BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017020
(379 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic
[Vitis vinifera]
gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/333 (90%), Positives = 321/333 (96%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+ DEKLAE
Sbjct: 278 MLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAE 337
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 338 GIKLYAIPTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGD 397
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 398 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 457
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTV+SLERDVGCKFEF+SPP +E+VLESSAEQVVATLNGVHPES
Sbjct: 458 AGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPES 517
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEEKGT ALAAALA LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRG
Sbjct: 518 VEFFTPTAQKLIEEKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRG 577
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVYPTAADE+GKI+++AD+RV
Sbjct: 578 FLSARSVTGFLSDVYPTAADELGKIYLVADERV 610
>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/333 (87%), Positives = 317/333 (95%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 295 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 354
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 355 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 414
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGR
Sbjct: 415 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 474
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPES
Sbjct: 475 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPES 534
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRG
Sbjct: 535 VEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRG 594
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVYP AADE+GKIH+IAD+RV
Sbjct: 595 FLSARSVTGFLSDVYPAAADEVGKIHVIADERV 627
>gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 481
Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/333 (87%), Positives = 318/333 (95%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 1 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 60
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 61 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 120
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGR
Sbjct: 121 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 180
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPES
Sbjct: 181 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPES 240
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+HEQGW TLQLTRD +SRG
Sbjct: 241 VEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHEQGWATLQLTRDPTYSRG 300
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVYP AADE+GKIH+IAD+RV
Sbjct: 301 FLSARSVTGFLSDVYPAAADEVGKIHVIADERV 333
>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
Length = 735
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 293/333 (87%), Positives = 317/333 (95%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILE+LP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+++EKLAE
Sbjct: 258 MLSFGFEEDVEVILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAE 317
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAISTTATSKRTILSDL+TVYAKG KTI+FT+TKRDADEVS+ALT IASEALHGD
Sbjct: 318 GIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIASEALHGD 377
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 378 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 437
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFT+SQRRTVRSLERD GCKFEFVSPP +E++LESS EQVVATLNGVHPES
Sbjct: 438 AGKEGTAILMFTNSQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVVATLNGVHPES 497
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT ALAAALA LSGFSRPPSSRSLI+HEQGW TLQLTRD +SRG
Sbjct: 498 VEFFTPTAQKLIEEQGTSALAAALAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTYSRG 557
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVYP AADEIGKIH+IAD+RV
Sbjct: 558 FLSARSVTGFLSDVYPAAADEIGKIHLIADERV 590
>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 772
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/333 (87%), Positives = 318/333 (95%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 280 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 339
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIST ATSKR+ILSDL+TVYAKGGKTI+FTQTKRDADEVS+ LT+ IASEALHGD
Sbjct: 340 GIKLYAISTNATSKRSILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEALHGD 399
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 400 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 459
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTA+LMFTSSQRRTV+SLERDVGC+FEFVSPP E+VLESSAEQV+ATL+GVHPES
Sbjct: 460 AGKEGTAVLMFTSSQRRTVKSLERDVGCRFEFVSPPGTEEVLESSAEQVIATLSGVHPES 519
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V FFTPTAQRLIEE+GT ALAAALAQLSGFS+PPSSRSLI+HEQGW TLQLTRD ++SRG
Sbjct: 520 VGFFTPTAQRLIEEQGTSALAAALAQLSGFSQPPSSRSLISHEQGWTTLQLTRDPSYSRG 579
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVY AADE+GKIHIIAD++V
Sbjct: 580 FLSARSVTGFLSDVYTAAADEVGKIHIIADEKV 612
>gi|343172314|gb|AEL98861.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/333 (83%), Positives = 318/333 (95%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+W+KKLSRKYLDNPL IDLVG+++EKLAE
Sbjct: 287 MLAVGFEEDVEVILETLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAE 346
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIS+TA SKRT+LSD+ITVYAKGGKTIVFTQTKRDADEVSLAL++ I SEALHGD
Sbjct: 347 GIKLYAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGD 406
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKF+VLVATDVA+RGLDIPNVDL++HYE+PNDPETFVHRSGRTGR
Sbjct: 407 ISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGR 466
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTA+LM+TS+QRRTVRSLERDVGC FE+V P VE+VLESSA+QVVATL GVHP+S
Sbjct: 467 AGKEGTALLMYTSNQRRTVRSLERDVGCHFEYVGAPSVEEVLESSADQVVATLRGVHPDS 526
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FFTPTAQ+L+EE+GT ALAAA+A LSGFS+PPS++SL++HEQGWVTLQL+RDS FSRG
Sbjct: 527 IKFFTPTAQKLLEEQGTGALAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDSVFSRG 586
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+MSARSVMGFLSDVYPTAADE+GKI +IAD+RV
Sbjct: 587 YMSARSVMGFLSDVYPTAADEVGKIQLIADERV 619
>gi|343172316|gb|AEL98862.1| DEAD-box ATP-dependent RNA helicase, partial [Silene latifolia]
Length = 782
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 277/333 (83%), Positives = 316/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+W+KKLSRKYLDNPL IDLVG+++EKLAE
Sbjct: 287 MLAVGFEEDVEVILEKLPKERQSMLFSATMPTWIKKLSRKYLDNPLTIDLVGDREEKLAE 346
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIS+TA SKRT+LSD+ITVYAKGGKTIVFTQTKRDADEVSLAL++ I SEALHGD
Sbjct: 347 GIKLYAISSTAASKRTMLSDVITVYAKGGKTIVFTQTKRDADEVSLALSNSIPSEALHGD 406
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKF+VLVATDVA+RGLDIPNVDL++HYE+PNDPETFVHRSGRTGR
Sbjct: 407 ISQHQRERTLNGFRQGKFSVLVATDVASRGLDIPNVDLVVHYEMPNDPETFVHRSGRTGR 466
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTA+LM+TS+QRRTVRSLERDVGC F +V P VE+VL SSA+QVVATL GVHPES
Sbjct: 467 AGKEGTALLMYTSNQRRTVRSLERDVGCHFGYVGAPSVEEVLVSSADQVVATLRGVHPES 526
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FFTPTAQ+L+EE+GT ALAAA+A LSGFS+PPS++SL++HEQGWVTLQL+RDS FSRG
Sbjct: 527 IKFFTPTAQKLLEEQGTGALAAAIAHLSGFSQPPSAKSLLSHEQGWVTLQLSRDSVFSRG 586
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+MSARSVMGFLSDVYPTAADE+GKI +IAD+RV
Sbjct: 587 YMSARSVMGFLSDVYPTAADEVGKIQLIADERV 619
>gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/333 (87%), Positives = 316/333 (94%), Gaps = 1/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILENLP +RQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 272 MLAVGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 331
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+ TATSKRTILSDL+TVYAKGGKTIVFTQTKRDADEVSL+LT+ I SEALHGD
Sbjct: 332 GIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGD 391
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 392 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 451
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+G AIL++TSSQRRTVRSLERDVGCKFEFVS P +E+VLESSAEQVVATL GVHPES
Sbjct: 452 AGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPES 511
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FFTPTAQRLIEE+GT ALAAALAQLSGFSRPPSSRSLI HEQGW+TLQLTRDS SR
Sbjct: 512 VQFFTPTAQRLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRR 570
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+ SARS+ GFLSDVYP AADE+GKIH+IAD++V
Sbjct: 571 YFSARSITGFLSDVYPAAADEVGKIHLIADEKV 603
>gi|356572874|ref|XP_003554590.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 771
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 290/333 (87%), Positives = 315/333 (94%), Gaps = 1/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILENLP +RQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 271 MLAVGFEEDVEMILENLPSQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 330
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+ TATSKRTILSDL+TVYAKGGKTIVFTQTKRDADEVSL+LT+ I SEALHGD
Sbjct: 331 GIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGD 390
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 391 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 450
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+G AIL++TSSQRRTVRSLERDVGCKFEFVS P +E+VLE+SAEQVVATL GVHPES
Sbjct: 451 AGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSSPAMEEVLEASAEQVVATLCGVHPES 510
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FFTPTAQ+LIEE+GT ALAAALAQLSGFSRPPSSRSLI HEQGW+TLQLTRDS SR
Sbjct: 511 VQFFTPTAQKLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRR 569
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+ SARSV GFLSDVY AADE+GKIH+IAD+RV
Sbjct: 570 YFSARSVTGFLSDVYSAAADEVGKIHLIADERV 602
>gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
truncatula]
gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 753
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/333 (87%), Positives = 312/333 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP KRQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 268 MLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 327
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIS T+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT+ I SEALHGD
Sbjct: 328 GIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGD 387
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 388 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 447
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT SQRRTVRSLERDVGCKFEFV+ P VEDVLESSAEQVV TLNGVHPES
Sbjct: 448 AGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPES 507
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+ FFTPTAQ+LIEEKGT ALAAALAQ+SGFS+PPSSRSLI HEQGWVTLQLTRDS S+
Sbjct: 508 IAFFTPTAQKLIEEKGTTALAAALAQMSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQR 567
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+ SARSV GFLSDVY AADE+GK+H+IAD+RV
Sbjct: 568 YFSARSVTGFLSDVYSKAADEVGKVHLIADERV 600
>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
Length = 786
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 300/380 (78%), Positives = 321/380 (84%), Gaps = 47/380 (12%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL---------- 50
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+WVKKL+RKYLDNPL IDL
Sbjct: 278 MLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLN 337
Query: 51 -------------VGNQDEKLAEGIKLYAISTTATSKRTILSDLIT-------------- 83
VG+ DEKLAEGIKLYAI TTATSKRTILSDLIT
Sbjct: 338 LEPPKNPPQTLDHVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGH 397
Query: 84 -VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 142
VYAKGGKTIVFTQTKRDADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLV
Sbjct: 398 KVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLV 457
Query: 143 ATDVAARGLDIPNVDL---------IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193
ATDVAARGLDIPNVDL IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS
Sbjct: 458 ATDVAARGLDIPNVDLKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 517
Query: 194 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE 253
SQRRTV+SLERDVGCKFEF+SPP +E+VLESSAEQVVATLNGVHPESVEFFTPTAQ+LIE
Sbjct: 518 SQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIE 577
Query: 254 EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 313
EKGT ALAAALA LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRGF+SARSV GFLSD
Sbjct: 578 EKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSD 637
Query: 314 VYPTAADEIGKIHIIADDRV 333
VYPTAADE+GKI+++AD+RV
Sbjct: 638 VYPTAADELGKIYLVADERV 657
>gi|79328737|ref|NP_001031943.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|108861893|sp|Q8L7S8.2|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
Precursor
gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 748
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/333 (85%), Positives = 314/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSD+Y TAADE+GKI +IADDR+
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRI 596
>gi|30690260|ref|NP_680225.2| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 747
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/333 (85%), Positives = 314/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSD+Y TAADE+GKI +IADDR+
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRI 596
>gi|334187954|ref|NP_001190402.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
Length = 655
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/333 (85%), Positives = 314/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 171 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 230
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 231 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 290
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 291 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 350
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 351 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 410
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 411 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 470
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSD+Y TAADE+GKI +IADDR+
Sbjct: 471 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRI 503
>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 748
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/333 (85%), Positives = 313/333 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLN VHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNAVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVY TAADE+GKI +IADDRV
Sbjct: 564 FLSARSVTGFLSDVYRTAADEVGKIFLIADDRV 596
>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
Length = 748
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/333 (85%), Positives = 314/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSD+Y TAADE+GKI +IADDR+
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRI 596
>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
Length = 748
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/333 (84%), Positives = 313/333 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGK IVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKNIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSD+Y TAADE+GKI +IADDR+
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRI 596
>gi|449517104|ref|XP_004165586.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like, partial [Cucumis sativus]
Length = 726
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/333 (85%), Positives = 314/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQ+MLFSATMP+WVKKL+RKYLDNPL IDLVG+QDEKLAE
Sbjct: 273 MLAVGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAE 332
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKL+AI TTATSK+TIL DL+TVYAKGGKTIVFTQTKRDADEVSLAL + I SEALHGD
Sbjct: 333 GIKLHAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGD 392
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 393 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 452
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFT+SQRRTVRSLERDVGCKFEF +PP +E+VL+SSAEQVV TL GVHPES
Sbjct: 453 AGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPES 512
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+E+FTPTAQ+LI+E+G ALAAALAQLSGF+ PPSSRSLINHEQGWVTLQLTRD ++SRG
Sbjct: 513 IEYFTPTAQKLIDEQGLGALAAALAQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRG 572
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVY AADEIGKIH+IAD+R+
Sbjct: 573 FLSARSVTGFLSDVYSPAADEIGKIHLIADERI 605
>gi|449435589|ref|XP_004135577.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Cucumis sativus]
Length = 748
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/333 (85%), Positives = 314/333 (94%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQ+MLFSATMP+WVKKL+RKYLDNPL IDLVG+QDEKLAE
Sbjct: 273 MLAVGFEEDVEVILEKLPSQRQNMLFSATMPTWVKKLARKYLDNPLTIDLVGDQDEKLAE 332
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKL+AI TTATSK+TIL DL+TVYAKGGKTIVFTQTKRDADEVSLAL + I SEALHGD
Sbjct: 333 GIKLHAILTTATSKQTILRDLVTVYAKGGKTIVFTQTKRDADEVSLALANSITSEALHGD 392
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 393 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 452
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFT+SQRRTVRSLERDVGCKFEF +PP +E+VL+SSAEQVV TL GVHPES
Sbjct: 453 AGKEGTAILMFTNSQRRTVRSLERDVGCKFEFANPPGMEEVLKSSAEQVVVTLRGVHPES 512
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+E+FTPTAQ+LI+E+G ALAAALAQLSGF+ PPSSRSLINHEQGWVTLQLTRD ++SRG
Sbjct: 513 IEYFTPTAQKLIDEQGLGALAAALAQLSGFTHPPSSRSLINHEQGWVTLQLTRDPSYSRG 572
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F+SARSV GFLSDVY AADEIGKIH+IAD+R+
Sbjct: 573 FLSARSVTGFLSDVYSPAADEIGKIHLIADERI 605
>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
Length = 779
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 303/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 285 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 344
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 345 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 404
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 405 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 464
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 465 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 524
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 525 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 584
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI + AD++V
Sbjct: 585 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKV 617
>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 597
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 303/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 103 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 162
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 163 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 222
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 223 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 282
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 283 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 342
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 343 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 402
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI + AD++V
Sbjct: 403 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKV 435
>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
gi|113550244|dbj|BAF13687.1| Os03g0827700, partial [Oryza sativa Japonica Group]
Length = 723
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 303/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 229 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 288
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 289 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 348
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 349 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 408
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 409 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 468
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 469 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 528
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI + AD++V
Sbjct: 529 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKV 561
>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
Length = 596
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 303/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 103 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 162
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 163 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 222
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 223 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 282
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 283 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 342
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 343 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 402
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI + AD++V
Sbjct: 403 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKV 435
>gi|143455890|sp|Q0DM51.2|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
Flags: Precursor
gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
Length = 758
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 303/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 324 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 444 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 504 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI + AD++V
Sbjct: 564 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKV 596
>gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 284/333 (85%), Positives = 308/333 (92%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+ +P +RQ+MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAE
Sbjct: 253 MLAVGFEEDVEVILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAE 312
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ TATSKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGD
Sbjct: 313 GIKLYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGD 372
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGR
Sbjct: 373 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGR 432
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILM+TSSQRRTVRSLERDVG KFEFVSPP VE++LESSAEQVVATLN VHPES
Sbjct: 433 AGKEGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAVEEILESSAEQVVATLNRVHPES 492
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFT TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQLTRDS S
Sbjct: 493 VEFFTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGR 552
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+ SARSV GFLSDVY AADE+GKIH+IAD+RV
Sbjct: 553 YFSARSVTGFLSDVYSQAADEVGKIHLIADERV 585
>gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Glycine max]
Length = 736
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/333 (84%), Positives = 308/333 (92%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+ +P +RQ+MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAE
Sbjct: 255 MLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA+SKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGD
Sbjct: 315 GIKLYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGR
Sbjct: 375 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILM+TSSQRRTVRSLERDVGCKFEFVSPP +E++LESSAEQVVATLN VHPES
Sbjct: 435 AGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPES 494
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FF TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQLTRD S
Sbjct: 495 VDFFIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSAR 554
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+ SARSV GFLSDVY AADE+GKIH+IAD+RV
Sbjct: 555 YFSARSVTGFLSDVYSPAADEVGKIHLIADERV 587
>gi|357122984|ref|XP_003563193.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 2 [Brachypodium distachyon]
Length = 749
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/333 (82%), Positives = 304/333 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 254 MLAVGFEEDVETILQQLPAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 313
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T TSKRTILSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 314 GIKLYAIPLTVTSKRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGD 373
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 374 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 433
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK G AILMFT++QRRTV+SLERDVGC+FEF+ PP +E+VL+SSAE V+ATL GVH ES
Sbjct: 434 AGKAGNAILMFTNNQRRTVKSLERDVGCRFEFIGPPTMEEVLDSSAEHVIATLRGVHQES 493
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA ALA LSGFS+PPSSRSLI+HEQG VTLQLTRD A++RG
Sbjct: 494 IQYFIPAAERLSEELGPNALATALAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPAYARG 553
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV P AADE+GKI++IAD+RV
Sbjct: 554 FFSPRSVTGFLSDVSPAAADEVGKIYLIADERV 586
>gi|357122982|ref|XP_003563192.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like isoform 1 [Brachypodium distachyon]
Length = 769
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/333 (82%), Positives = 304/333 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 254 MLAVGFEEDVETILQQLPAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 313
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T TSKRTILSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 314 GIKLYAIPLTVTSKRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTASIASEALHGD 373
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 374 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 433
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK G AILMFT++QRRTV+SLERDVGC+FEF+ PP +E+VL+SSAE V+ATL GVH ES
Sbjct: 434 AGKAGNAILMFTNNQRRTVKSLERDVGCRFEFIGPPTMEEVLDSSAEHVIATLRGVHQES 493
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA ALA LSGFS+PPSSRSLI+HEQG VTLQLTRD A++RG
Sbjct: 494 IQYFIPAAERLSEELGPNALATALAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPAYARG 553
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV P AADE+GKI++IAD+RV
Sbjct: 554 FFSPRSVTGFLSDVSPAAADEVGKIYLIADERV 586
>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
Length = 744
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/333 (82%), Positives = 300/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 248 MLAVGFEEDVETILQQLPAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 307
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI TATSKRT+LSDLITVYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGD
Sbjct: 308 GIKLYAIPLTATSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGD 367
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 368 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 427
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFTSSQ+RTV+SLERDVGC FEF+SPP +E+VLESSAE V+ATL GVHPES
Sbjct: 428 AGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPES 487
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++F A++L EE G ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTR+ F RG
Sbjct: 488 TKYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRG 547
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI++ AD+ V
Sbjct: 548 FFSPRSVTGFLSDVCSAAADEVGKIYLTADENV 580
>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 272/333 (81%), Positives = 304/333 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 251 MLAVGFEEDVETILQQLPAERQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 310
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKL+AI T TSKRTILSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 311 GIKLFAIPLTTTSKRTILSDLITVYAKGGKTIVFTRTKRDADEVSLALTTSIASEALHGD 370
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 371 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 430
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK G AILMFT++QRRTV+SLERDVGCKFEF+ PP +E+VL+SSAE V+ATL GVHPES
Sbjct: 431 AGKAGNAILMFTTNQRRTVKSLERDVGCKFEFIGPPTMEEVLDSSAEHVIATLRGVHPES 490
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL +E G ALA+ALA LSGFS+PPSSRSLI+HEQG VTLQLTRD ++RG
Sbjct: 491 IQYFVPAAERLSQELGPTALASALAHLSGFSQPPSSRSLISHEQGSVTLQLTRDPEYARG 550
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV P+AAD +GKI++IAD+RV
Sbjct: 551 FFSPRSVTGFLSDVSPSAADAVGKIYLIADERV 583
>gi|212274773|ref|NP_001130659.1| uncharacterized protein LOC100191761 [Zea mays]
gi|194689766|gb|ACF78967.1| unknown [Zea mays]
Length = 598
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/333 (81%), Positives = 299/333 (89%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 103 MLAVGFEEDVETILQQLPAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 162
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T TSKRT+LSDLITVYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGD
Sbjct: 163 GIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGD 222
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 223 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 282
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFTSSQ+RTV+SLERDVGC FEF+SPP +E+VLESSAE V+ATL GVHPES
Sbjct: 283 AGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPES 342
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++F A++L EE G ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTR+ F RG
Sbjct: 343 TKYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRG 402
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI++ AD+ V
Sbjct: 403 FFSPRSVTGFLSDVCSAAADEVGKIYLTADENV 435
>gi|414873743|tpg|DAA52300.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 743
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/333 (81%), Positives = 299/333 (89%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 248 MLAVGFEEDVETILQQLPAGRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 307
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T TSKRT+LSDLITVYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGD
Sbjct: 308 GIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIVFTRTKKDADEVSLALTNSIASEALHGD 367
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 368 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 427
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFTSSQ+RTV+SLERDVGC FEF+SPP +E+VLESSAE V+ATL GVHPES
Sbjct: 428 AGKAGTAILMFTSSQKRTVKSLERDVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPES 487
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++F A++L EE G ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTR+ F RG
Sbjct: 488 TKYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRG 547
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI++ AD+ V
Sbjct: 548 FFSPRSVTGFLSDVCSAAADEVGKIYLTADENV 580
>gi|413932546|gb|AFW67097.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 745
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/333 (82%), Positives = 300/333 (90%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP RQSMLFSATMPSWVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 248 MLAVGFEEDVETILQQLPADRQSMLFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAE 307
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKL+AI TATSKRTILSDLITVYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGD
Sbjct: 308 GIKLHAIPLTATSKRTILSDLITVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGD 367
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 368 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 427
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFTSSQ+RTV SLERDVGCKFEF+SPP +E+VLESSAE V+ATL GVHPES
Sbjct: 428 AGKAGTAILMFTSSQKRTVMSLERDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPES 487
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++F A++L EE G ALA+ALA LSGFS+PPSSRSLI++EQGWVTLQLTR+ + RG
Sbjct: 488 TQYFLGAAEKLTEELGPHALASALAHLSGFSQPPSSRSLISYEQGWVTLQLTREPGYGRG 547
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
F S RSV GFLSDV AADE+GKI+I AD+ V
Sbjct: 548 FFSPRSVTGFLSDVCSAAADEVGKIYITADENV 580
>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
Length = 802
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/337 (70%), Positives = 284/337 (84%), Gaps = 4/337 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+NLP +RQSMLFSATMP WVKKLSRK+L+NP+ IDLVG +EKLAE
Sbjct: 306 MLAVGFEEDVEIILDNLPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAE 365
Query: 61 GIKLYAISTT--ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALH 118
GIKLYA++TT + SKR+IL DLITV+AKGGKTIVFTQTKRDADE+SL L+S IA EALH
Sbjct: 366 GIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALH 425
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GDISQHQRERTL GFR+GKF+ LVATDVAARGLDI NVDL+IHYE PNDPETFVHRSGRT
Sbjct: 426 GDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRT 485
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAGKEG AILM+ S+ +R VRSLE +VGC+FE+++PP EDVLE+S + V L VHP
Sbjct: 486 GRAGKEGIAILMYPSNGKRKVRSLEHEVGCRFEYINPPRQEDVLETSTQHVAKALGSVHP 545
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298
E + F PTA +L+EEKGT+ALAAALA+LSGFS+PPSSRSLI HE+GW TLQ+TR+S
Sbjct: 546 ELINIFLPTANKLMEEKGTNALAAALARLSGFSQPPSSRSLITHEEGWTTLQMTRESTMP 605
Query: 299 RGF--MSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
G ++AR +MG LS+++P AAD++GKI D +
Sbjct: 606 DGRQQLNARELMGILSEMWPAAADKVGKIRTYGDGKA 642
>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 793
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/334 (65%), Positives = 266/334 (79%), Gaps = 6/334 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE ILE +P +RQSMLFSATMP+WVKKLSRKYL + L IDLVG DEKLA+
Sbjct: 299 MLAVGFEEDVEQILEQMPNQRQSMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLAD 358
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
IKLYA++T +KR+IL+DLI VY KGGKTIVFTQTKRDAD+V+ A+ + EALHGD
Sbjct: 359 RIKLYAVATVPQAKRSILNDLIAVYGKGGKTIVFTQTKRDADDVATAMARTLGCEALHGD 418
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRE+TLN FR+G F+VLVATDVAARGLDIPNVDL+IHYE+PNDPETFVHRSGRTGR
Sbjct: 419 ISQSQREKTLNAFREGNFSVLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGR 478
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+GTAILM++ Q RT+R +ERDVGCKF +S P VEDVL++S E + VHPE
Sbjct: 479 AGKDGTAILMYSDRQTRTMRLIERDVGCKFTKISAPRVEDVLKASTESATDVIKRVHPEV 538
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
E F PTA+ L++E+G A AAALA L+GF++ P+SRSL+ HE+G TL+L R RG
Sbjct: 539 AEVFMPTAEELLKEQGPHAFAAALAHLAGFTQLPTSRSLLTHEEGVTTLRLVR----PRG 594
Query: 301 F--MSARSVMGFLSDVYPTAADEIGKIHIIADDR 332
M+ R VMG LSD++PTA D++GKI I+ D +
Sbjct: 595 SRPMTPRVVMGVLSDIWPTAVDKVGKIKIVDDQK 628
>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 638
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/333 (63%), Positives = 258/333 (77%), Gaps = 2/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP RQSMLFSATMP WVK+LS KYL+ PL I+LVG+ D+KLAE
Sbjct: 186 MLAVGFEEDVERILQQLPKNRQSMLFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAE 245
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI AI AT+KR+ILSDLITV+AKGGKTIVFTQTKRDAD+V++A+ +++A ALHGD
Sbjct: 246 GITNLAIQLPATAKRSILSDLITVHAKGGKTIVFTQTKRDADDVAMAMGNLVACGALHGD 305
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRE+TLN FR+G TVLVATDVAARGLD+PNVDL+IHYE+PND ETFVHR+GRTGR
Sbjct: 306 ISQLQREKTLNAFREGNITVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGR 365
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GT ILMFT+ Q RT+R++E +V C+F+ + P V+DV+++S +QV L V
Sbjct: 366 AGKTGTNILMFTNQQMRTMRTIESNVKCRFQMIGAPHVKDVMQASFDQVRGALKNVDESL 425
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
F PTA+ L+EEKG DA AAALA LSGFS+ P SRSL+ HE G TL+L R R
Sbjct: 426 AAEFRPTAESLLEEKGPDAFAAALAHLSGFSQLPPSRSLLTHEPGMTTLRLMRSGG--RP 483
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
++AR V G LS + +AAD +GKI II D RV
Sbjct: 484 ALNARGVSGVLSGLSRSAADSVGKICIIDDRRV 516
>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/333 (62%), Positives = 267/333 (80%), Gaps = 1/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE ILE +P +RQSMLFSATMP+WVKKLS+KYL +PL IDLVG+ +EKLAE
Sbjct: 209 MLAVGFEEDVERILEQMPEERQSMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAE 268
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIK+ A+ +KRT+L+DLI+V+ GKTIVFTQTKRDAD+V+ L + EALHGD
Sbjct: 269 GIKMLAVCIPPAAKRTVLNDLISVHGSVGKTIVFTQTKRDADDVASVLGRTLGCEALHGD 328
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL FR+G+F+VLVATDVAARGLDIPNVDL++HYE+PNDPETFVHRSGRTGR
Sbjct: 329 ITQSQRERTLASFREGRFSVLVATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGR 388
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+GTAILMF+ +Q+RT+R++E DVGCKF +SPP +E+VL++S++ A + V+P+
Sbjct: 389 AGKDGTAILMFSENQKRTMRNIEMDVGCKFTLMSPPQMEEVLQASSKAAKAVIQRVNPDV 448
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
F TA++L+E++G A AAALA LSGFS+ P+ RSLI HE+G +TL++ R R
Sbjct: 449 ANVFLSTAEKLLEKEGPGAFAAALAHLSGFSQLPAPRSLITHEEGLITLRMVRTEELPRA 508
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
MSAR VMG L+D++ AAD +GKI II D ++
Sbjct: 509 -MSARMVMGVLADIWDAAADNVGKIRIIDDPKI 540
>gi|413932547|gb|AFW67098.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 449
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/252 (80%), Positives = 225/252 (89%)
Query: 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVL 141
+ VYAKGGKTIVFT+TK+DADEVSLALT+ IASEALHGDISQHQRERTLNGFRQGKFTVL
Sbjct: 33 LRVYAKGGKTIVFTRTKKDADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGKFTVL 92
Query: 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201
VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFTSSQ+RTV S
Sbjct: 93 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVMS 152
Query: 202 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALA 261
LERDVGCKFEF+SPP +E+VLESSAE V+ATL GVHPES ++F A++L EE G ALA
Sbjct: 153 LERDVGCKFEFISPPSIEEVLESSAEHVIATLRGVHPESTQYFLGAAEKLTEELGPHALA 212
Query: 262 AALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 321
+ALA LSGFS+PPSSRSLI++EQGWVTLQLTR+ + RGF S RSV GFLSDV AADE
Sbjct: 213 SALAHLSGFSQPPSSRSLISYEQGWVTLQLTREPGYGRGFFSPRSVTGFLSDVCSAAADE 272
Query: 322 IGKIHIIADDRV 333
+GKI+I AD+ V
Sbjct: 273 VGKIYITADENV 284
>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 619
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/333 (63%), Positives = 256/333 (76%), Gaps = 2/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVK+LSRKYL+ PL IDLVG+ DEKLA+
Sbjct: 164 MLAVGFEEDVERILQQLPKQRQSMLFSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLAD 223
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIK AI A++KR+ILSDLITV+ KGGKTIVFTQTKRDAD+V++A+ ++++ ALHGD
Sbjct: 224 GIKNLAIQLPASAKRSILSDLITVHGKGGKTIVFTQTKRDADDVAMAMGNLVSCGALHGD 283
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRE+TL+ FR GK VLVATDVAARGLD+PNVDL+IHYE+PND ETFVHR+GRTGR
Sbjct: 284 ISQVQREKTLSAFRDGKIAVLVATDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGR 343
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AG+ GT ILMFTS Q RT+R++E +V CKF+ V P V DV+ +S EQV L V
Sbjct: 344 AGRSGTNILMFTSQQVRTMRTIENNVKCKFQIVGLPHVRDVMRASFEQVKGALENVDASL 403
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
F PTA+ L+EEKG D AAALA LSGFS+ P SRSL+ +E G T++L R A R
Sbjct: 404 AAEFRPTAESLLEEKGPDVFAAALAHLSGFSQLPPSRSLLTYEPGMTTVRLVRTGA--RP 461
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
+SAR+V LS + AAD +GKI II + ++
Sbjct: 462 PLSARAVSAVLSGMSRPAADRVGKICIIDEQKM 494
>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
Length = 641
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/333 (60%), Positives = 257/333 (77%), Gaps = 2/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE I+E LP KRQ+MLFSATMP WV+KLSRK+L+ PL IDLVG DEKLAE
Sbjct: 181 MLAVGFEEDVEKIMEQLPEKRQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAE 240
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ T+ +KR ILSD+ITVY KGGKTIVFTQTKRDA+EVS+A+ + EALHGD
Sbjct: 241 GIKLYAVQTSQAAKRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGD 300
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRE+TL FR+G+F +LVATDVAARGLDI +VDLIIHY+LP D ETFVHRSGRTGR
Sbjct: 301 IAQFQREKTLAAFREGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGR 360
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+G+A++ F+ +RR ++ ER VGC F+F S P ++VL +S+ Q V + GVHP+
Sbjct: 361 AGKDGSALVFFSPQERRILKHFERQVGCSFQFKSMPHFDEVLAASSSQAVELIKGVHPDL 420
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+ F TA++L+EE GT A AAA+A +SGFS+PP RSLI+ E G++TL+ +R A
Sbjct: 421 KQVFMATAEKLLEEHGTAAFAAAIAHMSGFSQPPEQRSLISLEAGYMTLKFSR--APGNF 478
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
++ R V+G ++ + AAD IGK+ +I + V
Sbjct: 479 PLAVRHVVGAIASLSEKAADNIGKVQMIDEKNV 511
>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
Length = 640
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/333 (60%), Positives = 257/333 (77%), Gaps = 2/333 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE I+E LP KRQ+MLFSATMP WV+KLSRK+L+ PL IDLVG DEKLAE
Sbjct: 163 MLAVGFEEDVEKIMEQLPEKRQNMLFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAE 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ T+ +KR ILSD+ITVY KGGKTIVFTQTKRDA+EVS+A+ + EALHGD
Sbjct: 223 GIKLYAVQTSQAAKRKILSDVITVYGKGGKTIVFTQTKRDAEEVSMAMNRTLGCEALHGD 282
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRE+TL FR+G+F +LVATDVAARGLDI +VDLIIHY+LP D ETFVHRSGRTGR
Sbjct: 283 IAQFQREKTLAAFREGRFLILVATDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGR 342
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+G+A++ F+ +RR ++ ER VGC F+F S P ++VL +S+ Q V + GVHP+
Sbjct: 343 AGKDGSALVFFSPQERRILKHFERQVGCSFQFKSMPHFDEVLAASSSQAVELIKGVHPDL 402
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+ F TA++L++E GT A AAA+A +SGFS+PP RSLI+ E G++TL+ +R A
Sbjct: 403 KQVFMATAEKLLDEHGTAAFAAAIAHMSGFSQPPEQRSLISLEAGYMTLKFSR--APGNF 460
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
++ R V+G ++ + AAD IGK+ +I + V
Sbjct: 461 PLAVRHVVGAIASLSEKAADNIGKVQMIDEKNV 493
>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
(Pfam: helicase_C.hmm, score: 90.11), similar to
DEAD-box h, partial [Arabidopsis thaliana]
Length = 477
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/212 (91%), Positives = 205/212 (96%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 266 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 325
