222 ~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-------------~~~GVWsv~v~~~~~G~-~Y~Y~V~ 280 (970)
T PLN02877 222 DAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-------------ESNGVWSVEGPKSWEGC-YYVYEVS 280 (970)
T ss_pred CCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-------------CCCCEEEEEeccCCCCC-eeEEEEe
Confidence 3689998887 99999984 6665321 3454 26899999986 45664 4777775
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.31 E-value=24 Score=35.78 Aligned_cols=12 Identities=0% Similarity=0.210 Sum_probs=6.0
Q ss_pred CCceEEEEeeeC
Q 017019 297 DGEIVEVAGSFN 308 (379)
Q Consensus 297 ~AkeVeVaGSFN 308 (379)
+++.......++
T Consensus 189 P~~sLt~sst~~ 200 (305)
T PF15290_consen 189 PAKSLTRSSTYT 200 (305)
T ss_pred cccccccccccc
Confidence 455555544443
No 55
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.03 E-value=11 Score=37.80 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 017019 220 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 250 (379)
Q Consensus 220 n~~e~~~Lk~mlhqkElel~~~K~ele~~k~ 250 (379)
=..||++||-|||||.-++..--.+|-+.|+
T Consensus 230 lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 230 LKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 3579999999999998877665556555554
No 56
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=62.51 E-value=17 Score=30.49 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred EEEEEEec---CCceEEEE-eeeCCC----c-cccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE--CCE-
Q 017019 289 VVEIQYSG---DGEIVEVA-GSFNGW----H-HRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV--DGQ- 356 (379)
Q Consensus 289 pVTF~W~g---~AkeVeVa-GSFNnW----~-~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV--DGe- 356 (379)
+|+|+.+. +.++|.|. |+-..| . ...+|.+.. .+..-..|++++.++..+..|.|.| +|+
T Consensus 22 ~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~--------~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~ 93 (120)
T PF02903_consen 22 TLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIA--------SDELFDYYEATLKLPEKRLRYYFELEDGGET 93 (120)
T ss_dssp EEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEE--------EESSEEEEEEEEE-TTSEEEEEEEEEETTEE
T ss_pred EEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEE--------eCCCeEEEEEEEECCCCeEEEEEEEEeCCEE
Confidence 45555543 47888885 565555 1 236788741 1234458899999999988888887 443
Q ss_pred eeeCCCC
Q 017019 357 WKVDPQR 363 (379)
Q Consensus 357 W~~DPdn 363 (379)
|.++..-
T Consensus 94 ~~y~~~G 100 (120)
T PF02903_consen 94 YYYGERG 100 (120)
T ss_dssp EEEETTE
T ss_pred EEEeCCc
Confidence 6665544
No 57
>PLN03244 alpha-amylase; Provisional
Probab=61.37 E-value=8.7 Score=43.53 Aligned_cols=59 Identities=19% Similarity=0.417 Sum_probs=40.5
Q ss_pred EEE-EEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEE--eCCe----EE---EEEEEEC
Q 017019 290 VEI-QYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLW--LYPG----TY---EIKFIVD 354 (379)
Q Consensus 290 VTF-~W~g~AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~--LPPG----rY---EYKFIVD 354 (379)
++| .|..+|.--.|.|+||||.+.-...+. +..+..+-|+|.+.+. |..| .| +|.|.-|
T Consensus 133 ~~~~ewapga~~~~~~gdfn~w~~~~~~~r~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 133 VDFMDWAPGARYCAIIGDFNGWSPTENAARE------GHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred ceeEeecCCcceeeeeccccCCCcccccccc------ccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 444 566679999999999999987444332 1123357899999985 8877 23 5666544
No 58
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=60.71 E-value=27 Score=29.55 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=38.4
Q ss_pred EEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCe--------EEEEEEEECCE
Q 017019 289 VVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPG--------TYEIKFIVDGQ 356 (379)
Q Consensus 289 pVTF~W~g~--AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPG--------rYEYKFIVDGe 356 (379)
..++....- .+.|.|.=+||+|.....+.-.+..+............|..++.||+. .+-.+|.+.|.
T Consensus 22 ~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 22 SGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred EEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 344455543 688999999999987543321111000000111233588888888754 57789999995
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=59.38 E-value=27 Score=31.17 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCCceEEEEEEecC-CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEE
Q 017019 284 LSGLEVVEIQYSGD-GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 350 (379)
Q Consensus 284 LsgLkpVTF~W~g~-AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYK 350 (379)
.+---+|+|.|... ++.|...++..-|... .+.- +.+-.|+.++.- ||.|.|+
T Consensus 58 v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~------------~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 58 VKPGDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA------------GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred ECCCCEEEEEECCCCCceEEEeCCCCccccc-cccc------------CCCcceEEEecc-cceEEEE
Confidence 33445899999998 9999999998555542 2211 234566666655 9999885
No 60
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=59.08 E-value=11 Score=42.21 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=32.4
Q ss_pred EEEEEecC-CceEEEEeeeCCCcccc-ccCCCCCCCccccccccCCCcEEEEEEeC
Q 017019 290 VEIQYSGD-GEIVEVAGSFNGWHHRI-KMDPLPSSSIIEPIRSRKSRLWSTVLWLY 343 (379)
Q Consensus 290 VTF~W~g~-AkeVeVaGSFNnW~~~I-pM~Kd~sss~~~~~~ske~GvWsltL~LP 343 (379)
|.|+-.++ ++.|.++|+||+|+... .|.. ....|.|++.+.-.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-----------k~~~g~w~i~l~~~ 159 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-----------KDDLGVWEIDLPPK 159 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-----------ccccceeEEecCcc
Confidence 77777776 89999999999999752 2331 14789999988633
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.52 E-value=37 Score=37.69 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=47.2
Q ss_pred hhhccHHHHHHHHHhhhHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHh--------------------
Q 017019 216 RRRENQLEIDHLKFMLHQKEMELSRLKEQIEK--------------EKLALSVLQTKAVT-------------------- 261 (379)
Q Consensus 216 ~~~~n~~e~~~Lk~mlhqkElel~~~K~ele~--------------~k~~LsvL~tKae~-------------------- 261 (379)
.++|=+.|+.+|++-|.+||.++..+++++.+ .-.+|++||-|...