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 326 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 385
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 386 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 445
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF
Sbjct: 446 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEF 477
>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
Length = 597
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/315 (59%), Positives = 242/315 (76%), Gaps = 5/315 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF E+VE I++ LP +R +MLFSATMPSW++ L+ KYL NP IDLVG ++K+AE
Sbjct: 164 MLAVGFAEEVERIMQKLPLQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAE 223
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ST +K +L+DL+TVYAKGGK IVFT+TKRD D+V+ ++ I EALHGD
Sbjct: 224 GIKLYAVSTNDLAKNKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGD 283
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRE+TL+GFR G+F VLVATDVAARGLDIPNVDLI+HYE+P D ETFVHRSGRTGR
Sbjct: 284 ISQYQREKTLSGFRDGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGR 343
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+GT ILM+T +Q+R +R++E +VGCKFE + PP EDVL SS++ ++ VHP+
Sbjct: 344 AGKKGTCILMYTLNQKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDL 403
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT-----RDS 295
+ F P AQ+L+EE+G +ALAAA+A +SG ++ P RSL+ +E+G++TLQLT S
Sbjct: 404 AKLFLPAAQKLLEEQGVNALAAAMAHVSGVTQLPPKRSLLTYEEGYMTLQLTGGNLIDSS 463
Query: 296 AFSRGFMSARSVMGF 310
A S M S G
Sbjct: 464 AVSSAVMQLSSKAGM 478
>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
Length = 614
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/315 (59%), Positives = 241/315 (76%), Gaps = 5/315 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF E+VE I++ LP +R +MLFSATMPSW++ L+ KYL NP IDLVG ++K+AE
Sbjct: 164 MLAVGFAEEVERIMQKLPLQRHTMLFSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAE 223
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ST +K +L+DL+TVYAKGGK IVFT+TKRD D+V+ ++ I EALHGD
Sbjct: 224 GIKLYAVSTNDLAKNKLLADLLTVYAKGGKAIVFTKTKRDTDDVAAVMSRSIGCEALHGD 283
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRE+TL+GFR G+F VLVATDVAARGLDIPNVDLI+HYE+P D ETFVHRSGRTGR
Sbjct: 284 ISQYQREKTLSGFRDGRFNVLVATDVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGR 343
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+GT ILM+T +Q+R +R++E +VGCKFE + PP EDVL SS++ ++ VHP+
Sbjct: 344 AGKKGTCILMYTLNQKRVLRTIESEVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDL 403
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT-----RDS 295
+ F P AQ+L+EE+G ALAAA+A +SG ++ P RSL+ +E+G++TLQLT S
Sbjct: 404 AKLFLPAAQKLLEEQGVTALAAAMAHVSGVTQLPPKRSLLTYEEGYMTLQLTGGNLIDSS 463
Query: 296 AFSRGFMSARSVMGF 310
A S M S G
Sbjct: 464 AVSSAVMQLSSKAGM 478
>gi|357442015|ref|XP_003591285.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480333|gb|AES61536.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 615
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/234 (76%), Positives = 210/234 (89%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILE++P +RQ MLFSATMP WVKKLSRK+L+NPL IDLVG+++EKLAE
Sbjct: 248 MLAVGFEESVEEILESIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAE 307
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S T+TSKR IL LI+ YA GGKTIVFT+TKRDADE+SL+LT+ IAS+ LHGD
Sbjct: 308 GIKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGD 367
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRE+TLNGFRQG+FTVLVATDVA+RGLDIPNVDLIIHYELP+ PETFVHRSGRTGR
Sbjct: 368 ISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGR 427
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
AGKEGTA++M+T+SQ+RTV S ER+VGC FEF+SPP ++D+ ESS QVV T +
Sbjct: 428 AGKEGTAVVMYTTSQKRTVISFEREVGCTFEFISPPPMQDLPESSTRQVVPTFD 481
>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
Length = 402
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/234 (76%), Positives = 206/234 (88%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE ILE +P +RQ MLFSATMP WVKKLSRK+L+NP IDLVG+++EKLAE
Sbjct: 45 MLAVGFEEDVESILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAE 104
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ T+ SKR ILS LI+ Y KGGKTIVFT+TKRDADE+S +LTS IAS+ALHGD
Sbjct: 105 GIKLYAVPATSISKRRILSGLISAYGKGGKTIVFTRTKRDADEISYSLTSSIASKALHGD 164
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFRQG+FTVLVATDVA+RGLDIPNVDLIIHYELP+ PETFVHRSGRTGR
Sbjct: 165 ISQYQRERTLDGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGR 224
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
AGKEG A++MFT+SQ+RTV SLERDVG +FEF+ PP +ED+ E QVV+TL
Sbjct: 225 AGKEGAAVVMFTASQKRTVISLERDVGSRFEFIRPPPMEDLPELPTRQVVSTLG 278
>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
Length = 790
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 172/347 (49%), Positives = 243/347 (70%), Gaps = 18/347 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE I+E +P +RQ+ LFSATMPSWV ++++KYL + + IDLVG+Q++K+A+
Sbjct: 292 MLAVGFEEDVERIMEEIPEQRQTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVAD 351
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
I + + + + TS+ TIL+DL+TVY KG K I FTQTKR+ADEV+ AL +A+E LHGD
Sbjct: 352 TIDVMSCACSHTSRTTILADLVTVYGKGAKAICFTQTKREADEVTAALGRRMATEVLHGD 411
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL FR G+F+VLVATDVAARGLDI +VDL++HYELP+D E+FVHR GRTGR
Sbjct: 412 IAQAQRERTLKRFRDGRFSVLVATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGR 471
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
A K+G AI M+T ++ +RS+ R+ G KF ++PP +V+ SSAEQ ++ V E
Sbjct: 472 ANKKGAAIAMYTPREKSRIRSIVRETGVKFRVINPPTAAEVMTSSAEQASIEIDLVDDEL 531
Query: 241 VEFFTPTAQRL---IEEKGTDALAAA------LAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ +FTPTA+++ ++ G D + + LA LSG + PP RS++ + G T+
Sbjct: 532 LPYFTPTAEKILAAVKNGGADGRSESEVLAAALAALSGHTEPPPPRSMLTGDVGQTTM-- 589
Query: 292 TRDSAFSRGFMS-ARSVMGFLSDVYPTAADEIGKIHIIADDR-VCID 336
+RG M R ++ +S+V AAD +G+I I+AD+ +C D
Sbjct: 590 -----IARGNMILPRDLLRAMSEVSRAAADGVGRIRILADNSGLCFD 631
>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 151/210 (71%), Positives = 174/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP RQSM+FSATMPSW++KL++KYL NPL IDLVG+ D+KLAE
Sbjct: 273 MLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAE 332
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ EALHGD
Sbjct: 333 GISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGD 392
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL+GFR G F VLVATDVAARGLDIPNVDLIIHYELPN E FVHRSGRTGR
Sbjct: 393 ISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGR 452
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++ Q RTVR +ERD+GCKF
Sbjct: 453 AGKKGTAILIYAEQQARTVRFIERDIGCKF 482
>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
Length = 666
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/210 (71%), Positives = 174/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP RQSM+FSATMPSW++KL++KYL NPL IDLVG+ D+KLAE
Sbjct: 273 MLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAE 332
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ EALHGD
Sbjct: 333 GISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGD 392
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL+GFR G F VLVATDVAARGLDIPNVDLIIHYELPN E FVHRSGRTGR
Sbjct: 393 ISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGR 452
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++ Q RTVR +ERD+GCKF
Sbjct: 453 AGKKGTAILIYAEQQARTVRFIERDIGCKF 482
>gi|225446899|ref|XP_002284103.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Vitis
vinifera]
Length = 666
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 151/210 (71%), Positives = 174/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP RQSM+FSATMPSW++KL++KYL NPL IDLVG+ D+KLAE
Sbjct: 273 MLAVGFEEDVEMILEKLPQNRQSMMFSATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAE 332
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +I+ LIT +AKGGK IVFTQTKRDAD ++ A+ EALHGD
Sbjct: 333 GISLYSIASEMYEKASIVGPLITEHAKGGKCIVFTQTKRDADRLAYAMARNFRCEALHGD 392
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL+GFR G F VLVATDVAARGLDIPNVDLIIHYELPN E FVHRSGRTGR
Sbjct: 393 ISQSQRERTLSGFRDGHFNVLVATDVAARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGR 452
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++ Q RTVR +ERD+GCKF
Sbjct: 453 AGKKGTAILIYAEQQARTVRFIERDIGCKF 482
>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
Length = 803
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 172/347 (49%), Positives = 235/347 (67%), Gaps = 18/347 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE I++ +P +RQ+ LFSATMPSWVK+L+RKYL +NIDLVG+ +K+A+
Sbjct: 301 MLAVGFEEDVERIMQEIPEERQTFLFSATMPSWVKQLTRKYLKEHVNIDLVGDSKQKVAD 360
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
I + + + + S+ IL+DL+TVY KG K I FTQTKR+ADEV+ AL +A+E LHGD
Sbjct: 361 TIDILSCACSHQSRTMILADLVTVYGKGAKAICFTQTKREADEVTAALGRRMATEVLHGD 420
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL FR +F+VLVATDVAARGLDI +VDL++H+ELPND E+FVHR GRTGR
Sbjct: 421 IAQAQRERTLKRFRDNRFSVLVATDVAARGLDITDVDLVVHFELPNDTESFVHRCGRTGR 480
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
A K GTAI MFT + +R++ R+ G F+ ++ P +V+ SSA Q ++ V E
Sbjct: 481 ANKRGTAIAMFTPRENYRLRTIVRETGVTFKSINAPTPAEVMTSSAVQAKHEMSLVDDEL 540
Query: 241 VEFFTPTAQRLIEE---KGTDALAAA------LAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ +FTPTA+ ++EE G + + A LA LSG + PP RSL+ + G T+
Sbjct: 541 LPYFTPTAEAILEEVRAAGGNGRSEAETLAAALAALSGHTEPPPPRSLLTSDVGLTTM-- 598
Query: 292 TRDSAFSRGFM-SARSVMGFLSDVYPTAADEIGKIHIIADDR-VCID 336
++G M R ++ LS V AAD +G+I I+AD+ +C D
Sbjct: 599 -----VAKGHMLLPRDLLRALSMVNRAAADGVGRIRILADNSGLCFD 640
>gi|384244948|gb|EIE18444.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 674
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 233/343 (67%), Gaps = 13/343 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN-QDEKLA 59
ML++GF EDVE+IL+++P +RQ+MLFSATMPSWVK ++RK+L NP +DLVG+ Q K+
Sbjct: 209 MLSMGFSEDVEIILDSVPAERQTMLFSATMPSWVKNITRKHLKNPALVDLVGDAQSGKMP 268
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
+ IK A+ T ++R+IL DLITV+A GGK IVFTQTKR+ADEV+ +L+ + EALHG
Sbjct: 269 DAIKTMAVHVTQEARRSILVDLITVHALGGKCIVFTQTKREADEVAASLSLVHPCEALHG 328
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DISQ QRE+ L FR GKFT LVATDVAARGLDIP+VDL++HY+LP D E F+HRSGRTG
Sbjct: 329 DISQAQREQVLKNFRNGKFTALVATDVAARGLDIPDVDLVVHYDLPRDTEAFLHRSGRTG 388
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCK-FEFVSPPVVEDVLESSAEQVVATLNGVHP 238
RAGK G+ I + R R + ++ K E++S P V+E+SA+QV+ L+ V
Sbjct: 389 RAGKTGSTIAVVLPRDRSYFRRMCAEIKLKDVEYISSPSPSAVMEASAKQVLRRLDNVDE 448
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296
+ +EFF P A +L+ E+G DA+ ALA LSG P RSLI E G VT+++ S
Sbjct: 449 KVIEFFAPAA-KLVLERGDKHDAMCRALAALSGLIEVPKPRSLITQEVGLVTMRVM--SR 505
Query: 297 FSRGFMSARSVMGFLSDVYPTAADEI---GKIHIIADDRVCID 336
R + VM + +V AD + G++ ++ DDR ++
Sbjct: 506 PGRITLPGH-VMTIVRNVI--GADGVTGLGRVRLLQDDRAGME 545
>gi|356499321|ref|XP_003518490.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 595
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 145/210 (69%), Positives = 174/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+EDVE ILE LPPKRQ+++FSATMPSW+K++SR YL+NPL IDLVG+ D+KLA+
Sbjct: 246 MLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLAD 305
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I+T K IL+ LIT +AKGGK IVFTQTKRDAD +S A+ + EALHGD
Sbjct: 306 GISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYAMARSVKCEALHGD 365
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRE+TL GFR G F VLVATDVA+RGLDIPNVDL+IHY+LPN+ E FVHRSGRTGR
Sbjct: 366 ISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGR 425
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++T Q R V+ +ERDVG +F
Sbjct: 426 AGKKGTAILVYTEDQSRAVKLIERDVGSRF 455
>gi|357494025|ref|XP_003617301.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355518636|gb|AET00260.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 802
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 145/210 (69%), Positives = 173/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+EDVE ILE LP +RQ+++FSATMP+W+K+L+R YL NPL IDLVG+ D+KLA+
Sbjct: 238 MLQVGFQEDVEKILERLPAERQTLMFSATMPTWIKQLTRNYLKNPLTIDLVGDSDQKLAD 297
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I + A K I+ LI +AKGGK IVFTQTKRDAD +S ++ I EALHGD
Sbjct: 298 GISLYSILSDAYVKAGIIVPLIKEHAKGGKCIVFTQTKRDADRISHGMSKSIPCEALHGD 357
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F VLVATDVA+RGLDIPNVDL+IHYELPN+ E FVHRSGRTGR
Sbjct: 358 ISQIQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGR 417
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++T Q RT+R++ERDVGCKF
Sbjct: 418 AGKKGTAILVYTQDQSRTLRTIERDVGCKF 447
>gi|356554094|ref|XP_003545384.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 610
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/210 (68%), Positives = 173/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+EDVE ILE LPPKRQ+++FSATMPSW+K++SR YL+NPL IDLVG+ D+KLA+
Sbjct: 241 MLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQISRNYLNNPLTIDLVGDSDQKLAD 300
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I+T K IL+ LIT +AKGGK IVFTQTKRDAD +S + + EALHGD
Sbjct: 301 GISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMARSVKCEALHGD 360
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRE+TL GFR G F VLVATDVA+RGLDIPNVDL+IHY+LPN+ E FVHRSGRTGR
Sbjct: 361 ISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGR 420
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++T Q R V+ +ERDVG +F
Sbjct: 421 AGKKGTAILVYTEDQSRAVKLIERDVGSRF 450
>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
Length = 618
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 137/210 (65%), Positives = 173/210 (82%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF++DVE ILE +PP+RQ+++FSATMP+W++KL++KYL++P+ +DLVG D+KLAE
Sbjct: 255 MLSVGFDQDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L ++S+ K +L +LI +AKGGK IVFTQTKRDAD +S +++ EALHGD
Sbjct: 315 GISLLSVSSENRQKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHSMSRSFQCEALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G+F +L+ATDVAARGLDIPNVDL+IHYELPN E FVHRSGRTGR
Sbjct: 375 ISQSQRERTLGGFRDGRFNILIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 435 AGKKGTAIVMYNYEQSRAVRVIERDVGCKF 464
>gi|449463625|ref|XP_004149532.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 593
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 175/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+EDVE ILE LP KRQSM+FSATMPSW+ KLSR YL+NPL IDLVG+ D+KLA+
Sbjct: 265 MLQVGFQEDVEKILERLPQKRQSMMFSATMPSWILKLSRNYLNNPLTIDLVGDSDQKLAD 324
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L+++ + K +I+ LIT + KGGK I+FTQTKRDAD ++ A+ + EALHGD
Sbjct: 325 GISLFSVVSETYGKASIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGD 384
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL+GFR G+F VLVATDVAARGLDIPNVDL+IH+ELPN+ E FVHRSGRTGR
Sbjct: 385 ISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGR 444
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+ IL+++ Q R +R +ER+VGC+F + VE
Sbjct: 445 AGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRITVE 483
>gi|143456572|sp|Q0D8N0.2|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
Length = 602
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/225 (64%), Positives = 182/225 (80%), Gaps = 2/225 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+ENLP RQSMLFSATMPSW++K++ KYL +P+ IDLVG++D+KL E
Sbjct: 241 MLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPE 300
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ A+ A +ALHGD
Sbjct: 301 GISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGD 360
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT R
Sbjct: 361 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTAR 420
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
AGK+G+AIL++T+ Q R VR +E+D+GCKF + P +E E+S
Sbjct: 421 AGKKGSAILIYTNDQARAVRIIEQDIGCKFTEL--PKIEVADEAS 463
>gi|449505807|ref|XP_004162573.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Cucumis
sativus]
Length = 611
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 175/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+EDVE ILE LP KRQSM+FSATMPSW+ KLSR YL+NPL IDLVG+ D+KLA+
Sbjct: 265 MLQVGFQEDVEKILERLPQKRQSMMFSATMPSWILKLSRNYLNNPLTIDLVGDSDQKLAD 324
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L+++ + K +I+ LIT + KGGK I+FTQTKRDAD ++ A+ + EALHGD
Sbjct: 325 GISLFSVVSETYGKASIIGPLITEHGKGGKCIIFTQTKRDADRLAYAMGRNLRCEALHGD 384
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL+GFR G+F VLVATDVAARGLDIPNVDL+IH+ELPN+ E FVHRSGRTGR
Sbjct: 385 ISQSQRERTLSGFRDGRFNVLVATDVAARGLDIPNVDLVIHFELPNNTEIFVHRSGRTGR 444
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+ IL+++ Q R +R +ER+VGC+F + VE
Sbjct: 445 AGKKGSVILIYSQDQTRAIRMIEREVGCRFNELPRITVE 483
>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 142/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 259 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 318
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 319 GITTYSILADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 378
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 379 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 438
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 439 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 477
>gi|22331253|ref|NP_188872.2| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
gi|75335516|sp|Q9LUW5.1|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
Length = 616
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+
Sbjct: 262 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 322 GITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 442 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
>gi|414868924|tpg|DAA47481.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 1 [Zea mays]
gi|414868925|tpg|DAA47482.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
isoform 2 [Zea mays]
Length = 611
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 138/210 (65%), Positives = 171/210 (81%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+ DVE ILE +PP+RQ+++FSATMP+W++KL++KYL+NP+ +DLVG D+KLAE
Sbjct: 251 MLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAE 310
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L A+S+ K +L +LI +AKGGK IVFTQTKRDAD +S ++ EALHGD
Sbjct: 311 GISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGD 370
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G+F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 371 ISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 430
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 431 AGKKGTAIVMYNYDQSRAVRVIERDVGCKF 460
>gi|308080376|ref|NP_001183357.1| uncharacterized protein LOC100501766 [Zea mays]
gi|223949963|gb|ACN29065.1| unknown [Zea mays]
gi|238010976|gb|ACR36523.1| unknown [Zea mays]
Length = 483
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 138/210 (65%), Positives = 171/210 (81%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+ DVE ILE +PP+RQ+++FSATMP+W++KL++KYL+NP+ +DLVG D+KLAE
Sbjct: 123 MLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGEDDQKLAE 182
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L A+S+ K +L +LI +AKGGK IVFTQTKRDAD +S ++ EALHGD
Sbjct: 183 GISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGD 242
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G+F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 243 ISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 302
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 303 AGKKGTAIVMYNYDQSRAVRVIERDVGCKF 332
>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
Length = 630
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 134/210 (63%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE IL+ +PPKRQ+++FSATMP+W+++L++KYL NP+ IDLVG D+KLAE
Sbjct: 255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S + +ALHGD
Sbjct: 315 GISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 375 ITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 435 AGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
>gi|356569971|ref|XP_003553167.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 643
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 140/210 (66%), Positives = 168/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+E VE ILE L P RQ+++FSATMPSW+K ++R YL+NPL IDLVG+ D+KLA+
Sbjct: 245 MLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLAD 304
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I + + +K IL+ LIT +A GGK IVFTQTKRDAD +S + + EALHGD
Sbjct: 305 GISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGD 364
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR F VLVATDVA+RGLDIPNVDL+IHY+LPN E FVHRSGRTGR
Sbjct: 365 ISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGR 424
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G+AIL FT Q R V+++ERDVGCKF
Sbjct: 425 AGKKGSAILFFTQDQFRAVQTIERDVGCKF 454
>gi|122227760|sp|Q0ILZ4.1|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
Length = 628
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 134/210 (63%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE IL+ +PPKRQ+++FSATMP+W+++L++KYL NP+ IDLVG D+KLAE
Sbjct: 255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S + +ALHGD
Sbjct: 315 GISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 375 ITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 435 AGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
Length = 676
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 134/210 (63%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE IL+ +PPKRQ+++FSATMP+W+++L++KYL NP+ IDLVG D+KLAE
Sbjct: 303 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAE 362
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S + +ALHGD
Sbjct: 363 GISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGD 422
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 423 ITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 482
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 483 AGKKGKAIVMHSYQQSRAIRMVENDVGCKF 512
>gi|356524181|ref|XP_003530710.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like [Glycine
max]
Length = 605
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/210 (65%), Positives = 169/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF+E VE ILE L P RQ+++FSATMPSW+K ++R YL+NPL IDLVG+ D+KLA+
Sbjct: 246 MLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLAD 305
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I + + +K IL+ LIT +A GGK IVFTQTKRDAD +S + + EALHGD
Sbjct: 306 GISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGD 365
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRE+TL GFR F VLVATDVA+RGLDIPNVDL+IHY+LPN E FVHRSGRTGR
Sbjct: 366 ISQTQREKTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGR 425
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G+AIL++T Q R V++++RDVGCKF
Sbjct: 426 AGKKGSAILVYTQGQSRAVQTIQRDVGCKF 455
>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
Length = 602
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 178/224 (79%), Gaps = 1/224 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+E LP RQSMLFSATMPSW++K+S KYL++P+ IDLVG+ D+KL E
Sbjct: 243 MLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPE 302
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K++IL LI +A GGK IVFTQTKRDAD ++ + +ALHGD
Sbjct: 303 GISLYSIASDNFGKQSILGPLIKEHANGGKCIVFTQTKRDADRLAYVMGRSYPCQALHGD 362
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E FVHRSGRT R
Sbjct: 363 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTAR 422
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVEDVLE 223
AGK+G+AIL++T Q R VR +E+D+GC+F E PV ++ +
Sbjct: 423 AGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDEAAD 466
>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
Length = 445
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/219 (63%), Positives = 172/219 (78%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLA GF EDVE I+E LP +RQ+M+FSATMPSWVK L R+++ +PL +DLVG+ DEKLAE
Sbjct: 166 MLATGFAEDVEKIMERLPKQRQTMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAE 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLY+ + +K +L +L+ Y KGGK IVF +TKRD V+ A++ + EALHGD
Sbjct: 226 GIKLYSCEASDYNKGPLLKELVNSYGKGGKVIVFAKTKRDTHNVAQAMSRSVPCEALHGD 285
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I Q QRERTL+GFR G+F+VLVATDVAARGLDIPNVDL+IHYE+P D ETFVHRSGRTGR
Sbjct: 286 IPQFQRERTLSGFRDGRFSVLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGR 345
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G AILM T +Q R ++E DVGC+FE ++ P V+
Sbjct: 346 AGKKGVAILMHTYAQGRVRDTIEHDVGCRFEALNVPNVD 384
>gi|3775995|emb|CAA09200.1| RNA helicase [Arabidopsis thaliana]
Length = 363
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 172/219 (78%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 27 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 86
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 87 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 146
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 147 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 206
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 207 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 245
>gi|357111676|ref|XP_003557638.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 53-like
[Brachypodium distachyon]
Length = 604
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/210 (64%), Positives = 171/210 (81%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+E LP RQSMLFSATMPSW++KLS +YL +P+ IDLVG D+KL E
Sbjct: 241 MLAVGFDEDVEVIMEKLPQNRQSMLFSATMPSWIRKLSNQYLKDPVIIDLVGESDQKLPE 300
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ ++ A +ALHGD
Sbjct: 301 GISLYSIASENYGKSSILGTLIKEHANGGKCIVFTQTKREADRLAYSMGRSYACQALHGD 360
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q+QRERTL+GFR+G+F +LVATDVAARGLDIPNVDL++HYE+PN E FVHRSGRT R
Sbjct: 361 ITQNQRERTLSGFREGRFNILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTAR 420
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AILM+T Q R VR +E+D+GC+F
Sbjct: 421 AGKKGIAILMYTYEQSRAVRVIEQDIGCRF 450
>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
lyrata]
Length = 615
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 175/231 (75%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 278 MLQVGFAEDVEIILQKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 337
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 338 GITMYSIAADSYGRASIIGPLVNEHGKGGKCIVFTQTKRDADRLAFGLAKSFKCEALHGD 397
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 398 ISQAQRERTLAGFRDGNFNILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 457
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
AGK+G+AIL+ Q R V+ +E++VG +F + VE S E V A
Sbjct: 458 AGKKGSAILIHGQEQSRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGA 508
>gi|15228722|ref|NP_188870.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
gi|75335517|sp|Q9LUW6.1|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
Length = 610
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 172/219 (78%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 274 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 333
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 334 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 393
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 394 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 492
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 134/211 (63%), Positives = 171/211 (81%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE+IL +PPKRQ+++FSATMP W++KL +KYL +P+ +DLVG D+KLAE
Sbjct: 262 MLSVGFDEDVEIILNKVPPKRQTLMFSATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAE 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L +I+T +K +L+ LI +AKGGK IVFTQTKRDAD +S + + +ALHGD
Sbjct: 322 GISLLSIATENHAKPAVLAQLIQDHAKGGKCIVFTQTKRDADRLSYTMGRTVQCQALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G+F+ L+ATDVAARGLDIPNVDL+IHYELPN+ E FVHRSGRTGR
Sbjct: 382 ITQGQRERTLQGFREGRFSTLIATDVAARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
AGK+G AI+M+ +Q R VR +E DVG KF+
Sbjct: 442 AGKKGIAIVMYGYNQSRAVRGIENDVGGKFQ 472
>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
Length = 551
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 139/210 (66%), Positives = 168/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF +D+E IL ++P KR SM FSATMPSW+++L RKYL +PL IDLVG+ D+KLAE
Sbjct: 200 MLGVGFVDDIETILSSVPQKRHSMCFSATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAE 259
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +IL LIT +AKGGK IVFT+TKRDAD ++ A+ EALHGD
Sbjct: 260 GITLYSIASDLYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKTYKCEALHGD 319
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ RERTL+GFR+G F +LVATDVAARGLD+PNVDLIIHY LP ETFVHRSGRTGR
Sbjct: 320 ISQSVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGR 379
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++T + R VR +ERD GCKF
Sbjct: 380 AGKKGTAILIYTQDESRQVRIIERDTGCKF 409
>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 135/210 (64%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+E VE+I+E LP RQSMLFSATMPSW++KL+ +YL +P+ IDLVG+ ++KL E
Sbjct: 244 MLAVGFDEAVEVIMEKLPQNRQSMLFSATMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPE 303
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I + K +IL LI +A GGK IVFTQTKR+AD ++ A+ A +ALHGD
Sbjct: 304 GISLYSIVSENYGKSSILGPLIKEHADGGKCIVFTQTKREADRLAYAMGRSYACQALHGD 363
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E FVHRSGRT R
Sbjct: 364 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNSSELFVHRSGRTAR 423
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AILM+T Q RTV+ +E+D+GC+F
Sbjct: 424 AGKKGIAILMYTYEQSRTVKGIEQDIGCRF 453
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 219/358 (61%), Gaps = 30/358 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE ILE++P RQ+ LFSATMP WVKKL +K+L + +NIDLVG K+ +
Sbjct: 393 MLAVGFEEDVETILEDVPKNRQTFLFSATMPHWVKKLQQKFLVDQVNIDLVGEDTGKINK 452
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
I L + S SK +L DL+TV+AKG KTIVFTQTKRDADEV+ +L +++E LHGD
Sbjct: 453 DIDLMSCSVAFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEVTASLGKRVSTEVLHGD 512
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL FRQ KF+VLVATDVAARGLD+ NVDL++HYELPN+ E+FVHR GRTGR
Sbjct: 513 IAQAQRERTLQRFRQDKFSVLVATDVAARGLDVDNVDLVVHYELPNETESFVHRCGRTGR 572
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+GTAI + T + +R ++R G ++PP +V+ +SA ++ V +
Sbjct: 573 AGKKGTAIALHTDREFYRLRDIKRFTGADIREINPPSSSEVMAASAATAEHRIHAVDEDV 632
Query: 241 VEFFTP-----------------------------TAQRLIEEKGTDALAAALAQLSGFS 271
+EFF P T+Q IE + + LA ALA LSG +
Sbjct: 633 LEFFLPAAKDMIRNVQQKTTNDDEETETETEDETLTSQEEIERRAQELLARALAALSGHT 692
Query: 272 RPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIA 329
P +SL+ G VT+ + D SAR ++ L D + +GKI A
Sbjct: 693 EAPPPKSLLTGSPGQVTM-IVEDVNGDLPAFSARDLLATLGDKDRRLSSGVGKITFFA 749
>gi|414877991|tpg|DAA55122.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 472
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 132/210 (62%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF++DVE ILE +PP+ Q+++FSATMP+W++KL++K+L++P+ +DLVG D+KLAE
Sbjct: 123 MLSVGFDKDVETILERVPPQHQTLMFSATMPTWIRKLTQKFLNSPVTVDLVGEDDQKLAE 182
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L ++S+ K +L LI +AKGGK IVFTQTKRDAD +S ++ EALHGD
Sbjct: 183 GISLLSVSSENREKPAVLGKLIKEHAKGGKCIVFTQTKRDADRLSHNMSRSFQCEALHGD 242
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ +RERTL GFR G+F +L+ATDVA+RGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 243 ISQSERERTLAGFRDGRFNILIATDVASRGLDIPNVDLVIHFELPNSSEIFVHRSGRTGR 302
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAI+M+ Q R VR +ERDVGCKF
Sbjct: 303 AGKKGTAIVMYNYEQSRAVRVIERDVGCKF 332
>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
Length = 683
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 223/342 (65%), Gaps = 7/342 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLA 59
ML VGFEEDVE IL + P RQ+ LFSATMP WVK++++K+L + +DLVG+ +K+A
Sbjct: 185 MLNVGFEEDVEAILHDCPAGRQTFLFSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVA 244
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
+ I L + + TS+ +I+ DL+TVYAK K I FTQTKR ADE++ AL ++ E LHG
Sbjct: 245 DTIDLMTCAVSQTSRTSIVMDLVTVYAKDKKCICFTQTKRAADELTAALGKRVSCEVLHG 304
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERTL FR +FTVL+ATDVAARGLDI +VDL+IHYELPND E+FVHR GRTG
Sbjct: 305 DIAQAQRERTLQRFRDNRFTVLIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTG 364
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG++G AI M+T + +R ++++ GC F + P +V+++ A L+ V E
Sbjct: 365 RAGQQGAAIAMYTDRESYMIRRIQKETGCDFRAIDIPSSTEVMDACAVTASNALSKVDSE 424
Query: 240 SVEFFTPTAQRLIEEKG----TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295
+ FF PTA++L+ E T LAAALA +SG + P RSL+ T + DS
Sbjct: 425 LLPFFAPTAKKLLPEDAGEDITQILAAALAAISGQTEAPPPRSLLTGAPNSCTYMVV-DS 483
Query: 296 AFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIAD-DRVCID 336
A S + A ++ L+++ AD GKI +A+ + +C D
Sbjct: 484 ADSEPAIRAGDLLRALTEIDRKLADGCGKIRFLANKNGLCFD 525
>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 138/210 (65%), Positives = 166/210 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF +D+E IL LP KR SM FSATMPSW+K+L RKYL +PL IDLVG+ D KLA+
Sbjct: 225 MLGVGFVDDIETILSRLPKKRHSMCFSATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLAD 284
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +IL LIT +AKGGK IVFT+TKRDAD ++ A+ EALHGD
Sbjct: 285 GITLYSIASDMYAKASILGPLITEHAKGGKCIVFTETKRDADRLAYAMAKNHKCEALHGD 344
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+ RERTL+GFR+G F +LVATDVAARGLD+PNVDLIIHY LP ETFVHRSGRTGR
Sbjct: 345 ISQNVRERTLSGFREGHFNILVATDVAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGR 404
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+GTAIL++T R V+ +ERD GC+F
Sbjct: 405 AGKKGTAILIYTQDDARQVKLIERDTGCRF 434
>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787, partial [Chlorella
variabilis]
Length = 689
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 223/343 (65%), Gaps = 17/343 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG----NQDE 56
ML VGFE+DVE ILEN+P +RQ+MLFSAT+P WVKKL ++YL+NP NIDLVG QD
Sbjct: 306 MLNVGFEKDVETILENVPQERQTMLFSATLPRWVKKLVKQYLNNPENIDLVGEGNTGQDP 365
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 116
+ A++ A ++R++L DL+TVY +GGK IVFTQTKR+ADEV+ ++ + A
Sbjct: 366 D-----SITALAVPADARRSVLVDLLTVYGEGGKAIVFTQTKREADEVAASVGGHLPCGA 420
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ +RE+ L FR K VLVATDVAARGLDIP+VD+++HYELP DPE+F+HRSG
Sbjct: 421 LHGDMSQREREKVLASFRANKLMVLVATDVAARGLDIPDVDVVVHYELPQDPESFLHRSG 480
Query: 177 RTGRAGKEGTAILMFTSSQ----RRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
RTGRAGK GTAI MF + +R +R E G K ++ P V+E++A+QV+
Sbjct: 481 RTGRAGKSGTAIAMFQPKEIGYFKRILRETEVQ-GVK--LITAPSPTQVIEAAAKQVMYR 537
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L+GV E ++FTP A+ L+ + AL AALA LSG P RSL+ E+G TLQ+
Sbjct: 538 LDGVDAEVRKYFTPVAKMLLSSRDPQEALEAALAALSGIQEVPEPRSLLTMEEGIQTLQM 597
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVC 334
++G L + A +G+I ++ ++ C
Sbjct: 598 MSKPGRITRPAHVSGIVGKLLEGTAFNAGAVGRIRMLEEEGQC 640
>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
Length = 613
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 175/224 (78%), Gaps = 1/224 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+E LP RQSMLFSATMPSW++K+S KYL +P+ IDLVG+ D+KL E
Sbjct: 252 MLAVGFDEDVEVIMEQLPQNRQSMLFSATMPSWIRKISNKYLKDPVIIDLVGDSDQKLPE 311
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +I+ LI +A GK IVFTQTKR+AD ++ + +ALHGD
Sbjct: 312 GISLYSIASDNFGKPSIIGPLIKEHANVGKCIVFTQTKREADRLAYVMGRSYQCQALHGD 371
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL++HYE+PN E FVHRSGRT R
Sbjct: 372 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVVHYEIPNTSELFVHRSGRTAR 431
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF-EFVSPPVVEDVLE 223
AGK+G+AIL++T Q R VR +E+D+GC+F E PV ++ +
Sbjct: 432 AGKKGSAILIYTYEQTRAVRVIEQDIGCRFTELPKMPVSDEAAD 475
>gi|222626093|gb|EEE60225.1| hypothetical protein OsJ_13207 [Oryza sativa Japonica Group]
Length = 697
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/175 (76%), Positives = 153/175 (87%)
Query: 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218
IIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +
Sbjct: 361 IIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAI 420
Query: 219 EDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRS 278
EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRS
Sbjct: 421 EDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRS 480
Query: 279 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
LI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+GKI + AD++V
Sbjct: 481 LISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKV 535
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 77/84 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 278 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 337
Query: 61 GIKLYAISTTATSKRTILSDLITV 84
GIKLYAI T+TSKRT+LSDLIT+
Sbjct: 338 GIKLYAIPLTSTSKRTVLSDLITI 361
>gi|357156628|ref|XP_003577522.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Brachypodium
distachyon]
Length = 613
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/211 (63%), Positives = 169/211 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+E VE IL+++P KRQ+++FSATMP+W++KL++KYL NP +DLVG D+KLAE
Sbjct: 256 MLSVGFDEAVEEILQSVPVKRQTLMFSATMPTWIRKLTQKYLKNPATVDLVGEDDQKLAE 315
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI L +I+T +K +L+ LI + KGGK IVFTQTKRDAD ++ + I + LHGD
Sbjct: 316 GISLLSIATENHAKPAVLAQLIQDHGKGGKCIVFTQTKRDADRLAFTMGRSIQCQPLHGD 375
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G+F+ L+ATDVAARGLDIPNVDL+IHYELPN E FVHRSGRTGR
Sbjct: 376 ISQVQRERTLAGFRDGRFSTLIATDVAARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGR 435
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
AGK+GTAI+M + Q R+VR +E+DVG KF+
Sbjct: 436 AGKKGTAIVMHSYQQSRSVRGIEQDVGGKFK 466
>gi|428178088|gb|EKX46965.1| hypothetical protein GUITHDRAFT_159596 [Guillardia theta CCMP2712]
Length = 676
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/345 (43%), Positives = 216/345 (62%), Gaps = 10/345 (2%)
Query: 1 MLAVGFEEDVELILENLPP---KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEK 57
ML GF +DVE ++ +P + Q++LFSAT+P WV+KL+R L NP +DLVG K
Sbjct: 195 MLNRGFADDVETLMGGMPQGADRPQTLLFSATVPDWVRKLARTSLVNPHEVDLVGESKLK 254
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEA 116
+AEG+ A+++ A + T+L+DLIT+Y K IVF TKRDAD++ L II +EA
Sbjct: 255 VAEGVSHVAVASAARQRSTLLADLITIY-KTQHAIVFVNTKRDADDLVAELGLIIKGTEA 313
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI Q+ RE+ LNGFR G+ VL+ATDVAARGLDI ++DL++H+ +P D E F+HR+G
Sbjct: 314 LHGDIPQNVREKILNGFRTGRIPVLIATDVAARGLDIDHIDLVVHFGVPKDLEMFIHRAG 373
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG+ GT++++F ++ + +E+D G KFE P ++++E+SA + L V
Sbjct: 374 RTGRAGRTGTSLVLFDKAEAFQLTRIEKDAGIKFEKRGVPQPDEIMEASAIRAADNLKTV 433
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296
+PE FF AQ L + G +LA ALA +SG+ PPS RSL+ E T+ L+ +
Sbjct: 434 NPELEGFFLGKAQELYAQDGIASLAKALAWMSGYKAPPSKRSLLTGEDELRTVLLSPAAQ 493
Query: 297 FSRGFMSARSVMGFLSDVYPTAA-----DEIGKIHIIADDRVCID 336
++G + R VM +S+V + IGKI D ID
Sbjct: 494 DAQGGLQVRDVMRIVSNVLSQSTLSPFDTRIGKIVRCQDGSAVID 538
>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase [Deinococcus maricopensis DSM 21211]
gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
21211]
Length = 604
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 193/293 (65%), Gaps = 3/293 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E IL P RQ+MLFSAT+P+ V ++ KYL +PL +DLVG + A+
Sbjct: 155 MLSVGFADAIESILSATPETRQTMLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQ 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + T R +L+D +T+Y + IVFT+TKR+ DE+++ L + +EALHG
Sbjct: 215 TVQHLKVKVGRTRTR-VLADFLTIY-NPERAIVFTRTKREVDELAMELIHRGLEAEALHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR G+ VLVATDVAARGLDIP +DL++ Y LP DPE++VHRSGRTG
Sbjct: 273 DLAQSQRERALGSFRAGRVRVLVATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI+M+ + R +R+LE G KFE S P ++V E+SA + V E
Sbjct: 333 RAGRTGTAIVMYGEREGRELRNLEYQTGVKFEERSIPTPKEVREASARAAADNVKKVDAE 392
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ F A+RL E G DALA ALA++SG ++P + SL++ E+G T+ L
Sbjct: 393 MAQPFMAEAERLFSELGLDALARALAKISGVTQPAVNASLLSGEEGMTTIILN 445
>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
Length = 560
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 195/292 (66%), Gaps = 3/292 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E IL+ P +RQ+MLFSAT+ + +K+LSR YL +PL +D+VG + A+
Sbjct: 36 MLSVGFADAIETILQKTPEERQTMLFSATLNNDIKRLSRNYLKDPLIVDMVGEGKSQAAQ 95
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + S+ +L+DL+TVY K IVFT+TKR+ADE++ L + SEALHG
Sbjct: 96 TVEHLKVKV-GRSRTRVLADLLTVY-NPEKAIVFTRTKREADELANELIHRGLESEALHG 153
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTG
Sbjct: 154 DLAQTQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTG 213
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI+M+ + R V LER G +F+ P +V ++SA + V PE
Sbjct: 214 RAGRTGTAIIMYGDRENREVMGLERITGVRFKERPLPTPSEVAQASARASSEMVRRVDPE 273
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ + F A++L E G +ALA ALA++SG + P + SL++ E+G TL L
Sbjct: 274 AAQGFQAEAEQLFSELGLEALARALAKISGVTEPAKAASLLSGEEGLTTLIL 325
>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
MRP]
Length = 612
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 194/292 (66%), Gaps = 3/292 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E IL+ P RQ++LFSAT+ +++LS KYL++PL +D+VG + A+
Sbjct: 155 MLSVGFADAIETILKTTPEGRQTLLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQ 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + S+ +L+DL+TVY K IVFT+TKR+ DE++L L +EALHG
Sbjct: 215 TVEHLKVRV-GRSRTRVLADLLTVYNPE-KAIVFTRTKRETDELALELIHRGFEAEALHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q+QRER L FR G+ ++LVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTG
Sbjct: 273 DLAQNQRERALGSFRSGRTSILVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI+M+ ++R + LER G +F P +V E+SA L V E
Sbjct: 333 RAGRAGTAIIMYGDREQRDINGLERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAE 392
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ L+EE G +ALA ALA++SG + P + SL++ E+G TL L
Sbjct: 393 AAAGFMEQAEALLEEMGAEALARALAKISGVTEPQAPASLLSGEEGQTTLIL 444
>gi|429220700|ref|YP_007182344.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131563|gb|AFZ68578.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 570
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 195/292 (66%), Gaps = 3/292 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E IL + P RQ+MLFSAT+PS V++L+R+Y +P+ +DLVG + + ++
Sbjct: 155 MLSVGFADAIEQILRSAPKDRQTMLFSATLPSGVERLARQYQRDPVLVDLVGERASQASQ 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ AI R +L+DL+TVY + IVFT+TKR+ADE+SL L I +EALHG
Sbjct: 215 TVTHLAIKVGRVRTR-VLADLLTVY-NPERAIVFTRTKREADELSLELIHRGIEAEALHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y +PND E +VHRSGRTG
Sbjct: 273 DLAQSQRERALGAFRAGRVRVLVATDVAARGLDIPEVDLVVQYHMPNDTEAYVHRSGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EGTAI+++ + R + +LER G +F + P ++V E+SA + + +
Sbjct: 333 RAGREGTAIVLYGDREGRELSNLERATGVRFTPRAVPTAKEVREASARTAADAVRHIEND 392
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
F A++L E G DALA ALA+++G + P +S SL++ E+ T+ L
Sbjct: 393 LGASFKEEAEKLFAELGVDALARALAKIAGVTAPATSASLLSGEENMTTVIL 444
>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase [Deinococcus geothermalis DSM 11300]
gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
11300]
Length = 591
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 189/292 (64%), Gaps = 3/292 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E IL+ P RQ+MLFSAT+ + +L+RKYL P+ +DLVG + A+
Sbjct: 160 MLSVGFADAIETILQQTPAARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQ 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + T R +L+DL+TVY K IVFT+TKR+ADE++ L I SEALHG
Sbjct: 220 SVEHLKVKVGRTRTR-VLADLLTVYNPE-KAIVFTRTKREADELANELIHRGIESEALHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTG
Sbjct: 278 DLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI+M+ + R +R+LE G +F+ P ++V +SA + V
Sbjct: 338 RAGRTGTAIVMYGDRENRELRNLEYRTGVQFKERPLPTPKEVQAASARASADLVRKVDSG 397
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
F A+RL E G +ALA ALA++SG + P + SL++ E+G TL L
Sbjct: 398 VAATFQAEAERLFSELGLEALARALAKISGVTEPVQAASLLSGEEGLTTLIL 449
>gi|386857046|ref|YP_006261223.1| DEAD/DEAH box helicase [Deinococcus gobiensis I-0]
gi|380000575|gb|AFD25765.1| DEAD/DEAH box helicase-like protein [Deinococcus gobiensis I-0]
Length = 599
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E ILE P RQ+MLFSAT+ + +LSRKYL +PL +D+VG + A+
Sbjct: 155 MLSVGFADAIETILEKTPEGRQTMLFSATLNGDINRLSRKYLRDPLTVDMVGEGKSQAAQ 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + S+ +L+DL+TVY K IVFT+TKR+ADE++ L I SEALHG
Sbjct: 215 TVEHLKVRV-GRSRTRVLADLLTVYNPE-KAIVFTRTKREADELANELIHRGIESEALHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTG
Sbjct: 273 DLAQTQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI+M+ R + LER G +F P ++V +SA + V
Sbjct: 333 RAGRTGTAIIMYGDRDGREMSGLERITGVRFTERPLPTPKEVASASARSSADLVRRVDSG 392
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ + F A+RL E G +AL ALA++SG + P + SL++ E+G TL L
Sbjct: 393 AAQGFQEEAERLFSELGLEALTRALAKISGVTEPAKAASLLSGEEGLTTLIL 444
>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
VCD115]
Length = 602
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 187/292 (64%), Gaps = 3/292 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF + +E IL+ P RQ+MLFSAT+ + + +LSR YL P+ +D+VG + A+
Sbjct: 155 MLSVGFADAIETILQKTPDSRQTMLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQ 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + S+ +L+DL+T+Y K IVFT+TKR+ADE++ L + +EALHG
Sbjct: 215 TVEHLKVRV-GRSRTRVLADLLTIYNPE-KAIVFTRTKREADELANELIHRGLEAEALHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR G+ VLVATDVAARGLDIP VDL++ Y LP DPE++VHRSGRTG
Sbjct: 273 DLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI+M+ + R V LER G +F P ++V +SA+ + V
Sbjct: 333 RAGRTGTAIIMYGDRENREVMGLERITGVRFIERPLPTPKEVQAASAKTSADMVRKVDSG 392
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
F A+RL E G +AL ALA++SG + P + SL++ E+G TL L
Sbjct: 393 VAATFQAEAERLFSELGLEALTRALAKISGVTEPTKAASLLSGEEGLTTLIL 444
>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
Length = 611
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 195/300 (65%), Gaps = 9/300 (3%)
Query: 1 MLAVGFEEDVELIL-----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
ML +GF E VE IL ++ Q++LFSAT PSWV ++++Y+ ++DL+G +
Sbjct: 191 MLDMGFAEQVEEILSASYQKDSETNPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKK 250
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + ++ D++ VY+ G+TIVF +TK+DA+E+S+ + +
Sbjct: 251 TQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQS 310
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
S++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+++H
Sbjct: 311 SQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIH 370
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + +R +E+ G F+ V P D+++SS++ V L
Sbjct: 371 RSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGITFKRVGVPTANDIIKSSSKDAVRFL 430
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ V P+++E+F +A +LIEE+G +AL+AALA +SG + RSL+N + G+ T+ +
Sbjct: 431 DSVPPQAIEYFRVSATKLIEERGAVEALSAALAHISG-ATALEQRSLLNSDTGYTTMTMN 489
>gi|440791138|gb|ELR12392.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 723
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 202/323 (62%), Gaps = 18/323 (5%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDE 56
ML +GF + V+ IL + P +RQ++LFSAT+P WV+ +++K++ N + +DLVGN
Sbjct: 277 MLNIGFADAVDKILASAPKPDERQTLLFSATIPPWVQGIAQKHMRPSNLITVDLVGNSKL 336
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 116
K A ++ AI + + ++D++ VYA G+TIVF TK + +E+++ + +
Sbjct: 337 KAALTVRHLAICCPPPVRISTMADVVKVYAGTGRTIVFANTKAEVNELAMKSSISNVCQV 396
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q QRE TL GFR+G+F+ LVATDVAARGLDI +VDL+I + P D ET++HRSG
Sbjct: 397 LHGDIAQKQREITLQGFREGRFSCLVATDVAARGLDIDDVDLVIQTQAPKDKETYIHRSG 456
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRS-----LERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
RTGRAGK G + FT RR VR LE VG KFE + P D++ + + V
Sbjct: 457 RTGRAGKSGICVTFFT---RRDVRDGNLKWLESAVGAKFELIGTPQQPDLIRVATDAVEE 513
Query: 232 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPPSSRSLINHEQGWVTLQ 290
L VH E ++ F P+A++LI+EKG + AA +SG+++P RSL++ +G+ T+
Sbjct: 514 KLEHVHDEMIKAFLPSAEKLIQEKGENEALAAALAVISGYTQPLQKRSLLSSTEGYSTV- 572
Query: 291 LTRDSAFSRG----FMSARSVMG 309
L ++S RG FM + +G
Sbjct: 573 LLKNSLPIRGVGWVFMIIKKFLG 595
>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase [Meiothermus ruber DSM 1279]
gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
Length = 556
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 213/338 (63%), Gaps = 19/338 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE VE +LE PP RQ++LFSAT+P+W ++LS +Y ++I+++ +DE ++
Sbjct: 156 MLSMGFEEAVEQLLEATPPTRQTLLFSATLPTWARRLSERYQKAAIHINVI--KDEAIS- 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ AI ++ ++LSDL+ YA +TIVFT TK + ++++L L S S A +HG
Sbjct: 213 -YEEVAIQAPIHNRLSVLSDLLFAYAPE-RTIVFTSTKAECNDLALGLESRAHSAAPIHG 270
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RER + FR G +VLVATDVAARGLDIP VDL++HY LP+ E+++HRSGRTG
Sbjct: 271 DMGQIDRERVMERFRSGAVSVLVATDVAARGLDIPEVDLVVHYRLPDQNESYLHRSGRTG 330
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G ++++ ++R + +LER++ F+ V+PP E+V+ ++ ++A PE
Sbjct: 331 RAGRSGKVVILYGPREKRELETLERELKRNFKRVNPPTPEEVM-AAKWAMLARRIAKQPE 389
Query: 240 S-VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298
+ + + A+RLI E G DA+A LA + G + P+ +SL+ E+ WVT++L A S
Sbjct: 390 ADKKLWREQAERLIAEGGVDAVAGMLALILGGA--PTPKSLMTGEENWVTVKL----AGS 443
Query: 299 RGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCID 336
R +S + L A EIG+I + D +D
Sbjct: 444 R--ISVNRAVAVLKSA---GAGEIGRIRLDGDVAAYVD 476
>gi|118092587|ref|XP_001232052.1| PREDICTED: nucleolar RNA helicase 2 [Gallus gallus]
Length = 713
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P+WV +++KY+ + +DL+
Sbjct: 291 MLDMGFAEQVEDILRVAYKKDSEDNP---QTLLFSATCPNWVYDVAKKYMKSKYEQVDLI 347
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK+DA+E++L +
Sbjct: 348 GRKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSYGRTIVFCETKKDANELALNASI 407
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 408 KQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVES 467
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + +R +E G F+ V P D++++S++ +
Sbjct: 468 YIHRSGRTGRAGRTGICICFYQRKEENQLRYVEVKAGITFKRVGVPTATDIIKASSKDAI 527
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V ++E+F +AQ LIEEKG +ALAAALA +SG + RSL+N + G+VT+
Sbjct: 528 RCLDSVPQTAIEYFKESAQLLIEEKGPVNALAAALAHISGAT-SIEQRSLLNSDVGFVTM 586
Query: 290 QL 291
L
Sbjct: 587 VL 588
>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
gallopavo]
Length = 1461
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 192/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P+WV +++KY+ + +DL+
Sbjct: 1028 MLDMGFAEQVEDILRVAYKKDSEDNP---QTLLFSATCPNWVYDVAKKYMKSKYEQVDLI 1084
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK+DA+E++L +
Sbjct: 1085 GRRTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKDANELALNASI 1144
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 1145 KQDCQSLHGDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVES 1204
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + +R +E+ G F+ V P D++++S++ +
Sbjct: 1205 YIHRSGRTGRAGRTGICICFYQRKEENQLRYVEQKAGITFKRVGVPTATDIIKASSKDAI 1264
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V ++++F +AQ LIEEKG +ALAAALA +SG + RSL+N + G+VT+
Sbjct: 1265 RCLDSVPQSAIDYFKESAQLLIEEKGPVNALAAALAHISGAT-SIEQRSLLNSDVGFVTM 1323
Query: 290 QL 291
L
Sbjct: 1324 IL 1325
>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 466
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 192/304 (63%), Gaps = 15/304 (4%)
Query: 1 MLAVGFEEDVELILENLPPKR----QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-D 55
ML +GF EDVE+ILE + K Q +LFSAT P WVK++ Y + L+ID+ G Q
Sbjct: 159 MLNMGFAEDVEVILEGVGSKNREKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTG 218
Query: 56 EKLAEGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADE-VSLALTSII 112
++A ++ AI A +K+ IL D+I ++ GKTIVFT+TK++ADE VS ++ +
Sbjct: 219 SRVASTVRHTAIQVPFGADAKKAILEDIIALF---GKTIVFTETKKEADELVSGSVFKTL 275
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+++A+HGDI Q QR+ TL FR G F VLVATDVAARG+DI +VDL+I +E P D +T+V
Sbjct: 276 SAQAIHGDIGQKQRDATLAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYV 335
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSAEQVV 230
HRSGRTGRAG G ++L+F +Q R + +E+ +G KFE + PP E L ++A+
Sbjct: 336 HRSGRTGRAGASGISVLLFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSA 395
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
GV E+ F A L+ G+ D +A LA ++ + +SRSL+ E+G+ T
Sbjct: 396 LACRGVADETAAHFKDAAVSLLASSGSPEDVVARCLAAIARRTVQVNSRSLLTGEEGYAT 455
Query: 289 LQLT 292
+++T
Sbjct: 456 VEMT 459
>gi|449504709|ref|XP_002190981.2| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 716
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 196/324 (60%), Gaps = 15/324 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV +++KY+ IDL+
Sbjct: 294 MLDMGFAEQVEDILRVAYKKDSEDNP---QTLLFSATCPHWVYDVAKKYMKTRYEQIDLI 350
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK++A+E++L +
Sbjct: 351 GKKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSGSQGRTIVFCETKKEANELALNASI 410
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 411 KQDCQSLHGDIPQKQREITLKGFRNGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVES 470
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + +R +E+ G F+ V P D++++S++ +
Sbjct: 471 YIHRSGRTGRAGRTGICICFYQRKEEYQLRHVEQKAGITFKRVGVPTATDIIKASSKDAM 530
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V ++E+F +AQ LI+EKG +ALAAALA +SG + RSL+N + G+VT+
Sbjct: 531 RCLDSVPQTAIEYFRESAQLLIKEKGPVNALAAALAHISGAT-SIEQRSLLNSDVGFVTM 589
Query: 290 QLTRDSAFSRGFMSARSVMGFLSD 313
L S + R + L D
Sbjct: 590 ILRCSEEMSNMSYAWRRLREVLGD 613
>gi|357159473|ref|XP_003578458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Brachypodium
distachyon]
Length = 694
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 187/308 (60%), Gaps = 11/308 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVGN+ K
Sbjct: 282 MLNMGFVDDVELILGKVEDVTKVQTLLFSATLPEWVKKLSMRFLKADKKTVDLVGNEKMK 341
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K A+ ++ I+ D+I Y++GG+TI+FT+TK A E+S I S AL
Sbjct: 342 ASSSVKHLALPCNRAARSQIIPDIIKCYSRGGRTIIFTETKESASELS---GLIPGSRAL 398
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI+Q QRE + GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 399 HGDIAQAQREVVIAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 458
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + +V +ER+ G KFE +S P DV +S+ + + V
Sbjct: 459 TGRAGNTGVAVMLFEPRYKYSVTRIERESGVKFEHISAPQPTDVAQSAGNEAADAIASVS 518
Query: 238 PESVEFFTPTAQRLI---EEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A+ L+ D LA ALA+ G++ RSL++ + + TLQL T
Sbjct: 519 DSVIPVFRQQAEELLSSSSMSAVDLLAKALAKAVGYTD-IKKRSLLSSMENYTTLQLQTG 577
Query: 294 DSAFSRGF 301
++ GF
Sbjct: 578 RPMYTPGF 585
>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 822
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 200/340 (58%), Gaps = 46/340 (13%)
Query: 1 MLAVGFEEDVELILENL----PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD- 55
ML +GF +DVE++L+N+ P K Q +LFSAT PSWVK++ R+Y + L ID ++
Sbjct: 306 MLNMGFADDVEVVLKNVGSNNPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGG 365
Query: 56 EKLAEGIKLYAI--STTATSKRTILSDLITV--------------------------YAK 87
++AE ++ A+ + A +KR++L D+I V K
Sbjct: 366 ARVAETVRHLAVQLAPGADAKRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNK 425
Query: 88 G---------GKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQGK 137
G GKTIVFT+TKR+ADE VS + + ++ALHGD+ Q QR+ TL FR G
Sbjct: 426 GNQAMQQKIFGKTIVFTETKREADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGA 485
Query: 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197
F VLVATDVAARG+DI +VDL+I ++ P D +T+VHRSGRTGRAGK+G ++L+F Q R
Sbjct: 486 FNVLVATDVAARGIDIQDVDLVIQFDPPRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSR 545
Query: 198 TVRSLERDV--GCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK 255
+ +ERD+ G KF+ V PP E L ++A+ + E+ EFF +A +L+E +
Sbjct: 546 DIVRIERDLGHGFKFDLVGPPSAEATLNAAAKTSAIATQSIPEETAEFFKESAAKLLESQ 605
Query: 256 G-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
D +A LA +S + SRSL+ + G+ T+++ +
Sbjct: 606 DPVDVVARCLAAVSRRASEVQSRSLLTGQVGFATVEMVNE 645
>gi|348672301|gb|EGZ12121.1| hypothetical protein PHYSODRAFT_547952 [Phytophthora sojae]
Length = 654
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/360 (37%), Positives = 206/360 (57%), Gaps = 29/360 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML GF+E VE IL +P Q++++SAT P WV +++K+L P++IDLVG++D ++
Sbjct: 210 MLKFGFQEAVETILGWVPEGGQTVMWSATFPKWVSSMAKKFLKEPVSIDLVGDEDNQVPA 269
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
+ AI+ + +L +++ ++A G+T+VFT+TK++ADE++ +L A ALHGD
Sbjct: 270 TVAHKAINAPVRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIANSLPGQDA-RALHGD 328
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
+SQ R T++GFR G LV TD+AARGLDI NV+L++ Y LP+D E+FVHR+GRTGR
Sbjct: 329 LSQGMRTSTMSGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGR 388
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AG+ GT I+ F V ER KF +PP E ++E + E V L + +
Sbjct: 389 AGRSGTNIVFFDGRDASDVLDFERRYKFKFAHAAPPHPEQMIEGALEDVNKQLTSLPKAN 448
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGF-SRPPSSRSLINHEQGWVTLQLTRDSAFSR 299
+ F AQ +IE++G L+AALA L GF S+ ++ S++ T+Q+
Sbjct: 449 AQLFDEAAQAMIEQQGPGVLSAALALLCGFDSKKLTTLSMLTGRFRMQTVQV-------E 501
Query: 300 GFMSARSVMGFLS-------DVYPTAADEI------GKI-----HIIA--DDRVCIDTVI 339
G +AR + LS D+YP ++ GK+ H+ A DD V + +
Sbjct: 502 GVQNARELNRLLSSFMDDRVDIYPVDGGKLVFDIPQGKLESLQEHLTASSDDEVTVTAAV 561
>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
nagariensis]
Length = 727
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 189/303 (62%), Gaps = 13/303 (4%)
Query: 1 MLAVGFEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN--IDLVGNQD 55
MLA+GF EDVE IL E P Q++LFSAT+P WVK L++++L P + +DLVG+
Sbjct: 267 MLAMGFIEDVETILKAGEQQPDSIQTLLFSATLPKWVKGLTQRFL-RPGHRFMDLVGDDK 325
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 115
+ A ++ + + + +L DLIT Y GG+TI+FT +K++A E+S+ L + ++
Sbjct: 326 MQAAVTVRHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQ 385
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
ALHGD++Q RE+TL+GFR+G+F VL+ATDVAARGLD+ ++L++ + P D ET++HRS
Sbjct: 386 ALHGDLAQSMREQTLDGFRKGRFPVLIATDVAARGLDVSGIELVLMVDPPADWETYIHRS 445
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
GRTGRAG GT I + T V +E G KFE + P D+ +AE+ +A L+
Sbjct: 446 GRTGRAGSSGTCITLVTKKMEYMVAIIEGRAGMKFERIGAPQPADMARIAAERSLALLSE 505
Query: 236 VHPESVEFFTPTAQRLIEEKGTD------ALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
V P VE F A R +EE+ D ALA ALA+++G+ + +RSL+ TL
Sbjct: 506 VDPAVVEHFRDAANRHLEEQAADGRDPAEALARALAKITGY-KEMKARSLLTAHDDCTTL 564
Query: 290 QLT 292
T
Sbjct: 565 LFT 567
>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
[Saccoglossus kowalevskii]
Length = 700
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 195/297 (65%), Gaps = 10/297 (3%)
Query: 1 MLAVGFEEDVELIL------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGN 53
ML +GF + VE IL +N Q++LFSAT+P WV + ++KY+ + + +DL+G
Sbjct: 274 MLDMGFADTVEEILSASYKMDNPGENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQ 333
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSII 112
Q K A ++ AI + +SD++ VY+ K G+ ++FT+TK+DA+E+ L+ +
Sbjct: 334 QKLKTATTVEHLAIRCHYRQRAATISDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQ 393
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI+Q+QRE TL GFR GKF LVATDVAARGLDIP VDLI+ E P D E ++
Sbjct: 394 DVQVLHGDIAQNQREITLKGFRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYI 453
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG+ G ++ + ++ ++ +ER G KF V P ED++++SA+ + +
Sbjct: 454 HRSGRTGRAGRTGVSVCFYKPNEEHVLKLIERRAGIKFRRVGAPQPEDIIKTSADDALKS 513
Query: 233 LNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L+ V +++ F A++LIEEKG +ALAAALA +SG + +SRSL+N ++G+ T
Sbjct: 514 LDAVPESAIKLFHEAAEKLIEEKGPVEALAAALALVSGAT-DVTSRSLLNSDEGYTT 569
>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 923
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 200/343 (58%), Gaps = 12/343 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E I + K Q +LFSAT+PSWV+ ++ KY NPL +D VG KLA
Sbjct: 421 MLNMGFADDIETIFSYVDVKECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLA 480
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
+K +I ++ + ++L D+IT Y KG IVFT +K + DE++ T + S+ LH
Sbjct: 481 TTVKHLSIEVSSRHRSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLH 540
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GDISQHQR++T+ FR F VLVATDVAARG+D+ ++DL++ Y P DP+++VHRSGRT
Sbjct: 541 GDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRT 600
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPVVEDVLESSAEQVVATLNGV 236
GRAG+ G A+ ++ ++ R +R +E+ VG F F + P E V+ + + GV
Sbjct: 601 GRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGV 660
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPP--SSRSLINHEQGWVTLQLTR 293
+ V+FF +AQ L+ E+ ++ LA+ L+ +R + RS++ E VT+Q+
Sbjct: 661 SDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVA 720
Query: 294 DSAFSRG-FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
+ G M A +G + P +G+I I D +
Sbjct: 721 PRQLTSGDVMFAVGKLGRAAGFEPM----VGRIAIAKDPTTAV 759
>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
lyrata]
Length = 669
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 196/337 (58%), Gaps = 16/337 (4%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + P K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDPTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F + K + E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAEKKNEVSELSGLLA---GSRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF+ LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQAQREVTLAGFRNGKFSTLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ S++ +V +E++ G KFE++S P +D+ + + + V
Sbjct: 437 TGRAGNTGVAVTLY-ESRKSSVSRIEKEAGIKFEYISAPQPDDIARAVGMEAAENIKKVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + VTLQL
Sbjct: 496 DSVVPAFLGAAKELLESSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENHVTLQLE-- 552
Query: 295 SAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIAD 330
+ S V G L V P ++I + + AD
Sbjct: 553 --AGKPMYSPSYVYGLLRRVLPDDKVEQIEGLSLTAD 587
>gi|403335713|gb|EJY67037.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 972
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 190/302 (62%), Gaps = 13/302 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQ----SMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQD 55
ML +GF++D+E I+ + + Q LFSAT+P WVK ++R+YL N +DL N
Sbjct: 313 MLDLGFKDDIEWIMSQITRQCQFDVQKCLFSATIPLWVKNVARQYLKPNYRLVDLAQNLT 372
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS- 114
K A+ ++ +I +K + L+DL+ Y G+ IVFTQTK DA+ +L LT I
Sbjct: 373 NKTAKSVQHLSICCPEQNKMSTLADLLICYGGDGRAIVFTQTKVDAN--ALILTDKIKQD 430
Query: 115 -EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
E +HGDI Q+QRE TL FR GKF+VLVATDVA+RGLDIPNVDL+I E PN+ ET++H
Sbjct: 431 IEVMHGDIPQNQREVTLKRFRDGKFSVLVATDVASRGLDIPNVDLVIQVEPPNEVETYIH 490
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRT RAGK G I +T + ++ +E G KF+ + P +DV+ +S++ ++ L
Sbjct: 491 RSGRTARAGKMGVCITFYTKKSQYMIQQIESQAGIKFKNIGIPSAQDVIRASSKLMLKNL 550
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTD---ALAAALAQLSGFSRPP-SSRSLINHEQGWVTL 289
+ V+ + + +FT A+ LI+ G + AL ALA +SG+ + +RSLI ++ +TL
Sbjct: 551 DQVNDQVIPYFTEAAKDLIDMCGGNQEKALCKALAYISGYYKTAFQTRSLITGQERQITL 610
Query: 290 QL 291
+L
Sbjct: 611 EL 612
>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 681
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 197/320 (61%), Gaps = 21/320 (6%)
Query: 1 MLAVGFEEDVELILENLPP-------KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN 53
ML +GF EDV+ + + KRQ++LFSAT+P WVK ++ KY+ ++LV +
Sbjct: 264 MLEMGFREDVQKVFTAMDQVKNESTGKRQTLLFSATIPKWVKDVADKYMKKAEYVNLVKD 323
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSII 112
D++ + ++ AI + T+L++L+ VYAK +TI+F +TK+D +E+++
Sbjct: 324 SDDQASTDVQHIAIPCHWQGRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIKT 383
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------ 166
+ LHGDI+Q QRE T+ FR+G+ +L+ATDVAARGLD+ NVDL+I+ E P
Sbjct: 384 DCQVLHGDIAQEQRETTMKAFREGRLRLLIATDVAARGLDM-NVDLVINSEPPRKMSGMA 442
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
D +T+VHRSGRTGRAGK+G I ++T+ QR + +ER +G KF PP ED++++SA
Sbjct: 443 DVDTYVHRSGRTGRAGKKGICITLYTNRQRDQLNQIERKIGNKFIMKGPPDQEDLIKASA 502
Query: 227 EQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQG 285
+ + ++ V P +E F A+ L+E + LAAALA ++G ++PP SL++
Sbjct: 503 AKALKEIDNVDPSMIEIFQEKARELLETMEPEKCLAAALACITGHTKPPRRTSLMSGVPD 562
Query: 286 WVTLQLTRDSAFSRGFMSAR 305
+VT+ T S F+ A+
Sbjct: 563 YVTVLFT-----SSNFIRAK 577
>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 793
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 135/304 (44%), Positives = 187/304 (61%), Gaps = 13/304 (4%)
Query: 1 MLAVGFEEDVELILENLP---PKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDE 56
ML VGF+E+V+ I+ LP K + +LFSATMP+WVK L++KY ++ + +DLV D+
Sbjct: 352 MLEVGFQENVDEIMAGLPIGDAKPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQ 411
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIASE 115
+ + I+ AI + + D++ VY+ G+ +VF TK +A++ LAL IA E
Sbjct: 412 QTSTTIQHLAIRCPWQERANAIGDVVRVYSGSHGRCMVFASTKEEAND--LALNGRIAGE 469
Query: 116 A--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
LHGDI+Q QRE TL GFR GKF LVATDVAARGLDIP V+L+I E P D ET++H
Sbjct: 470 THVLHGDIAQKQREITLAGFRSGKFRCLVATDVAARGLDIPEVELVIQTEPPIDVETYIH 529
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
R+GRTGRAGK GT IL + Q VR +E F+ + PP +D++ +SA +L
Sbjct: 530 RAGRTGRAGKSGTCILFYKPQQESLVRRIEGKARMAFKRIGPPQPQDIVSASANDAARSL 589
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVT--LQ 290
V P F A+ +I G DAL+AALA +SG +RSL++ +G+VT +Q
Sbjct: 590 AKVSPAVYPLFHQAAEEVIARAGAVDALSAALAVISGVFE-IKTRSLLSSMEGYVTFCIQ 648
Query: 291 LTRD 294
LT D
Sbjct: 649 LTYD 652
>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
nagariensis]
Length = 424
Score = 227 bits (578), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 163/243 (67%), Gaps = 7/243 (2%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE-K 57
ML +GFE+D+E IL +P +RQ++LFSAT+P WVK ++++Y +NPL IDLVG ++ K
Sbjct: 149 MLDMGFEQDMERILGAIPEGKERQTLLFSATLPKWVKSVAKRYQNNPLTIDLVGEENTGK 208
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSIIAS 114
LA+ I+L K + L L+ +Y A GGK I+F TK ADEV++A+ +
Sbjct: 209 LADTIRLLVQQVDGAQKMSALQGLLAMYGNTAGGGKAIIFVNTKAKADEVNMAVNEFASC 268
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ALHGDISQ QRE+ L FR GK+ LVATDVAARGLDIP+VDL+ H++LP D E F+HR
Sbjct: 269 DALHGDISQAQREKALALFRDGKYNCLVATDVAARGLDIPSVDLVAHFDLPQDNEAFLHR 328
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC-KFEFVSPPVVEDVLESSAEQVVATL 233
SGRTGRAGK GTA+++FT + R++ + R E V P DV+ +++ V+ L
Sbjct: 329 SGRTGRAGKTGTAVVLFTEREARSLALILRATKVTNAELVGAPDPGDVMRTASRSVLGKL 388
Query: 234 NGV 236
+ V
Sbjct: 389 DKV 391
>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 183/297 (61%), Gaps = 11/297 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+P WVK++S ++L L DLVGN+ K
Sbjct: 136 MLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMK 195
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + +++++ ++ D+I Y+ GG+TI+FT+TK A E++ L + AL
Sbjct: 196 ASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLP---GARAL 252
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 253 HGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 312
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F +R + +ER+ G KFE VS P D+ +S+ + T+ V
Sbjct: 313 TGRAGNSGVAVMLF-DPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVS 371
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ L+ G A LA ALA+ SG++ SRSL+ VT+ L
Sbjct: 372 DSVIPAFKSAAEELLNTSGLSAVELLAKALAKASGYTE-IKSRSLLASLDNHVTVLL 427
>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
Length = 685
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 188/309 (60%), Gaps = 11/309 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVG++ K
Sbjct: 268 MLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLK 327
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S I S AL
Sbjct: 328 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GLIAGSRAL 384
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 385 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 444
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V
Sbjct: 445 TGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVS 504
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVT-LQLTR 293
+ F A++L+ G D LA ALA+ G++ RSL++ T L LT
Sbjct: 505 DSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLLTG 563
Query: 294 DSAFSRGFM 302
S ++ GF+
Sbjct: 564 RSVYAAGFV 572
>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
Length = 685
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 188/309 (60%), Gaps = 11/309 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVG++ K
Sbjct: 268 MLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLK 327
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S I S AL
Sbjct: 328 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GLIAGSRAL 384
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 385 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 444
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V
Sbjct: 445 TGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVS 504
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A++L+ G D LA ALA+ G++ RSL++ TL L T
Sbjct: 505 DSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLQTG 563
Query: 294 DSAFSRGFM 302
S ++ GF+
Sbjct: 564 RSVYAAGFV 572
>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
gi|75322251|sp|Q650T9.1|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
Length = 696
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/309 (42%), Positives = 188/309 (60%), Gaps = 11/309 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVG++ K
Sbjct: 279 MLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLK 338
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S I S AL
Sbjct: 339 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GLIAGSRAL 395
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 396 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 455
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V
Sbjct: 456 TGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVS 515
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A++L+ G D LA ALA+ G++ RSL++ TL L T
Sbjct: 516 DSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYTD-IKKRSLLSSMDNHTTLLLQTG 574
Query: 294 DSAFSRGFM 302
S ++ GF+
Sbjct: 575 RSVYAAGFV 583
>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
Length = 851
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGDVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QL 291
L
Sbjct: 712 IL 713
>gi|340502033|gb|EGR28753.1| hypothetical protein IMG5_169500 [Ichthyophthirius multifiliis]
Length = 727
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 178/301 (59%), Gaps = 13/301 (4%)
Query: 1 MLAVGFEEDVELILENLP--------PKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDL 50
ML GF++D+E I +N+ P+ Q++LFSAT+PSWV ++SRKYL N + IDL
Sbjct: 226 MLNFGFQDDIEKIFKNIVESRESLGLPRTQNLLFSATVPSWVHEISRKYLQEQNIVMIDL 285
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLAL 108
V N D K ++G+ AI+ + + D+I Y G + I+F +TK +A+E+ L
Sbjct: 286 VRNNDNKTSQGVTHLAINCPFYQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKA 345
Query: 109 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
+ LHGDI Q QRE T GFR+GKF LVAT+VA+RGLDIP VDLI+ E P +
Sbjct: 346 NIKQDLQVLHGDIPQKQREITFQGFREGKFKCLVATNVASRGLDIPEVDLIVQLEPPKEL 405
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
+T++HR+GRTGRAGK G I FT Q + +E+ K + V P D++++S
Sbjct: 406 DTYIHRAGRTGRAGKTGVCITFFTKKQVGLIERIEKKCHIKMKIVGAPQPGDIVKASQTD 465
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWV 287
+ L V+ E V F ++ LI+E G +AL+ ALA +SG+ RSL+ +G+
Sbjct: 466 IKKNLKTVNQEVVSMFQQVSEDLIQEFGPQEALSRALAYISGYIEGVKQRSLLCCLEGYC 525
Query: 288 T 288
T
Sbjct: 526 T 526
>gi|359490274|ref|XP_002269873.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis
vinifera]
Length = 711
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 183/297 (61%), Gaps = 11/297 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+P WVK++S ++L L DLVGN+ K
Sbjct: 283 MLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMK 342
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + +++++ ++ D+I Y+ GG+TI+FT+TK A E++ L + AL
Sbjct: 343 ASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLP---GARAL 399
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 400 HGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 459
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F +R + +ER+ G KFE VS P D+ +S+ + T+ V
Sbjct: 460 TGRAGNSGVAVMLF-DPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVS 518
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ L+ G A LA ALA+ SG++ SRSL+ VT+ L
Sbjct: 519 DSVIPAFKSAAEELLNTSGLSAVELLAKALAKASGYTE-IKSRSLLASLDNHVTVLL 574
>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 689
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 201/341 (58%), Gaps = 11/341 (3%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVE IL + P K Q++LFSAT+P+WV++++RK+L +DLVG++ K
Sbjct: 272 MLNMGFVDDVETILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKATRKTVDLVGDEKMK 331
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + + + ++ D+I+ Y GG+ IVFT+TK DA E++ AL S A AL
Sbjct: 332 ASNSVRHLLLPGHYSMRTQLVQDVISCYGSGGRIIVFTETKNDASELAGALKSGTA-RAL 390
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q+QRE TL GFR GKF+VLVATDVAARGLDI +V L+I E P D ET++HRSGR
Sbjct: 391 HGDIPQNQREVTLQGFRTGKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGR 450
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G ++L F + V +ER G KFE ++ P D+ ++S ++ V
Sbjct: 451 TGRAGNTGVSVLFFDRKKEYMVPQIERKAGFKFERIAAPQPLDIAKASGNTATDSVLAVS 510
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G D LA A+A++SG + RSL+ TL L +
Sbjct: 511 DTVVPLFRQAAKDLVESSGLPILDILAKAIAKISGQTE-LKRRSLLTSHDDSTTLILKAN 569
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
++ + + FL + T +E+ ++++ D + +
Sbjct: 570 TSMYSPTYAFNCLRKFLPE---TIINEVRRMNLTVDGKGAV 607
>gi|410925948|ref|XP_003976441.1| PREDICTED: nucleolar RNA helicase 2-like [Takifugu rubripes]
Length = 713
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 192/300 (64%), Gaps = 9/300 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR-----QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
ML +GF E VE IL + K Q++LFSAT P WV +++KY+ ++DL+G +
Sbjct: 288 MLDMGFAEQVEEILASSYKKDADTNPQTLLFSATCPPWVYDVAKKYMRPKCKHVDLIGKK 347
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + ++ D+I VY+ G+TIVF +TK++A+E+S+ + +
Sbjct: 348 TQKAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQS 407
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+++H
Sbjct: 408 TQSLHGDIPQKQRETTLKGFRNGSFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIH 467
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + +R +E G F V P D+++SS++ V L
Sbjct: 468 RSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFL 527
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ + ++ +F +A++LIEE+G DALAAALA +SG + RSL+N + G+ TLQLT
Sbjct: 528 DSIPVAAIGYFRASAEKLIEERGAVDALAAALAHISGAT-ALEQRSLLNSDAGYTTLQLT 586
>gi|449016019|dbj|BAM79421.1| nucleolar RNA helicase II/Gu [Cyanidioschyzon merolae strain 10D]
Length = 748
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 209/359 (58%), Gaps = 37/359 (10%)
Query: 1 MLAVGFEEDVELILENLPPK--RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
ML++GF EDVE I + +PPK RQ++LFSAT+P WV+K++ ++ P+ D+VG + +
Sbjct: 267 MLSLGFAEDVERIFQKMPPKEERQTVLFSATIPPWVQKIAAQHQRAPVVHDVVGRTETRA 326
Query: 59 AEGIKLYAISTTAT--SKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSIIAS 114
A+ ++ A+ ++ +L D++ +A+ G + IVFT TKR+ADE+++ + +S
Sbjct: 327 AKNVRHVAVRVPDADFARFAMLEDIVFAHAETGNQRCIVFTDTKREADEIAMTASIFRSS 386
Query: 115 --EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGD+SQ QRE TL FR G+F++LVATDVAARGLDI VD+I+ P D +T++
Sbjct: 387 VAQVLHGDVSQRQRELTLQQFRDGRFSILVATDVAARGLDIHEVDVIVQMRPPRDVDTYI 446
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRTGRAG+ GTA++M++ S+R +R+LER +FE PP +E VL+ +A+
Sbjct: 447 HRAGRTGRAGRSGTAVIMYSDSERGLLRALERGASIRFEQAGPPTLERVLDVAAQNAA-- 504
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-------------LSGFSRPPSSRSL 279
V S P QR +E LAAA + +SG + RSL
Sbjct: 505 -RAVGEASTNRVVPYFQRAADE-----LAAAQFEGDARRALAAALAVISGRTH-IEHRSL 557
Query: 280 INHEQGWVTLQLTRDSAFSRGFMSARSVMGF---LSDVYPTAADEIGKIHIIADDRVCI 335
+ E G TL LT +R ++ R V+G LS D+IGK+ + D R +
Sbjct: 558 LTGEAGLRTLLLT----MNRAGVTPRDVLGIVRRLSQSGKLFTDDIGKVRLCRDPRQAV 612
>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase [Meiothermus silvanus DSM 9946]
gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
9946]
Length = 538
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 191/293 (65%), Gaps = 10/293 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEEDVE +L P RQ+ LFSAT+PSW K+L+ +Y+ +P+++++V +DE+++
Sbjct: 165 MLSMGFEEDVEKLLGATPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVV--KDEQVS- 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ A+ ++ L+D+I YA +TIVFT+TK + DE++ L + I + +HG
Sbjct: 222 -YEELALQAPLQTRLNTLTDVIFAYAPE-RTIVFTRTKAEVDELATGLQARGIGAAPIHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +RER L FR+G TVLVATDVAARGLDIP VDL++H+ LP E + HRSGRTG
Sbjct: 280 DMSQRERERVLGRFREGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G IL + +RR + +LE V +F+ V+PP E+V E+ ++++A L P
Sbjct: 340 RAGRSGRVILFYGPRERRELENLEYAVKRRFKRVNPPTPEEVQEAKWQRLLARLAKQPPH 399
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ A RL+ ++ +A+A LA + G P +SLI E+G VT++L+
Sbjct: 400 ERAPWRELADRLVNDR--EAIAGLLAFMLGTVSAP--KSLITGEEGLVTVKLS 448
>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
dendrobatidis JAM81]
Length = 764
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 193/312 (61%), Gaps = 17/312 (5%)
Query: 1 MLAVGFEEDVELILENL---------PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDL 50
ML +GF E +E IL+ + P Q +LFSATMP W+K+ KY+ N + +DL
Sbjct: 305 MLDIGFAESMEKILQQVQEQKSKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNKVTLDL 364
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLAL 108
+G +K + +K YAI++ ++ +L D++ +Y +GG +TI+F +TK +A+E+++
Sbjct: 365 IGTDKQKTSATVKHYAIASHWQNRSALLGDIVAIYGRGGAGRTIIFVETKGEANELAMND 424
Query: 109 TSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 167
+ + ++ LHGDI Q QRE T+ GFR+GKFT L+ T+V ARG+DIP VDL+I+ E P+D
Sbjct: 425 KLVTMGTQVLHGDIQQKQREVTMQGFREGKFTSLITTNVCARGVDIPEVDLVINCEPPSD 484
Query: 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
E+++HRSGRTGRAGK G + + +Q ++++ R G F + P +D++ + A
Sbjct: 485 VESYIHRSGRTGRAGKSGICVTFYKPNQEYALQNIARHAGVNFIKIGAPQPKDIVAARAS 544
Query: 228 QVVATLNGVHPESV-EFFTPTAQRLIEEKGTD---ALAAALAQLSGFSRPPSSRSLINHE 283
+ T+ E V E+FT A ++E D AL+A LA L ++P ++RS+++
Sbjct: 545 DTLETVKTDLDERVLEYFTNCAGDILEHFQGDAIKALSATLAVLCNTTKPLATRSILSAN 604
Query: 284 QGWVTLQLTRDS 295
+G++TL T DS
Sbjct: 605 EGFITLLFTVDS 616
>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
Length = 384
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 148/207 (71%), Gaps = 8/207 (3%)
Query: 1 MLAVGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56
ML +GFE+D+E IL +P +RQ++LFSAT+P WVK ++++Y NPL IDLVG ++
Sbjct: 178 MLDMGFEQDMETILGAMPTAAANERQTLLFSATLPKWVKSVAKRYQQNPLTIDLVGEENT 237
Query: 57 -KLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSII 112
+LA+ I+L K + L ++++Y A GGK I+F TK ADEV+LA+
Sbjct: 238 GRLADTIRLLVQQVEGAQKMSALQGVLSMYGNTAGGGKAIIFVNTKAKADEVNLAVNEFA 297
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ALHGDISQ QRE+ L+ FR+GK+ LVATDVAARGLDIPNVDL++HY++P D E F+
Sbjct: 298 PCDALHGDISQAQREKALSLFREGKYAALVATDVAARGLDIPNVDLVVHYDVPQDNEAFL 357
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTV 199
HRSGRTGRAGK GTA+++FT + R +
Sbjct: 358 HRSGRTGRAGKTGTAVVLFTDRESRAL 384
>gi|403350666|gb|EJY74800.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 795
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 193/309 (62%), Gaps = 13/309 (4%)
Query: 1 MLAVGFEEDVELILENL----PPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQD 55
ML GF+EDVE I++ + P Q +LFSAT+P WVK+++++ + +DL N
Sbjct: 260 MLKQGFKEDVERIMQTIKAARPNGMQVLLFSATIPFWVKQVAKEQMAPDFQMVDLAQNLK 319
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS- 114
K ++ + +I+ ++ + L+D++ Y G+TIVF TK +A+ SL L+ I
Sbjct: 320 NKTSKTVNHLSINCPYQNRMSALADILICYGGLGQTIVFCSTKAEAN--SLLLSDKIKQD 377
Query: 115 -EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
E +HGDI+Q+QRE TL F++ KF+VLVATDVA+RGLDIPNVDL+I E PND E+++H
Sbjct: 378 IEVMHGDIAQNQREVTLKRFKENKFSVLVATDVASRGLDIPNVDLVIQVEPPNDVESYIH 437
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
R+GRT RAG+ GT I + + + +E+ G KF+ + P EDV+++S+ V+ L
Sbjct: 438 RAGRTARAGRTGTCITFYGKKHQYMINMIEQKAGIKFQKIGVPQPEDVIKASSRDVIKNL 497
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTD---ALAAALAQLSG-FSRPPSSRSLINHEQGWVTL 289
+ V+ E + F TA LI++ G D AL A LA LSG + SRS++ ++ +VT+
Sbjct: 498 DQVNDEVLPLFDDTADGLIQKYGGDAKKALTATLAYLSGHYKNVLGSRSVLTGQENYVTI 557
Query: 290 QLTRDSAFS 298
++ D+ F+
Sbjct: 558 EMKFDNPFN 566
>gi|348509639|ref|XP_003442355.1| PREDICTED: nucleolar RNA helicase 2-like [Oreochromis niloticus]
Length = 755
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 129/299 (43%), Positives = 193/299 (64%), Gaps = 9/299 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR-----QSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQ 54
ML +GF E VE IL + K Q++LFSAT P WV ++++KY+ N +IDL+G +
Sbjct: 316 MLDMGFAEQVEEILGSSYKKDSDTNPQTLLFSATCPPWVYEVAKKYMRPNCKHIDLIGKK 375
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + ++ D+I VY+ G+TIVF +TK++A+E+S+ + +
Sbjct: 376 TQKAATTVEHLAITCHWSQRAAVIGDVIQVYSGSHGRTIVFCETKKEANELSMNASIKQS 435
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+++H
Sbjct: 436 TQSLHGDIPQKQREMTLKGFRNGAFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIH 495
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + +R +E G F V P D+++SS++ V L
Sbjct: 496 RSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFL 555
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ V ++ +F +A++LIEE+G DALAAALA +SG + RSL+N + G+ T+QL
Sbjct: 556 DSVPVAAIGYFRASAEKLIEERGAVDALAAALAHISG-ATSLEQRSLLNSDAGFSTMQL 613
>gi|387191793|gb|AFJ68623.1| hypothetical protein NGATSA_3007300, partial [Nannochloropsis
gaditana CCMP526]
Length = 800
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 196/326 (60%), Gaps = 22/326 (6%)
Query: 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF ED+E I + Q +LFSAT PSWV+ ++RKYL NP+N+D VG + + A
Sbjct: 344 MLKMGFAEDIEKIFSYFDVTQAQMLLFSATTPSWVQVIARKYLKNPINVDAVGGGN-RAA 402
Query: 60 EGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE-- 115
I+ A+ + ++++ +L D+I ++ GG+ +VFTQTK +ADE L+ +S A+E
Sbjct: 403 TTIRHVAVKVPDSYSARKNVLEDVIAAHSCGGRVMVFTQTKSEADE--LSTSSPYAAENT 460
Query: 116 -ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
LHGDI+Q QRE TL FR G F VL+ATDVAARG+DIP VDL+I Y +D +++VHR
Sbjct: 461 RVLHGDITQRQRELTLRQFRDGFFKVLIATDVAARGIDIPEVDLVIQYRPCDDSDSYVHR 520
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
SGRTGRAG+EGT++++++ + +R LE D+ KF+ V P +EDV+ L
Sbjct: 521 SGRTGRAGREGTSVIIYSEPEWFKLRRLENDINIKFDKVGMPSIEDVVSGLCLAQTDKLK 580
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDA-----LAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
V E V +F A L+ G+DA LA LA ++G + SRSL+ + G T+
Sbjct: 581 NVDAEVVPYFKAYAAELV--AGSDAPVEEMLARCLAAMTG-RKLTVSRSLLTGQHGMTTV 637
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVY 315
D G + V+ F+ +Y
Sbjct: 638 VAEAD-----GPLREWDVLDFVKGLY 658
>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835, partial [Chlorella
variabilis]
Length = 608
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 180/298 (60%), Gaps = 10/298 (3%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEK 57
ML +GF EDVE IL Q++LFSAT+P WVK +++++L +DLVG+Q K
Sbjct: 166 MLNMGFVEDVEKILNAGVDAATVQTLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMK 225
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + + + I+ DL+ Y G+TI+FT+TK DA+E+S L + AL
Sbjct: 226 ASTSVRHLLLPCHWSQRSQIVPDLVKCYGVCGRTIIFTETKNDANELSGTLAESFGARAL 285