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg 625 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG 625 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44556778999999999999999988887731 11467777776543
Q ss_pred ----hhhhhhhhcccchhHHHHHhhhCCC
Q 017019 262 ----EINKAEKLISDKDEELIAAEESLSG 286 (379)
Q Consensus 262 ----eI~eAqklI~eK~~~LdaAeeaLsg 286 (379)
+|..++..|..|+.++..-+.++..
T Consensus 626 ~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 626 DAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455677777665555443
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.23 E-value=1.5e+02 Score=29.44 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=30.4
Q ss_pred cHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhhcccc
Q 017019 220 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT----------EINKAEKLISDK 273 (379)
Q Consensus 220 n~~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~----------eI~eAqklI~eK 273 (379)
.+.|++.+|..|..-+.++...|.+|++.+.+++.++.+.+. +|.+|++.....
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666655555555555555555555555444443332 777888777544
No 63
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=48.95 E-value=19 Score=39.94 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=37.3
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 017019 224 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK 273 (379)
Q Consensus 224 ~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK 273 (379)
|++||+.+-||.+||.++|.+||.++.++.-|....--++.-...|+-.+
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~ 165 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQ 165 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCccc
Confidence 57899999999999999999999988887665554444555555555444
No 64
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=46.74 E-value=35 Score=27.59 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=39.0
Q ss_pred eEEEEEEecC---CceEEEEeee-CCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEE-C-CEeeeC
Q 017019 288 EVVEIQYSGD---GEIVEVAGSF-NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIV-D-GQWKVD 360 (379)
Q Consensus 288 kpVTF~W~g~---AkeVeVaGSF-NnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIV-D-GeW~~D 360 (379)
-.|.+.+.++ -..|+|.++- ..| ++|.+. -...|.+.-.++.|-+.+|+.. | |+|...
T Consensus 14 l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~------------wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 14 LAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRS------------WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp EEEEEEECCTTS-EEEEEEEETTSSS----EE-EEE------------CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred EEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecC------------cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 4677777765 3689999554 347 478763 4679999877778899999988 7 888654
No 65
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=45.29 E-value=48 Score=26.91 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=10.8
Q ss_pred CCcEEEEE-EeCCeEEEEE
Q 017019 333 SRLWSTVL-WLYPGTYEIK 350 (379)
Q Consensus 333 ~GvWsltL-~LPPGrYEYK 350 (379)
+..+++++ .++||.|+|-
T Consensus 73 g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp T-EEEEEEEE-S-EEEEEB
T ss_pred CCEEEEEEcCCCCEEEEEE
Confidence 45566665 7999998873
No 66
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=45.22 E-value=47 Score=34.56 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCcEEEEE--EeCCeEEEEEEEECCE
Q 017019 332 KSRLWSTVL--WLYPGTYEIKFIVDGQ 356 (379)
Q Consensus 332 e~GvWsltL--~LPPGrYEYKFIVDGe 356 (379)
.+|+|+..+ ..+||+|+.++.+||.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 689999876 4789999999999984
No 67
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=40.70 E-value=85 Score=26.25 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=30.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhcccch
Q 017019 232 HQKEMELSRLKEQIEKEKLALSVLQTKAV-------TEINKAEKLISDKD 274 (379)
Q Consensus 232 hqkElel~~~K~ele~~k~~LsvL~tKae-------~eI~eAqklI~eK~ 274 (379)
..-|.|..||...|++.+.+|..|..++. .+|.+||.++.+-+
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~ 80 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDP 80 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCH
Confidence 45566777777777777777777776643 38889998887654
No 68
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=40.27 E-value=93 Score=27.02 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=11.8
Q ss_pred eEEEEEEecCCceEEE
Q 017019 288 EVVEIQYSGDGEIVEV 303 (379)
Q Consensus 288 kpVTF~W~g~AkeVeV 303 (379)
-+|+|+|...++.|..
T Consensus 23 dTV~f~n~d~~Hnv~~ 38 (116)
T TIGR02375 23 DTVTFVPTDKGHNVET 38 (116)
T ss_pred CEEEEEECCCCeeEEE
Confidence 3788888877776654
No 69
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=39.77 E-value=46 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=26.2
Q ss_pred CCCcEEEEEEeCCeEEEEEEEECCEeeeCCCCCee
Q 017019 332 KSRLWSTVLWLYPGTYEIKFIVDGQWKVDPQRESV 366 (379)
Q Consensus 332 e~GvWsltL~LPPGrYEYKFIVDGeW~~DPdnPtV 366 (379)
..|.=++.+.|+||+|....+. |.+.+-|..|.+
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~v 82 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPPV 82 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCce
Confidence 4666778899999999999887 666666666543
No 70
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=39.06 E-value=49 Score=31.02 Aligned_cols=40 Identities=33% Similarity=0.776 Sum_probs=22.7
Q ss_pred CCCccccccCCCCCCCccccccccCCCcEEEEEEeC-CeEEEEEEE--EC--CEeeeC
Q 017019 308 NGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY-PGTYEIKFI--VD--GQWKVD 360 (379)
Q Consensus 308 NnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LP-PGrYEYKFI--VD--GeW~~D 360 (379)
..|+. ++|.+. .+..|...+.+. +|+|+|+.. +| +.|+.+
T Consensus 55 ~~w~~-vpM~~~------------gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPL------------GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES------------TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccC------------CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 35875 799863 688999999755 899999986 45 345543
No 71
>PRK10785 maltodextrin glucosidase; Provisional
Probab=37.76 E-value=1.2e+02 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=38.6
Q ss_pred eEEEEEEecC--CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeC--CeEEEEEEEE--CCE
Q 017019 288 EVVEIQYSGD--GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLY--PGTYEIKFIV--DGQ 356 (379)
Q Consensus 288 kpVTF~W~g~--AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LP--PGrYEYKFIV--DGe 356 (379)
..++++-..+ ...|.|.=.+++-...++|.+... +.....|++++.++ +|++.|.|.+ +|+
T Consensus 21 ~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~--------~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 21 LLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRS--------QPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred EEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeec--------CCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4455544432 568888665566555678887421 11234699999885 7888898888 554
No 72
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.29 E-value=3e+02 Score=28.83 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=21.2
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017019 223 EIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKA 259 (379)
Q Consensus 223 e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKa 259 (379)
+++.|+..+.+-|.++.++..++...++.+..|++..