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL GFR GKF+VLVATDVAARGLDI V+L+I E P DPET++HRSGR
Sbjct: 286 HGDIPQGQREVTLAGFRSGKFSVLVATDVAARGLDISGVELVIQLEPPKDPETYIHRSGR 345
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG+ G + + + + ++ G KFE V P D+ + + E+ + + V
Sbjct: 346 TGRAGQTGICLTLVDRRKEGLIPYIQTKAGLKFERVGAPQPSDMAQLAGERALEAVQAVD 405
Query: 238 PESVEFFTPTAQRLIEEKGT--DALAAALAQLSGF--SRPPSSRSLINHEQGWVTLQL 291
+ FF AQ+L+E G+ DA+A ALA+++G RP RSL+ + + TL+
Sbjct: 406 VSVLPFFRAAAQKLLESVGSPEDAVALALAKITGHVEMRP---RSLLTAHEDFTTLRF 460
>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
Length = 628
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 193/299 (64%), Gaps = 9/299 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR-----QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
ML +GF + VE IL+ K Q++LFSAT P WV +++KY+ + IDL+G +
Sbjct: 206 MLDMGFADQVEDILKYAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKK 265
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+TI+F +TK++A E++L +
Sbjct: 266 TKKTAMTVEHLAIECHWSQRAAVIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQD 325
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 326 AQSLHGDIPQKQREVTLKGFRNGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIH 385
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + ++ +E+ G F+ V P D++++S++ + +L
Sbjct: 386 RSGRTGRAGRTGMCICFYQRKEDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDAIKSL 445
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ V P ++++F +A+RLIEEKG +ALAAALA +SG + RSL+N + G+VT+ L
Sbjct: 446 DSVPPSAIDYFRQSAERLIEEKGAVEALAAALAHISGAT-SIEQRSLLNSDAGYVTMML 503
>gi|395501398|ref|XP_003755082.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Sarcophilus harrisii]
Length = 736
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLV 51
ML +GF + VE I+ E+ P Q++LFSAT P WV K+++KY+ IDLV
Sbjct: 292 MLDMGFADQVEDIIHGSYKTGSEDNP---QTLLFSATCPQWVYKVAKKYMKTKYEEIDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D+I VY+ G+ I+F +TK++ E++L
Sbjct: 349 GKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGNFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + ++R ++ +E G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICICFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +VEFF P+AQRLIEEKG DALAAALA +SG S RSLIN ++G+VT+
Sbjct: 529 RSLASVSFVAVEFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLINSDKGFVTM 587
Query: 290 QL 291
L
Sbjct: 588 TL 589
>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 184/297 (61%), Gaps = 11/297 (3%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+P WVK++S K+L IDLVGN+ K
Sbjct: 243 MLRMGFVEDVELILGKVKDVNKVQTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMK 302
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + + ++ ++ D+I YA GG+TI+FT+ + A+E+S L + AL
Sbjct: 303 ASTNVRHIVLPCSTSAIPQVIPDIIRCYASGGRTIIFTEKRESANELSGLLP---GARAL 359
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E PND E ++HRSGR
Sbjct: 360 HGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGR 419
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R + ++R+ G KFE ++ P ED+ ++ + T+ V
Sbjct: 420 TGRAGNSGVAVMLY-DPRRSNISKIQRESGVKFEHITAPKAEDIAKAVGVEAAETIIQVS 478
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ L+ G A LA ALA+ +G++ SRSL++ + VTL L
Sbjct: 479 DSVIPAFKSAAEDLLNTSGLSAVELLAKALAKATGYTE-IKSRSLLSSMENHVTLLL 534
>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 526
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 181/293 (61%), Gaps = 8/293 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML GFEEDVEL+L P +RQ++LFSAT+P W + L+ ++L +PL ++ ++ E
Sbjct: 155 MLNAGFEEDVELLLAATPQERQTLLFSATLPRWAESLAARHLRDPLRANVTSDESVSYDE 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHG 119
AI S+ +LSD++ V+ G +IVFT+TK + DE++ ALTS+ +EA+HG
Sbjct: 215 ----VAIEAPLASRLGVLSDVLHVHGTGA-SIVFTRTKAEVDELAKALTSLGHLAEAVHG 269
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER L FR + TVLVATDVAARGLDIP VDL++HY P PE + HRSGRTG
Sbjct: 270 DLNQVQRERVLERFRASQVTVLVATDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTG 329
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GT +L+++ +RR + LER + + E P +DV + + L +
Sbjct: 330 RAGRAGTVVLLYSPRERRELALLERAIARRIERAGAPRPQDVQRAKLAGLQRNLAAQRDD 389
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ AQ I+ K DALA LA G + P+ RSL+ E+GW TL+LT
Sbjct: 390 DRSAWRAVAQAWIDAKDVDALAGLLALTLGGA--PAPRSLLTGEEGWTTLKLT 440
>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 684
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML GF+E VE IL +P RQ +++SAT P WV L++KYL + + IDLVG+++ +
Sbjct: 236 MLKFGFQEAVETILSWVPETRQCVMWSATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPT 295
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
+ AI+ + + L ++ YA G+++VFT+TK +A+E++ L +ALHGD
Sbjct: 296 TVSHKAINVPSNYRVVALQRILEKYASQGQSLVFTETKHEANEIANGLEGCNV-QALHGD 354
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
+SQ R T+ FR+G L TD+AARGLDI NVDL++HY LPND E FVHR+GRTGR
Sbjct: 355 LSQGVRASTMQNFRKGLVKTLACTDIAARGLDIANVDLVVHYRLPNDRENFVHRAGRTGR 414
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GT+I+ F + + R ++ LE +F + P +D ++ ++V L V +S
Sbjct: 415 AGKTGTSIVFFENQEYRDIKDLENRFKIQFAHAATPDADDFRDTKVKEVTKRLQKVSDKS 474
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS-SRSLINHEQGWVTLQL 291
+F + A +L E G +AAL L GF + + S S++ + +T+Q+
Sbjct: 475 SDFLSEEATKLYEAHGIRIFSAALNLLCGFEKGNTLSVSMLTGKSNMLTVQI 526
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 183/292 (62%), Gaps = 8/292 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE VE +L P +RQ+++FSAT+P W K+L ++L P +++V QDE+++
Sbjct: 164 MLSMGFEEAVETLLGATPAERQTLMFSATLPGWAKRLVGRHLKEPTVVNVV--QDEEVS- 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ AI + +++ + LSDL+ + + IVFT+TK++ADEV+ ALT+ A+EA+HG
Sbjct: 221 -YREIAIEASPSARMSALSDLLHAHGPE-RAIVFTRTKKEADEVARALTARGHAAEAVHG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRER++ FR G+ VLVATDVAARGLDIP VDL++H LP E++ HRSGRTG
Sbjct: 279 DLNQTQRERSVGRFRSGQVGVLVATDVAARGLDIPEVDLVVHLRLPERAESYQHRSGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GT I+ +S +RR + LER VG KFE P E+V ++ ++ E
Sbjct: 339 RAGRSGTVIIFHSSRERRELGQLERAVGRKFEHGRAPAPEEVQQAKIAGLLRRAAAQSEE 398
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ AQ IE + D + A P RSL+ ++GW TL+L
Sbjct: 399 DRAVWREVAQAWIERE--DVESLAGLLAMLLGGAPKPRSLLTGDEGWRTLEL 448
>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
Length = 759
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 129/300 (43%), Positives = 196/300 (65%), Gaps = 9/300 (3%)
Query: 1 MLAVGFEEDVELIL-----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNP-LNIDLVGNQ 54
ML +GF E VE IL ++ K Q++LFSAT PSWV +++KY+ + +++DL+G +
Sbjct: 324 MLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKK 383
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + +++ D+I VY+ G+TIVF +TK++A E+SL + +
Sbjct: 384 TQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLNTSIKQS 443
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I PND E+++H
Sbjct: 444 AQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIH 503
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + ++ +E+ G F+ V P D+++SS++ V L
Sbjct: 504 RSGRTGRAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRFL 563
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ V +V +F AQ LI+++G +ALAAALA +SG + RSLIN E G+ ++ L+
Sbjct: 564 DSVPAVAVGYFREAAQELIQQRGAVEALAAALAHISG-ATSLEQRSLINSEPGFSSMILS 622
>gi|449667535|ref|XP_002167654.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 685
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 186/296 (62%), Gaps = 12/296 (4%)
Query: 1 MLAVGFEEDVELILEN------LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI-DLVGN 53
M+ +GF++DVE IL++ PP + LF T+P W+++ S+KYL + L + DL+G
Sbjct: 214 MMDMGFQDDVEKILKHSYTSARKPP---TFLFFGTVPPWLQQNSKKYLSSNLKVFDLIGE 270
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSII 112
K A ++ I + + ++ D++ +Y+ K GKTI+FT TK++A+E+S+ +SI
Sbjct: 271 DKNKGATPVQHKVIKCSYWERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELSVE-SSIP 329
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
S+ LHGDISQ QRE TL GFR GKF L+ATDVAARGLDIP VDL+I E PND + ++
Sbjct: 330 DSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPNDIDFYI 389
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRTGRAG+ G ++ + Q + ++E+ G FE ++PP E+++ S A+ + +
Sbjct: 390 HRAGRTGRAGRSGVCVVFYKPGQESEIAAVEKRTGVTFEKITPPNPEEIVSSCADDAIRS 449
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L V+ + + FF A+ LIE+KG + AA + ++RSL+ +G+ T
Sbjct: 450 LEKVNSDVISFFIKPARELIEKKGAEEALAAALAYVSGTTELANRSLLTSRKGYTT 505
>gi|75773731|gb|AAI04622.1| DDX50 protein [Bos taurus]
Length = 446
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 4 MLDLGFAEQVEDILHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 60
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 61 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 120
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 121 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 180
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 181 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 240
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 241 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 299
Query: 290 QL 291
L
Sbjct: 300 TL 301
>gi|126343381|ref|XP_001380653.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Monodelphis domestica]
Length = 744
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLV 51
ML +GF + VE I+ E+ P Q++LFSAT P WV K+++KY+ IDLV
Sbjct: 300 MLDMGFADQVEDIIHGSYKTGSEDNP---QTLLFSATCPQWVYKVAKKYMKTKYEEIDLV 356
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D+I VY+ G+ I+F +TK++ E++L
Sbjct: 357 GKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPHI 416
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 417 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 476
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + ++R ++ +E G F+ V P D+++S + +
Sbjct: 477 YIHRSGRTGRAGRTGICICFYQPNERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDAI 536
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +VEFF P+AQRLIEEKG DALAAALA +SG S RSLIN ++G+VT+
Sbjct: 537 RSLASVSFVAVEFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLINSDKGFVTM 595
Query: 290 QL 291
L
Sbjct: 596 TL 597
>gi|355782883|gb|EHH64804.1| hypothetical protein EGM_18115 [Macaca fascicularis]
Length = 783
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 187/302 (61%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAA LA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAATLAHISG-AMSVDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|432852515|ref|XP_004067286.1| PREDICTED: nucleolar RNA helicase 2-like [Oryzias latipes]
Length = 775
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 202/324 (62%), Gaps = 11/324 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR------QSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGN 53
ML +GF E VE IL +L K+ Q++LFSAT P WV ++++KY+ ++DL+G
Sbjct: 340 MLDMGFAEQVEEIL-SLSYKKDSDTNPQTLLFSATCPPWVYEVAKKYMRPGCKHVDLIGK 398
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII 112
+ ++ A ++ AI+ + + ++ D+I VY+ G+TI+F +TK++A+E+S+ +
Sbjct: 399 KTQRAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEANELSMNASIKQ 458
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+S+ LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+++
Sbjct: 459 SSQTLHGDIPQKQREITLKGFRNGAFEVLVATNVAARGLDIPEVDLVVQSSPPKDVESYI 518
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG+ G I + + +R +E G F V P D++++S++ V
Sbjct: 519 HRSGRTGRAGRTGVCICFYQRKEEEQLRYVENKAGITFRRVGVPTANDIIKASSKDAVRF 578
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L+ V ++E+F +A++LIEE+G +ALAAALA +SG + RSL+N + G+ T+Q+
Sbjct: 579 LDSVPVTAIEYFKESAEKLIEERGAVEALAAALAHISGAT-SLEQRSLLNSDAGYTTIQM 637
Query: 292 TRDSAFSRGFMSARSVMGFLSDVY 315
T + R++ L D +
Sbjct: 638 TCSQEMHNLGYAWRTIKEQLGDEF 661
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 129/294 (43%), Positives = 193/294 (65%), Gaps = 11/294 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE IL PP RQ++LFSAT+P+W ++L+ +Y+ +P+ I++V E
Sbjct: 156 MLSMGFEEEVEAILAATPPSRQTLLFSATLPTWARRLAERYMKSPVVINVVKE------E 209
Query: 61 GIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
G+ + A + R +LSDL+ V A + IVFT+TK + +EV+ L + A+ A+H
Sbjct: 210 GVTYQEEAILAPTDRLALLSDLLYVKAP-KRAIVFTKTKAETEEVATGLLRLGHAARAIH 268
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ RER + FR+G+ VLVATDVAARGLDIP VDL++HY LP+ PET+ HRSGRT
Sbjct: 269 GDLSQADRERVMRAFREGEVRVLVATDVAARGLDIPEVDLVVHYRLPDKPETYQHRSGRT 328
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAG+ G ++++ ++R + LER VG F+ V+PP E+VLE+ + ++A L V
Sbjct: 329 GRAGRGGEVVILYGPREKRELAELERAVGRPFKRVNPPTPEEVLEAKWQHLLARLARVPE 388
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ + + A RL E + +AA +A + G + P RSL+ E+GW+TL+ T
Sbjct: 389 KDYKLYLDFAGRLFAEGRVEVVAALMALILGGA--PKERSLLTGEEGWITLKAT 440
>gi|12652909|gb|AAH00210.1| DDX50 protein, partial [Homo sapiens]
Length = 467
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 25 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 81
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 82 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 141
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 142 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 201
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 202 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 261
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 262 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 320
Query: 290 QL 291
L
Sbjct: 321 TL 322
>gi|426255666|ref|XP_004021469.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Ovis aries]
Length = 644
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 296 MLDLGFAEQVEDILHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 413 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 473 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 533 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 TL 593
>gi|75319612|sp|Q41382.1|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
Length = 685
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 197/336 (58%), Gaps = 14/336 (4%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+PSWVK++S ++L + +DLV +Q K
Sbjct: 271 MLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMK 330
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ I +A+++ ++ D+I Y GG++I+FT+TK A +++ LT + L
Sbjct: 331 ASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPL 387
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 388 HGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGR 447
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R +V +ER+ G KFE +S P DV ++ + A + +
Sbjct: 448 TGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQIS 506
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ F A+ L+ G D L+ ALA+ +G+S RSL+ +G+VTL L
Sbjct: 507 DSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSD-IKERSLLTGMEGYVTLLLDAG 565
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIAD 330
F + + FL T AD I + + AD
Sbjct: 566 RPFYGQSFAYTVLKRFLP---ATKADSIMGVALTAD 598
>gi|348685693|gb|EGZ25508.1| hypothetical protein PHYSODRAFT_326516 [Phytophthora sojae]
Length = 962
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 209/358 (58%), Gaps = 25/358 (6%)
Query: 1 MLAVGFEEDVELILENLPP-------KRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVG 52
ML +GF EDV+ + + KRQ++LFSAT+P WV ++ KY+ ++LV
Sbjct: 258 MLEMGFREDVQKVFAAMEQTKNESSGKRQTLLFSATIPKWVTDVADKYMAKDREYVNLVK 317
Query: 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI 111
+ D++ + ++ AI + T+L++L+ VYAK +TI+F +TK+D +E+++
Sbjct: 318 DSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYAKKDSRTIIFAETKKDCNELAVHPEIK 377
Query: 112 IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN----- 166
+ LHGDI+Q QRE T+ FR+G+ +L+ATDVAARGLD+ NVDL+I+ E P
Sbjct: 378 TDCQVLHGDIAQEQRETTMKAFREGRLRLLIATDVAARGLDM-NVDLVINSEPPRKMSGM 436
Query: 167 -DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
D +T+VHRSGRTGRAGK+G I ++T+ QR + +ER +G KF PP ED++++S
Sbjct: 437 ADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQLTQIERKIGNKFIMKGPPDQEDLIKAS 496
Query: 226 AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQ 284
A + + +N V P +E F A L+ + + LAAALA ++G ++PP SL++
Sbjct: 497 AAKALTEINNVDPSMIEIFQEKAAELLGQMDPEKCLAAALACITGHTKPPRRTSLMSGVP 556
Query: 285 GWVTLQLTRDSAFSRGFMSARSVM--GFLSDVYPTAADEIGKIHIIADDR-VCIDTVI 339
+VT+ T S F+ A+ + D+ A++I ++ + D C D I
Sbjct: 557 DYVTVLFT-----SSNFIRAKGYVWNAVNRDIPENFANDIKQLTLTEDSMGACFDLPI 609
>gi|395501396|ref|XP_003755081.1| PREDICTED: nucleolar RNA helicase 2 [Sarcophilus harrisii]
Length = 798
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 193/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 310 MLDMGFAEQVEEILTVAYKKDSEDNP---QTLLFSATCPHWVYDVAKKYMKSTYEQVDLI 366
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI+ + + ++ D+I VY+ G+TI+F +TK++A E+SL +
Sbjct: 367 GKKTQKAAVTVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESI 426
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR GKF VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 427 KQDAQSLHGDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 486
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + ++ + +ER G F+ V P +++++S++ +
Sbjct: 487 YIHRSGRTGRAGRTGICICFYQKKEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAI 546
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F TAQ+LI+EKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 547 RFLDSVPPAAINNFRQTAQKLIDEKGAVEALAAALAHISGATT-VEQRSLINSDVGFVTM 605
Query: 290 QL 291
L
Sbjct: 606 VL 607
>gi|363735177|ref|XP_421574.3| PREDICTED: nucleolar RNA helicase 2-like [Gallus gallus]
Length = 760
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/304 (43%), Positives = 190/304 (62%), Gaps = 19/304 (6%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL EN P Q++LFSAT P WV +++KY+ +DL+
Sbjct: 353 MLDMGFAEQVEEILGFAYKKGSENSP---QTLLFSATCPRWVYDVAKKYMKGEYEQVDLI 409
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + ++ A ++ AI ++ + +L D+I VY+ G+TIVF +TK++A+E LAL S
Sbjct: 410 GKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGSHGRTIVFCETKKEANE--LALNS 467
Query: 111 IIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
+ EA LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D
Sbjct: 468 ALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDV 527
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
++++HRSGRTGRAG+ G I + + ++ +E+ G F + P D++++S++
Sbjct: 528 DSYIHRSGRTGRAGRTGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATDIIKASSDD 587
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWV 287
L+ V P ++++F +A+ LIEEKG DALAAALA +SG S RSL+N G+V
Sbjct: 588 AKKCLDAVPPSAIDYFRQSARELIEEKGAVDALAAALAHISGASS-IQQRSLLNSTAGFV 646
Query: 288 TLQL 291
T+ L
Sbjct: 647 TMVL 650
>gi|426255664|ref|XP_004021468.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Ovis aries]
Length = 738
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 296 MLDLGFAEQVEDILHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 413 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 473 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 533 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 TL 593
>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
gi|296472173|tpg|DAA14288.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
gi|440895816|gb|ELR47910.1| ATP-dependent RNA helicase DDX50 [Bos grunniens mutus]
Length = 737
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDILHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
Length = 602
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/304 (43%), Positives = 191/304 (62%), Gaps = 19/304 (6%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLV 51
ML +GF E VE IL EN P Q++LFSAT P WV +++KY+ D +DL+
Sbjct: 195 MLDMGFAEQVEEILGFAYKKGSENNP---QTLLFSATCPRWVYDVAKKYMKDEYEQVDLI 251
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + ++ A ++ AI ++ + +L D+I VY+ G+TIVF +TK++A+E LAL S
Sbjct: 252 GKKTQRTATTVEHLAIQCRSSQRVEVLGDIIQVYSGSHGRTIVFCETKKEANE--LALNS 309
Query: 111 IIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
+ EA LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D
Sbjct: 310 ALKQEAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDV 369
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
++++HRSGRTGRAG+ G I + + ++ +E+ G F + P +++++S++
Sbjct: 370 DSYIHRSGRTGRAGRAGICICFYQRKEEDLLKQVEQKAGITFRRIGVPSATEIIKASSDD 429
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWV 287
L+ V P ++++F +A+ LIEEKG DALAAALA +SG S RSL+N G+V
Sbjct: 430 AKKCLDAVPPSAIDYFRQSARELIEEKGAVDALAAALAHISGAS-SIQQRSLLNSTAGFV 488
Query: 288 TLQL 291
T+ L
Sbjct: 489 TMVL 492
>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
Length = 727
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 190/300 (63%), Gaps = 9/300 (3%)
Query: 1 MLAVGFEEDVELIL-----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
ML +GF E VE IL ++ Q++LFSAT P WV +++KY+ ++DL+G +
Sbjct: 312 MLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYMRPSCKHVDLIGKK 371
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + ++ D+I VY+ G+ IVF +TK++A+E++L +
Sbjct: 372 TQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEANELALNASIKQN 431
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+++LHGDI Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL++ P D E+++H
Sbjct: 432 AQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIH 491
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + +R +E G F V P D+++SS++ V L
Sbjct: 492 RSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFRRVGVPTANDIIKSSSKDAVRFL 551
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ + ++ +F A++LIEEKG DALAAALA +SG + RSL++ + G+ TLQLT
Sbjct: 552 DSISVAAIGYFREAAEKLIEEKGAVDALAAALAHISGAT-ALEQRSLLSSDAGYTTLQLT 610
>gi|410975243|ref|XP_003994043.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Felis catus]
Length = 645
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 297 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 353
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 354 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 413
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 414 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 473
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 474 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 533
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 534 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 592
Query: 290 QL 291
L
Sbjct: 593 TL 594
>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
Length = 737
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 186/300 (62%), Gaps = 13/300 (4%)
Query: 1 MLAVGFEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN--IDLVGNQD 55
MLA+GF EDVE IL EN + Q++LFSAT+P WV+ L++++L P + +DLVG+
Sbjct: 269 MLAMGFIEDVETILKQGENNRDQIQTLLFSATLPKWVQGLTQRFL-RPGHKFLDLVGDDR 327
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 115
+ A +K + + + +L DLIT Y GG+TI+FT +K++A E+S+ L + ++
Sbjct: 328 MQAAVTVKHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLGDSLGAQ 387
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
ALHGD++Q RE+TL+GFR+G+F +L+ATDVAARGLD+ ++L++ + P D ET++HRS
Sbjct: 388 ALHGDLAQSMREQTLDGFRKGRFAILIATDVAARGLDVTGIELVLMVDPPADWETYIHRS 447
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
GRTGRAG G + + T V +E+ G KFE + P D+ +AE+ ++ L
Sbjct: 448 GRTGRAGSSGVCVTLVTKKMEYMVPIIEKRAGMKFERIGAPQPADMARIAAERTLSLLGE 507
Query: 236 VHPESVEFFTPTAQRLIEEKGTD------ALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
V P V F A+R + E D ALA ALA+++G+ + +RSL+ TL
Sbjct: 508 VDPAVVGHFREAAERYLSESAADGRDPAEALARALAKITGY-KVMKARSLLTAHDDCTTL 566
>gi|348575872|ref|XP_003473712.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Cavia porcellus]
Length = 735
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 294 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 350
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 410
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 411 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 470
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 471 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 530
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 531 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 589
Query: 290 QL 291
L
Sbjct: 590 TL 591
>gi|395820612|ref|XP_003783657.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Otolemur garnettii]
Length = 737
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASN-FEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
jacchus]
Length = 643
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
troglodytes]
gi|397489928|ref|XP_003815963.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
paniscus]
Length = 643
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
leucogenys]
Length = 643
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|395741709|ref|XP_003777630.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pongo
abelii]
gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
Length = 643
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|338716830|ref|XP_003363525.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Equus
caballus]
Length = 644
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 296 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 413 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 473 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 533 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 TL 593
>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
Length = 669
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 227 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 283
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 284 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 343
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 344 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 403
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 404 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 463
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 464 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 522
Query: 290 QL 291
L
Sbjct: 523 TL 524
>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
Length = 710
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 268 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPPWVYKVAKKYMKSRYEQVDLV 324
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 325 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 384
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 385 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 444
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 445 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 504
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 505 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 563
Query: 290 QL 291
L
Sbjct: 564 TL 565
>gi|344275095|ref|XP_003409349.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Loxodonta africana]
Length = 734
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
leucogenys]
Length = 737
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pongo
abelii]
gi|55976580|sp|Q9BQ39.1|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
Length = 737
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|355683371|gb|AER97085.1| DEAD box polypeptide 50 [Mustela putorius furo]
Length = 736
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|384475931|ref|NP_001245111.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
jacchus]
gi|380816428|gb|AFE80088.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|383421495|gb|AFH33961.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
gi|384949360|gb|AFI38285.1| ATP-dependent RNA helicase DDX50 [Macaca mulatta]
Length = 737
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
Length = 738
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 296 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 413 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 473 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 533 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 TL 593
>gi|410975241|ref|XP_003994042.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Felis catus]
Length = 739
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 297 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 353
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 354 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 413
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 414 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 473
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 474 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 533
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 534 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 592
Query: 290 QL 291
L
Sbjct: 593 TL 594
>gi|410349717|gb|JAA41462.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|149511215|ref|XP_001519332.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ornithorhynchus
anatinus]
Length = 790
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/301 (41%), Positives = 184/301 (61%), Gaps = 13/301 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF EDVE I+ E+ P Q++LFSAT P WV K+++KY+ +DL+
Sbjct: 340 MLDMGFAEDVEKIISGAYNRESEDNP---QTLLFSATCPQWVYKVAKKYMKAKYEQVDLI 396
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + ++ D+I VY+ G+ IVF +TK+DA E++L
Sbjct: 397 GKLTQKAATTVEHLAIQCRENQRAAVIGDVIQVYSGNQGRAIVFCETKKDATEMALNSNI 456
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ALHGDI+Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 457 KQEAQALHGDIAQSQREITLKGFRNGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVES 516
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I F +R +R +E+ G F+ V+ P + D++++S++ +
Sbjct: 517 YIHRSGRTGRAGRTGICICFFQPRERCQLRYVEQKSGITFKHVNIPSLVDIIQASSKDAI 576
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290
++L V E++E F A+ LIEEKG AA + RSLI+ ++G+VT+
Sbjct: 577 SSLASVPLEALEKFRTYAKTLIEEKGAVEALAAALAHIAGASSFQQRSLISSDKGFVTVA 636
Query: 291 L 291
L
Sbjct: 637 L 637
>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
troglodytes]
gi|397489926|ref|XP_003815962.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
paniscus]
gi|410227544|gb|JAA10991.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410259742|gb|JAA17837.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
gi|410288618|gb|JAA22909.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Pan troglodytes]
Length = 737
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
Length = 735
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 293 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 349
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 350 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 409
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 410 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 469
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 470 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 529
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 530 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 588
Query: 290 QL 291
L
Sbjct: 589 TL 590
>gi|402880683|ref|XP_003903927.1| PREDICTED: ATP-dependent RNA helicase DDX50 [Papio anubis]
Length = 680
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 238 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 294
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 295 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 354
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 355 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 414
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 415 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 474
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 475 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 533
Query: 290 QL 291
L
Sbjct: 534 TL 535
>gi|338716828|ref|XP_001503679.3| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Equus
caballus]
Length = 739
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 296 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 413 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 473 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 533 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 TL 593
>gi|344237687|gb|EGV93790.1| ATP-dependent RNA helicase DDX50 [Cricetulus griseus]
Length = 670
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 191/304 (62%), Gaps = 19/304 (6%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 284 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 340
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 341 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 400
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 401 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 460
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 461 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 520
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFS--RPPSSRSLINHEQGWV 287
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S P RSLI ++G+V
Sbjct: 521 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSFEP---RSLITSDKGFV 577
Query: 288 TLQL 291
T+ L
Sbjct: 578 TMTL 581
>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
melanoleuca]
Length = 739
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 297 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPPWVYKVAKKYMKSRYEQVDLV 353
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 354 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 413
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 414 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 473
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 474 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 533
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 534 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 592
Query: 290 QL 291
L
Sbjct: 593 TL 594
>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
Length = 711
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|345798960|ref|XP_850174.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Canis lupus
familiaris]
Length = 739
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 297 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 353
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 354 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 413
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 414 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 473
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 474 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 533
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 534 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 592
Query: 290 QL 291
L
Sbjct: 593 TL 594
>gi|351702494|gb|EHB05413.1| ATP-dependent RNA helicase DDX50 [Heterocephalus glaber]
Length = 737
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITCDKGFVTM 590
Query: 290 QL 291
L
Sbjct: 591 TL 592
>gi|428186550|gb|EKX55400.1| hypothetical protein GUITHDRAFT_57670, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 193/316 (61%), Gaps = 19/316 (6%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDL 50
ML +GF++ V+ I E+ P Q++LFSAT+P W+ + + KY D N ++DL
Sbjct: 155 MLNIGFKDAVDKIFKGVMGEEAESKPEHVQTLLFSATIPDWIAQTTEKYFDKNNTAHVDL 214
Query: 51 V-GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLAL 108
V G Q ++ A I+ I S+ + D++ YA GKTI+FT+TK++A+E LAL
Sbjct: 215 VSGQQGQETATRIEHLCIPCPWNSRARTIGDIVLCYAGSHGKTIIFTETKKEANE--LAL 272
Query: 109 TSIIASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166
I + LHGDI+Q QRE T FR GKF LVATDVAARGLDIP VDL+I
Sbjct: 273 DDAIKQDCAVLHGDIAQAQRETTFQAFRDGKFRCLVATDVAARGLDIPEVDLVIMCHPTK 332
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
D +T+VHRSGRTGRAG+ G A+ FT + +R++E + K +S P E++++++A
Sbjct: 333 DADTYVHRSGRTGRAGRSGVAVTFFTPREMHQLRAIEWRIKTKMRQISAPQPEEIVKANA 392
Query: 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQG 285
+ ++ VH + + F TA+ +I++ G T AL AALA ++G ++P +RSL++ +G
Sbjct: 393 RDIKLSVEEVHSDVLPLFEKTAEEMIQDMGATKALCAALAVIAGQTKPLPARSLLSSLEG 452
Query: 286 WVT--LQLTRDSAFSR 299
+ T ++ T+ A SR
Sbjct: 453 FKTFVIKTTQPMAESR 468
>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
Length = 734
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 292 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 529 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 587
Query: 290 QL 291
L
Sbjct: 588 TL 589
>gi|15241726|ref|NP_201025.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
gi|108861902|sp|Q39189.2|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
Length = 671
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 186/322 (57%), Gaps = 15/322 (4%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD---GSRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S + + V
Sbjct: 437 TGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L
Sbjct: 496 DSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA- 553
Query: 295 SAFSRGFMSARSVMGFLSDVYP 316
+ S V G L V P
Sbjct: 554 ---GKPIYSPSFVYGLLRRVLP 572
>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
gi|55976576|sp|Q99MJ9.1|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
box protein 50; AltName: Full=Gu-beta; AltName:
Full=Nucleolar protein Gu2
gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
Length = 734
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 292 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 529 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 587
Query: 290 QL 291
L
Sbjct: 588 TL 589
>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
Length = 671
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 186/322 (57%), Gaps = 15/322 (4%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD---GSRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S + + V
Sbjct: 437 TGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L
Sbjct: 496 DSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA- 553
Query: 295 SAFSRGFMSARSVMGFLSDVYP 316
+ S V G L V P
Sbjct: 554 ---GKPIYSPSFVYGLLRRVLP 572
>gi|405978792|gb|EKC43154.1| Nucleolar RNA helicase 2 [Crassostrea gigas]
Length = 671
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 195/316 (61%), Gaps = 10/316 (3%)
Query: 1 MLAVGFEEDVELILENL-----PPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGN 53
ML +GF EDVE I+ + Q++LFSAT+PSWV +RKY+ D + LV +
Sbjct: 288 MLDMGFAEDVETIISSAYNNGSGENPQTLLFSATLPSWVHDTARKYMNKDKLAKVSLVNS 347
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSII 112
Q+ + + ++ AI ++ + +++ D++ VY+ K G+ I+F +TK++AD +S +
Sbjct: 348 QENRTSTTVQHLAIRSSFWDRPSVIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEYIKQ 407
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q +RE L FR+GKF VL+ TDVAARGLDIP VDL+I P D ++++
Sbjct: 408 DAHVLHGDIPQEKRETVLKSFREGKFNVLLTTDVAARGLDIPEVDLVIQCNPPEDVDSYI 467
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAGK G I + + + ++E KF+ VS P ED++ +S E V +
Sbjct: 468 HRSGRTGRAGKNGVCICFYKPEEEMKLANVEYRAKIKFKKVSGPTKEDIISASVEDAVRS 527
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ GV E++++F +A+ LI E+G DALAAALA +SG S +SRS+++ ++G+ T L
Sbjct: 528 IEGVQSETLDYFRSSAKELIAERGAEDALAAALALISG-STKITSRSMLSSKEGFTTFYL 586
Query: 292 TRDSAFSRGFMSARSV 307
++ R R++
Sbjct: 587 KTNTEIQRNNYVYRAL 602
>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
Length = 664
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 179/302 (59%), Gaps = 4/302 (1%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKL 58
ML GF+E++E I+ ++ Q +LFSAT+P WVK+LS KY++ N +I+L+ + +
Sbjct: 184 MLNFGFQENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQT 243
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K YA+ + D+++VY + +TI+F +TKR+ +E+ L ++ L
Sbjct: 244 STTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQPL 303
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QR T GF+ GKF LVAT+VAARGLD P VDLII P D E+++HRSGR
Sbjct: 304 HGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGR 363
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAGK+G I ++ + +ER KF +S P +D++++S+ + +L V
Sbjct: 364 TGRAGKDGVCITFYSKKDMGLIERVERVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVS 423
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296
E V+ F P AQ +I +ALA ALA +SG+ +RS++ +G++T L +
Sbjct: 424 KEIVDMFQPVAQEIISRCDPVEALARALACVSGYKDKLQNRSMLGSFEGYITYVLRSSTP 483
Query: 297 FS 298
F
Sbjct: 484 FQ 485
>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 734
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 292 MLDLGFAEQVEDIIHESYKSDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 529 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 587
Query: 290 QL 291
L
Sbjct: 588 TL 589
>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 180/301 (59%), Gaps = 4/301 (1%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKL 58
ML GF+E++E I+ ++ Q +LFSAT+P WVK+LS+KY++ N +I+L+ + +
Sbjct: 184 MLNFGFQENIEKIMSYFNDRKIQMLLFSATIPDWVKELSQKYMEANTKHINLIKRHETQT 243
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K YA+ + D+++VY + +TI+F +TKR+ +E+ L ++ L
Sbjct: 244 STTVKHYALQCAKNQLTGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQPL 303
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QR T GF+ GKF LVAT+VAARGLD P VDLII P D E+++HRSGR
Sbjct: 304 HGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGR 363
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAGK+G I ++ + +ER KF +S P +D++++S+ + +L V
Sbjct: 364 TGRAGKDGICITFYSKKDMSLIERVERVAKIKFIKISAPQHQDIIKASSRDLQTSLQVVS 423
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296
E V+ F P AQ ++ +ALA ALA +SG+ +RS++ +G++T L +
Sbjct: 424 KEIVDLFQPVAQEILSRCDPVEALARALACVSGYKDKLQNRSMLGSFEGYITYVLRSSTP 483
Query: 297 F 297
F
Sbjct: 484 F 484
>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 711
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 192/316 (60%), Gaps = 9/316 (2%)
Query: 1 MLAVGFEEDVELIL----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56
ML VGF + VE +L E K Q +LFSATMP ++K KY+ +D VG +
Sbjct: 273 MLEVGFVDTVEKMLSMAVEQAGQKPQMILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMN 332
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIASE 115
+ + G++ A+ ++ T+++D++ VY+ G+T++FTQTKRDA+E++L T +
Sbjct: 333 RTSTGVQHLALRCPWQARNTVIADVVQVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQ 392