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666655555555555554443
No 73
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=36.89 E-value=34 Score=25.07 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=15.0
Q ss_pred EEEE-EeCCeEEEEEEEE---CCEeeeCC
Q 017019 337 STVL-WLYPGTYEIKFIV---DGQWKVDP 361 (379)
Q Consensus 337 sltL-~LPPGrYEYKFIV---DGeW~~DP 361 (379)
.++. .||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 4554 6999999988876 58887765
No 74
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.41 E-value=42 Score=36.41 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCCcEEEEEEeCCe-EEEEEEEEC---CEeeeCCCCCeecC
Q 017019 332 KSRLWSTVLWLYPG-TYEIKFIVD---GQWKVDPQRESVTK 368 (379)
Q Consensus 332 e~GvWsltL~LPPG-rYEYKFIVD---GeW~~DPdnPtVtD 368 (379)
.+|.+-+.+.++|| .|.|+|.|| |.+.+-+..-..+.
T Consensus 96 ~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra 136 (563)
T KOG1263|consen 96 QDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRA 136 (563)
T ss_pred ccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccc
Confidence 45688899999999 799999999 55555555544443
No 75
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=35.99 E-value=59 Score=25.21 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcccch-hHHHHHhh
Q 017019 248 EKLALSVLQTKAVTEINKAEKLISDKD-EELIAAEE 282 (379)
Q Consensus 248 ~k~~LsvL~tKae~eI~eAqklI~eK~-~~LdaAee 282 (379)
.+.-|+.|-.-|+.||.+-++.-..|+ |-|+|++.
T Consensus 13 L~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAiea 48 (49)
T PF11629_consen 13 LQQRLASLDPEMEQEIEELRQRYQAKRQPILDAIEA 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHHhc
Confidence 334578889999999999999999997 77777654
No 76
>PRK11637 AmiB activator; Provisional
Probab=35.48 E-value=1.2e+02 Score=30.83 Aligned_cols=8 Identities=38% Similarity=0.306 Sum_probs=3.0
Q ss_pred hhhhhhhc
Q 017019 263 INKAEKLI 270 (379)
Q Consensus 263 I~eAqklI 270 (379)
|.+++.-|
T Consensus 112 I~~~q~~l 119 (428)
T PRK11637 112 IAKLEQQQ 119 (428)
T ss_pred HHHHHHHH
Confidence 33333333
No 77
>PRK10093 primosomal replication protein N''; Provisional
Probab=35.30 E-value=44 Score=31.40 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=45.8
Q ss_pred cCCccccCCCCCCCcccC-Ccc-cccccchHHhhhccHHHHHHHHHhhhHHHHHHhHHHHH--HHHHHHHHHHHHHHHHh
Q 017019 186 IASFATVNHPLSEDHLGT-GVE-GADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQ--IEKEKLALSVLQTKAVT 261 (379)
Q Consensus 186 ~~~~~~~~~~~~~d~~~~-~~~-d~~kdl~ea~~~~n~~e~~~Lk~mlhqkElel~~~K~e--le~~k~~LsvL~tKae~ 261 (379)
-..-+...+++|..+++. ++. +..++ . ++ -+|| ++|..|...+|+.+.++-.- =.+..-+|.++++-...
T Consensus 81 ALqRElatq~lR~~e~~~~~~~~~~~~~-l---qH-Qd~E-RRL~~Mv~dre~~L~~a~~~~~qq~lq~el~alegRL~R 154 (171)
T PRK10093 81 AIAREAAAWSLREWDSAPPGLARWQRKR-I---QH-QEFE-RRLLEMVAERRARLARATDLVEQQTLHREVEAYEGRLAR 154 (171)
T ss_pred HHHHHHHhhHHhhcCCCCCchhHHHHHH-H---Hh-HHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999988643 222 22222 2 55 5788 88999999999999977652 23445566666665544
No 78
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=34.48 E-value=94 Score=34.54 Aligned_cols=73 Identities=27% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccch-------------hHHHHHhhhCCCce
Q 017019 222 LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKD-------------EELIAAEESLSGLE 288 (379)
Q Consensus 222 ~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK~-------------~~LdaAeeaLsgLk 288 (379)
-+|+-+...|.|||.++.++-.+|+..++.++-+..+....|..-.+.+..|. ..++.++..|+-|+
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILK 357 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 45788889999999999999988888888777777777777766666665554 44455555566667
Q ss_pred EEEEEE
Q 017019 289 VVEIQY 294 (379)
Q Consensus 289 pVTF~W 294 (379)
.+-|--
T Consensus 358 ~ief~~ 363 (629)
T KOG0963|consen 358 AIEFGD 363 (629)
T ss_pred HhhcCC
Confidence 777653
No 79
>PRK11637 AmiB activator; Provisional
Probab=34.15 E-value=1.1e+02 Score=31.06 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 017019 222 LEIDHLKFMLHQKEMELSRLKEQIEKEKL 250 (379)
Q Consensus 222 ~e~~~Lk~mlhqkElel~~~K~ele~~k~ 250 (379)
.+++.|...+..-+.++..+..+|.+.+.