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
LHGDI+Q QRE +L FR GK LVATDVAARG+DIP VDL++ E P D E+++HRS
Sbjct: 393 VLHGDIAQKQRELSLQCFRDGKVRCLVATDVAARGIDIPEVDLVVQCEPPKDVESYIHRS 452
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
GRTGRAG++GT I + +Q + +R +ER G F + P D++++SA L+
Sbjct: 453 GRTGRAGRKGTCICFYKPNQEQQLREVERRAGISFTRIGAPQPADIIKASARDATRFLDS 512
Query: 236 VHPESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293
V + + +F AQ IEEKG DALAAALA +SG S RSL++ +G+ LT
Sbjct: 513 VTNDVLVYFQEAAQAFIEEKGNAVDALAAALAHISG-STTIKGRSLLSSLEGFTAFHLTT 571
Query: 294 DSAFSRGFMSARSVMG 309
D+ RG SV+G
Sbjct: 572 DTEI-RGKAFVFSVLG 586
>gi|157863878|ref|XP_001687490.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
Friedlin]
Length = 674
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 14/306 (4%)
Query: 1 MLAVGFEEDVELILENLP----------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF++D+EL+L + P Q++LFSAT+P WV S D ID+
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSVGAERPAHQTLLFSATVPEWVHTCSFIAKDKEF-IDM 302
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 109
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+ T
Sbjct: 303 VGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNT 362
Query: 110 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 363 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L V + + F A L+++ + LA+ALA +SG++ ++R LI G+VT
Sbjct: 482 AEDLARVERRATDLFMEQAAELLKDADPVEILASALAVMSGYTSNITARGLITGTPGYVT 541
Query: 289 LQLTRD 294
+Q+T D
Sbjct: 542 VQMTSD 547
>gi|224052119|ref|XP_002191015.1| PREDICTED: nucleolar RNA helicase 2-like [Taeniopygia guttata]
Length = 589
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 182/301 (60%), Gaps = 13/301 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLV 51
ML +GF E VE IL EN P Q++LFSAT P WV +++KY+ D IDL+
Sbjct: 180 MLDMGFAEQVEEILGSSYKRGSENNP---QTLLFSATCPRWVYDVAKKYMRDEYEQIDLI 236
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + ++ A ++ AI ++ + +L D+I VY+ G+TIVF +TK++A+E+++ +
Sbjct: 237 GKKAQRTATTVEHLAIQCRSSQRAGVLGDIIQVYSGSRGRTIVFCETKKEANELAMNASL 296
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VL+AT+VAARGLDIP VDL+I P D ++
Sbjct: 297 KQDAQSLHGDIPQKQREITLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDS 356
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I +F + ++ +E G F+ V P DV+++S+
Sbjct: 357 YIHRSGRTGRAGRTGICICLFQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAK 416
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290
L V P +V++F +A+ LI+EKG A AA + RSL+N G+VT+
Sbjct: 417 KLLEAVPPAAVDYFRKSAEELIDEKGAVAALAAALAHISGAAHIQQRSLLNSTAGFVTMV 476
Query: 291 L 291
L
Sbjct: 477 L 477
>gi|431904164|gb|ELK09586.1| ATP-dependent RNA helicase DDX50 [Pteropus alecto]
Length = 738
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ +DLV
Sbjct: 296 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKPRYEQVDLV 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 353 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 413 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 473 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 533 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 TL 593
>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
Length = 652
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 180/297 (60%), Gaps = 11/297 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR--QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + R Q++LFSAT+P WVK +S ++L IDLVGN+ K
Sbjct: 227 MLRMGFVEDVELILGKVEDVRKVQTLLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMK 286
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + + + ++ D+I+ Y GG+TI+FT+ + A+E++ L + AL
Sbjct: 287 ASTNVRHIVLPCSTAAMPQVIPDVISCYGSGGRTIIFTEKRESANELAGLLP---GARAL 343
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q +RE TL+GFR GKF LVAT+VAARGLDI +V LII E PND E ++HRSGR
Sbjct: 344 HGEIQQSKREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGR 403
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R + ++R+ G KFE ++ P ED+ +++ T+ V
Sbjct: 404 TGRAGNSGVAVMLY-DPRRSNISKIQRESGVKFEHITAPRAEDIAKAAGVGAAETITQVS 462
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ L+ G A LA ALA+ +G++ SRSL+ VTL L
Sbjct: 463 DSVIPAFKSAAENLLSTSGLSAVELLAKALAKATGYTE-IKSRSLLTSMDNHVTLLL 518
>gi|432106714|gb|ELK32366.1| ATP-dependent RNA helicase DDX50 [Myotis davidii]
Length = 721
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 294 MLDLGFADQVEDIIHESYKTDAEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 350
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 351 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 410
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 411 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 470
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 471 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 530
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 531 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 589
Query: 290 QL 291
L
Sbjct: 590 TL 591
>gi|339896857|ref|XP_001462984.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
Length = 678
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 14/306 (4%)
Query: 1 MLAVGFEEDVELILENLP----------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF++D+EL+L + P Q++LFSAT+P WV S D ID+
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEF-IDM 302
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 109
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+ T
Sbjct: 303 VGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNT 362
Query: 110 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 363 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L V + + F A L+++ + LA+ALA +SG++ ++R LI G+VT
Sbjct: 482 AEDLARVERRATDLFMDQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYVT 541
Query: 289 LQLTRD 294
+Q+T D
Sbjct: 542 VQMTSD 547
>gi|398010006|ref|XP_003858201.1| nucleolar RNA helicase II, putative [Leishmania donovani]
gi|322496407|emb|CBZ31477.1| nucleolar RNA helicase II, putative [Leishmania donovani]
Length = 678
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 182/306 (59%), Gaps = 14/306 (4%)
Query: 1 MLAVGFEEDVELILENLP----------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF++D+EL+L + P Q++LFSAT+P WV S D ID+
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEF-IDM 302
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 109
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+ T
Sbjct: 303 VGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNT 362
Query: 110 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 363 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L V + + F A L+++ + LA+ALA +SG++ ++R LI G+VT
Sbjct: 482 AEDLARVERRATDLFMDQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYVT 541
Query: 289 LQLTRD 294
+Q+T D
Sbjct: 542 VQMTSD 547
>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
Length = 663
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 198/342 (57%), Gaps = 12/342 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR--QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF E VE IL + Q++LFSATMPSWVK+++ ++L N +DLVG++ K
Sbjct: 241 MLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMK 300
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K + +++ +++D+I VY GG+ IVFT+TK DA E++ +L + +A L
Sbjct: 301 ASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASELAGSLGTNVA-RPL 359
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY-ELPNDPETFVHRSG 176
HGDI Q QRE TL GFR KF VLVATDVAARGLDI +V LII E P D ET++HRSG
Sbjct: 360 HGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCEPPKDVETYIHRSG 419
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G A++MF + + +E G KFE ++PP + + S+ + ++ V
Sbjct: 420 RTGRAGNTGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAKESSFTAIKAVSAV 479
Query: 237 HPESVEFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293
V FF A++L+ + + LA ALA+++G + +H+ L
Sbjct: 480 SDSVVPFFKEAAEQLVSDCKRPAVELLAKALAKIAGCTEVKRRSLQTSHDDATTLLFEVS 539
Query: 294 DSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
S G++ ++ GFLS+ + I ++++ AD + +
Sbjct: 540 KPIHSVGYI-FNALRGFLSE---ECSSSIRRMNLTADGKAAV 577
>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
Length = 626
Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/342 (38%), Positives = 198/342 (57%), Gaps = 12/342 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR--QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF E VE IL + Q++LFSATMPSWVK+++ ++L N +DLVG++ K
Sbjct: 204 MLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPSWVKEIATRFLKPNKKTVDLVGDEKMK 263
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K + +++ +++D+I VY GG+ IVFT+TK DA E++ +L + +A L
Sbjct: 264 ASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRVIVFTETKNDASELAGSLGTNVA-RPL 322
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY-ELPNDPETFVHRSG 176
HGDI Q QRE TL GFR KF VLVATDVAARGLDI +V LII E P D ET++HRSG
Sbjct: 323 HGDIPQAQREHTLAGFRSAKFLVLVATDVAARGLDINDVQLIIQQCEPPKDVETYIHRSG 382
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G A++MF + + +E G KFE ++PP + + S+ + ++ V
Sbjct: 383 RTGRAGNTGIAVMMFDRKKEYMIPMIEAKAGFKFEKITPPQPSTIAKESSFTAIKAVSAV 442
Query: 237 HPESVEFFTPTAQRLIEE---KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293
V FF A++L+ + + LA ALA+++G + +H+ L
Sbjct: 443 SDSVVPFFKEAAEQLVSDCKRPAMELLAKALAKIAGCTEVKRRSLQTSHDDATTLLFEVS 502
Query: 294 DSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
S G++ ++ GFLS+ + I ++++ AD + +
Sbjct: 503 KPIHSVGYI-FNALRGFLSE---ECSSSIRRMNLTADGKAAV 540
>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 657
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 180/301 (59%), Gaps = 8/301 (2%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVE IL + P K Q++LFSAT+P+WV++++RK+L +DLVG++ K
Sbjct: 243 MLNMGFVDDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMK 302
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K + + + ++ D+I Y GG+ IVFT+TK DA E++ L S A AL
Sbjct: 303 ASNNVKHLLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVLKSGTA-RAL 361
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q+QRE TL GFR KF+VLVATDVAARGLDI +V L+I E P D ET++HRSGR
Sbjct: 362 HGDIPQNQREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGR 421
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G ++L + + + +ER G KFE ++ P D+ ++S + V
Sbjct: 422 TGRAGNTGISVLFYDRKKEYMIPQIERKAGFKFERIAAPQPADIAKASGNTATDGVLAVS 481
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ F A+ L++ G D LA A+A++SG + RSL+ TL L +
Sbjct: 482 DTVIPLFRQAAEDLVKSSGLPVLDVLAKAIAKISGQTE-LKRRSLLTSHDDATTLMLKAN 540
Query: 295 S 295
+
Sbjct: 541 T 541
>gi|390333037|ref|XP_786504.3| PREDICTED: nucleolar RNA helicase 2-like [Strongylocentrotus
purpuratus]
Length = 751
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 176/311 (56%), Gaps = 14/311 (4%)
Query: 1 MLAVGFEEDVELIL------------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN- 47
ML +GF E VE IL E P Q++LFSAT+P WV + + KY+ L
Sbjct: 272 MLDMGFAESVEEILGAAYKTGQPGDGEEAPNNPQTLLFSATVPPWVYQTAVKYMRKDLKK 331
Query: 48 IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSL 106
+DLVG K A ++ AI+ + + ++SD+I VY G+ +VF +TKRDA+E+++
Sbjct: 332 VDLVGRDRMKTATTVQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFCETKRDANELAM 391
Query: 107 ALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166
+ ++ +HGDI Q QRE TL GFR+GKF LV TDVAARGLDIP VDL+I P
Sbjct: 392 SSDVKQETQVMHGDIPQTQREVTLKGFREGKFQCLVTTDVAARGLDIPEVDLVIQCNPPR 451
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
D ++++HRSGRTGRAG+ G + + + R ++ +E G KF+ VS P D+++SS
Sbjct: 452 DVDSYIHRSGRTGRAGRNGVCVCFYKRQEERDLQKVEYKAGIKFKRVSAPQPSDIIKSSV 511
Query: 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGW 286
+ V L V PE V F A+ +I EKG A AA S +RSL+ E+G
Sbjct: 512 KDVTDLLGAVQPEMVAMFKSAAEAIIAEKGAVAALAAALAHITGSTAMKTRSLLTAEEGK 571
Query: 287 VTLQLTRDSAF 297
T L S
Sbjct: 572 TTFLLETQSQL 582
>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 185/322 (57%), Gaps = 15/322 (4%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLD---GSRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G + ++ S++ +V +E++ G KFE ++ P +++ S + + V
Sbjct: 437 TGRAGNTGVPVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L
Sbjct: 496 DSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTE-IKKRSLLTSMENYVTLHLEA- 553
Query: 295 SAFSRGFMSARSVMGFLSDVYP 316
+ S V G L V P
Sbjct: 554 ---GKPIYSPSFVYGLLRRVLP 572
>gi|401414811|ref|XP_003871902.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 684
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/306 (38%), Positives = 180/306 (58%), Gaps = 14/306 (4%)
Query: 1 MLAVGFEEDVELILENLP----------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF++D+EL+L + P Q++LFSAT+P WV S D ID+
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSVGAEKPVHQTLLFSATVPEWVHTCSFIAKDKEF-IDM 302
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 109
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+ T
Sbjct: 303 VGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNT 362
Query: 110 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 363 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDID 421
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L V + F A L+++ + LA+ALA +SG++ ++R LI G+VT
Sbjct: 482 AEDLARVERRATNLFMDQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYVT 541
Query: 289 LQLTRD 294
+Q+T D
Sbjct: 542 VQMTSD 547
>gi|449667537|ref|XP_002167666.2| PREDICTED: nucleolar RNA helicase 2-like [Hydra magnipapillata]
Length = 543
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 15/304 (4%)
Query: 1 MLAVGFEEDVELIL------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGN 53
M+ +GF+E +E IL +N P Q++LFSAT+P+W++K S KYL L DL+G
Sbjct: 117 MMDMGFQESMEEILSYAYTEDNKP---QTLLFSATVPAWLQKNSEKYLTKNLKKFDLIGR 173
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSII 112
K A ++ AI T + + + D+I Y+ K GKTI+FT TK++A+E LAL S+I
Sbjct: 174 DKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIFTSTKQEANE--LALNSVI 231
Query: 113 A--SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
S+ LHGDI Q QRE TL FR GKF L+ATDVAARGLDIP VDL+I E P D ++
Sbjct: 232 NMDSQVLHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPKDVDS 291
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HR+GRTGRAG++G I+ + Q V ++E G F + P +D++ +SAE V
Sbjct: 292 YIHRAGRTGRAGRKGVCIIFYKPGQEYGVAAVEHKAGISFTRIGAPQQKDLIAASAEDAV 351
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290
+L+ V + + +F A+ LIE++G + AA + +RS++ + G+ T
Sbjct: 352 RSLDEVKEDVISYFLDCARDLIEKRGAEKALAAALAYISGTTEIVNRSMLTSQPGYTTYL 411
Query: 291 LTRD 294
+ ++
Sbjct: 412 MKQN 415
>gi|449530205|ref|XP_004172086.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cucumis
sativus]
Length = 696
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 178/297 (59%), Gaps = 10/297 (3%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVE IL + K Q++LFSAT+P WVK ++ ++L + +DLVGN+ K
Sbjct: 269 MLNMGFVDDVEFILGKVADVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMK 328
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
++ ++ I + T + ++ D+I Y+ GG+TI+FT+TK A E++ L + L
Sbjct: 329 ASKDVRHIVIPCSDTERSRLIPDIIRCYSSGGRTIIFTETKESASELAGLLP---GARPL 385
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QR T++GFR GKF +LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 386 HGDIQQSQRSVTISGFRSGKFLILVATNVAARGLDINDVQLIIQCEAPKDIEAYIHRSGR 445
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ + + +ERD G KFE +S P D+ S+ ++ V
Sbjct: 446 TGRAGNTGVAVTLYDPRKSGRIARIERDSGVKFEHLSAPQPIDIARSAGASAAESVTQVS 505
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ ++ A LA ALA+LSG++ SRSL+ + +VTL L
Sbjct: 506 DSVIPPFKSAAEEMVNSSTLSAVELLAKALAKLSGYTE-IKSRSLLTSMENYVTLIL 561
>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
SAW760]
Length = 689
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 197/345 (57%), Gaps = 14/345 (4%)
Query: 1 MLAVGFEEDVELILE----NLPPKR--QSMLFSATMPSWVKKLSRKYL-DNPLNIDL-VG 52
ML +GF+E+V I++ ++P + Q++LFSATMP+WVK++S KYL D+ ID+ VG
Sbjct: 224 MLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVG 283
Query: 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 112
N ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+ I
Sbjct: 284 NT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIF 341
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D +V
Sbjct: 342 ECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYV 401
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 402 HRAGRTARAGKEGTTITLFTRKELPQLQLIENRIKIHFQRIGTPQKAQIAEVTCGNLPEE 461
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDA-LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ V + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 462 IKEVPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL-F 520
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCID 336
+ GF + ++G D P+ D++G++++ D V D
Sbjct: 521 METKGTTTGFSGTKFLLGKTLD--PSEIDKLGEVYVYKDHFVFFD 563
>gi|357444227|ref|XP_003592391.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355481439|gb|AES62642.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 641
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 180/300 (60%), Gaps = 11/300 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEK 57
ML +GF EDVELIL + + Q++LFSAT+P WVK +++++L ++ DLVGN K
Sbjct: 223 MLRMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNTKMK 282
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ Y + T ++ ++ D+I Y+ G+TI+FT+TK A +++ L + AL
Sbjct: 283 ASTSVRHYILPCTGAARSQLIPDIIRCYSSEGRTIIFTETKESASQLAELLP---GARAL 339
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 340 HGDIQQAQREVTLSGFRYGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 399
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R + +ER+ G KFE +S P D+ ++ + + V
Sbjct: 400 TGRAGNTGVAVMLY-DPRRSNIPKIERESGVKFEHISAPQANDIAKAVGREAAEMIMQVS 458
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ F A+ L+ G D A ALA+ G++ RSL++ + +VTL L +
Sbjct: 459 DSVIPAFKSAAEELLNNSGLSVVDLFAKALAKAVGYTE-IKKRSLLSSMENYVTLLLENE 517
>gi|154332025|ref|XP_001561829.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 181/306 (59%), Gaps = 14/306 (4%)
Query: 1 MLAVGFEEDVELILENLPPK----------RQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF++D+EL+L + + Q++LFSAT+P WV S D ID+
Sbjct: 244 MLDIGFKDDIELLLSQVAEQNGSTSAEKTVHQTLLFSATVPEWVHTCSFIAKDKEF-IDM 302
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT 109
VG + + A IK Y + ++L+DLI VY+ G+T+VFT TK+D ++S+ T
Sbjct: 303 VGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNT 362
Query: 110 SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 363 KL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDID 421
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
F+HR+GRTGRAG++G +L++ + V +ER KF+ + P E++L++ A
Sbjct: 422 AFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDA 481
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L V + F A L+++ + LA+ALA +SG++ ++R LI G+VT
Sbjct: 482 AEDLARVERRATNLFMEQAAELLKDADPVEILASALAVMSGYTSNITTRGLITGTPGYVT 541
Query: 289 LQLTRD 294
+Q+T D
Sbjct: 542 VQMTSD 547
>gi|407042825|gb|EKE41557.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 667
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 14/345 (4%)
Query: 1 MLAVGFEEDVELILE----NLPPKR--QSMLFSATMPSWVKKLSRKYL-DNPLNIDL-VG 52
ML +GF+E+V I++ ++P + Q++LFSATMP+WVK++S KYL D+ ID+ VG
Sbjct: 224 MLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVG 283
Query: 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 112
N ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+ I
Sbjct: 284 NT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIF 341
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D +V
Sbjct: 342 ECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYV 401
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 402 HRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVTCGNLPEE 461
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDA-LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ + + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 462 IKEIPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL-F 520
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCID 336
+ GF + ++G + P+ D++G++++ D V D
Sbjct: 521 METKGTTTGFSGTKFLLG--KTLEPSEIDKLGEVYVYKDHFVFFD 563
>gi|387018184|gb|AFJ51210.1| Nucleolar RNA helicase 2-like [Crotalus adamanteus]
Length = 701
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 192/299 (64%), Gaps = 9/299 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR-----QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
ML +GF E VE IL N K Q++LFSAT P WV +++KY+ + DL+G +
Sbjct: 288 MLDMGFAEQVEEILVNSYKKDSEDNPQTLLFSATCPQWVYNVAKKYMKSKYEQFDLIGKK 347
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D+I VY+ G+TI+F +TK++A E++L +
Sbjct: 348 TKKTATTVEHLAIECHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEATELALNASIKQD 407
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 408 AQSLHGDIPQKQREVTLKGFRNGAFEVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIH 467
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + + ++ +E+ G F+ V P D++++S++ + +L
Sbjct: 468 RSGRTGRAGRTGLCICFYQRREDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDAIRSL 527
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ V P ++++F +A++LIEEKG +ALAAALA +SG + RSL+N + G+VT+ L
Sbjct: 528 DSVPPSAIDYFRQSAEQLIEEKGAVEALAAALAHISGAT-SIEQRSLLNSDVGYVTMIL 585
>gi|449703528|gb|EMD43965.1| ATP-dependent RNA helicase, putative [Entamoeba histolytica KU27]
Length = 695
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 14/345 (4%)
Query: 1 MLAVGFEEDVELILE----NLPPKR--QSMLFSATMPSWVKKLSRKYL-DNPLNIDL-VG 52
ML +GF+E+V I++ ++P + Q++LFSATMP+WVK++S KYL D+ ID+ VG
Sbjct: 224 MLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVG 283
Query: 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 112
N ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+ I
Sbjct: 284 NT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIF 341
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D +V
Sbjct: 342 ECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYV 401
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 402 HRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVTCGNLPEE 461
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDA-LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ + + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 462 IKEIPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL-F 520
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCID 336
+ GF + ++G + P+ D++G++++ D V D
Sbjct: 521 METKGTTTGFSGTKFLLG--KTLEPSEIDKLGEVYVYKDHFVFFD 563
>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 723
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 197/345 (57%), Gaps = 14/345 (4%)
Query: 1 MLAVGFEEDVELILE----NLPPKR--QSMLFSATMPSWVKKLSRKYL-DNPLNIDL-VG 52
ML +GF+E+V I++ ++P + Q++LFSATMP+WVK++S KYL D+ ID+ VG
Sbjct: 224 MLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVG 283
Query: 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII 112
N ++ + K A SK ++DLI VY + G+TIVF TK + + ++A+ I
Sbjct: 284 NT--QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPIF 341
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q QRE+TLNGFR+ KF VLVATDVAARGLDI VDLII +P D +V
Sbjct: 342 ECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVPKDIPQYV 401
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRT RAGKEGT I +FT + ++ +E + F+ + P + E + +
Sbjct: 402 HRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIAEVTCGNLPEE 461
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDA-LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ + + E F +++L+E + L +A LS S S RSL+ E G TL
Sbjct: 462 IKEIPDATAELFRDISKKLLETGDAETVLCKVIASLSTVSNDDSDRSLLQGEPGVKTL-F 520
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCID 336
+ GF + ++G + P+ D++G++++ D V D
Sbjct: 521 METKGTTTGFSGTKFLLG--KTLEPSEIDKLGEVYVYKDHFVFFD 563
>gi|356575902|ref|XP_003556075.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 693
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 185/298 (62%), Gaps = 13/298 (4%)
Query: 1 MLAVGFEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDE 56
ML +GF EDVE+IL EN+ K Q++LFSAT+P WVK+++ ++L + DLVGN
Sbjct: 277 MLRMGFVEDVEMILGKVENVN-KVQTLLFSATLPDWVKQIAARFLKPDKKTADLVGNTKM 335
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 116
K + ++ + T++++ ++ D+I Y+ GG+TIVFT+TK A +++ LT ++A
Sbjct: 336 KASINVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKESASQLAGILT---GAKA 392
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI Q RE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSG
Sbjct: 393 LHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 452
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G A++++ +R + +ER+ G KFE VS P +D+ ++ + + + V
Sbjct: 453 RTGRAGNTGVAVMLY-DPKRSNISRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQV 511
Query: 237 HPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
V F A+ L+ G + LA ALA+ G++ RSL+ + +VTL L
Sbjct: 512 SDSVVPAFKSAAEDLLNNSGLPVIELLAKALAKAVGYTE-VKQRSLLTSMENYVTLLL 568
>gi|334349455|ref|XP_001380649.2| PREDICTED: nucleolar RNA helicase 2-like [Monodelphis domestica]
Length = 887
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 188/296 (63%), Gaps = 15/296 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 497 MLDMGFAEQVEEILTVAYKKDSEDNP---QTLLFSATCPHWVYDVAKKYMKSTYEQVDLI 553
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI+ + + ++ D+I VY+ G+TI+F +TK++A E+SL +
Sbjct: 554 GKKTQKAAVTVEHLAINCHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESI 613
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR GKF VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 614 KQDAQSLHGDIPQKQREITLQGFRNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 673
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + ++ + +ER G F+ V P +++++S++ +
Sbjct: 674 YIHRSGRTGRAGRTGICICFYQKKEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAI 733
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQG 285
L+ V P ++ F TAQ+LI+EKG +ALAAALA +SG + RSLIN + G
Sbjct: 734 RFLDSVPPAAINNFRQTAQKLIDEKGAVEALAAALAHISGATT-VEQRSLINSDVG 788
>gi|39644658|gb|AAH18637.2| DDX50 protein, partial [Homo sapiens]
Length = 423
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 177/273 (64%), Gaps = 4/273 (1%)
Query: 22 QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80
Q++LFSAT P WV K+++KY+ + +DLVG +K A ++ AI + + ++ D
Sbjct: 7 QTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGD 66
Query: 81 LITVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 139
++ VY+ G+ I+F +TK++ E+++ ++ LHGDI+Q QRE TL GFR+G F
Sbjct: 67 VLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFK 126
Query: 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199
VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +
Sbjct: 127 VLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQL 186
Query: 200 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT-D 258
R +E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG D
Sbjct: 187 RYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVD 246
Query: 259 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
ALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 247 ALAAALAHISGAS-SFEPRSLITSDKGFVTMTL 278
>gi|149038672|gb|EDL92961.1| rCG22084, isoform CRA_a [Rattus norvegicus]
gi|149038673|gb|EDL92962.1| rCG22084, isoform CRA_a [Rattus norvegicus]
Length = 398
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 185/296 (62%), Gaps = 15/296 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 1 MLDLGFAEQVEDIIHESYKSDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 57
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 58 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 117
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 118 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 177
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 178 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 237
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQG 285
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 238 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLITSDKG 292
>gi|345798963|ref|XP_851746.2| PREDICTED: nucleolar RNA helicase 2 [Canis lupus familiaris]
Length = 785
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 346 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKSTYEQVDLI 402
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 403 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSI 462
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 463 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 522
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 523 YIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 583 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVTM 641
Query: 290 QL 291
L
Sbjct: 642 IL 643
>gi|449451928|ref|XP_004143712.1| PREDICTED: uncharacterized protein LOC101209696 [Cucumis sativus]
Length = 1247
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/297 (40%), Positives = 178/297 (59%), Gaps = 10/297 (3%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVE IL + K Q++LFSAT+P WVK ++ ++L + +DLVGN+ K
Sbjct: 820 MLNMGFVDDVEFILGKVADVNKVQTLLFSATLPDWVKNITSRFLKASKKTVDLVGNEKMK 879
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
++ ++ I + T + ++ D+I Y+ GG+TI+FT+TK A E++ L + L
Sbjct: 880 ASKDVRHIVIPCSDTERSRLIPDIIRCYSSGGRTIIFTETKESASELAGLLP---GARPL 936
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QR T++GFR GKF +LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 937 HGDIQQSQRSVTISGFRSGKFLILVATNVAARGLDINDVQLIIQCEAPKDIEAYIHRSGR 996
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ + + +ERD G KFE +S P D+ S+ ++ V
Sbjct: 997 TGRAGNTGVAVTLYDPRKSGRIARIERDSGVKFEHLSAPQPIDIARSAGASAAESVTQVS 1056
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F A+ ++ A LA ALA+LSG++ SRSL+ + +VTL L
Sbjct: 1057 DSVIPPFKSAAEEMVNSSTLSAVELLAKALAKLSGYTE-IKSRSLLTSMENYVTLIL 1112
>gi|194205947|ref|XP_001917975.1| PREDICTED: nucleolar RNA helicase 2 [Equus caballus]
Length = 785
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 192/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 346 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKSTYEQVDLI 402
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ +TI+F +TK++A E+S +++
Sbjct: 403 GKKTQKTAMTVEHLAIKCHWTQRAAVIGDVIRVYSGYQRRTIIFCETKKEAQELSQSVSI 462
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+ +++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 463 KLDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 522
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 523 YIHRSGRTGRAGRTGICICFYQHKEEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 583 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSDAGFVTM 641
Query: 290 QL 291
L
Sbjct: 642 IL 643
>gi|148700136|gb|EDL32083.1| mCG141508, isoform CRA_b [Mus musculus]
Length = 398
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 185/296 (62%), Gaps = 15/296 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 1 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 57
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 58 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 117
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 118 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 177
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 178 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 237
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQG 285
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 238 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLITSDKG 292
>gi|417404458|gb|JAA48981.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 765
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 346 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 402
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 403 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNASI 462
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 463 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 522
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 523 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 583 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSESGFVTM 641
Query: 290 QL 291
L
Sbjct: 642 IL 643
>gi|417404608|gb|JAA49048.1| Putative nucleolar rna helicase 2 [Desmodus rotundus]
Length = 785
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 346 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 402
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 403 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNASI 462
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 463 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 522
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 523 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 583 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSESGFVTM 641
Query: 290 QL 291
L
Sbjct: 642 IL 643
>gi|21410145|gb|AAH30895.1| Ddx21 protein, partial [Mus musculus]
Length = 689
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 254 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 310
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 311 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 370
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 371 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 430
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 431 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 490
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 491 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 549
Query: 290 QL 291
L
Sbjct: 550 IL 551
>gi|410697698|gb|AFV76766.1| DNA/RNA helicase, superfamily II [Thermus oshimai JL-2]
Length = 508
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 201/338 (59%), Gaps = 22/338 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE +L P +RQ++LFSAT+PSW +KLS +Y+ P+ I++V E
Sbjct: 156 MLSMGFEEEVERLLSATPKERQTLLFSATLPSWARKLSERYMRAPVLINVVRE------E 209
Query: 61 GIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
G+ + A + R +LSDL+ V A + IVFT TKR+ +EV+ L + A+H
Sbjct: 210 GVTYQEEAILAPTDRLGLLSDLLFVKAP-KRAIVFTSTKRETEEVAAGLLQAGHPARAIH 268
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ RER L FR+G+ VLVATDVAARGLDIP VDL++HY LP PE + HRSGRT
Sbjct: 269 GDLSQSDRERVLKAFREGEVRVLVATDVAARGLDIPEVDLVVHYRLPQSPEAYQHRSGRT 328
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAG+ G + + ++R + +LE+ VG F V+PP E+VLE+ + ++A L GV
Sbjct: 329 GRAGRGGEVVAFYGPREKRELMALEKAVGRTFRRVNPPTPEEVLEAKWQHLLARLAGVPE 388
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFS 298
+ + AQRL E + +AA +A L G + P +SL+ E+GW T + T
Sbjct: 389 RDYKLYLDFAQRLFAEGRVEVVAALMALLLGGA--PKEKSLLTGEEGWRTFKAT------ 440
Query: 299 RGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCID 336
AR + L + E+GKI + A+D +D
Sbjct: 441 ----GARLTLPRLVALLKERGLEVGKI-LEAEDGFYVD 473
>gi|351702495|gb|EHB05414.1| Nucleolar RNA helicase 2 [Heterocephalus glaber]
Length = 777
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT PSWV +++KY+ + +DL+
Sbjct: 338 MLDMGFAEQVEDILCVAYKKDSEDNP---QTLLFSATCPSWVFNVAKKYMKSIYEQVDLI 394
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TIVF +TK++A E+S +
Sbjct: 395 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNASI 454
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F V+VAT+VAARGLDIP VDL++ P D E+
Sbjct: 455 KQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVVQSCPPKDVES 514
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 515 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDAI 574
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 575 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSEAGFVTM 633
Query: 290 QL 291
L
Sbjct: 634 IL 635
>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
Length = 765
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 317 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKSTYEQVDLI 373
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 374 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSI 433
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 434 KQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 493
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 494 YIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 553
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P +V F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 554 RLLDSVPPTAVSHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVTM 612
Query: 290 QL 291
L
Sbjct: 613 IL 614
>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
Length = 794
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 346 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKSTYEQVDLI 402
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 403 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSI 462
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 463 KQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 522
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 523 YIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 582
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P +V F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 583 RLLDSVPPTAVSHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSDAGFVTM 641
Query: 290 QL 291
L
Sbjct: 642 IL 643
>gi|417412883|gb|JAA52800.1| Putative nucleolar rna helicase 2, partial [Desmodus rotundus]
Length = 840
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 401 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 457
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 458 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNASI 517
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 518 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 577
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 578 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 637
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 638 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSESGFVTM 696
Query: 290 QL 291
L
Sbjct: 697 IL 698
>gi|431904163|gb|ELK09585.1| Nucleolar RNA helicase 2 [Pteropus alecto]
Length = 784
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 345 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 401
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 402 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSI 461
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 462 KQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 521
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 522 YIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 581
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 582 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSDAGFVTM 640
Query: 290 QL 291
L
Sbjct: 641 IL 642
>gi|440895815|gb|ELR47909.1| Nucleolar RNA helicase 2, partial [Bos grunniens mutus]
Length = 680
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 345 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPYWVFNVAKKYMKSTYEQVDLI 401
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 402 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAV 461
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 462 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 521
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 522 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDAI 581
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 582 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSEAGFVTM 640
Query: 290 QL 291
L
Sbjct: 641 IL 642
>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
Length = 638
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 196 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 252
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 253 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 312
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 313 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 372
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 373 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 432
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 433 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSQAGFVTM 491
Query: 290 QL 291
L
Sbjct: 492 IL 493
>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
Length = 624
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 185/296 (62%), Gaps = 15/296 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 227 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 283
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 284 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 343
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 344 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 403
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 404 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 463
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQG 285
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 464 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKG 518
>gi|432106715|gb|ELK32367.1| Nucleolar RNA helicase 2 [Myotis davidii]
Length = 799
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ +DL+
Sbjct: 361 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKPTYEQVDLI 417
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 418 GKRTQKAAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNTSM 477
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F V+VAT+VAARGLDIP VDL+I P D E+
Sbjct: 478 KQDAQSLHGDIPQKQREITLKGFRNGDFGVMVATNVAARGLDIPEVDLVIQCSPPKDVES 537
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 538 YIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 597
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 598 RFLDSVPPTAINHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSEAGFVTM 656
Query: 290 QL 291
L
Sbjct: 657 IL 658
>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
DSM 14884]
Length = 517
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 195/328 (59%), Gaps = 17/328 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEEDVE +L RQ+++FSATMPSW ++L+ ++L +P +LV +DE +
Sbjct: 156 MLSMGFEEDVEALLAAAVSARQTLVFSATMPSWARRLAERHLKDPFVANLV--KDEAVT- 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHG 119
+ AI ++ +LSD++ Y G+ IVFT+TK + D ++ AL A+EA+HG
Sbjct: 213 -YRELAIEAPTATRIAVLSDVLHAYG-AGRAIVFTRTKAETDALATALAGRRHAAEAVHG 270
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ RER + FR+G VLVATDVAARGLD+P V+L++HY LP E + HRSGRTG