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ 103 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNK 103 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333333333333333
No 80
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=33.40 E-value=1.7e+02 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=19.4
Q ss_pred EeCCeEEEEEEEE---CCEeeeCCCCCe
Q 017019 341 WLYPGTYEIKFIV---DGQWKVDPQRES 365 (379)
Q Consensus 341 ~LPPGrYEYKFIV---DGeW~~DPdnPt 365 (379)
.|+||+|.++..+ ++.|....+..+
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~I 129 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTI 129 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEE
Confidence 5899999999988 457988765544
No 81
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=33.11 E-value=98 Score=24.46 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=23.7
Q ss_pred EEEEEEecC-CceEEE-EeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEE
Q 017019 289 VVEIQYSGD-GEIVEV-AGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIK 350 (379)
Q Consensus 289 pVTF~W~g~-AkeVeV-aGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYK 350 (379)
+|+|++..+ +..|.. .|.+.++...-.+. .....|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~-------------~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMM-------------KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcccccccccc-------------CCCCEEEEECC-CCEEEEEE
Confidence 566666654 566653 44443332111111 12445665553 47777764
No 82
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=32.74 E-value=1.3e+02 Score=26.17 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.7
Q ss_pred CCcEEEEEEeCCeEEEEE
Q 017019 333 SRLWSTVLWLYPGTYEIK 350 (379)
Q Consensus 333 ~GvWsltL~LPPGrYEYK 350 (379)
...|+.++. .||.|.|.
T Consensus 83 G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 83 GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEec-CCcEEEEE
Confidence 446777774 67888775
No 83
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.72 E-value=72 Score=31.81 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=32.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc---hhHHHHHhhhCCCceEEEEEEe
Q 017019 231 LHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK---DEELIAAEESLSGLEVVEIQYS 295 (379)
Q Consensus 231 lhqkElel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK---~~~LdaAeeaLsgLkpVTF~W~ 295 (379)
|...+.+|-..+.+|.+.+..|+.|+...+..+.+.+++-.+. ..+|+.|+.-+++|..=..+|.
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 3344444444555555555555555555555444444443332 3566666666665544444443
No 84
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=32.63 E-value=2.1e+02 Score=27.27 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=3.4
Q ss_pred EEEEEecCC
Q 017019 290 VEIQYSGDG 298 (379)
Q Consensus 290 VTF~W~g~A 298 (379)
.+++=|.+|
T Consensus 205 ~~I~AP~~G 213 (334)
T TIGR00998 205 TVIRAPFDG 213 (334)
T ss_pred cEEEcCCCc
Confidence 334333333
No 85
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.19 E-value=4.6e+02 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=10.3
Q ss_pred hhhhhhhcccchhHHHHHhhhC
Q 017019 263 INKAEKLISDKDEELIAAEESL 284 (379)
Q Consensus 263 I~eAqklI~eK~~~LdaAeeaL 284 (379)
+.+++.-+..-+.++..++..+
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555443
No 86
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=29.49 E-value=1.5e+02 Score=32.60 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhc
Q 017019 219 ENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT---EINKAEKLI 270 (379)
Q Consensus 219 ~n~~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~---eI~eAqklI 270 (379)
.|+.||.+|..|..+-|-.--+.-.|+.+.|-+|.--++|+.+ ++..|++.|
T Consensus 25 g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~v 79 (604)
T KOG3564|consen 25 GNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQV 79 (604)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 3799999999999998887777777788777777777777766 666666655
No 87
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=29.39 E-value=99 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=19.2
Q ss_pred cCCCcEEEEEEeCCeEEEEEEEECCEe
Q 017019 331 RKSRLWSTVLWLYPGTYEIKFIVDGQW 357 (379)
Q Consensus 331 ke~GvWsltL~LPPGrYEYKFIVDGeW 357 (379)
+..|.|.+. .|+||.|..++.-.|-.
T Consensus 35 d~~G~f~~~-~l~~g~Y~l~v~~~g~~ 60 (82)
T PF13620_consen 35 DSDGRFSFE-GLPPGTYTLRVSAPGYQ 60 (82)
T ss_dssp -TTSEEEEE-EE-SEEEEEEEEBTTEE
T ss_pred CCCceEEEE-ccCCEeEEEEEEECCcc
Confidence 578999877 46779999998877753
No 88
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.32 E-value=2.4e+02 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=26.4
Q ss_pred hccHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 017019 218 RENQLEIDHLKFMLHQKEMELSRLKEQIEKEKL 250 (379)
Q Consensus 218 ~~n~~e~~~Lk~mlhqkElel~~~K~ele~~k~ 250 (379)
.-|-..+++|...++++|-|+..+|.+++....
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677899999999999999999988876543
No 89
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=29.19 E-value=7.2 Score=33.27 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-ccchhHHHHHhhhCCCceEEEEEEec-----CCceEEEEeeeC
Q 017019 235 EMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLI-SDKDEELIAAEESLSGLEVVEIQYSG-----DGEIVEVAGSFN 308 (379)
Q Consensus 235 Elel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI-~eK~~~LdaAeeaLsgLkpVTF~W~g-----~AkeVeVaGSFN 308 (379)
|.++.++..++++.|.++..|+.+... ...+ ....+..+.+--.|+-.+.+.|.|.. ....+.|.|.-.
T Consensus 19 E~~l~~l~~el~~L~~~l~eLe~~~~~-----~~~~~~~~~~~~d~~vlklkLYrsLGI~~e~~~~~~~~~~~lI~~~~~ 93 (118)
T PF08286_consen 19 ESELESLQSELEELKEELEELEEQEVE-----GEEVDEDTTEEIDSNVLKLKLYRSLGIELEYDEDNGENNKVLIRNDNK 93 (118)
T ss_dssp ------------------------HT-----------CCCCCHHCCCHHHHHHHHHCCEEEEC-----CCTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-----hcccccccCcccchHHHHHHHHHhCcEEEEecccccccceEEEEcCCC
Confidence 456666667777777777777766655 1111 12234444444445555677788876 567788888776
Q ss_pred CCccccccCCC
Q 017019 309 GWHHRIKMDPL 319 (379)
Q Consensus 309 nW~~~IpM~Kd 319 (379)
|=-+.+++.+.
T Consensus 94 g~v~~l~ld~~ 104 (118)
T PF08286_consen 94 GDVHVLNLDPK 104 (118)
T ss_dssp SSEEEEEE-TT
T ss_pred CCceEEeeCCC
Confidence 42334666653
No 90
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=28.29 E-value=3e+02 Score=22.76 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=19.0
Q ss_pred CCCcEEEEEEeC---CeEEEEEEEE----CCEe
Q 017019 332 KSRLWSTVLWLY---PGTYEIKFIV----DGQW 357 (379)
Q Consensus 332 e~GvWsltL~LP---PGrYEYKFIV----DGeW 357 (379)
.-|.|+.++.++ ||.|....+. ||.|
T Consensus 56 ~~g~F~~tv~~~~~~~~~g~l~v~~~s~~dGs~ 88 (88)
T PF10648_consen 56 SWGPFEGTVSFPPPPPGKGTLEVFEDSAKDGSW 88 (88)
T ss_pred cccceEEEEEeCCCCCCceEEEEEEeCCCCCCC
Confidence 578999999877 7877665553 5666
No 91
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=28.09 E-value=1.6e+02 Score=25.79 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=41.3
Q ss_pred cccccchHHhhhccHHHHHHHHHhhh-------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccc
Q 017019 207 GADFDSSEARRRENQLEIDHLKFMLH-------------QKEMELSRLKEQIEKEKLALSVLQTKAVT-EINKAEKLISD 272 (379)
Q Consensus 207 d~~kdl~ea~~~~n~~e~~~Lk~mlh-------------qkElel~~~K~ele~~k~~LsvL~tKae~-eI~eAqklI~e 272 (379)
.+.+.+.-|-+++|+-.|+-|..-|. ..+.++...+.++++-+.+|.-.+.+-.. +|.+.++.+.+
T Consensus 28 ~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~e 107 (115)
T PF06476_consen 28 AIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAE 107 (115)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 47888899999999999998887654 23344444555555555555443333221 44444444444
Q ss_pred chhHH
Q 017019 273 KDEEL 277 (379)
Q Consensus 273 K~~~L 277 (379)
.+.+|
T Consensus 108 a~~eL 112 (115)
T PF06476_consen 108 AKAEL 112 (115)
T ss_pred HHHHH
Confidence 44443
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.14 E-value=2.7e+02 Score=26.59 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccchhHHHHHh
Q 017019 223 EIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAE 281 (379)
Q Consensus 223 e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK~~~LdaAe 281 (379)
|+..++..+..-+.++..++...+..+..|..++.....+..+-+..|.++..++..++
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 33444444444444444444444444444444444444444445555555554444443
No 93
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.99 E-value=82 Score=33.00 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=52.6
Q ss_pred ccccchHHhhhccHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccchhHHHHHhhh
Q 017019 208 ADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAEES 283 (379)
Q Consensus 208 ~~kdl~ea~~~~n~~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK~~~LdaAeea 283 (379)
+...+.|-|++ =|...+.+++.-.-||.|...+-+||.++-+-.++|-.--.+-+.+-+.+|..++..+-.-|.+
T Consensus 135 li~~~~EEn~~-lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsK 209 (401)
T PF06785_consen 135 LIRHLREENQC-LQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESK 209 (401)
T ss_pred HHHHHHHHHHH-HHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHH
Confidence 34444555555 5666777777778888899999999999988888887766667777777776666555443433
No 94
>PRK02710 plastocyanin; Provisional
Probab=26.96 E-value=1.7e+02 Score=24.80 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=7.6
Q ss_pred cEEEEEEeCCeEEEE
Q 017019 335 LWSTVLWLYPGTYEI 349 (379)
Q Consensus 335 vWsltL~LPPGrYEY 349 (379)
.|++++.- ||.|.|
T Consensus 89 t~~~tF~~-~G~y~y 102 (119)
T PRK02710 89 SWEETFSE-AGTYTY 102 (119)
T ss_pred EEEEEecC-CEEEEE
Confidence 45555543 666655
No 95
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=26.95 E-value=2.6e+02 Score=24.89 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=38.8
Q ss_pred eEEEEEEecC---------CceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEEEeCCeEEEEEEEECCE--
Q 017019 288 EVVEIQYSGD---------GEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVLWLYPGTYEIKFIVDGQ-- 356 (379)
Q Consensus 288 kpVTF~W~g~---------AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL~LPPGrYEYKFIVDGe-- 356 (379)
..+.|++.+. +-.+.+.|.+..|+.. .++. .+...+++++ -.+.||+.+||+
T Consensus 78 ~~~~~~~~~a~~~~dg~~~~~~~~~~G~~~~~~~g-~~k~------------g~~~~~~~~~----~v~yyk~~idG~~~ 140 (167)
T PF04985_consen 78 KGVRFTFRGAYQDDDGETIPVVAVIRGRIKSVDPG-EWKP------------GEKTETSIEF----SVTYYKLEIDGKEI 140 (167)
T ss_pred ccEEEEEEEEEEEcCCcEEEEEEEEEEEEEeeCCc-ccCc------------CccccceEEE----EEEEEEEEECCEEE
Confidence 4566666542 2356788888777643 2222 1222333333 256999999997
Q ss_pred eeeCCCCCeec
Q 017019 357 WKVDPQRESVT 367 (379)
Q Consensus 357 W~~DPdnPtVt 367 (379)
+..|..+.+..