Sbjct: 271 DLSQAARERVVARFRKGLVRVLVATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTG 330
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GT +L++ +RRTV LER + +FE ++PP +V + ++
Sbjct: 331 RAGRTGTVVLLYGPRERRTVADLERALRRRFERLAPPTPGEVQRAQLAALLQRAAAQPEA 390
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299
+ A+ + T++LA LA L G + P RSL+ E+GWVTL+L R
Sbjct: 391 DRAVWREVARDWVARGDTESLAGLLAMLLGGA--PPQRSLLTGEEGWVTLELK-----GR 443
Query: 300 GFMSARSVMGFLSDVYPTAADEIGKIHI 327
+AR V+G L A E+G++ +
Sbjct: 444 NLTTAR-VVGALRH---AGAGEVGRVSV 467
>gi|356535937|ref|XP_003536498.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
Length = 697
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 184/298 (61%), Gaps = 13/298 (4%)
Query: 1 MLAVGFEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDE 56
ML +GF EDVE+IL EN+ K Q++LFSAT+P WVK+++ K+L + DLVGN
Sbjct: 282 MLRMGFVEDVEMILGKVENVN-KVQTLLFSATLPDWVKQIALKFLKPDKKTADLVGNTKM 340
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 116
K + ++ + T++++ ++ D+I Y+ GG+TIVFT+TK A +++ L ++A
Sbjct: 341 KASTNVRHIVLPCTSSARAQLIPDIIRCYSSGGRTIVFTETKECASQLAGILN---GAKA 397
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI Q RE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSG
Sbjct: 398 LHGDIQQSTREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSG 457
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G A++++ +R + +ER+ G KFE VS P +D+ ++ + + + V
Sbjct: 458 RTGRAGNTGVAVMLY-DPKRSNIPRIERESGVKFEHVSAPQPDDIAKAVSGEAAEMIIQV 516
Query: 237 HPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
V F A+ L+ G + LA ALA+ G++ RSL+ + +VTL L
Sbjct: 517 SDSVVPAFKSAAEELLNSSGLPVIELLAKALAKAVGYTD-VKQRSLLTSMENYVTLVL 573
>gi|410975245|ref|XP_003994044.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Felis catus]
gi|410975247|ref|XP_003994045.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Felis catus]
Length = 712
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 273 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMRSTYEQVDLI 329
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S ++
Sbjct: 330 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSI 389
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 390 KQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 449
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 450 YIHRSGRTGRAGRTGICICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 509
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 510 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVTM 568
Query: 290 QL 291
L
Sbjct: 569 IL 570
>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
musculus]
Length = 805
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 370 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 426
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 427 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 486
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 487 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 546
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 547 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 606
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 607 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 665
Query: 290 QL 291
L
Sbjct: 666 IL 667
>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
Length = 689
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 185/296 (62%), Gaps = 15/296 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 292 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQG 285
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 529 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKG 583
>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
gi|296472163|tpg|DAA14278.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
Length = 784
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 345 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPYWVFNVAKKYMKSTYEQVDLI 401
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 402 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAV 461
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 462 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 521
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 522 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDAI 581
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 582 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSEAGFVTM 640
Query: 290 QL 291
L
Sbjct: 641 IL 642
>gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
Length = 851
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QL 291
L
Sbjct: 712 IL 713
>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
Length = 689
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 185/296 (62%), Gaps = 15/296 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 292 MLDLGFAEQVEDIIHESYKSDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 348
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 349 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 408
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 409 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 468
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + +
Sbjct: 469 YIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 528
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQG 285
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G
Sbjct: 529 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKG 583
>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
Length = 851
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QL 291
L
Sbjct: 712 IL 713
>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
gi|341940509|sp|Q9JIK5.3|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
musculus]
Length = 851
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QL 291
L
Sbjct: 712 IL 713
>gi|113931550|ref|NP_001039224.1| nucleolar RNA helicase 2 [Xenopus (Silurana) tropicalis]
gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
[Xenopus (Silurana) tropicalis]
Length = 755
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 179/302 (59%), Gaps = 14/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
M +GF E VE IL E P Q++LFSAT P W+ +++KY+ IDLV
Sbjct: 337 MFDMGFSEQVEEILSVRYKPDPEENP---QTLLFSATCPDWMYNVAKKYMKKQFEKIDLV 393
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G++ +K A ++ AI T + K +L D++ VY+ GK+I+F +K +A E++ S
Sbjct: 394 GHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGS 453
Query: 111 IIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S + LHGD+ Q +RE L GFRQG F VLVAT+VAARGLDIP VDL++ Y P + +
Sbjct: 454 LKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEAD 513
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
+VHRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V +SS+
Sbjct: 514 AYVHRSGRTGRAGRTGICISLYEPRERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADA 573
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G+VT+
Sbjct: 574 IKSLDSVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNMEAGYVTI 633
Query: 290 QL 291
L
Sbjct: 634 TL 635
>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
Length = 688
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 182/309 (58%), Gaps = 11/309 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WV KLS ++L +DLVG++ K
Sbjct: 269 MLNMGFVDDVELILGKVEDVTKVQTLLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLK 328
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A E+S I S AL
Sbjct: 329 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASELS---GLIAGSRAL 385
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 386 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 445
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + + V
Sbjct: 446 TGRAGNTGVAVMLFDPRHKFNVNRIERESGVKFEHISAPQPTDVAQSAGSEAAEAIASVS 505
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLS---GFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A++L+ G A L+ G++ RSL++ + TL L T
Sbjct: 506 DSVIPVFREQAEQLLSSSGMSAADLLAKALAKAVGYTD-IKKRSLLSSMENHTTLLLQTG 564
Query: 294 DSAFSRGFM 302
S ++ GF+
Sbjct: 565 RSVYAPGFV 573
>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
Length = 832
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 397 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 453
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 454 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 513
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 514 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 573
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 574 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 633
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 634 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 692
Query: 290 QL 291
L
Sbjct: 693 IL 694
>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
Length = 758
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 179/302 (59%), Gaps = 14/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
M +GF E VE IL E P Q++LFSAT P W+ +++KY+ IDLV
Sbjct: 337 MFDMGFSEQVEEILSVRYKPDPEENP---QTLLFSATCPDWMYNVAKKYMKKQFEKIDLV 393
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G++ +K A ++ AI T + K +L D++ VY+ GK+I+F +K +A E++ S
Sbjct: 394 GHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGS 453
Query: 111 IIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S + LHGD+ Q +RE L GFRQG F VLVAT+VAARGLDIP VDL++ Y P + +
Sbjct: 454 LKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEAD 513
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
+VHRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V +SS+
Sbjct: 514 AYVHRSGRTGRAGRTGICISLYEPRERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADA 573
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G+VT+
Sbjct: 574 IKSLDSVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNMEAGYVTI 633
Query: 290 QL 291
L
Sbjct: 634 TL 635
>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
Length = 727
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 179/299 (59%), Gaps = 8/299 (2%)
Query: 1 MLAVGFEEDVELILE---NLPPKR--QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
M +GF E VE IL P+ Q++LFSAT P W+ +++KY+ IDL+G++
Sbjct: 305 MFDMGFSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHR 364
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI T + K +L DL+ VY+ GKTI+F +K +A ++ + S+
Sbjct: 365 SQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQ 424
Query: 114 S-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
S ++LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P + + +V
Sbjct: 425 SAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYV 484
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V +SS+ + +
Sbjct: 485 HRSGRTGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSADAIKS 544
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L+ V + +E F AQ LIE+KG AA + RSL+N E G VT+ L
Sbjct: 545 LDTVPADVIEHFKEYAQELIEQKGALTAIAAALAHISGATSIKQRSLLNMEAGCVTITL 603
>gi|344237686|gb|EGV93789.1| Nucleolar RNA helicase 2 [Cricetulus griseus]
Length = 729
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 296 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 352
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + + ++ D+I VY+ G+TI+F +TKR+A E+S
Sbjct: 353 GKKTQKAAITVEHLAIKCHWSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTCI 412
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 413 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 472
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + +E+ G KF+ + P +++++S++ +
Sbjct: 473 YIHRSGRTGRAGRTGVCICFYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDAI 532
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P +++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 533 RLLDSVPPTAIDHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 591
Query: 290 QL 291
L
Sbjct: 592 IL 593
>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
Length = 713
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 181/298 (60%), Gaps = 13/298 (4%)
Query: 1 MLAVGFEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDE 56
ML +GF EDVELIL EN+ K Q++LFSAT+P WVK ++ ++L + DLVGN
Sbjct: 293 MLRMGFVEDVELILGKVENVN-KVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKM 351
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 116
K + ++ + +A ++ ++ D+I Y+ GG+TI+FT+TK A +++ L + A
Sbjct: 352 KASTNVRHIVLPCSAPARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLP---GARA 408
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E+++HRSG
Sbjct: 409 LHGDIQQAQREVTLFGFRSGKFMTLVATNVAARGLDINDVQLIIQCEFPREVESYIHRSG 468
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G A ++ +R + +ER+ G KFE +S P +D+ ++ + + V
Sbjct: 469 RTGRAGNTGVAGTLY-DPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQV 527
Query: 237 HPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
+ F TA+ L++ G + LA ALA+ G++ RSL+ + +VTL L
Sbjct: 528 SDSVIPAFKETAEELLKSSGLTVVELLAKALAKAVGYTE-IKQRSLLTSMENYVTLLL 584
>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 744
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 191/342 (55%), Gaps = 14/342 (4%)
Query: 1 MLAVGFEEDVELIL-----ENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQ 54
ML GF+ED+E I + + Q++LFSATMPSWV ++RK+L ++ + IDLV N
Sbjct: 231 MLNFGFQEDIEKIFGFIKNDKGEERPQNLLFSATMPSWVHDIARKFLREDRVLIDLVKNL 290
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSII 112
K ++ + AI+ + + D+I Y G + I+F +TK +A+E+ L
Sbjct: 291 GNKTSQDVTHLAINCPYFQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKANIKQ 350
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q QRE T GFR+GKF LVAT+VAARGLDIP VDLI+ E P + + ++
Sbjct: 351 DVQVLHGDIPQKQREITFQGFREGKFKCLVATNVAARGLDIPEVDLIVQLEPPKELDAYI 410
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAGK+G I +T Q+ + +E+ K + V P D++ +S +
Sbjct: 411 HRSGRTGRAGKKGVCITFYTKKQQSLIERIEKKCHIKMQKVGAPQPADLIRASQNDIKKN 470
Query: 233 LNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L V+ + F + LI+E G +AL A+A +SGF+ RSL+ +G+VT +
Sbjct: 471 LMSVNRTVLGIFKEVSVDLIQEFGPEEALERAIAFISGFTEKMKQRSLLCCLEGYVTYIV 530
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDR 332
S F RG + G++ + +P D I + AD++
Sbjct: 531 RTPSEF-RGLG---YIWGWVKNNFPAECTDRIKGMKKFADNK 568
>gi|414590004|tpg|DAA40575.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 671
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 159/255 (62%), Gaps = 6/255 (2%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WV KLS ++L + +DLVGN+ K
Sbjct: 287 MLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLK 346
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S I S AL
Sbjct: 347 ASASVKHLALPCNKAARAQLIPDIIRCYSHGGRTIIFTETKDSASELS---GLIPGSRAL 403
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+ Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 404 HGDVVQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 463
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ + +V LER+ G KFE +S P DV +S+ + + V
Sbjct: 464 TGRAGNTGVAVMLYEPRYKYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVS 523
Query: 238 PESVEFFTPTAQRLI 252
+ F A++L+
Sbjct: 524 DSVIPVFRQQAEQLL 538
>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
gi|123780397|sp|Q3B8Q1.1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
Length = 782
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 340 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 396
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 397 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 456
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 457 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 516
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 517 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 576
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 577 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 635
Query: 290 QL 291
L
Sbjct: 636 IL 637
>gi|414886328|tpg|DAA62342.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 707
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 158/253 (62%), Gaps = 6/253 (2%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WV KLS ++L + +DLVGN+ K
Sbjct: 285 MLNMGFVDDVELILGKVEDATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLK 344
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S I S AL
Sbjct: 345 ASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GLIHGSRAL 401
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 402 HGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 461
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ + +V LER+ G KFE +S P DV +S+ + + V
Sbjct: 462 TGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVS 521
Query: 238 PESVEFFTPTAQR 250
+ F A++
Sbjct: 522 DSVIPIFRQQAEQ 534
>gi|414590005|tpg|DAA40576.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 704
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/255 (44%), Positives = 159/255 (62%), Gaps = 6/255 (2%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WV KLS ++L + +DLVGN+ K
Sbjct: 287 MLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLK 346
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S I S AL
Sbjct: 347 ASASVKHLALPCNKAARAQLIPDIIRCYSHGGRTIIFTETKDSASELS---GLIPGSRAL 403
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+ Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 404 HGDVVQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 463
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ + +V LER+ G KFE +S P DV +S+ + + V
Sbjct: 464 TGRAGNTGVAVMLYEPRYKYSVSRLERESGVKFEHISAPQPTDVAQSAGSEAADAIASVS 523
Query: 238 PESVEFFTPTAQRLI 252
+ F A++L+
Sbjct: 524 DSVIPVFRQQAEQLL 538
>gi|451172075|ref|NP_001263383.1| nucleolar RNA helicase 2 [Ovis aries]
Length = 783
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPYWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 461 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN E G+VT+
Sbjct: 581 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSEAGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|354475482|ref|XP_003499957.1| PREDICTED: nucleolar RNA helicase 2-like [Cricetulus griseus]
Length = 806
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 373 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 429
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + + ++ D+I VY+ G+TI+F +TKR+A E+S
Sbjct: 430 GKKTQKAAITVEHLAIKCHWSERAAVIGDVIRVYSGHQGRTIIFCETKREAQELSQNTCI 489
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 490 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 549
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + +E+ G KF+ + P +++++S++ +
Sbjct: 550 YIHRSGRTGRAGRTGVCICFYQHKDEYQLAQVEQKAGIKFKRIGVPSAAEIIKASSKDAI 609
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P +++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 610 RLLDSVPPTAIDHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 668
Query: 290 QL 291
L
Sbjct: 669 IL 670
>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
Length = 517
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 207/346 (59%), Gaps = 20/346 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE +L PP RQ++LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E
Sbjct: 163 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHG
Sbjct: 223 ----EAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTG
Sbjct: 278 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 338 RAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEK 397
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLT 292
+ A RL E + +AA LA L G + + RSL+ E+GW T L L
Sbjct: 398 DYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPRLSLP 455
Query: 293 RDSAFSRG-----FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
R A +G A + GF D+ P A E+ + + RV
Sbjct: 456 RLVALLKGQGLEVGKVAEAEGGFYVDLRPEARPEVAGLRLEPARRV 501
>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
Length = 715
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|379317177|ref|NP_001243839.1| nucleolar RNA helicase 2 isoform 2 [Homo sapiens]
gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
sapiens]
gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
Length = 715
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
Length = 715
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|402880640|ref|XP_003903906.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Papio anubis]
Length = 715
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
Length = 783
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|397489924|ref|XP_003815961.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan paniscus]
Length = 715
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|426364958|ref|XP_004049558.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Gorilla gorilla
gorilla]
Length = 715
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
DAL972]
Length = 632
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 177/302 (58%), Gaps = 13/302 (4%)
Query: 1 MLAVGFEEDVELILENLP---------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51
ML +GF+ED+EL+L+ + PK Q++LFSAT+P WV S N ID+V
Sbjct: 203 MLDIGFKEDIELLLQRVAEQNGSTPDEPKHQTLLFSATVPDWVHTCSF-ISKNKKFIDMV 261
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + A I+ Y ++L+DL+ VY+ + G+T++FT TK+D ++S+ T
Sbjct: 262 GQGAMRAANTIRFYRRKCGFAEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK 321
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 322 L-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDA 380
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
F+HR+GRTGRAG++G +L+ V +ER KFE + P E++L++ A
Sbjct: 381 FIHRAGRTGRAGRKGVCVLLHQPKDEYVVERIERHAKIKFEVLPAPTREEILKAVARDAA 440
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ V + F A L+++ T+ LA+A+A +SG++ + R LI+ +G T+
Sbjct: 441 EDMARVERSATNLFMDQAAELLKDADPTEILASAIAVMSGYTSSITKRGLISGARGSATV 500
Query: 290 QL 291
Q+
Sbjct: 501 QM 502
>gi|402880638|ref|XP_003903905.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Papio anubis]
Length = 783
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|395820929|ref|XP_003783808.1| PREDICTED: nucleolar RNA helicase 2 [Otolemur garnettii]
Length = 769
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ +DL+
Sbjct: 340 MLDMGFADQVEDILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKPTYEQVDLI 396
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 397 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTAI 456
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 457 KQDAQSLHGDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 516
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 517 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSPTEIIKASSKDAI 576
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 577 RLLDSVPPTAINHFKESAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDVGFVTM 635
Query: 290 QL 291
L
Sbjct: 636 IL 637
>gi|380817914|gb|AFE80831.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|383414353|gb|AFH30390.1| nucleolar RNA helicase 2 [Macaca mulatta]
gi|384943498|gb|AFI35354.1| nucleolar RNA helicase 2 [Macaca mulatta]
Length = 783
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
Length = 711
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/253 (44%), Positives = 158/253 (62%), Gaps = 6/253 (2%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WV KLS ++L + +DLVGN+ K
Sbjct: 286 MLNMGFVDDVELILGKVEDATKVQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLK 345
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S I S AL
Sbjct: 346 ASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GLIPGSRAL 402
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+ Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 403 HGDVVQAQREVILAGFRGGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 462
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ + +V LER+ G KFE +S P DV +S+ + ++ V
Sbjct: 463 TGRAGNTGVAVMLYEPRYKYSVNRLERESGVKFEHISAPQPTDVAQSAGSEAADAISSVS 522
Query: 238 PESVEFFTPTAQR 250
+ F A++
Sbjct: 523 DSVIPVFRQQAEQ 535
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 187/294 (63%), Gaps = 11/294 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE IL P +RQ++LFSAT+PSW +KL+ +Y+ +P+ I++V E
Sbjct: 156 MLSMGFEEEVEAILSATPKERQTLLFSATLPSWARKLAERYMKSPVVINVVRE------E 209
Query: 61 GIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
GI + A R ++LSD++ V A + IVFT+TK + +EV+ L + + A+H
Sbjct: 210 GITYQEEAIPAPGDRLSLLSDVLFVKAP-KRAIVFTRTKAETEEVATGLLRLGHPARAIH 268
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ RER + FR+G+ VLVATDVAARGLDIP VDL++HY P+ PET+ HRSGRT
Sbjct: 269 GDLSQTDRERVMRAFREGEVRVLVATDVAARGLDIPEVDLVVHYRFPDKPETYQHRSGRT 328
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAG+ G ++++ +RR + LER VG + V+PP E+VLE+ ++A L V
Sbjct: 329 GRAGRGGEVVILYGPRERRELSELERAVGRTLKRVNPPTPEEVLEAKWHHLLARLARVPE 388
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ + A RL E + +AA +A L G + P +SL+ E+GW+T + T
Sbjct: 389 RDYKLYQDFASRLFAEGRVEVVAALMALLLGGA--PKEKSLLTGEEGWLTFKAT 440
>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2 [Pongo abelii]
Length = 783
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|1230564|gb|AAB02546.1| Gu protein, partial [Homo sapiens]
Length = 801
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 362 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 418
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 419 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 478
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 479 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 538
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 539 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 598
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 599 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 657
Query: 290 QL 291
L
Sbjct: 658 IL 659
>gi|412985798|emb|CCO16998.1| predicted protein [Bathycoccus prasinos]
Length = 689
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 192/343 (55%), Gaps = 17/343 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLA 59
ML +GF +DVE IL+ + Q++LFSAT+P WVK +++++L IDLVGN+ +K +
Sbjct: 247 MLNMGFVDDVETILK-VSGDIQTLLFSATLPPWVKDIAKRFLKKDYATIDLVGNEKQKAS 305
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSII--ASEA 116
++ + + +++ DLI A GG+ I+F TKRD E+ AL S + ++A
Sbjct: 306 GQVQHLLLPCQWQERVSLIPDLIRAKAPTGGRCILFCDTKRDCTELCDALQSSLEKGAKA 365
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q+ RE L GFR KF VLVATDVAARGLDI V+L+I E P DPET++HRSG
Sbjct: 366 LHGDIAQNNREVVLQGFRDNKFQVLVATDVAARGLDISGVELVIQCEPPKDPETYIHRSG 425
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G + + T + ++ER G +F + PP ++ +++A+ V + V
Sbjct: 426 RTGRAGATGICVTLLTPRNEWAIPNIERKGGFRFVRIGPPQPAEMAKAAAKIVCEKVRAV 485
Query: 237 HPESVEFFTPTAQRLIEE-----KGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVT 288
H + + F A+ L+EE +G DA LA ALA G RSL+ G T
Sbjct: 486 HKGAAKLFMQAARDLLEEGDDHDEGRDAVEVLAMALAHACGHGE-LRQRSLLTSTAGSTT 544
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD 331
L L SA + V FL P +I ++ + D+
Sbjct: 545 LIL---SAGGTEIRTPTYVWNFLKQRLPEDEVQINRLTLSQDN 584
>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
Length = 715
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 276 MLDMGFADQVEEILSVAYKKDSEDDP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 332
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 333 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 392
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 393 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 452
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 453 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 512
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 513 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 571
Query: 290 QL 291
L
Sbjct: 572 IL 573
>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 isoform 1 [Homo sapiens]
gi|76803555|sp|Q9NR30.5|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
protein 21; AltName: Full=Gu-alpha; AltName:
Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
RNA helicase II; AltName: Full=RH II/Gu
gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
sapiens]
gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
Length = 783
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|426364956|ref|XP_004049557.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Gorilla gorilla
gorilla]
Length = 783
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
gi|410222082|gb|JAA08260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252906|gb|JAA14420.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252908|gb|JAA14421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410252910|gb|JAA14422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
gi|410292262|gb|JAA24731.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Pan troglodytes]
Length = 783
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|397489922|ref|XP_003815960.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan paniscus]
Length = 783
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
Length = 780
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ +DL+
Sbjct: 342 MLDMGFADQVEDILKVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKATYEQVDLI 398
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + + ++ D+I VY+ G+TIVF +TK++A E+S +
Sbjct: 399 GKKTQKTAITVEHLAIKCHWSQRAAVIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSI 458
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 459 KQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 518
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 519 YIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 578
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 579 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVTM 637
Query: 290 QL 291
L
Sbjct: 638 IL 639
>gi|344275097|ref|XP_003409350.1| PREDICTED: nucleolar RNA helicase 2 [Loxodonta africana]
Length = 787
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 346 MLDMGFADQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 402
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + T++ D+I VY+ G+TI+F +TK++A E+S +
Sbjct: 403 GKKTQKTAITVEHLAIKCHWTHRATVIGDVIRVYSGYHGRTIIFCETKKEAQELSQNASI 462
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 463 KQDAQSLHGDIPQKQREITLKGFRNGAFGVLVATNVAARGLDIPEVDLVVQSSPPKDVES 522
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 523 YIHRSGRTGRAGRTGVCICFYQYKEEYQLAQVEQKAGIKFKRIGVPSATEIVKASSKDAI 582
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ +F +A++LIEEKG +ALAAALA +SG + RSLI+ + G VT+
Sbjct: 583 RYLDSVPPTAISYFKQSAEKLIEEKGAVEALAAALAHISG-ATAVDQRSLISLDVGLVTM 641
Query: 290 QL 291
L
Sbjct: 642 IL 643
>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
Length = 783
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 188/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 344 MLDMGFADQVEEILSVAYKKDSEDDP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 400
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 401 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAI 460
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 461 KQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVES 520
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 521 YIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAI 580
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+
Sbjct: 581 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSNVGFVTM 639
Query: 290 QL 291
L
Sbjct: 640 IL 641
>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 178/299 (59%), Gaps = 8/299 (2%)
Query: 1 MLAVGFEEDVELILE---NLPPKR--QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQ 54
M +GF E VE IL P+ Q++LFSAT P W+ +++KY+ IDL+G++
Sbjct: 337 MFDMGFSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHR 396
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI T + K +L DL+ VY+ GKTI+F +K +A ++ + S+
Sbjct: 397 SQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQ 456
Query: 114 S-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
S ++LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P + + +V
Sbjct: 457 SAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYV 516
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG+ G I ++ +R +R++ER G F+ V P + +V +SS+ + +
Sbjct: 517 HRSGRTGRAGRTGVCISLYEPWERHYLRNVERSTGITFKRVGVPSLLNVAKSSSADAIKS 576
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L+ V + +E F AQ LIE+KG AA + RSL+N E G T+ L
Sbjct: 577 LDTVPADVIEHFKEYAQELIEQKGALTAIAAALAHISGATSIKQRSLLNMEAGCDTITL 635
>gi|384440186|ref|YP_005654910.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
gi|359291319|gb|AEV16836.1| ATP-dependent RNA helicase [Thermus sp. CCB_US3_UF1]
Length = 512
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 192/295 (65%), Gaps = 13/295 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE IL+ P +RQ++LFSAT+PSW ++L+ +Y+ P+ I++V E
Sbjct: 156 MLSMGFEEEVEAILKATPQERQTLLFSATLPSWARRLAERYMRAPVVINVVRE------E 209
Query: 61 GIKLYAISTTATSKR-TILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEAL 117
G+ + A S+R ++LSDL+ Y K K IVFT+TK + +EV+ L + + A+
Sbjct: 210 GVTYREEALLAPSERLSLLSDLL--YVKSPKRAIVFTRTKAETEEVATGLLRLGHPARAI 267
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ RER + FR G+ +LVATDVAARGLDIP VDL++H+ LP+ PET+ HRSGR
Sbjct: 268 HGDLSQADRERVMRAFRDGEVRILVATDVAARGLDIPEVDLVVHFRLPDKPETYQHRSGR 327
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG+ G ++++ + ++R + LER VG F+ V+PP E+VLE+ ++A L V
Sbjct: 328 TGRAGRGGEVVILYGNREKRELAELERAVGRTFKRVNPPTPEEVLEAKWHHLLARLARVP 387
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
+ + + A RL E + +AA +A L G + P +SL+ E+GW+T + T
Sbjct: 388 EKDYKLYLDFAGRLFAEGRVEVVAALMALLLGGA--PREKSLLTGEEGWLTFKAT 440
>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
Length = 591
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 180/308 (58%), Gaps = 6/308 (1%)
Query: 1 MLAVGFEEDVELI----LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56
ML GF E ++ I + K Q +LFSATMP ++ + Y+ N + +D VG+
Sbjct: 156 MLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPDFILSTVKNYMPNHVTVDTVGSSRN 215
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIASE 115
+ ++G+ AI T +R +++D++ +Y+ G+TI+FTQTK+DA+E++L +
Sbjct: 216 RTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRTIIFTQTKKDANELALETDLRQEVQ 275
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
LHGDI Q QRE +L FR GK LVATDVAARGLDIP VDL++ E P D E+++HRS
Sbjct: 276 VLHGDIPQKQREMSLQAFRDGKVRCLVATDVAARGLDIPEVDLVVQCEPPKDVESYIHRS 335
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
GRTGRAG+ GT I + +Q +R +ER G F + P EDV+++SA +L
Sbjct: 336 GRTGRAGRTGTCICFYKPNQEDAMRYVERRAGISFRRIGAPQPEDVIKASARDAFRSLEA 395
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295
++ + F A+ LIEE+G +A AA + +RSL++ + TL + ++
Sbjct: 396 INDSVLAHFKDAARELIEERGAEAALAAALAHISGATEIKTRSLLSSMADYTTLHIKVET 455
Query: 296 AF-SRGFM 302
++GF+
Sbjct: 456 EIRTKGFV 463
>gi|452824703|gb|EME31704.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 758
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 166/261 (63%), Gaps = 8/261 (3%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
ML++GF ED++ I LPP +RQ++LFSAT+P WV++L++ +NP+ +D +GN+D K
Sbjct: 352 MLSMGFAEDIDKISTYLPPTRERQTLLFSATIPPWVQELAKSNKNNPIIVDAIGNKDTKT 411
Query: 59 AEGIKLYAISTTAT--SKRTILSDLITVYAK---GGKTIVFTQTKRDADE-VSLALTSII 112
+ ++ A+ T S++ IL +I+VY+ + IVF +TK + D VS
Sbjct: 412 STTVEHIALRVPPTELSRKLILESVISVYSAEMTNFRCIVFARTKAEVDSLVSSGRIHNG 471
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
A++ALHGDI+Q QRE TL+ FR+G F VL+ATDVAARGLDI VDL+I Y +P D + ++
Sbjct: 472 AAQALHGDITQKQREITLSKFREGSFQVLIATDVAARGLDINGVDLVIQYRVPEDIDMYI 531
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HR+GRTGRAG++GT I+++T +R + +E +F SPP ++ V+E+ A +
Sbjct: 532 HRAGRTGRAGRQGTCIILYTDEERNKLTLMENVCKIRFRLESPPSIQQVIETKANGFLRA 591
Query: 233 LNGVHPESVEFFTPTAQRLIE 253
V + VE P + IE
Sbjct: 592 SQAVEGKWVEPLIPVVKEYIE 612
>gi|417515609|gb|JAA53623.1| DEAD (Asp-Glu-Ala-Asp) box helicase 21 [Sus scrofa]
Length = 784
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 345 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKSTYEQVDLI 401
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 402 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAV 461
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 462 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 521
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 522 YIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKDAI 581
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 582 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVTM 640
Query: 290 QL 291
L
Sbjct: 641 IL 642
>gi|384247126|gb|EIE20614.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 698
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 188/339 (55%), Gaps = 8/339 (2%)
Query: 1 MLAVGFEEDVELILE-NLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKL 58
ML +GF EDVE IL K Q++LFSAT+PSWVK ++R++L N +DLVG K
Sbjct: 267 MLNMGFVEDVEKILNAGGDIKVQTLLFSATLPSWVKDITRRFLQPNHKLVDLVGTDKMKA 326
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALH 118
+ +K + + + T+ +DL+ Y G+TI+F TK+D +E+ +L + ++ LH
Sbjct: 327 STSVKHMVLPCHWSQRATVAADLVRCYGALGRTIIFCDTKKDCNELVASLGEGMRAQPLH 386
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GDI Q QRE TL FR KF +LVATDVAARGLDI V+L+I E P DPET++HRSGRT
Sbjct: 387 GDIPQQQREVTLKAFRAAKFDILVATDVAARGLDINGVELVIQIEPPKDPETYIHRSGRT 446
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRA G ++ + + + + + G FE + P ++ + E+ +L V
Sbjct: 447 GRASSTGVSVTLVDRKKEGLIPFIAKRAGVTFERIGAPQPSEMARIAGERASESLVEVDK 506
Query: 239 ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296
V +F A +L+E G +ALA ALA+++GFS +RSL+ + + TLQ
Sbjct: 507 TVVPWFRAAAAQLLETVGDPEEALAMALAKVTGFSS-IRARSLLTAHEDYTTLQFHAGQE 565
Query: 297 FSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
R S+ LSD ++I I + D + I
Sbjct: 566 IQRPGFVFTSLRRHLSD---EVVEQIKGITLTTDGKSAI 601
>gi|350592792|ref|XP_001928807.4| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
scrofa]
Length = 844
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/302 (41%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 405 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVYNVAKKYMKSTYEQVDLI 461
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK++A E+S
Sbjct: 462 GKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAV 521
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 522 RQDAQSLHGDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 581
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ +
Sbjct: 582 YIHRSGRTGRAGRTGICICFYQHKEEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKDAI 641
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 642 RLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISGAT-SVDQRSLINSDAGFVTM 700
Query: 290 QL 291
L
Sbjct: 701 IL 702
>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
Length = 517
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 205/346 (59%), Gaps = 20/346 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE +L PP RQ++LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E
Sbjct: 163 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHG
Sbjct: 223 ----EAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTG
Sbjct: 278 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 338 RAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEK 397
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLT 292
A RL E + +AA LA L G + P +SL+ E+GW T L L
Sbjct: 398 DYRLHLDFAGRLFSEGRVEVVAALLALLLGGA--PKEKSLLTGEEGWRTYKATGPRLSLP 455
Query: 293 RDSAFSRG-----FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
R A +G A + G D+ P A E+ + + RV
Sbjct: 456 RLVALLKGQGLEVGKIAEAEGGLYVDLRPEARPEVAGLRLEPARRV 501
>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB8]
Length = 510
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 205/346 (59%), Gaps = 20/346 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE +L PP RQ++LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E
Sbjct: 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++ALHG
Sbjct: 216 ----EAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHG 270
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTG
Sbjct: 271 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTG 330
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 331 RAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEK 390
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT-------LQLT 292
A RL E + +AA LA L G + P +SL+ E+GW T L L
Sbjct: 391 DYRLHLDFAGRLFSEGRVEVVAALLALLLGGA--PKEKSLLTGEEGWRTYKATGPRLSLP 448
Query: 293 RDSAFSRG-----FMSARSVMGFLSDVYPTAADEIGKIHIIADDRV 333
R A +G A + G D+ P A E+ + + RV
Sbjct: 449 RLVALLKGQGLEVGKIAEAEGGLYVDLRPEARPEVAGLRLEPARRV 494
>gi|452819914|gb|EME26964.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 671
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 193/334 (57%), Gaps = 34/334 (10%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG-NQDEKLA 59
ML +GF ++E IL + +Q++LFSAT+P+WVK+ S K + NP +DLVG ++D K+
Sbjct: 241 MLEIGFASELEQILSAVSGNKQTLLFSATLPTWVKQQSAKNMRNPAFLDLVGEDKDAKIP 300
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHG 119
+ +K YAI +K ++ D+++V+ G K I+FT TKR+AD + + S +HG
Sbjct: 301 KDVKHYAIEVPPFAKEAVIGDILSVFG-GEKCIIFTPTKREADMLGSSEYIRDESTVIHG 359
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-DPET---FVHRS 175
DI Q RE +NGFR+GKF L+ATDVAARG+DIPNVD ++ P PE+ +VHRS
Sbjct: 360 DIPQDGRELAINGFRKGKFRNLIATDVAARGIDIPNVDFVLMTYTPTPTPESIDMYVHRS 419
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVA 231
GRTGRAG +G ++L+++ +++ + LER +G +FE + PP E + LE S ++V+
Sbjct: 420 GRTGRAGNKGKSMLIYSQAEKDKLLRLERALGIRFERLHPPSSEQLLMVSLERSWKKVLG 479
Query: 232 T---------------LNGVHPESVEFFTPTA-------QRLIEEKGTDALAAALAQLSG 269
T + +H + T + + +E+K L AALA+L G
Sbjct: 480 TPDSLVSQVLPILEDKIKNIHHQQYNSVTNGSVLDAIMNETKLEKKLQILLGAALARLGG 539
Query: 270 FSRPPSSRSLINHEQGWVT--LQLTRDSAFSRGF 301
F RSL+ + G+ T +Q R A +GF
Sbjct: 540 FHSTVQHRSLLTSKHGFATFHIQDNRPIAKRKGF 573
>gi|148224339|ref|NP_001082033.1| nucleolar RNA helicase 2 [Xenopus laevis]
gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
Length = 800
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 177/302 (58%), Gaps = 14/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
M VGF E VE IL E P Q++LFSAT P W+ +++KY+ +DLV
Sbjct: 379 MFDVGFSEQVEEILSVRYKPDPEENP---QTLLFSATCPDWMYNVAKKYMRKQYEKVDLV 435
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G++ +K A ++ AI + K +L D++ VY+ GKTI+F +K A E+S S