T Consensus 141 ~eiD~~n~i~~ 151 (167)
T PF04985_consen 141 IEIDKLNNIYR 151 (167)
T ss_pred EEEECccCEEE
Confidence 88888887655
No 96
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.94 E-value=2e+02 Score=28.03 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=50.5
Q ss_pred ccccchHHhhhccH----HHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 017019 208 ADFDSSEARRRENQ----LEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDK 273 (379)
Q Consensus 208 ~~kdl~ea~~~~n~----~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK 273 (379)
+...+.-|+++=|+ .+|+.||......|.++..++.++...|.+......+-..---|-+.|+..|
T Consensus 14 lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 14 LQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344445554444 5899999999999999999999999999988777766666556666777776
No 97
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.11 E-value=2.5e+02 Score=27.35 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=11.2
Q ss_pred hHHHHHhhhCCC----ceEEEEEEecCC
Q 017019 275 EELIAAEESLSG----LEVVEIQYSGDG 298 (379)
Q Consensus 275 ~~LdaAeeaLsg----LkpVTF~W~g~A 298 (379)
.++..++..+.. +...+++=|.+|
T Consensus 253 ~~l~~~~~~l~~~~~~l~~~~i~AP~dG 280 (423)
T TIGR01843 253 ARLAELRERLNKARDRLQRLIIRSPVDG 280 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhcEEECCCCc
Confidence 444444444332 445555555544
No 98
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=25.93 E-value=1.6e+02 Score=29.60 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=45.8
Q ss_pred ccccchHHhhhccHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-------hhhhhhhhcccchhHHHHH
Q 017019 208 ADFDSSEARRRENQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT-------EINKAEKLISDKDEELIAA 280 (379)
Q Consensus 208 ~~kdl~ea~~~~n~~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~-------eI~eAqklI~eK~~~LdaA 280 (379)
+..|.....+..++.|-.|..+|||-+-|.- +=.=+++++++++....||. .|.+-++.+..|+-+|+..
T Consensus 130 ~~~d~~rgkk~~~~~Ed~H~LRLLhNR~LQW---RFaNArAeaa~~~q~~~aE~~L~~~w~~is~Lr~sV~~KRi~lq~~ 206 (311)
T PF04484_consen 130 FAADVRRGKKGASQIEDAHQLRLLHNRLLQW---RFANARAEAALSAQKANAEKKLYNAWLRISELRDSVAMKRIELQRL 206 (311)
T ss_pred ccccccccccCcchhHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566777899999999776633 22233455666555555554 5666777777777777766
Q ss_pred hhh
Q 017019 281 EES 283 (379)
Q Consensus 281 eea 283 (379)
++.
T Consensus 207 kq~ 209 (311)
T PF04484_consen 207 KQE 209 (311)
T ss_pred HHH
Confidence 655
No 99
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.88 E-value=67 Score=35.24 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.6
Q ss_pred eCCeEEEEEEEECCEe---eeCCCCCeecC
Q 017019 342 LYPGTYEIKFIVDGQW---KVDPQRESVTK 368 (379)
Q Consensus 342 LPPGrYEYKFIVDGeW---~~DPdnPtVtD 368 (379)
-+.|.|++||-++|+| +.|...|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 4679999999999999 46788888764
No 100
>PRK09039 hypothetical protein; Validated
Probab=25.68 E-value=2.2e+02 Score=28.73 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=15.7
Q ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 017019 224 IDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVTE 262 (379)
Q Consensus 224 ~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~e 262 (379)
|+.||.+|..=|.+|.-++.+..+.+..|..|+..-...
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333333
No 101
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.00 E-value=2.1e+02 Score=21.52 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=25.5
Q ss_pred EEEEecCCceEEEEeeeCCCccccccCCCCCCCccccccccCCCcEEEEE-EeCCeEEEEEEEECC
Q 017019 291 EIQYSGDGEIVEVAGSFNGWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL-WLYPGTYEIKFIVDG 355 (379)
Q Consensus 291 TF~W~g~AkeVeVaGSFNnW~~~IpM~Kd~sss~~~~~~ske~GvWsltL-~LPPGrYEYKFIVDG 355 (379)
.+.-.-.+-.|+|-|.+-| . .|+ ++ .|++|.|.+++.-+|
T Consensus 5 ~V~s~p~gA~V~vdg~~~G-~--tp~----------------------~~~~l~~G~~~v~v~~~G 45 (71)
T PF08308_consen 5 RVTSNPSGAEVYVDGKYIG-T--TPL----------------------TLKDLPPGEHTVTVEKPG 45 (71)
T ss_pred EEEEECCCCEEEECCEEec-c--Ccc----------------------eeeecCCccEEEEEEECC
Confidence 3333344778999988777 1 121 12 277888888888777
No 102
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.41 E-value=2.1e+02 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=9.6
Q ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHH
Q 017019 227 LKFMLHQKEMELSRLKEQIEKEKLAL 252 (379)
Q Consensus 227 Lk~mlhqkElel~~~K~ele~~k~~L 252 (379)
++.++.+.+-++.+++.+.++.+.++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 103
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=24.30 E-value=3e+02 Score=22.47 Aligned_cols=59 Identities=24% Similarity=0.240 Sum_probs=33.2
Q ss_pred CceEEEEEEecC----CceEEEEeeeC-CCccccccCCCCCCCccccccccCCCcEEEEE--EeCCeEEEEEEEE---CC
Q 017019 286 GLEVVEIQYSGD----GEIVEVAGSFN-GWHHRIKMDPLPSSSIIEPIRSRKSRLWSTVL--WLYPGTYEIKFIV---DG 355 (379)
Q Consensus 286 gLkpVTF~W~g~----AkeVeVaGSFN-nW~~~IpM~Kd~sss~~~~~~ske~GvWsltL--~LPPGrYEYKFIV---DG 355 (379)
....|++++..+ ...|.|.+.-. .|....+ ........+.+.+ .|++|.|...|.| ||
T Consensus 18 ~P~~v~L~F~e~v~~~~s~v~v~~~~g~~v~~~~~------------~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DG 85 (97)
T PF04234_consen 18 APEEVTLTFSEPVEPGFSSVTVTDPDGKRVDLGEP------------TVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADG 85 (97)
T ss_dssp --SSEEEEESS---CCC-EEEEEEEEETTSCTCEE------------EEEESTTEEEEEESS---SEEEEEEEEEEETTS
T ss_pred CCCEEEEEeCCCCccCccEEEEEcCCCceeecCcc------------eecCCceEEEEECCCCCCCceEEEEEEEEecCC
Confidence 345677777764 57889987753 3322111 0111346777776 3899999999998 66
Q ss_pred E
Q 017019 356 Q 356 (379)
Q Consensus 356 e 356 (379)
.
T Consensus 86 H 86 (97)
T PF04234_consen 86 H 86 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.23 E-value=2e+02 Score=24.51 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=18.9
Q ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 017019 223 EIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQ 256 (379)
Q Consensus 223 e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~ 256 (379)
...+++..+++.+-++.+++.+-+..+.++..|+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555554444
No 105
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=24.17 E-value=2e+02 Score=21.27 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=21.0
Q ss_pred cCCCcEEEEEEeCCeEEEEEEEE--CCEeeeCC
Q 017019 331 RKSRLWSTVLWLYPGTYEIKFIV--DGQWKVDP 361 (379)
Q Consensus 331 ke~GvWsltL~LPPGrYEYKFIV--DGeW~~DP 361 (379)
..+|.|... .|+||.|..+.+. +|--..++
T Consensus 24 d~~G~~~f~-~L~~G~Y~l~E~~aP~GY~~~~~ 55 (70)
T PF05738_consen 24 DENGKYTFK-NLPPGTYTLKETKAPDGYQLDDT 55 (70)
T ss_dssp GTTSEEEEE-EEESEEEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEe-ecCCeEEEEEEEECCCCCEECCC
Confidence 357766554 6899999999998 67443333
No 106
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.76 E-value=1.3e+02 Score=29.00 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=26.9
Q ss_pred hhccHHHHHHHHHhhhHHHHHHhHHHHHHHH
Q 017019 217 RRENQLEIDHLKFMLHQKEMELSRLKEQIEK 247 (379)
Q Consensus 217 ~~~n~~e~~~Lk~mlhqkElel~~~K~ele~ 247 (379)
.++.+||+-+||+.|+.=|-.+.++..+.+.
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999988887765
No 107
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.68 E-value=29 Score=32.33 Aligned_cols=48 Identities=33% Similarity=0.426 Sum_probs=18.5
Q ss_pred cccccccchHHhhhccHHHHHHHHHhhhHHH---HHHhHHHHHHHHHHHHHHHHHHH
Q 017019 205 VEGADFDSSEARRRENQLEIDHLKFMLHQKE---MELSRLKEQIEKEKLALSVLQTK 258 (379)
Q Consensus 205 ~~d~~kdl~ea~~~~n~~e~~~Lk~mlhqkE---lel~~~K~ele~~k~~LsvL~tK 258 (379)
|+|++.+|-.|-.+ | ++|..=|-.|| -+.-|+|.|+...|.+| +++.|
T Consensus 2 LeD~EsklN~AIER-n----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek 52 (166)
T PF04880_consen 2 LEDFESKLNQAIER-N----ALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEK 52 (166)
T ss_dssp HHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHH-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45778888666666 5 66666665565 24568899999999988 44433
No 108
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.56 E-value=2.8e+02 Score=20.65 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 017019 221 QLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAV 260 (379)
Q Consensus 221 ~~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae 260 (379)
+.+.+.||+.-..=-.+..+++.|.++.++++..|.+++.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777777766667778888888888888888877764
No 109
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.32 E-value=2.3e+02 Score=22.92 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=12.7
Q ss_pred eEEEEEEecC-CceEEEEe
Q 017019 288 EVVEIQYSGD-GEIVEVAG 305 (379)
Q Consensus 288 kpVTF~W~g~-AkeVeVaG 305 (379)
.+|+|.|... +..|.+..
T Consensus 25 ~tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 25 DTVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEEESSSSBEEEEET
T ss_pred CEEEEEECCCCCceEEEec
Confidence 3688888754 67777765
No 110
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.47 E-value=2.6e+02 Score=25.25 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred cHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 017019 220 NQLEIDHLKFMLHQKEMELSRLKEQIEKEKLALSVL 255 (379)
Q Consensus 220 n~~e~~~Lk~mlhqkElel~~~K~ele~~k~~LsvL 255 (379)
.+.-++.|+..+-.|+.|...+|.+|++....-..|
T Consensus 92 yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 92 YEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666666666666666554444333
No 111
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.87 E-value=2.4e+02 Score=28.48 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=8.2
Q ss_pred hhhhhhhhcccc
Q 017019 262 EINKAEKLISDK 273 (379)
Q Consensus 262 eI~eAqklI~eK 273 (379)
+|.+|++.+.+.
T Consensus 254 ~I~~ae~~~~~~ 265 (312)
T smart00787 254 EIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHhc
Confidence 777777766554
No 112
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.80 E-value=1.4e+02 Score=35.35 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhhhHHHH----------------HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccchhHHHHHh
Q 017019 220 NQLEIDHLKFMLHQKEM----------------ELSRLKEQIEKEKLALSVLQTKAVTEINKAEKLISDKDEELIAAE 281 (379)
Q Consensus 220 n~~e~~~Lk~mlhqkEl----------------el~~~K~ele~~k~~LsvL~tKae~eI~eAqklI~eK~~~LdaAe 281 (379)
=..||.+||.||....+ +.-.+.++|.+.+..++.|+.-=++++.+|..+-++-...|..+-
T Consensus 366 LreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emG 443 (1221)
T KOG0245|consen 366 LREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMG 443 (1221)
T ss_pred HHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 35688999999987654 355678888889999999998888899999988877766655443
No 113
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=21.79 E-value=1e+02 Score=22.46 Aligned_cols=19 Identities=42% Similarity=0.791 Sum_probs=12.6
Q ss_pred CCeEEEEEEEE-----CCEeeeCC
Q 017019 343 YPGTYEIKFIV-----DGQWKVDP 361 (379)
Q Consensus 343 PPGrYEYKFIV-----DGeW~~DP 361 (379)
.||.|...|.. ||+...+|
T Consensus 11 ~PG~Y~l~~~a~~~~~~G~~~s~~ 34 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDGKVSSDP 34 (41)
T ss_pred CCeEEEEEEEEEEEeCCCcEecCC
Confidence 58888888876 66644443
No 114
>PF07898 DUF1676: Protein of unknown function (DUF1676); InterPro: IPR012464 This family contains sequences derived from proteins of unknown function expressed by Drosophila melanogaster and Anopheles gambiae.