Sbjct: 436 GHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGS 495
Query: 111 IIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S + LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P + +
Sbjct: 496 LKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEAD 555
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
+VHRSGRTGRAG+ G I ++ ++ +R++ER G F+ V P + +V +SS+
Sbjct: 556 AYVHRSGRTGRAGRTGVCISLYEPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADA 615
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G++T+
Sbjct: 616 IKSLDTVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNMEAGYMTI 675
Query: 290 QL 291
L
Sbjct: 676 TL 677
>gi|407397666|gb|EKF27840.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi marinkellei]
Length = 634
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 175/302 (57%), Gaps = 13/302 (4%)
Query: 1 MLAVGFEEDVELILENLPPK---------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51
ML +GF++D+EL+L+ + + Q++LFSAT+P WV S D ID+V
Sbjct: 211 MLDIGFKDDIELLLQKVAEQNGSTEGNLNHQTLLFSATVPEWVHTCSFIPKDKEF-IDMV 269
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + A IK Y + +L+DL+ VY+ + G+T+VFT TK+D ++S+ T
Sbjct: 270 GQGTMRAAHTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKDCHDLSINNTK 329
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+ S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D +
Sbjct: 330 L-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDA 388
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 389 FIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDAA 448
Query: 231 ATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G VT+
Sbjct: 449 EDLARVERSATNLFMEQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGSVTI 508
Query: 290 QL 291
Q+
Sbjct: 509 QM 510
>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 660
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 201/351 (57%), Gaps = 21/351 (5%)
Query: 1 MLAVGFEEDVELILENLPP---KRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDE 56
ML +GF ED++ I + K Q +LFSAT+P W+ +++ +Y+D ++LV + D+
Sbjct: 253 MLEMGFREDIQRIFDATQKSGVKPQILLFSATIPKWLHEIADRYMDKKYEFVNLVQDSDD 312
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSIIASE 115
+ + ++ AI S+ T+L+ L+ VY K +TI+F +TK+D +E+S+
Sbjct: 313 QASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNARTIIFAETKKDCNELSVHPEIKQDCH 372
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------DPE 169
LHGDI+Q QRE T+ FR G+ +L+ATDVAARGLD+ NVDL+I+ E P D +
Sbjct: 373 VLHGDIAQAQRETTMKAFRDGQIRLLIATDVAARGLDM-NVDLVINSEPPRKASGYADVD 431
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
T+VHRSGRTGRAGK+G I ++T Q+ + +ER +G KF P E++++ SAE+
Sbjct: 432 TYVHRSGRTGRAGKKGVCITLYTPRQKELLDLIERKIGNKFIMRDQPSQEELIKVSAEKA 491
Query: 230 VATLNGVHPESVEFFTPTAQRLIE-EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+++ V P + F A+ +E + ALA ALA ++G + PP SL++ +VT
Sbjct: 492 FKSMDQVDPVMIAIFEEKAEEYLENHEPKKALAVALACITGHATPPRPHSLMSGTPDYVT 551
Query: 289 LQLTRDSAF-SRGFMSARSVMGFLS-DVYPTAADEIGKIHIIADDR-VCID 336
+ T ++G+ V L+ D P A+ I ++ I D C D
Sbjct: 552 VLFTSSKEIRAKGY-----VWNALNRDFDPEVANNIKQLTITQDSYGACFD 597
>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
Length = 633
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 181/298 (60%), Gaps = 15/298 (5%)
Query: 1 MLAVGFEEDVELILENLPPKR---QSMLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDE 56
ML +GF + VE IL + K Q++LFSATMP W K KY+ + I DL+G
Sbjct: 210 MLDMGFCDIVEEILSHAYVKDRHPQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDAL 269
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGG---KTIVFTQTKRDADEVSLALTSIIA 113
+ + ++ IS + + DL+ VY GG +TI+F+ TK++A+E LAL+S++
Sbjct: 270 RTSTTVEHKVISCPYHERAATIGDLVKVY--GGDHARTIIFSPTKKEANE--LALSSVLK 325
Query: 114 SEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 171
E LHGDI Q QRE TL GFR+G F LVATDVAARGLDIP VDL+I E P D +T+
Sbjct: 326 QEVQVLHGDIQQAQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLVIQCEPPKDADTY 385
Query: 172 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
+HRSGRTGRA + G I + + + ++S+E + G F + P + D++++++
Sbjct: 386 IHRSGRTGRANRTGICITFYKPTHQDRIKSIESEAGINFCRIGAPQLGDIIQATSRDAAK 445
Query: 232 TLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+L+ V E + F A +IE KG AL+AALA +SG++ ++RSL++ +G+ T
Sbjct: 446 SLDSVPAEVLVHFESIASEIIETKGAVKALSAALAHISGYT-SITNRSLLSSREGFTT 502
>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 694
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 203/349 (58%), Gaps = 18/349 (5%)
Query: 1 MLAVGFEEDVELILENLPPK----RQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQD 55
ML +GF+E++E + E + RQ +LFSATMP WV K+ ++Y+ ++ + IDLV
Sbjct: 306 MLDMGFKEEMEKVFEACGEEGEQGRQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGT 365
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSIIA 113
K ++ ++ I TS+ + ++D+++VY GG +TIVF TKRD +E+ +
Sbjct: 366 VKASKDVEHIGIPCHWTSRSSTINDIVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYD 425
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN------D 167
+ALHGDI+Q RE TL GF++G F VLVATDVAARGLD+ VDL+++ E P D
Sbjct: 426 CQALHGDITQANRESTLAGFKKGSFKVLVATDVAARGLDMI-VDLVLNAEPPTHQSGRVD 484
Query: 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
E++VHRSGRTGRAG++G I ++T QR + +ER +G F + P +D++ +SA
Sbjct: 485 TESYVHRSGRTGRAGRKGMCITLYTPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAG 544
Query: 228 QVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGW 286
+ + V ++ + A++LI+EKG +AL AALA ++G + RSL+++ +G
Sbjct: 545 AAIDDIRAVDDSVIDLYKTAAEQLIDEKGALNALCAALACMTGRTEAMPVRSLLSNSEGH 604
Query: 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
VT+ D ++ LS AAD I + + D C+
Sbjct: 605 VTIIFRSDHPIEYMAYCWTAIRKVLSSA---AADNIRGMQLSEDGLACV 650
>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 136/216 (62%), Gaps = 36/216 (16%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGFEEDVE IL++ P RQ+ LFSATMPSWVK++++K+L P ++
Sbjct: 158 MLNVGFEEDVEAILQDCPESRQTFLFSATMPSWVKQITKKFL-KPGHV------------ 204
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
V K I FTQTKR ADE++ AL +ASE LHGD
Sbjct: 205 -----------------------VVDLDKKAICFTQTKRAADELTAALGRRVASEVLHGD 241
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL FR +F+VL+ATDVAARGLDI +VDL+IHYELPND E+FVHR GRTGR
Sbjct: 242 IAQAQRERTLQRFRDNRFSVLIATDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGR 301
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
AG+ G AI M T + +R ++++ GC+F + P
Sbjct: 302 AGQLGAAIAMHTDRESYMIRRIKKETGCEFRTIGIP 337
>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
Length = 768
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 177/302 (58%), Gaps = 14/302 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
M +GF E VE IL E P Q++LFSAT P W+ +++KY+ +DLV
Sbjct: 347 MFDMGFSEQVEEILSVRYKPDPEENP---QTLLFSATCPDWMYNVAKKYMRKQYEKVDLV 403
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G++ +K A ++ AI + K +L D++ VY+ GKTI+F +K A E+S S
Sbjct: 404 GHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGS 463
Query: 111 IIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S + LHGD+ Q +RE L GFRQG F VL+AT+VAARGLDIP VDL++ Y P + +
Sbjct: 464 LKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEAD 523
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
+VHRSGRTGRAG+ G I ++ ++ +R++ER G F+ V P + +V +SS+
Sbjct: 524 AYVHRSGRTGRAGRTGVCISLYEPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADA 583
Query: 230 VATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ +L+ V + +E F AQ LIE+KG AA + RSL+N E G++T+
Sbjct: 584 IKSLDTVPADVIEHFKEYAQELIEKKGALTALAAALAHISGATSIKQRSLLNMEAGYMTI 643
Query: 290 QL 291
L
Sbjct: 644 TL 645
>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 660
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 178/305 (58%), Gaps = 19/305 (6%)
Query: 1 MLAVGFEEDVELILENLP---------PKRQSMLFSATMPSWVKKLSRKYLDNPLN---I 48
ML +GF++D+EL+L+ + P Q++LFSAT+P WV S ++ P N I
Sbjct: 211 MLDIGFKDDIELLLQKVAEQNGSTEGNPNHQTLLFSATVPEWVHTCS--FI--PRNKEFI 266
Query: 49 DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLA 107
D+VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK++ ++S+
Sbjct: 267 DMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSIN 326
Query: 108 LTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 167
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D
Sbjct: 327 NTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTD 385
Query: 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
+ F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 386 IDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVAR 445
Query: 228 QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQGW 286
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G
Sbjct: 446 DAAEDLARVERSATNLFMEQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGS 505
Query: 287 VTLQL 291
VT+Q+
Sbjct: 506 VTIQM 510
>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 633
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 178/305 (58%), Gaps = 19/305 (6%)
Query: 1 MLAVGFEEDVELILENLP---------PKRQSMLFSATMPSWVKKLSRKYLDNPLN---I 48
ML +GF++D+EL+L+ + P Q++LFSAT+P WV S ++ P N I
Sbjct: 211 MLDIGFKDDIELLLQKVAEQNGSTEGNPTHQTLLFSATVPEWVHTCS--FI--PRNKEFI 266
Query: 49 DLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLA 107
D+VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK++ ++S+
Sbjct: 267 DMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSIN 326
Query: 108 LTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPND 167
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P D
Sbjct: 327 NTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTD 385
Query: 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
+ F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 386 IDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVAR 445
Query: 228 QVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQGW 286
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G
Sbjct: 446 DAAEDLARVERSATNLFMEQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKGS 505
Query: 287 VTLQL 291
VT+Q+
Sbjct: 506 VTIQM 510
>gi|149511217|ref|XP_001519340.1| PREDICTED: nucleolar RNA helicase 2 [Ornithorhynchus anatinus]
Length = 757
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 117/301 (38%), Positives = 178/301 (59%), Gaps = 13/301 (4%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE IL E+ P Q++LFSAT P WV +++KY+ +DL+
Sbjct: 330 MLDMGFAEQVEEILSVAYKKDSEDNP---QTLLFSATCPHWVYDVAKKYMKVKYEQVDLI 386
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI + ++ +I VY+ G+TIVF +TK++A E+SL+
Sbjct: 387 GKKTQKTAMTVEHLAIKCHWAQRAAVIGTVIQVYSGTHGRTIVFCRTKKEATELSLSPAI 446
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 447 KQDAQSLHGDIPQKQREITLKGFRSGAFGVLVATNVAARGLDIPEVDLVVQSSPPEDVES 506
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + + + + +E+ G F+ + P +V+++S++ V+
Sbjct: 507 YIHRSGRTGRAGRTGICVCFYQAKEEYQLSQVEQKAGITFKRIGVPTTSEVVKASSKDVL 566
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290
+L+ + ++ +F A+ LIEEKG AA + RSLIN G+VT+
Sbjct: 567 RSLDSIPLHAINYFKQPARELIEEKGAVDALAAAIAVISGVTSVEQRSLINSAVGFVTMT 626
Query: 291 L 291
L
Sbjct: 627 L 627
>gi|343470250|emb|CCD17000.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 633
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 177/302 (58%), Gaps = 13/302 (4%)
Query: 1 MLAVGFEEDVELILENLPP---------KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51
ML +GF+ED+EL+L+ + Q++LFSAT+P WV S N ID+V
Sbjct: 204 MLDIGFKEDIELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVHTCSF-ISKNKKFIDMV 262
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + + A IK + + ++L+DL+ VY+ + G+T++FT TK+D ++S+ T
Sbjct: 263 GQGEMRAANTIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK 322
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+ S+ LHGD+ Q QRE T+ FR+ F+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 323 L-DSQCLHGDMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDA 381
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
F+HR+GRTGRAG++G +L+ V +ER KFE + P E++L++ A
Sbjct: 382 FIHRAGRTGRAGRKGVCVLLHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARDAA 441
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ V + F A L+++ T+ LA+A+A +SG++ + R LI +G T+
Sbjct: 442 EDMARVERSATNLFMEQAAELLKDADPTEILASAIAVMSGYTSSITKRGLITGAKGSATI 501
Query: 290 QL 291
Q+
Sbjct: 502 QM 503
>gi|342181264|emb|CCC90744.1| putative nucleolar RNA helicase II [Trypanosoma congolense IL3000]
Length = 633
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 177/302 (58%), Gaps = 13/302 (4%)
Query: 1 MLAVGFEEDVELILENLPP---------KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51
ML +GF+ED+EL+L+ + Q++LFSAT+P WV S N ID+V
Sbjct: 204 MLDIGFKEDIELLLQRVAEHNGSTYERCNHQTLLFSATVPDWVHTCSF-ISKNKKFIDMV 262
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + + A IK + + ++L+DL+ VY+ + G+T++FT TK+D ++S+ T
Sbjct: 263 GQGEMRAANTIKFFRRKCGFSEVSSMLADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTK 322
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+ S+ LHGD+ Q QRE T+ FR+ F+VL+ATDVAARGLD+P VDL+I P+D +
Sbjct: 323 L-DSQCLHGDMQQDQRESTMKSFRENMFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDA 381
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
F+HR+GRTGRAG++G +L+ V +ER KFE + P E++L++ A
Sbjct: 382 FIHRAGRTGRAGRKGVCVLLHQPRDEHIVERIERHANIKFEVLPAPTREEILKAVARDAA 441
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ V + F A L+++ T+ LA+A+A +SG++ + R LI +G T+
Sbjct: 442 EDMARVERSATNLFMEQAAELLKDADPTEILASAIAVMSGYTSSITKRGLITGAKGSATI 501
Query: 290 QL 291
Q+
Sbjct: 502 QM 503
>gi|403274099|ref|XP_003928826.1| PREDICTED: nucleolar RNA helicase 2 [Saimiri boliviensis
boliviensis]
Length = 840
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 174/273 (63%), Gaps = 4/273 (1%)
Query: 22 QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80
Q++LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D
Sbjct: 448 QTLLFSATCPHWVFNVAKKYMKSAYEQVDLIGKKTQKTAITVEHLAIKCHWTQRSGVIGD 507
Query: 81 LITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 139
+I VY G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F
Sbjct: 508 VIRVYGGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFG 567
Query: 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199
VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 568 VLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQL 627
Query: 200 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT-D 258
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +
Sbjct: 628 VQVEQKAGIKFKRIGIPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVE 687
Query: 259 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
ALAAALA +SG + RSLIN G+VT+ L
Sbjct: 688 ALAAALAHISGATS-VDQRSLINSNVGFVTMIL 719
>gi|407835252|gb|EKF99205.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
Length = 642
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 176/306 (57%), Gaps = 21/306 (6%)
Query: 1 MLAVGFEEDVELILENLP---------PKRQSMLFSATMPSWVKKLS----RKYLDNPLN 47
ML +GF++D+EL+L+ + P Q++LFSAT+P WV S +K
Sbjct: 211 MLDIGFKDDIELLLQKVAEQNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRKKEF----- 265
Query: 48 IDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSL 106
ID+VG + A IK Y + +L+DL+ VY+ + G+T+VFT TK++ ++S+
Sbjct: 266 IDMVGQGTMRAANTIKFYRRKCHFSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSI 325
Query: 107 ALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166
T + S+ LHGD+ Q QRE T+ FR KF+VL+ATDVAARGLD+P VDL+I P
Sbjct: 326 NNTKL-DSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPT 384
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
D + F+HR+GRTGRAG++G +L+ V +ER KFE + P +++L + A
Sbjct: 385 DIDAFIHRAGRTGRAGRKGVCVLLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVA 444
Query: 227 EQVVATLNGVHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQG 285
L V + F A L+++ T+ LA+A+A +SG++ + R LI +G
Sbjct: 445 RDAAEDLARVERSATNLFMDQAAELLKDADATEILASAIAVMSGYTSSITRRGLITGAKG 504
Query: 286 WVTLQL 291
VT+Q+
Sbjct: 505 SVTIQM 510
>gi|443708232|gb|ELU03439.1| hypothetical protein CAPTEDRAFT_52524, partial [Capitella teleta]
Length = 707
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 178/300 (59%), Gaps = 8/300 (2%)
Query: 1 MLAVGFEEDVELILE------NLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGN 53
ML +GF E+V+ IL+ ++ Q++LFSATMP WV+K S+KY+ N NIDLVG
Sbjct: 275 MLDMGFAENVDEILQTRYNENDVESNPQTLLFSATMPDWVQKTSQKYMKKNTRNIDLVGR 334
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII 112
+ + + ++ A+ + + D++ VY+ G+ +VF +TKRDAD+++++ I
Sbjct: 335 ERVRTSITVQHLALQCNYQDRAATVGDVLRVYSGSQGRAMVFCETKRDADDLAVSPCIGI 394
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ LHGDI Q +R+ L FR+G++ L+ TDVAARGLDIP VDL++ P D ++++
Sbjct: 395 ETHVLHGDIPQEKRQLVLQKFREGRYKCLITTDVAARGLDIPEVDLVVQCCPPKDVDSYI 454
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG++GT +L + V+ +ER G KF V P ++++++A
Sbjct: 455 HRSGRTGRAGRQGTCVLFYKYGSEYEVQRVERTAGFKFRRVGAPSRNEIIDAAARDARLV 514
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
L V E++ F +A+ LIEEKG AA + + SRSL+ ++G+ T T
Sbjct: 515 LATVPEETLGHFRESAKLLIEEKGGVDAVAAALAVITGNTEMKSRSLLTSKEGFTTYVFT 574
>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
Length = 655
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 182/304 (59%), Gaps = 12/304 (3%)
Query: 1 MLAVGFEEDVELILENLPPKR------QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGN 53
ML +G E V+ ILE K Q++ FSAT+P+WV + +RKY+ P ++D++G
Sbjct: 248 MLEMGMVEQVDEILEAAYKKDDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGT 307
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSII 112
+ + A ++ AI ++ +++D+IT+Y+ + G+ +VF +TK++A++ L L ++
Sbjct: 308 EQNRSATTVEHLAIRCGWQARAPVIADIITMYSGQHGRAMVFCETKKEANQ--LVLEGVL 365
Query: 113 ASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
EA LHGDI Q QRE TL FR G VLVATDVAARGLDIP VDL++ E P+D ++
Sbjct: 366 KQEAQVLHGDIPQAQRELTLKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCEPPSDVDS 425
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G + + ++ + +R +ER G KF ++ P +D+++++A
Sbjct: 426 YIHRSGRTGRAGRTGVCVCFYKPNREQDLRFVERRAGIKFRQINAPQPDDIVKAAANDSA 485
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ 290
+ V + + F A++LI EKG AA + S RSL+N ++G+ T+
Sbjct: 486 RAIEEVPDKMLTHFQEAAEKLIAEKGAVNAVAAALAVMSGSSEIKKRSLLNADEGFTTML 545
Query: 291 LTRD 294
D
Sbjct: 546 FHTD 549
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 188/293 (64%), Gaps = 8/293 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE +L PP RQ++LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E
Sbjct: 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++A+HG
Sbjct: 216 ----EAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHG 270
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTG
Sbjct: 271 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTG 330
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 331 RAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEK 390
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
A RL E + +AA LA L G + + RSL+ E+GW T + T
Sbjct: 391 DYRLHLDFAGRLFSEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKAT 441
>gi|390472670|ref|XP_002756342.2| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
Length = 797
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 175/273 (64%), Gaps = 4/273 (1%)
Query: 22 QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80
Q++LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D
Sbjct: 384 QTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIQCHWTQRAAVIGD 443
Query: 81 LITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 139
+I VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F
Sbjct: 444 VIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFG 503
Query: 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199
VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 504 VLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQL 563
Query: 200 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT-D 258
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +
Sbjct: 564 VQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVE 623
Query: 259 ALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
ALAAALA +SG + RSLIN G+VT+ L
Sbjct: 624 ALAAALAHISGAT-SVDQRSLINSNVGFVTMIL 655
>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 690
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 181/297 (60%), Gaps = 11/297 (3%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+P WVK++S ++L + IDLVGN+ K
Sbjct: 269 MLRMGFVEDVELILGKVEDVSKVQTLLFSATLPEWVKQISSRFLKASKKTIDLVGNEKMK 328
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ + +A++ ++ D+I Y+ GG+TI+FT+ + A+E++ L + AL
Sbjct: 329 ASTNVRHIILPCSASAIPQVIPDIIRCYSSGGRTIIFTEKRESANELAGLLH---GARAL 385
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL+GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 386 HGEIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 445
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R + +ER+ G KFE ++ P D+ ++ + V
Sbjct: 446 TGRAGNTGVAVMLY-DPRRSNISKIERESGVKFEHITAPQPADIAQAVGAVAAEKITQVS 504
Query: 238 PESVEFFTPTAQRLIEEKGTDAL---AAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
V F A+ L+ G A+ A ALA +G++ SRSL++ + VTL L
Sbjct: 505 DSIVPAFKSAAEDLLNSSGLSAVELLAKALANAAGYTE-IKSRSLLSSMENHVTLLL 560
>gi|428169310|gb|EKX38245.1| hypothetical protein GUITHDRAFT_158516 [Guillardia theta CCMP2712]
Length = 397
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 143/212 (67%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF++DVE I+E LPP +Q+ L+SATMP+WVK L++KY + + D+VGN + +
Sbjct: 158 MLKMGFQDDVERIIEYLPPSKQTNLWSATMPTWVKDLAQKYCKDVVFFDMVGNDSTRTSI 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
I+ AI+ S +S ++ Y KGG+ +VF +TK + D ++ + + +HGD
Sbjct: 218 TIEHIAIACGYDSHANAISRVVKKYGKGGRVLVFCRTKLEVDRLANHPSLKTTARVIHGD 277
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
+SQ QRERTL FR GKF +LVATDVAARG+D+P V+L+I +P D TFVHRSGRTGR
Sbjct: 278 VSQLQRERTLQDFRSGKFLILVATDVAARGIDVPEVELVIQTCVPEDSNTFVHRSGRTGR 337
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212
AG++G +++ ++ + R + +E ++G +F
Sbjct: 338 AGRKGVSVVFYSGGEERDLLEIEEELGIQFHL 369
>gi|384496820|gb|EIE87311.1| hypothetical protein RO3G_12022 [Rhizopus delemar RA 99-880]
Length = 665
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 178/296 (60%), Gaps = 7/296 (2%)
Query: 3 AVGFEEDVELILENLPPKR-----QSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDE 56
A GFEED+ +L ++ ++ Q++LFSAT+P V + +++L ++ IDL+GN
Sbjct: 232 ARGFEEDMFNLLSSIQEQKETRDYQTLLFSATVPESVMQTIQRFLKEDYERIDLIGNAKN 291
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA 116
+ I+ A+ ++ ++ I+ D++ VY + G T++F TK DA+E+ +
Sbjct: 292 RTNTNIRHIAMPSSYHTRADIIGDVVNVYGRSGLTVIFCATKADANELGAHDKIKQDAAV 351
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGDI+Q RE T+ FR+GK+ +V TDV ARGLDIP VDL+I+ + P DPET+VHRSG
Sbjct: 352 LHGDIAQASREATMKAFREGKYKCIVCTDVLARGLDIPQVDLVINCQPPKDPETYVHRSG 411
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG+ G + + ++ + + + G +FE +S P ED++E++ E +++ V
Sbjct: 412 RTGRAGRSGVCVTFYKPAEEGLLSYISKRTGVQFEQLSAPRPEDIIEATTEDAFKSIDLV 471
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPPSSRSLINHEQGWVTLQL 291
P+ + FF AQ LI++ G AA ++G+ + SRSL+ ++G TL L
Sbjct: 472 KPDVLPFFEKPAQELIDKHGALNAVAAALAFMTGYHQGVPSRSLLTSQEGQTTLLL 527
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 188/293 (64%), Gaps = 8/293 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GFEE+VE +L PP RQ++LFSAT+PSW K+L+ +Y+ NP+ I+++ ++ E
Sbjct: 156 MLSMGFEEEVEALLSATPPFRQTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPVTYEE 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
A+ + +LSDL+ V A + +VFT+TK + +E++ L + ++A+HG
Sbjct: 216 ----EAVPAPVRGRLEVLSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQAIHG 270
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +RER L FRQG+ VLVATDVAARGLDIP VDL++HY LP+ E + HRSGRTG
Sbjct: 271 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTG 330
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G +L++ +RR V +LER VG +F+ V+PP E+VLE+ ++A L V +
Sbjct: 331 RAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEK 390
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
A RL E + +AA LA L G + + RSL+ E+GW T + T
Sbjct: 391 DYRLHLDFAGRLFSEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKAT 441
>gi|422294259|gb|EKU21559.1| dead deah box rna [Nannochloropsis gaditana CCMP526]
Length = 737
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 206/366 (56%), Gaps = 25/366 (6%)
Query: 1 MLAVGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQ 54
ML +GF++D++ + + + +RQ +LFSAT+P WV+K++++Y+ D + +DLV +
Sbjct: 299 MLDMGFKDDIQKVCDAMGQDSHQRRQVLLFSATLPPWVQKVAQQYMRKDKLVQVDLVQGE 358
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK--TIVFTQTKRDADEVSLALTSII 112
D K + ++ AI +S + ++D + VY K TIVF +TK++ +E L + +I
Sbjct: 359 DAKASTDVRHVAIPCHWSSMPSTVADCLAVYGGSNKARTIVFCETKKECNE--LVVNPVI 416
Query: 113 ASE--ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP----- 165
+E ALHGDI Q QRE TL FR+G+ VLVATDVAARGLD+ VDL++ + P
Sbjct: 417 KTECAALHGDIPQAQRETTLKAFREGRVRVLVATDVAARGLDM-TVDLVVQNKPPVTASG 475
Query: 166 -NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
D ET+VHRSGRTGRAG++G + +F+ R V+ +E VG KFE+ P D++ +
Sbjct: 476 RTDVETYVHRSGRTGRAGRKGICVTLFSPKYRFAVKEIEGAVGNKFEWAGAPQPADIVAA 535
Query: 225 SAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQ-LSGFSRPPSSRSLINHE 283
SA + + V + F A +L+EE G + AA L+G ++ SRSL+++
Sbjct: 536 SALAAMEDVANVDDKVFPLFQAAAAKLVEEMGAEEALAAALACLTGHTKELRSRSLLSNS 595
Query: 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVCIDTVILLY 342
+VT Q D + MS V L + P ++I + + AD+ + V Y
Sbjct: 596 DDYVTCQFQAD----QPIMSTGYVWTALRNALPQEVTEDIRGMQLTADNTGAVFDVPSKY 651
Query: 343 FYASVR 348
S++
Sbjct: 652 MKTSMK 657
>gi|224124518|ref|XP_002330043.1| predicted protein [Populus trichocarpa]
gi|222871468|gb|EEF08599.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/118 (84%), Positives = 108/118 (91%)
Query: 41 YLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD 100
Y LN VG+Q+EKLAEGIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRD
Sbjct: 6 YTQIKLNPSHVGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRD 65
Query: 101 ADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158
ADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL
Sbjct: 66 ADEVSMALTNTIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDL 123
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 77/84 (91%)
Query: 250 RLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMG 309
+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRGF+SARSV G
Sbjct: 124 KLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRGFLSARSVTG 183
Query: 310 FLSDVYPTAADEIGKIHIIADDRV 333
FLSDVYP AADE+GKIH+IAD+RV
Sbjct: 184 FLSDVYPAAADEVGKIHVIADERV 207
>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
Length = 722
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 177/313 (56%), Gaps = 28/313 (8%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF D+E IL + K Q +L+SAT PSWVK +S +Y+ NP ID+V + + K +
Sbjct: 312 MLNLGFTHDLERILSYINLKEAQILLYSATTPSWVKDISSRYMKNPFFIDVVDSSN-KTS 370
Query: 60 EGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA- 116
+ IK AI T K +L D+I V + GG+ I+FT+TK +AD I+ SE
Sbjct: 371 KNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEAD--------ILCSEGS 422
Query: 117 --------LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
LHG+I+Q RE T+ FRQG F +L+ATD+AARGLDI NVDL+I PN
Sbjct: 423 FKSLSFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYA 482
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
E ++HR+GRTGRA K+G ++++F+S ++ + +E++ G KF P EDV S++
Sbjct: 483 EIYIHRAGRTGRANKKGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTSASTM 542
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEE------KGTDALAAALAQLSGFSRPPSSRSLINH 282
+ V+P + FF TA LIE+ T+ +A LA +S RSLIN
Sbjct: 543 ASKKIENVNPSVLPFFHKTASELIEKCTQLQMDQTELVARCLALISK-KEQIKKRSLING 601
Query: 283 EQGWVTLQLTRDS 295
+TL S
Sbjct: 602 LSETLTLSFINKS 614
>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 654
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 179/305 (58%), Gaps = 15/305 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLA 59
ML +GF +DVELIL++ Q++LFSAT+P WVK +++++L + +DLVG+Q +K +
Sbjct: 248 MLNMGFVDDVELILKS-SGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKAS 306
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSII--ASEA 116
++ + + + ++ D+I A GG + IVF TKRD E+ L I ++A
Sbjct: 307 GAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKA 366
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ QRE L GFR+ KF VLVATDVAARGLDI V+L+I E P D ET++HRSG
Sbjct: 367 LHGDVSQGQREVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSG 426
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G ++ + T V ++ER G KF + PP ++ +++ + + V
Sbjct: 427 RTGRAGATGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKV 486
Query: 237 HPESVEFFTPTAQRLIEEKGTDA---------LAAALAQLSGFSRPPSSRSLINHEQGWV 287
H + + F A+ L+E + +D+ LA A+A+L+G RSL+ G
Sbjct: 487 HKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGE-LRQRSLLTSHSGQT 545
Query: 288 TLQLT 292
TL T
Sbjct: 546 TLLFT 550
>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax Sal-1]
gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
Length = 720
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 177/313 (56%), Gaps = 28/313 (8%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF D+E IL + K Q +L+SAT PSW+K +S KY+ NP ID+V + + K +
Sbjct: 310 MLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVVDSSN-KTS 368
Query: 60 EGIKLYAISTT--ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA- 116
+ IK AI T K +L D+I V + GG+ I+FT+TK +AD I+ SE
Sbjct: 369 KNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEAD--------ILCSEGS 420
Query: 117 --------LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
LHG+I+Q RE T+ FRQG F +L+ATD+AARGLDI NVDL+I PN
Sbjct: 421 FKSLSFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYA 480
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
E ++HR+GRTGRA K+G ++++F++ ++ + +E++ G KF P EDV S++
Sbjct: 481 EIYIHRAGRTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLPNNEDVFTSASTM 540
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEE------KGTDALAAALAQLSGFSRPPSSRSLINH 282
+ V+P + FF TA LIE+ T+ +A LA +S RSLIN
Sbjct: 541 ASKKIQNVNPSVLPFFHKTASELIEKCTQLQMDQTELVARCLAIISK-KEHIKKRSLING 599
Query: 283 EQGWVTLQLTRDS 295
+TL S
Sbjct: 600 LSETLTLSFVNKS 612
>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
Length = 635
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 160/266 (60%), Gaps = 21/266 (7%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF D+E IL + K Q +L+SAT PSW+K +S KYL NP+ ID++ N K +
Sbjct: 293 MLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTS 351
Query: 60 EGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA- 116
+ I+ AI T K +L D+I V + GG+ I+FT+TK +AD I+ASE
Sbjct: 352 KTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEAD--------ILASEGS 403
Query: 117 --------LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
LHG+I+Q RE T+ FR G F VL+ATD+AARGLDI NVDLII P P
Sbjct: 404 FNYLNFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYP 463
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
++HRSGRTGRA K+G +I++F++ + V +E++ G KF S P E V S ++
Sbjct: 464 AIYIHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGIKFLTESLPSNEQVFHSVSKI 523
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEE 254
++ + V+ E + FF +A LIE+
Sbjct: 524 ILKKIENVNSEVLPFFYKSANELIEK 549
>gi|407954645|dbj|BAM48570.1| malignant cell derived RNA helicase [Homo sapiens]
Length = 731
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 184/302 (60%), Gaps = 20/302 (6%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + + LV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVALV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATPVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLD P VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDNPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L SV + +AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSL-----ASVSYAAVSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 585
Query: 290 QL 291
L
Sbjct: 586 TL 587
>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 176/304 (57%), Gaps = 21/304 (6%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKL 58
ML GF+E++E I+ ++ Q +LFSAT+P WVK+LS KY++ N +I+L+ + +
Sbjct: 184 MLNFGFQENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQT 243
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K YA+ + D+++VY + +TI+F +TKR+ +E+ L ++ L
Sbjct: 244 STTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQPL 303
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QR T GF+ GKF LVAT+VAARGLD P VDLII P D E+++HRSGR
Sbjct: 304 HGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGR 363
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE--QVVATLNG 235
TGRAGK+G + + + +ER KF +S P +D++++S+ Q + L
Sbjct: 364 TGRAGKDGKDMGL--------IERVERVAKIKFIKISAPQHQDIIKASSRDLQTIKRL-- 413
Query: 236 VHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V+ F P AQ +I +ALA ALA +SG+ +RS++ +G++T L
Sbjct: 414 -----VDMFQPVAQEIISRCDPVEALARALACVSGYKDKLQNRSMLGSFEGYITQVLRSS 468
Query: 295 SAFS 298
+ F
Sbjct: 469 TPFQ 472
>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
Length = 755
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 176/309 (56%), Gaps = 28/309 (9%)
Query: 1 MLAVGFEEDVELILENLPPKR-QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF D+E IL N+ K Q +L+SAT PSW+K +S KYL NP ID+V + + K A
Sbjct: 343 MLNLGFTHDIERILSNINLKEAQVLLYSATTPSWIKDISSKYLKNPFCIDVVDSSN-KTA 401
Query: 60 EGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA- 116
+ IK AI T K +L D+I V + GG+ I+FT+TK +AD I+ SE
Sbjct: 402 KNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEAD--------ILCSEGS 453
Query: 117 --------LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
LHG+I+Q RE T+ FRQG F +L+ATD+A+RGLDI NVDL+I PN
Sbjct: 454 FKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYS 513
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
++HR+GRTGRA K+GT+++++++ ++ + +E++ G KF + P E V ++
Sbjct: 514 AVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPNNEQVFHCASAI 573
Query: 229 VVATLNGVHPESVEFFTPTAQRLIEEKGT------DALAAALAQLSGFSRPPSSRSLINH 282
+ V+ E + FF TA+ LI + + + ++ LA ++ RSLIN
Sbjct: 574 ASKKVENVNKEILPFFHDTAKELINKSNSLKIDQIELISRCLAIIAK-KEHIKKRSLING 632
Query: 283 EQGWVTLQL 291
VTL
Sbjct: 633 LSETVTLNF 641
>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
Length = 525
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 173/299 (57%), Gaps = 12/299 (4%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF D+E IL + K Q +L+SAT PSW+K +S KYL NP+ ID++ N K +
Sbjct: 187 MLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVI-NTINKTS 245
Query: 60 EGIKLYAIST--TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEV-SLALTSIIASEA 116
+ I+ AI T K +L D+I V + GG+ I+FT+TK +AD + S + +
Sbjct: 246 KTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNYLTFSV 305
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHG+I+Q RE T+ FR G F VL+ATD+AARGLDI NVDL+I P P ++HRSG
Sbjct: 306 LHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAIYIHRSG 365
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRA K+G +I++F++ + V +E++ G KF S P E V S ++ + + V
Sbjct: 366 RTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFTTESLPNNEQVFHSVSKITLKKIENV 425
Query: 237 HPESVEFFTPTAQRLIEEKG------TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+ E + FF +A LIE+ D ++ LA +S RSLI+ +TL
Sbjct: 426 NTEVLPFFHKSANELIEKSNLLNINQIDLISRCLAIISK-KEYIKKRSLISGLSDTITL 483
>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
Length = 627
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 180/305 (59%), Gaps = 16/305 (5%)
Query: 1 MLAVGFEEDVELILENLPPKR------QSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGN 53
ML +GF + VE IL + P Q++LFSATMP+W+ + +KYL + + + L+
Sbjct: 204 MLDMGFSDIVEEILSYIYPSETDKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDE 263
Query: 54 QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSLALTSI 111
K A ++ AI + + D+I V+ G + I+F + K+DADE LA S
Sbjct: 264 NGSKAASTVEHLAIQCPWRERAGTIPDIIRVHGGGNQARCIIFCERKKDADE--LASHSA 321
Query: 112 IASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
+ S+ LHGD+ Q +RE L FR+GK++VLV T+VAARGLD+P++DL+I P D E
Sbjct: 322 MKSDCHVLHGDVPQEKRELVLKKFREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKDVE 381
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++HRSGRTGRAG++G I + ++ ++ +E+ G F+ + PP ++E++
Sbjct: 382 DYIHRSGRTGRAGRKGVCICFYEPKEKYDLQKVEKLAGFTFKRIFPPSAASIIEANLNDT 441
Query: 230 VATLNGVHPESV-EFFTPTAQRLIEEKGTD-ALAAALAQLSGFSRPPSSRSLINHEQGWV 287
+ + PE+V E F +A +LIE+ G + A+A ALA++SG +RSL++ +G+
Sbjct: 442 IEAFKSI-PETVCESFKESAIKLIEQFGAEKAMALALAKISGKVEELKNRSLLSSMEGFT 500
Query: 288 TLQLT 292
T LT
Sbjct: 501 TYMLT 505
>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
Length = 693
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 179/305 (58%), Gaps = 15/305 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLA 59
ML +GF +DVE IL++ Q++LFSAT+PSWVK +S+++L N +DLVG++ +K +
Sbjct: 246 MLNMGFVDDVETILKS-SGDVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKAS 304
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSII--ASEA 116
++ + + + ++ D+I A GG + IVF TKRD E+ L I ++A
Sbjct: 305 GAVQHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKA 364
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ QRE L+ FR+ KF VLVATDVAARGLDI V+L+I E P D ET++HRSG
Sbjct: 365 LHGDVSQSQREVVLSLFREDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSG 424
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RTGRAG G ++ + T V ++ER G KF + PP ++ +++ + + V
Sbjct: 425 RTGRAGATGISVTLCTPRNEWAVPNIERKGGFKFIRIGPPQPAEMAKAAGKIAGEQIRKV 484
Query: 237 HPESVEFFTPTAQRLIEEKGTDA---------LAAALAQLSGFSRPPSSRSLINHEQGWV 287
H + + F A+ L+E + +D+ LA A+A+L+G RSL+ G
Sbjct: 485 HKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGE-LRQRSLLTSHSGQT 543
Query: 288 TLQLT 292
TL T
Sbjct: 544 TLLFT 548
>gi|397573970|gb|EJK48957.1| hypothetical protein THAOC_32204 [Thalassiosira oceanica]
Length = 900
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 198/385 (51%), Gaps = 59/385 (15%)
Query: 1 MLAVGFEEDVELILENL----PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-D 55
ML +GF EDVE+ILE K Q +LFSAT P WV+++ +Y + L+ID+ G Q
Sbjct: 379 MLNMGFAEDVEVILEGAGNANDEKFQCLLFSATTPPWVREIGSRYQKDALSIDITGEQTG 438
Query: 56 EKLAEGIKLYAISTT--ATSKRTILSDLITVYAKG------------------------- 88
+ A+ ++ AI +K+ IL D+I V
Sbjct: 439 ARTAKTVRHTAIQVPFGIDAKKAILEDIIAVEISKDVKLDASQDSDSEDEDDEHHNVIAA 498
Query: 89 ------------------GKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERT 129
GKTIVFT+TK + D+ VS ++ + ++ +HGDI Q QR+ T
Sbjct: 499 AAKAAKDKSNSALQQKIFGKTIVFTETKAECDQLVSGSVFKTLTAQTIHGDIGQKQRDAT 558
Query: 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189
L FR G F VLVATDVAARG+DI +VDL+I + P D +T+VHRSGRTGRAG +G +++
Sbjct: 559 LAAFRAGSFNVLVATDVAARGIDIKDVDLVIQFHPPRDTDTYVHRSGRTGRAGAKGISVV 618
Query: 190 MFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPT 247
+F +Q R + +ER +G KFE + PP E L ++A+ V E+ E F
Sbjct: 619 LFQQNQARDIVRMERSLGHGFKFELLGPPSTEAALIAAAKTSAIACKSVADETAEHFREA 678
Query: 248 AQRLIE-EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGF-MSAR 305
A L+ + D +A LA +S + SRSL+ E G+ T+++T SRG +S
Sbjct: 679 AGILLATDDAEDVVARCLAAISRRAVQVESRSLLTGEAGFSTVEMTN----SRGRPVSPG 734
Query: 306 SVMGFLSDVYPTAADEIGKIHIIAD 330
VM +S + + E G + D
Sbjct: 735 DVMFTVSKLSRMSQKEGGDLSFDGD 759
>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650, partial [Aureococcus
anophagefferens]
Length = 482
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 145/231 (62%), Gaps = 21/231 (9%)
Query: 1 MLAVGFEEDVELILENLP------------------PKRQSMLFSATMPSWVKKLSRKYL 42
ML++GF +DVE I + + Q++LFSAT PSWVKKL+ KYL
Sbjct: 252 MLSMGFADDVERIFSDFDLDDLLGAAPPPADAAAPLRRPQTLLFSATTPSWVKKLTSKYL 311
Query: 43 DNPLNIDLVGNQDEKLAEGI--KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD 100
++P +D+VG+ ++ A + K + ++ ++L D+I GG+ IVFT TK++
Sbjct: 312 EDPELVDVVGDARQQAATTVTHKAVLVPRGPDARASLLEDIIAAAQGGGRVIVFTSTKKE 371
Query: 101 ADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159
DE++ +A++ LHGDI Q QRE TL FR+G FTVLVATDVAARG+D+ VDL+
Sbjct: 372 CDELAGGPAFQRLAAQVLHGDIGQAQRETTLAQFRRGAFTVLVATDVAARGIDVKGVDLV 431
Query: 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
+ Y P D E +VHRSGRTGRAG++GTA++++ + R VRSLER G F
Sbjct: 432 VQYRTPRDAEGYVHRSGRTGRAGRDGTAVVLYDEREERDVRSLERLTGVTF 482
>gi|115470561|ref|NP_001058879.1| Os07g0143700 [Oryza sativa Japonica Group]
gi|113610415|dbj|BAF20793.1| Os07g0143700, partial [Oryza sativa Japonica Group]
Length = 292
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 118/150 (78%), Gaps = 2/150 (1%)
Query: 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 135
T+ S L +A GGK IVFTQTKR+AD ++ A+ A +ALHGDISQ+QRERTL+GFR
Sbjct: 6 TLFSTLPQEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRD 65
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195
G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT RAGK+G+AIL++T+ Q
Sbjct: 66 GRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQ 125
Query: 196 RRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
R VR +E+D+GCKF + P +E E+S
Sbjct: 126 ARAVRIIEQDIGCKFTEL--PKIEVADEAS 153
>gi|360044772|emb|CCD82320.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 710
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 150/256 (58%), Gaps = 8/256 (3%)
Query: 1 MLAVGFEEDVELILENL-----PPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQ 54
ML +GF +DVE IL + K Q++LFSATMPSWV ++SR YL D+ L++ L+ Q
Sbjct: 253 MLDMGFSKDVESILSKIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQ 312
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSLALTSII 112
+ K + + A+ S+ LSD+I VY KG + IVF + K+DADE+S +
Sbjct: 313 ETKTSTNVTHLALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSG 372
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
LHG + Q +RE L FR GK+ L+ T+VAARGLD+PNVDL+I P D E ++
Sbjct: 373 DCHVLHGSVPQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYI 432
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRA + GT+I +T +R + +E G F +S P + D+ + E+++ T
Sbjct: 433 HRSGRTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAWGEEILKT 492
Query: 233 LNGVHPESVEFFTPTA 248
+ V + F P A
Sbjct: 493 FSNVPKSTWSTFVPLA 508
>gi|297787958|ref|XP_002862173.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
lyrata]
gi|297307387|gb|EFH38431.1| hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp.