Probab=21.46 E-value=1.1e+02 Score=24.89 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=33.5
Q ss_pred eeeeeeeeeeeeeCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCcCcccccchHHHHHHhhhhcCCcc
Q 017019 94 ENISLSTDVSFVKNPSKGSCIKTDLHSDIYSLPPTESLSDPSFVGEVSPNLNGHYEKADMEEKVANFIQNGDLD 167 (379)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~fiq~g~ld 167 (379)
.+|.+.-+|++|++|+...-.. .+.....++... ++..--..|-+|+.+|++.-.|-
T Consensus 13 d~i~l~dgv~lvr~~~~~~~~~----------~~~~~~~~~~~~-------~~~~l~~~l~~k~~~fl~th~L~ 69 (106)
T PF07898_consen 13 DSIKLTDGVSLVRNPEAAERSS----------EAESRSVDEEDS-------REEELDNLLLDKVERFLQTHSLR 69 (106)
T ss_pred CCEEecCCEEEEECCCCccccc----------cccccccccccc-------hhhHHHHHHHHHHHHHHHhceEE
Confidence 4689999999999997532100 000000111111 33344457889999999987653
No 115
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=21.30 E-value=2e+02 Score=30.68 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------Hhhhhhhhhhcccch
Q 017019 235 EMELSRLKEQIEKEKLALSVLQTKA-------VTEINKAEKLISDKD 274 (379)
Q Consensus 235 Elel~~~K~ele~~k~~LsvL~tKa-------e~eI~eAqklI~eK~ 274 (379)
|-|..||+..+++.+.+|..|..++ +.+|.+||.++.+-+
T Consensus 280 e~E~~Rl~~Al~~a~~eL~~l~~~~~~~~g~~~a~If~ah~~lL~D~ 326 (473)
T PRK11377 280 EEEQERLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDDP 326 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhCCH
Confidence 3445555555555555555555443 347888888776654
No 116
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.30 E-value=1.1e+02 Score=31.23 Aligned_cols=46 Identities=28% Similarity=0.225 Sum_probs=35.5
Q ss_pred hhhhhhcccchhHHHHHhhh---CCCceEEEEEEecCCceEEEEeeeCC
Q 017019 264 NKAEKLISDKDEELIAAEES---LSGLEVVEIQYSGDGEIVEVAGSFNG 309 (379)
Q Consensus 264 ~eAqklI~eK~~~LdaAeea---LsgLkpVTF~W~g~AkeVeVaGSFNn 309 (379)
.+|++|..+.+.+|.++... ....++|-|.+.+.|..+.++|+-++
T Consensus 152 ekae~La~~~~~~l~a~~~~~~~~~~~~~Vlfvls~~Gg~~~vaG~~t~ 200 (300)
T COG4558 152 EKAEKLAEQYEQRLEAVQANVAAKKEPKKVLFVLSHGGGAPLVAGKGTA 200 (300)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCCCceEeecCCcc
Confidence 46777777777777777654 33456799999999999999998764
No 117
>PRK09039 hypothetical protein; Validated
Probab=21.27 E-value=4.9e+02 Score=26.38 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhcccchhHHHHH
Q 017019 225 DHLKFMLHQKEMELSRLKEQIEKEKLALSVLQTKAVT---EINKAEKLISDKDEELIAA 280 (379)
Q Consensus 225 ~~Lk~mlhqkElel~~~K~ele~~k~~LsvL~tKae~---eI~eAqklI~eK~~~LdaA 280 (379)
+.+|..-...--...+++.||+..|.+|+.|++-.+. ...+++..|.+-..+|++|
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444432222 3334444444444444444
No 118
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.53 E-value=1.2e+02 Score=28.49 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=26.1
Q ss_pred hHHhhhccHHHHHHHHHhhhHHHHHHhHHHHHH
Q 017019 213 SEARRRENQLEIDHLKFMLHQKEMELSRLKEQI 245 (379)
Q Consensus 213 ~ea~~~~n~~e~~~Lk~mlhqkElel~~~K~el 245 (379)
.|..|. +.||.-|+..|+.||.+...+|+.|
T Consensus 36 ~EL~Kv--EeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 36 SELAKV--EEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 566666 6799999999999999999999874
No 119
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=20.15 E-value=2e+02 Score=31.04 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH-------HHhhhhhhhhhcccc
Q 017019 237 ELSRLKEQIEKEKLALSVLQTK-------AVTEINKAEKLISDK 273 (379)
Q Consensus 237 el~~~K~ele~~k~~LsvL~tK-------ae~eI~eAqklI~eK 273 (379)
|..||+..+++++.+|..|..+ .+.+|.+||.++.+-
T Consensus 38 E~~rl~~A~~~a~~eL~~l~~~~~~~~g~~~a~If~ah~~mL~D 81 (565)
T TIGR01417 38 EISRFLSARAKAKEDLETIKTKAGKTFGQEKAAIFEAHILILED 81 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHhCC
Confidence 3344444444444444444333 334688888776554
Done!