lyrata]
Length = 283
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/139 (66%), Positives = 110/139 (79%)
Query: 81 LITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTV 140
L+ +AKGGK IVFTQTKRDAD +S AL EALHGDISQ QRERTL GFR G F +
Sbjct: 4 LVQEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFKI 63
Query: 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 200
LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGRAGK+G+AIL+++ Q R V+
Sbjct: 64 LVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 123
Query: 201 SLERDVGCKFEFVSPPVVE 219
+ER+VG +F + VE
Sbjct: 124 IIEREVGSRFTELPSIAVE 142
>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 794
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 150/256 (58%), Gaps = 8/256 (3%)
Query: 1 MLAVGFEEDVELILENL-----PPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQ 54
ML +GF +DVE IL + K Q++LFSATMPSWV ++SR YL D+ L++ L+ Q
Sbjct: 337 MLDMGFSKDVESILSKIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQ 396
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSLALTSII 112
+ K + + A+ S+ LSD+I VY KG + IVF + K+DADE+S +
Sbjct: 397 ETKTSTNVTHLALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSG 456
Query: 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
LHG + Q +RE L FR GK+ L+ T+VAARGLD+PNVDL+I P D E ++
Sbjct: 457 DCHVLHGSVPQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYI 516
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRA + GT+I +T +R + +E G F +S P + D+ + E+++ T
Sbjct: 517 HRSGRTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAWGEEILKT 576
Query: 233 LNGVHPESVEFFTPTA 248
+ V + F P A
Sbjct: 577 FSNVPKSTWSTFVPLA 592
>gi|403257506|ref|XP_003921357.1| PREDICTED: nucleolar RNA helicase 2-like [Saimiri boliviensis
boliviensis]
Length = 648
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 163/272 (59%), Gaps = 2/272 (0%)
Query: 22 QSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80
Q++LFSAT P WV +++KY+ + +DL+G + +K A ++ AI T + ++ D
Sbjct: 235 QTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAEVIGD 294
Query: 81 LITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFT 139
+I VY+ G+TI+F +TK++A E+S +++LHGDI Q QRE TL GFR G F
Sbjct: 295 VIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSFG 354
Query: 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199
VLVAT+VA LDIP VDL+I P D E+++HRSGRTGRAG+ G I + + +
Sbjct: 355 VLVATNVAEHPLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQL 414
Query: 200 RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA 259
+E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG
Sbjct: 415 VQVEQKAGIKFKRIGIPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVE 474
Query: 260 LAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
AA + RSLIN G+VT+ L
Sbjct: 475 ALAAAPARISGATSVDQRSLINSNVGFVTMIL 506
>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
Length = 622
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 153/258 (59%), Gaps = 12/258 (4%)
Query: 1 MLAVGFEEDVELILENL-----PPKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQ 54
ML +GF +DVE IL ++ K Q++LFSATMPSWV +SR YL N L++ L+ Q
Sbjct: 166 MLDMGFSKDVEKILADIYNNETSKKPQTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQ 225
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG--GKTIVFTQTKRDADEVSLALTSII 112
+ K + + A+ S+ LSD+I VY K + IVF + K+DADE LA +S++
Sbjct: 226 ETKASTNVTHLALLCPYESRAATLSDVIKVYCKSRESRCIVFCERKKDADE--LAASSVM 283
Query: 113 ASEA--LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGD+ Q +RE L FR GK+ L+ T+VAARGLD+P+VDL+I P D E
Sbjct: 284 PTDCHVLHGDVPQDKREFVLQKFRDGKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDVED 343
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRA + GT+I +T +R + +E G F +S P + D+ + E++
Sbjct: 344 YIHRSGRTGRADRSGTSICFYTYKERSMLSKIENMAGITFRRISAPTIHDITAAWGEEIS 403
Query: 231 ATLNGVHPESVEFFTPTA 248
T + + + F P A
Sbjct: 404 KTFSTIPKSTWSTFMPLA 421
>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 666
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 191/361 (52%), Gaps = 51/361 (14%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML GF+E VE IL +P Q+++ NIDLVG+ D +
Sbjct: 237 MLKFGFQEAVETILGWVPDGGQTLV---------------------NIDLVGDNDNHVPA 275
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
+ AI + + +L +++ ++A G+T+VFT+TK++ADE++ +L A ALHGD
Sbjct: 276 TVAHKAILAPSRDRIQVLENVLRLHAHDGQTLVFTETKQEADEIANSLPGQDA-RALHGD 334
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
+SQ R T+NGFR G LV TD+AARGLDI NV+L++ Y LP+D E+FVHR+GRTGR
Sbjct: 335 LSQGMRTSTMNGFRNGHVKTLVCTDIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGR 394
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AG+ GT I+ F + V ER KF +PP E ++ + E V L+ + +
Sbjct: 395 AGRSGTNIVFFDRNDTSDVLDFERRYKFKFAHAAPPRPEQMMTGALEDVNKQLSSLPKAN 454
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGF-SRPPSSRSLINHEQGWVTLQLTRDSAFSR 299
+ F AQ +IE++G L+AALA L GF S+ +S S++ T+++
Sbjct: 455 AQLFDEAAQAMIEQQGPGVLSAALALLCGFDSKKLTSLSMLTGRHRMQTVEV-------E 507
Query: 300 GFMSARSVMGFLS-------DVYPTAADEI------GKI-----HIIA---DDRVCIDTV 338
G +AR + L+ D++P ++ GKI H+ A D+ V + T
Sbjct: 508 GVQNARDLNRLLASFMDDRVDIHPVEGGKLVFDIPQGKIEALQAHLTASSPDEEVSVTTA 567
Query: 339 I 339
+
Sbjct: 568 V 568
>gi|6807980|emb|CAB70733.1| hypothetical protein [Homo sapiens]
Length = 399
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/255 (43%), Positives = 162/255 (63%), Gaps = 4/255 (1%)
Query: 40 KYLDNPL-NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQT 97
KY+ + +DLVG +K A ++ AI + + ++ D++ VY+ G+ I+F +T
Sbjct: 1 KYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCET 60
Query: 98 KRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157
K++ E+++ ++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VD
Sbjct: 61 KKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVD 120
Query: 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217
L+I P D E+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P
Sbjct: 121 LVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPS 180
Query: 218 VEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSS 276
D+++S + + +L V +V+FF P+AQRLIEEKG DALAAALA +SG S
Sbjct: 181 TMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEP 239
Query: 277 RSLINHEQGWVTLQL 291
RSLI ++G+VT+ L
Sbjct: 240 RSLITSDKGFVTMTL 254
>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
[Ciona intestinalis]
Length = 672
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 176/306 (57%), Gaps = 19/306 (6%)
Query: 1 MLAVGFEEDVELIL-------ENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLV 51
ML +GF VE IL PP Q++LFSAT P WV+ SRKY+ +++D +
Sbjct: 247 MLDMGFAPKVEEILGYAYTEEREGPP--QTLLFSATCPPWVRNTSRKYMRPSETVHVDTI 304
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADE--VSLAL 108
G + A ++ AI + + + +++ +Y+ + G+ ++FT TK+DA+E V AL
Sbjct: 305 GKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEAL 364
Query: 109 TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
A + LHGDI Q QRE TL +R G LVAT+VAARGLDIP +DL+I P+D
Sbjct: 365 QQQKA-QVLHGDIEQRQREITLKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTSPPSDI 423
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
++++HRSGRTGRAG+ G + + + ++ +ER G KF+ V PP +D++++S
Sbjct: 424 DSYIHRSGRTGRAGRTGVCVCFYKPREDMMIKKVERVAGIKFKMVGPPQPKDIVKASVND 483
Query: 229 VVATLNGVHPE-SVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRPPSSRSLINHEQG 285
+A+L+ V + + EF Q G +ALA+ALA ++G S SRSL+N +
Sbjct: 484 AIASLDLVDKKITAEFMKHAEQVASNHAGGAMEALASALAYMAGASD-LKSRSLLNAQAD 542
Query: 286 WVTLQL 291
+ T L
Sbjct: 543 FTTWHL 548
>gi|212721126|ref|NP_001132058.1| uncharacterized protein LOC100193470 [Zea mays]
gi|194693318|gb|ACF80743.1| unknown [Zea mays]
Length = 506
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 129/192 (67%), Gaps = 6/192 (3%)
Query: 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WV KLS ++L + +DLVGN+ K
Sbjct: 285 MLNMGFVDDVELILGKVEDATKVQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLK 344
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S I S AL
Sbjct: 345 ASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS---GLIHGSRAL 401
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 402 HGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 461
Query: 178 TGRAGKEGTAIL 189
TGRAG G A++
Sbjct: 462 TGRAGNTGVAVI 473
>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium
succinatutens YIT 12067]
Length = 529
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 166/269 (61%), Gaps = 7/269 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I+ +LP +RQ++LFSATMP + L++KY+ P N+ + +++E
Sbjct: 159 MLDMGFVDDIEEIMRSLPVERQTLLFSATMPRPILSLTKKYMKAPKNVTI--SKEELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y T K L L+ G K I+F +TK+ D++S+AL+S +E LHG
Sbjct: 217 LIEQYYFETK--DKIEGLCRLLDAEIDG-KLIIFCRTKKGVDDLSIALSSRGYMAEGLHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+R + FR+G VL+ATDVAARG+D+ N+ +I++++P DPE++VHR GRTG
Sbjct: 274 DLSQNQRDRVMKKFREGAVDVLIATDVAARGIDVDNITHVINFDIPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238
RAG G A+ T + R ++ +ER V K + P +V+E +Q+++ + V
Sbjct: 334 RAGNTGVAMTFITPREFRQLKLIERTVKTKIQRRQLPTAANVIERQRDQIISKMQTVLEL 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQL 267
+ + P A+ L+++ + +AAA +L
Sbjct: 394 NAYHDYMPIAESLLDDYSAEEVAAAALKL 422
>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
SK141]
Length = 619
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 165/269 (61%), Gaps = 7/269 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YLDNP + + + + +
Sbjct: 210 MLNMGFQEDVERILEDTPDRKQVALFSATMPNAIRRLSKQYLDNPAEVTV--KSERRTND 267
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + +K + ++ V IVF +TK + +EV+ L ++ A++G
Sbjct: 268 NITQRFLLIPHRAKMDAFTRILEVINYDA-IIVFCRTKHETEEVAETLRDRGFSAAAING 326
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 327 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTG 386
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL T +RR +RS+ER + E + P V++V E E+ ++ N +
Sbjct: 387 RAGRSGEAILFVTPRERRMLRSIERVTNARLEEMDLPSVDEVNEKRKEKFAQSITNSMDN 446
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALA 265
+ +FF ++ E+ D +AAALA
Sbjct: 447 KQADFFRTLVRKYSEDNNAAMDDIAAALA 475
>gi|423721477|ref|ZP_17695659.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365528|gb|EID42823.1| DEAD/DEAH box helicase family protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 465
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 179/311 (57%), Gaps = 13/311 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P KRQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIDDIEAILSNVPEKRQTLLFSATMPEPIRRIAERFMNKPQIVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVQEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGK G A+ T + + ++ER K E + PP +++ LE + E+++AT
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHNIERTTKRKMERMKPPTLDEALEGQQRIAVEKLIAT--- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295
V E++ F+ A+ L+EE + +L AA ++ ++ P + + E+ + ++ +
Sbjct: 390 VETENLSFYKRAAEELLEEHDSVSLVAACIKM--LTKEPDTTPVQLTEEPPLPVKREKKR 447
Query: 296 AFSRGFMSARS 306
A G RS
Sbjct: 448 ANRSGSQRERS 458
>gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
gi|336236996|ref|YP_004589612.1| DEAD/DEAH box helicase [Geobacillus thermoglucosidasius C56-YS93]
gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
gi|335363851|gb|AEH49531.1| DEAD/DEAH box helicase domain protein [Geobacillus
thermoglucosidasius C56-YS93]
Length = 465
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 179/311 (57%), Gaps = 13/311 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P KRQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIDDIEAILSNVPEKRQTLLFSATMPEPIRRIAERFMNEPQIVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVQEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGK G A+ T + + ++ER K E + PP +++ LE + E+++AT
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHNIERTTKRKMERMKPPTLDEALEGQQRIAVEKLIAT--- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295
V E++ F+ A+ L+EE + +L AA ++ ++ P + + E+ + ++ +
Sbjct: 390 VETENLSFYKRAAEELLEEHDSVSLVAACIKM--LTKEPDTTPVQLTEEPPLPVKREKKR 447
Query: 296 AFSRGFMSARS 306
A G RS
Sbjct: 448 ANRSGSQRERS 458
>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 619
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 165/269 (61%), Gaps = 7/269 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YLDNP + + + + +
Sbjct: 210 MLNMGFQEDVERILEDTPDRKQVALFSATMPNAIRRLSKQYLDNPAEVTV--KSERRTND 267
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + +K + ++ V IVF +TK + +EV+ L ++ A++G
Sbjct: 268 NITQRFLLIPHRAKMDAFTRILEVINYDA-IIVFCRTKHETEEVAETLRDRGFSAAAING 326
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 327 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTG 386
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL T +RR +RS+ER + E + P V++V E E+ ++ N +
Sbjct: 387 RAGRSGEAILFVTPRERRMLRSIERVTNARLEEMDLPSVDEVNEKRKEKFAQSITNSMDN 446
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALA 265
+ +FF ++ E+ D +AAALA
Sbjct: 447 KQADFFRTLVRKYSEDNNAAMDDIAAALA 475
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 164/272 (60%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P KRQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIDDIEAILSNVPEKRQTLLFSATMPEPIRRIAERFMNEPHIVKVKAK--EMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVQEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGK G A+ T + + ++ER K E + PP +++ LE + E++VAT
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHNIERTTKRKMERMKPPTLDEALEGQQRIAVEKLVAT--- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
V E++ F+ A+ L+EE + +L AA ++
Sbjct: 390 VESENLSFYKRAAEELLEEHDSVSLVAACIKM 421
>gi|354557785|ref|ZP_08977043.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550579|gb|EHC20016.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 530
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 166/274 (60%), Gaps = 12/274 (4%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF ED+E IL+ +PP+ RQ MLFSATMP ++KL++ Y+ +P ++ + ++DE
Sbjct: 160 MLDMGFVEDIEHILKEVPPEDRQVMLFSATMPLAIRKLAQHYMKDPKSVAV--SRDELTV 217
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ T K L +I + G+ I+F +TKR DE+ +L + ++ALH
Sbjct: 218 PLIEQVFYETRDKIKVDALCRIIDM-EDIGQAIIFCRTKRGVDELVASLEARGYFADALH 276
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DPE++VHR GRT
Sbjct: 277 GDLSQQQRDRVMKRFRDGKIELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRT 336
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLN 234
GRAG++G AI + +S + R +R +ER + + P + DV E A EQ++ L
Sbjct: 337 GRAGRKGQAITLISSKEYRQLRLIERLIKTRIIRKELPSLADVSERQADNLKEQLIKLLQ 396
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
H + + P L+EE + +AAA Q +
Sbjct: 397 KDH---LATYRPIVSALVEEYDSIDVAAAALQFA 427
>gi|403331283|gb|EJY64580.1| DEAD/DEAH box helicase family protein [Oxytricha trifallax]
Length = 1264
Score = 181 bits (459), Expect = 5e-43, Method: Composition-based stats.
Identities = 96/230 (41%), Positives = 146/230 (63%), Gaps = 6/230 (2%)
Query: 1 MLAVGFEEDVELIL----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQD 55
ML +GF+EDV+ IL + Q LFSAT+P WV+ +++++L +DL +
Sbjct: 589 MLKLGFKEDVDKILSIIRDQCREDIQICLFSATIPPWVRDIAQEHLRQGYTMVDLAKDLK 648
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE-VSLALTSIIAS 114
K A+ ++ AI+ ++ DL+ +Y GG++IVFT+TK DA+ +S S
Sbjct: 649 NKTAKRVRHIAINCPFYKTEQVILDLLMMYGTGGRSIVFTKTKSDANSLISSDRFSKNDI 708
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ +HGDI QH RE TL F++G+ VLVATDVA+RGLDIPNV+LI+ E P DPET++HR
Sbjct: 709 QVMHGDIPQHSREMTLRAFKEGRLKVLVATDVASRGLDIPNVELIVQTEPPQDPETYIHR 768
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
+GRT RAGKEGT I+++ + + + +E+ G +FE +S P +V+ +
Sbjct: 769 AGRTARAGKEGTCIVLYQNKTQYMMEQIEQRAGIQFEQMSAPSPSEVMNA 818
>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
Length = 623
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 164/269 (60%), Gaps = 7/269 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YL NP + + + + +
Sbjct: 210 MLNMGFQEDVERILESTPDRKQVALFSATMPNAIRRLSKQYLHNPAEVTV--KSERRTND 267
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK + +K + ++ V IVF +TK + +EV+ AL ++ A++G
Sbjct: 268 NIKQRFLLIPHRAKMDAFTRILEVITYDA-IIVFCRTKHETEEVAEALRDRGYSAAAING 326
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 327 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTG 386
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHP 238
RAG+ G AIL T +RR +RS+ER + E + P V++V E E+ A +
Sbjct: 387 RAGRSGEAILFVTPRERRMLRSIERVTNARLEEMDLPSVDEVNEKRKEKFAQAITQSMDN 446
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALA 265
+ +FF ++ E+ D +AAALA
Sbjct: 447 KQADFFRNLVRKYSEDNNVAMDDIAAALA 475
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 16/336 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +Q++LFSATMP + KL++KYL NP +I +V E
Sbjct: 159 MLNMGFIEDIEFILDKTPKDKQTLLFSATMPDPILKLTKKYLKNPEHIKVV--HKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEV--SLALTSIIASEALH 118
I+ K ILS L+ +Y +VF TK+ DEV SL +A +ALH
Sbjct: 217 TIEQIYFEVKEAHKIEILSRLLDIY-NPKLALVFCNTKKKVDEVVSSLQARGYLA-DALH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QR+R + FR G VLVATDVAARG+D+ +V+++ +Y++P D E +VHR GRT
Sbjct: 275 GDMKQNQRDRVMAKFRSGTIDVLVATDVAARGIDVEDVEIVFNYDVPQDEEYYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVH 237
GRAG+EG A + +R ++R K + P + DV ES +++ + ++
Sbjct: 335 GRAGREGKAFTFVSGKDIYKLRDIQRYTKTKIKLQKIPTLHDVEESRTSKIIDRIKESIN 394
Query: 238 PESVEFFTPTAQRLIEEKGTD-ALAAALAQL-----SGFSRPPSSRSLINHEQGWVTLQL 291
++E ++ +R+I+++ T +AAAL ++ + + E G V L +
Sbjct: 395 EGNLEKYSDIIERIIDDEYTSLDVAAALLKIVMSEDKRYDEIEDAFEGTGAEPGMVRLFV 454
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
+S R ++G ++D D IG+I I
Sbjct: 455 NVGKNHK---ISPRDIVGAIADKVKLPGDLIGRIDI 487
>gi|60551600|gb|AAH91427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
Length = 380
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 154/250 (61%), Gaps = 18/250 (7%)
Query: 44 NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDAD 102
NP+N+ L AI + + ++ D++ VY+ G+ I+F +TK++
Sbjct: 2 NPINLHL---------------AIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVT 46
Query: 103 EVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162
E+++ ++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I
Sbjct: 47 EMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQS 106
Query: 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
P D E+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D++
Sbjct: 107 SPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLV 166
Query: 223 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLIN 281
+S + + +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI
Sbjct: 167 KSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASS-FEPRSLIT 225
Query: 282 HEQGWVTLQL 291
++G+VT+ L
Sbjct: 226 SDKGFVTMTL 235
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 142/229 (62%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P +RQ+ LFSATMP + +L++KY +P++I +V +
Sbjct: 159 MLDMGFREDIETILSNVPEERQTALFSATMPKAILELTKKYQKDPVHIKVV--RKTLTVS 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK Y I T ++K +L+ L+ VY T+VFT TK+ ADE+ +L + +++LHG
Sbjct: 217 NIKQYYIETRKSNKLEVLTRLLDVY-NPKLTVVFTNTKKGADELVSSLQARGYGADSLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FR G +LVATDVAARG+DI +V+ +I+YELP D E +VHR GRTG
Sbjct: 276 DLKQVQRDIVMDKFRAGTIDILVATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+EG A + R ++ +ER K P V DV E Q
Sbjct: 336 RAGREGIAFSFAFGREMRKLKDIERYTKSKIVKHDIPSVNDVEEKKVSQ 384
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 13/271 (4%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF ED+E IL +PP+ RQ MLFSATMP +KKL++ Y+ P ++ + ++DE
Sbjct: 161 MLDMGFVEDIETILRQVPPEERQMMLFSATMPIEIKKLAQNYMHQPKSVAV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ T K L +I + G+ I+F +TKR DE+ AL + ++ALH
Sbjct: 219 PLIEQVFYETREKIKVDALCRIIDM-EDIGQAIIFCRTKRGVDELVAALEARGYFADALH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DPE++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLN 234
GRAG++G AI + +S + R +R +ER + + P + DV E AE Q+V +
Sbjct: 338 GRAGRKGQAITLVSSREYRQLRLIERLIKTRIVRKELPTLADVSERQAENLKNQLVKIIQ 397
Query: 235 GVHPESVEFFTPTAQRLIEE-KGTDALAAAL 264
H + + L+EE D AAAL
Sbjct: 398 RSH---LGTYRSIVGSLLEEYDSVDVAAAAL 425
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ ILE +P ++Q++LFSATMP + L+ KYL NPL+I Q
Sbjct: 159 MLNMGFREDIDTILEKVPEEKQTILFSATMPKEILDLTSKYLKNPLHIKAAHKQ--MTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + + +SK ILS LI G ++VF TKR DE++ +L S ++EALHG
Sbjct: 217 SIEQFYLEVSQSSKLEILSRLIDA-NNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR R + FR+G+ +L+ATDVAARG+D+ NV+ + +Y+LP+D E +VHR GRTG
Sbjct: 276 DMKQDQRNRVMTKFRKGQIDILIATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAGK G + + ++ ++R + PP DV E
Sbjct: 336 RAGKTGKSFTFVVGREIHKLKDIQRYTKSTIHLIKPPTAMDVEE 379
>gi|375007039|ref|YP_004980670.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359285886|gb|AEV17570.1| DEAD-box ATP-dependent RNA helicase cshA [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 467
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ T + + +ER K E + PP +++ LE + LN V
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVET 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 393 ENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
gi|448236523|ref|YP_007400581.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
gi|445205365|gb|AGE20830.1| DEAD-box ATP-dependent RNA helicase [Geobacillus sp. GHH01]
Length = 467
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ T + + +ER K E + PP +++ LE + LN V
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVET 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 393 ENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
gi|81675946|sp|Q5L3G9.1|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
Length = 467
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ ++++ P + + E
Sbjct: 156 MLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ T + + +ER K E + PP +++ LE + LN V
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVET 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 393 ENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|358446581|ref|ZP_09157126.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
gi|356607542|emb|CCE55468.1| putative ATP-dependent RNA helicase [Corynebacterium casei UCMA
3821]
Length = 675
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 166/276 (60%), Gaps = 8/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P ++Q LFSATMP+ +++LS++YL+NP + + Q + +
Sbjct: 215 MLNMGFQEDVERILADTPEEKQVALFSATMPNGIRRLSKQYLNNPAEVTVKSQQ--RTND 272
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK + T +K + ++ V IVF +TK + +EV+ L + A++G
Sbjct: 273 NIKQRFLLTAHRAKLDAFTRILEVTDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAING 331
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 332 DIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTG 391
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T +RR +RS+ER + E + P V++V E + + V +
Sbjct: 392 RAGRTGEAILFVTPRERRMLRSIERVTNARLEEMELPTVDEVNAKRKENFASQITEVLGD 451
Query: 240 S-VEFFTPTAQRLIEEKGT--DALAAALA-QLSGFS 271
+E F ++ E D +AAALA +L G S
Sbjct: 452 GQMELFRGLVRKYSETNNVAMDDIAAALAVKLQGGS 487
>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 565
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/255 (37%), Positives = 150/255 (58%), Gaps = 5/255 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ ILE +P RQ++LFSATMP + +L++KY NP++I + E
Sbjct: 159 MLNMGFREDIDTILEKVPEDRQTILFSATMPKEILELTKKYQKNPVHIKIA--HKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + ++K +LS LI ++VF TK+ DE++ +L S ++EALHG
Sbjct: 217 SIEQYYLEVKESAKLEVLSRLIDT-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R++ +N FR+G F +L+ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTG
Sbjct: 276 DMRQEHRDKVMNLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAG+ G A + +R ++R + PP + +V E ++ L +
Sbjct: 336 RAGRTGKAFTFIYGREMYKLRDIQRYTKSTIIPMKPPSLNEVEEKKMSNILKALKENLKD 395
Query: 239 ESVEFFTPTAQRLIE 253
ESV F +R I+
Sbjct: 396 ESVSKFASHIERFID 410
>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
Length = 467
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ +++++P + + E
Sbjct: 156 MLNMGFIEDIEAILRHVPTERQTLLFSATMPDPIRRIAERFMNDPELVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ T + + +ER K E + PP + + LE + LN
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEA 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 393 ENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|138893877|ref|YP_001124330.1| DEAD/DEAH box helicase [Geobacillus thermodenitrificans NG80-2]
gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
thermodenitrificans NG80-2]
Length = 467
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ +++++P + + E
Sbjct: 156 MLNMGFIEDIEAILRHVPTERQTLLFSATMPDPIRRIAERFMNDPELVKV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K IL+ L+ + A IVF +TKR DE++ AL A+E +HG
Sbjct: 214 NIQQYYLEVHEKKKFDILTRLLDIQAPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ T + + +ER K E + PP + + LE + LN
Sbjct: 333 RAGKTGVAMTFVTPREIGQLHHIERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEA 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ F+ A+ L+EE D++ A L +R P +
Sbjct: 393 ENLSFYKRAAEELLEEH--DSVTIVAACLKMLTREPDT 428
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 139/226 (61%), Gaps = 4/226 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ILEN+P +RQ+ FSATMP + +L++KY + P +I +V + E E
Sbjct: 159 MLDMGFREDIETILENVPEERQTTFFSATMPKAILELTKKYQNEPEHIKVV--RKELTVE 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK Y I T A++K +LS LI VY ++VF TK+ ADE+ L ++ALHG
Sbjct: 217 NIKQYYIETRASNKIEVLSRLIDVYNPK-LSVVFCNTKKGADELVGELQGRGYFADALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ + +++LP D E +VHR GRTG
Sbjct: 276 DLKQVQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
RAG+EG + R ++ +ER K E P V DV E
Sbjct: 336 RAGREGLSFSFVYGRDMRKMKDIERYTKSKLEKHPIPTVGDVEEKK 381
>gi|376260079|ref|YP_005146799.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373944073|gb|AEY64994.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 564
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 164/283 (57%), Gaps = 17/283 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ ILE +P RQ++LFSATMP + +L++KY +P++I + E
Sbjct: 159 MLNMGFREDIDTILEKVPEDRQTILFSATMPKEILELTKKYQKDPVHIKIA--HKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + ++K +LS LI ++VF TK+ DE++ +L S ++EALHG
Sbjct: 217 SIEQYYLEVKESAKLEVLSRLIDT-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R++ ++ FR+G F +L+ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTG
Sbjct: 276 DMRQEHRDKVMSLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAG+ G A + + +R ++R + PP + +V E ++ TL +
Sbjct: 336 RAGRTGKAFTFISGREMYKLRDIQRYTKSTIVPMKPPSLNEVEEKKMLNILKTLKENLKD 395
Query: 239 ESVEFFTPTAQRLI-------EEKGTD-----ALAAALAQLSG 269
ES+ F +R I EE+G + +AAAL ++ G
Sbjct: 396 ESISKFVSHIERFIDTINNESEEQGENFVTSLDIAAALLKMYG 438
>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
ammoniagenes DSM 20306]
Length = 658
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 166/276 (60%), Gaps = 8/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P ++Q LFSATMP+ +++LS+KYL++P + + Q + +
Sbjct: 215 MLNMGFQEDVERILADTPEEKQVALFSATMPNSIRRLSKKYLNSPAEVTVKSEQ--RTND 272
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK + T +K + ++ V IVF +TK + +EV+ L + A++G
Sbjct: 273 NIKQRFLLTAHRAKLDAFTRILEVTDYDA-MIVFCRTKHETEEVAEKLRDAGYNAAAING 331
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 332 DIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNFDIPNDTESYVHRIGRTG 391
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T +RR +RS+ER + E + P V++V E + + V +
Sbjct: 392 RAGRTGEAILFVTPRERRMLRSIERVTNARLEEMELPTVDEVNAKRKENFASQITEVLGD 451
Query: 240 S-VEFFTPTAQRLIEEKGT--DALAAALA-QLSGFS 271
+E F ++ E D +AAALA +L G S
Sbjct: 452 GQMELFRGLVRKYSENNNVAMDDIAAALAVKLQGGS 487
>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
Length = 678
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 163/274 (59%), Gaps = 8/274 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YL++P + + + + +
Sbjct: 209 MLNMGFQEDVERILEDTPEEKQVALFSATMPNSIRRLSKQYLNDPAEVTV--KSERRTND 266
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T K + ++ V IVF +TK + +EV+ +L + A++G
Sbjct: 267 NITQRYLLTPHRQKMDAFTRILEVIEYDA-IIVFCRTKHETEEVADSLRDAGYNAAAING 325
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + +++Y++PND E++VHR GRTG
Sbjct: 326 DIAQQQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTG 385
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAG+ G AIL T +RR +RS+ER + E + P + V E E+ +A + +
Sbjct: 386 RAGRTGEAILFVTPRERRMLRSIERVTNARLEEMDLPSADAVNEKRKEKFLAKIGESLGD 445
Query: 239 ESVEFFTPTAQRL--IEEKGTDALAAALA-QLSG 269
+ EFF + D +AAALA QL G
Sbjct: 446 KQFEFFRDMVREYSAANNVAMDDIAAALAVQLQG 479
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 149/237 (62%), Gaps = 4/237 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE++P +RQ+ LFSAT+P +++L+++YL P+ I + + +
Sbjct: 166 MLDMGFIEDVEWILEHVPRERQTALFSATIPPRIRQLTQRYLRAPVTIAI--HPERVTVP 223
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I A +K LS ++ Y I+F +TK ADE++ L S+ A+EA+HG
Sbjct: 224 SIAQTVYEVAAHAKLEALSRILD-YEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHG 282
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ R+R + FR G+ +L+ATDVAARGLDIP V +I++++P+DPE++VHR GRTG
Sbjct: 283 DLSQAMRDRAMQRFRAGQVDLLIATDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTG 342
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RAG GTAI + +R +R++ER +G + P E++ E + A+L+ V
Sbjct: 343 RAGATGTAITLIEPRERWLLRTIERAIGQRLIPKRIPTREEIARRQRELLGASLSEV 399
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 165/283 (58%), Gaps = 17/283 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ ILE +P RQ++LFSATMP + +L++KY +P++I + E
Sbjct: 159 MLNMGFREDIDTILEKVPEDRQTILFSATMPKEILELTKKYQKDPVHIKIA--HKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + ++K +LS LI ++VF TK+ DE++ +L S ++EALHG
Sbjct: 217 SIEQYYLEVKESAKLEVLSRLIDT-NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R++ ++ FR+G F +L+ATDVAARG+D+ +V+ + +Y+LPND E +VHR GRTG
Sbjct: 276 DMRQEHRDKVMSLFRKGNFDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G A + + +R ++R + PP + +V E ++ TL + +
Sbjct: 336 RAGRTGKAFTFISGREMYKLRDIQRYTKSTIVAMKPPSLNEVEEKKMLNILKTLKDNLKD 395
Query: 239 ESVEFFTPTAQRLI-------EEKGTD-----ALAAALAQLSG 269
+S+ F +R I EE+G + +AAAL ++ G
Sbjct: 396 DSISKFVSHIERFIDTINNESEEQGENFVTSLDVAAALLKMYG 438
>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
700975]
Length = 669
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 161/274 (58%), Gaps = 8/274 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LS++YL+NP + + + + +
Sbjct: 218 MLNMGFQEDVERILEDTPEDKQVALFSATMPNSIRRLSKQYLNNPAEVTV--KSERRTND 275
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T K + ++ V IVF +TK ++V+ +L + A++G
Sbjct: 276 NITQRFLLTPHRHKMDAFTRILEVIDYDA-IIVFCRTKHATEDVADSLKEAGYNAAAING 334
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + +++Y++PND E++VHR GRTG
Sbjct: 335 DIAQQQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVVNYDIPNDTESYVHRIGRTG 394
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T +RR +RS+ER + E + P ++V E+ A++ +
Sbjct: 395 RAGRTGEAILFVTPRERRMLRSIERVTNARLEEMDLPTADEVNAKRKEKFFASIGASQQD 454
Query: 240 -SVEFFTPTAQRL--IEEKGTDALAAALA-QLSG 269
+FF + E D +AAALA QL G
Sbjct: 455 KQFDFFRDMVREYSAAENVAMDDIAAALAVQLQG 488
>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 718
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 152/234 (64%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P K+Q LFSATMP+ +++LS++YLD+P + + + +
Sbjct: 265 MLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEVTV--KAETRTNT 322
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +E++ L + +++A++G
Sbjct: 323 NISQRYLNVAHRNKLDALTRILEV-TEFEAMIIFVRTKYETEELAEKLRARGFSAQAING 381
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ R G+ +LVATDVAARGLD+ + +++Y++P+D E+++HR GRTG
Sbjct: 382 DIAQQQRERTVDQLRDGRLDILVATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTG 441
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+ G AIL T +RR +RS+ER E + P V++V ES E+ ++
Sbjct: 442 RAGRTGEAILFVTPRERRMLRSIERVTNATLEEMQLPTVDEVNESRKEKFADSI 495
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 161/271 (59%), Gaps = 13/271 (4%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E IL+ +P + RQ MLFSATMP +KKL++ Y+ P ++ + ++DE
Sbjct: 168 MLDMGFVDDIETILKQVPKEERQVMLFSATMPPEIKKLAQNYMSQPKSVAV--SRDELTV 225
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ T K L +I + G+ I+F +TKR DE+ AL + ++ALH
Sbjct: 226 PLIEQVFYETRDKIKVDALCRIIDM-EDIGQAIIFCRTKRGVDELVAALEARGYFADALH 284
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DPE++VHR GRT
Sbjct: 285 GDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRT 344
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLN 234
GRAG++G AI + +S + R +R +ER + + P + DV E AE Q+V L
Sbjct: 345 GRAGRKGQAITLVSSREYRQLRLIERLIKTRIVRKELPTLADVSERQAENLKNQLVKILQ 404
Query: 235 GVHPESVEFFTPTAQRLIEE-KGTDALAAAL 264
H + + L+EE D AAAL
Sbjct: 405 RSH---LGTYRSIVGSLLEEYDSMDVAAAAL 432
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 161/271 (59%), Gaps = 13/271 (4%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E IL+ +P + RQ MLFSATMP +KKL++ Y+ P ++ + ++DE
Sbjct: 168 MLDMGFVDDIETILKQVPKEERQVMLFSATMPPEIKKLAQNYMSQPKSVAV--SRDELTV 225
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ T K L +I + G+ I+F +TKR DE+ AL + ++ALH
Sbjct: 226 PLIEQVFYETRDKIKVDALCRIIDM-EDIGQAIIFCRTKRGVDELVAALEARGYFADALH 284
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DPE++VHR GRT
Sbjct: 285 GDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRT 344
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLN 234
GRAG++G AI + +S + R +R +ER + + P + DV E AE Q+V L
Sbjct: 345 GRAGRKGQAITLVSSREYRQLRLIERLIKTRIVRKELPTLADVSERQAENLKNQLVKILQ 404
Query: 235 GVHPESVEFFTPTAQRLIEE-KGTDALAAAL 264
H + + L+EE D AAAL
Sbjct: 405 RSH---LGTYRSIVGSLLEEYDSMDVAAAAL 432
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 158/254 (62%), Gaps = 16/254 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL ++P +RQ++ FSATMP + +L+RKY +P I ++ + E E
Sbjct: 160 MLDMGFRDDIEKILSSMPIERQTVFFSATMPKPILELTRKYQTDPEIIKVL--RKELTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K ++S LI ++ + +++F TKR DEV+ LT+ I +EALHG
Sbjct: 218 NISQLYFDVRSGLKTDLISRLINLH-QYKLSVIFCNTKRVTDEVTEELTAKGIPAEALHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR + +N FR+G +VLVATDVAARG+D+ NV+ + +Y+LP D E +VHR GRTG
Sbjct: 277 DLSQAQRTKVMNKFRKGHCSVLVATDVAARGIDVENVEAVFNYDLPLDEENYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRT--VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL---- 233
RAG+ GTAI F S +R + +R LER + E +PP V+ +++ +Q+ +
Sbjct: 337 RAGRSGTAI-SFVSGRRDSGRLRDLERFIKTTIEKAAPPSVDQLIQMKKDQLTKDIHRQL 395
Query: 234 -----NGVHPESVE 242
N ++ ++VE
Sbjct: 396 AKEEDNSIYEQAVE 409
>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 718
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 152/234 (64%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P K+Q LFSATMP+ +++LS++YLD+P + + + +
Sbjct: 265 MLNMGFQEDVERILEDTPDKKQVALFSATMPNAIRRLSQQYLDDPYEVTV--KAETRTNT 322
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +E++ L + +++A++G
Sbjct: 323 NISQRYLNVAHRNKLDALTRILEV-TEFEAMIIFVRTKYETEELAEKLRARGFSAQAING 381
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ R G+ +LVATDVAARGLD+ + +++Y++P+D E+++HR GRTG
Sbjct: 382 DIAQQQRERTVDQLRDGRLDILVATDVAARGLDVDRISHVLNYDIPHDTESYIHRIGRTG 441
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+ G AIL T +RR +RS+ER E + P V++V ES E+ ++
Sbjct: 442 RAGRTGEAILFVTPRERRMLRSIERVTNATLEEMQLPTVDEVNESRKEKFADSI 495
>gi|403387074|ref|ZP_10929131.1| ATP-dependent RNA helicase (superfamily II) [Clostridium sp. JC122]
Length = 546
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 186/358 (51%), Gaps = 39/358 (10%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ELI+ NL +RQ++LFSATMP +K L++ Y+ + + Q +++
Sbjct: 158 MLNMGFIEDIELIISNLKKERQTLLFSATMPKAIKSLAKNYMKSDAKHIAIAKQSLTVSK 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK + K L ++ V A I+F +TKR DE+ AL S E +HG
Sbjct: 218 -IKQFYFEVGQKDKLEALCRILDVDAPKS-AILFCKTKRGVDELVSALQSKGYIVEGMHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR TL F+ G L+ATDVAARG+D+ ++ +I+Y+LP D E++VHR GRTG
Sbjct: 276 DMKQLQRLNTLKKFKTGNLNYLIATDVAARGIDVEDITHVINYDLPQDTESYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RA KEGTA + + +R +E K E P + D+ S +E ++ ++ E
Sbjct: 336 RANKEGTAYSFASRREMSMIRQIENVTKSKMEKKQLPTLNDIYASKSESILESVKATLEE 395
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQ----LTRD 294
S E F T++ LI+E G + + A+L ++ F + +N+E TL+ +RD
Sbjct: 396 NSYESFIQTSKDLIDEFGAEDVTASLMKIL-FDKE------LNYEYTQDTLKCEESFSRD 448
Query: 295 SA--------FSRGF----------------MSARSVMGFLSDVYPTAADEIGKIHII 328
S F+R F +SA ++ FL + + E+G+I I+
Sbjct: 449 SNRRDSNRRDFNRDFNKDTARLFLSVGRLDKVSAIDLVKFLDNTAGVKSKELGRIDIL 506
>gi|403238270|ref|ZP_10916856.1| DEAD/DEAH box helicase domain-containing protein [Bacillus sp.
10403023]
Length = 496
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 168/281 (59%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P +RQ++LFSATMP +++++ +++ NP + + E
Sbjct: 156 MLNMGFIEDIEAILKGVPDERQTLLFSATMPGPIQRIAERFMKNPKVVKV--KTKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K +L+ L+ + + I+F +TKR DE+S ALT A+E +HG
Sbjct: 214 NIQQYYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALTLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRISVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGK G A+ T + ++++E K + + PP +++ LE + E++V+
Sbjct: 333 RAGKTGMAMTFVTPREIGQLKNVENTTKRKMDKMKPPTLDEALEGQQKITMEKIVSM--- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+ ++ ++T A+ L+EE + ++ AA +L ++ P S
Sbjct: 390 IESNNLSYYTRIAEELLEEHDSVSVVAAAIKL--MTKEPDS 428
>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 526
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 160/276 (57%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+N P +RQ++LFSATMP +++L+ +Y+ +P+ I + Q
Sbjct: 160 MLDMGFIEDIEKILQNTPAERQTLLFSATMPPEIRRLAGRYMRDPITISVTPQQ--LTVP 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K L+ ++ + + I F +TK+ DE+ AL + +E +HG
Sbjct: 218 QIDQYFCEVRPSFKTEALTRILDI-ENVERGICFCRTKKGVDELVEALQARGYQAEGIHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QR R ++ F++G +LVATDVAARGLDI +V + +Y++P DPE++VHR GRTG
Sbjct: 277 DMNQAQRNRVMSRFKEGYIELLVATDVAARGLDISDVTHVFNYDIPQDPESYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ GTAI + T + +R +ER + + + P + DV E EQ+ L + E
Sbjct: 337 RAGRTGTAITLVTPREFPQLRLIERVIKARLQRRPVPTLSDVAEKQREQLKERLIKILEE 396
Query: 240 SV--EFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273
EF L E +D +AAAL +SG +P
Sbjct: 397 DKLGEFRELAEDLLAEYDPSDLVAAALKLVSGEGKP 432
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 160/271 (59%), Gaps = 13/271 (4%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF ED+E IL+ +P + RQ MLFSATMP +KKL++ Y+ P ++ + ++DE
Sbjct: 161 MLDMGFVEDIETILKQVPKEERQVMLFSATMPPEIKKLAQNYMHQPKSVAV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ K L +I + G+ I+F +TKR DE+ AL + ++ALH
Sbjct: 219 PLIEQVFYEARDKIKVDALCRIIDM-EDIGQAIIFCRTKRGVDELVAALEARGYFADALH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DPE++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLN 234
GRAG++G AI + +S + R +R +ER + + P + DV E AE Q+V L
Sbjct: 338 GRAGRKGQAITLVSSREYRQLRLIERLIKTRIIRKELPTLADVSERQAENLKNQLVKILQ 397
Query: 235 GVHPESVEFFTPTAQRLIEE-KGTDALAAAL 264
H + + L+EE D AAAL
Sbjct: 398 RSH---LGTYRSIVGSLLEEYDSMDVAAAAL 425
>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
Length = 471
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 163/272 (59%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ ++++NP + + E
Sbjct: 159 MLNMGFVEDIEAILSHVPTERQTLLFSATMPEPIRRIAERFMNNPELVRVKAK--EMTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y I K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 217 NIEQYYIEIQEKKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 276 DLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNG 235
RAGK G AI T + + +E+ K E + PP +++ LE ++ E+++AT+
Sbjct: 336 RAGKTGMAITFVTPREIGQLHHIEKTTKRKMERMKPPTLDEALEGQQRAAIEKLLATIEH 395
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
++ F+ A+ L+EE + +L AA ++
Sbjct: 396 ---NNLAFYKRAAEELLEEHDSVSLVAACIKM 424
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ+ LFSATMP + +L++KY P++I +V + E
Sbjct: 159 MLDMGFREDIETILSSTPQERQTSLFSATMPKAILELTQKYQKEPVHIKVV--RKELTVN 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHG 119
IK + I T ++K +L+ LI VY T+VFT TK+ ADE VS +++LHG
Sbjct: 217 NIKQFYIETRKSNKLEVLTRLIDVY-NPKLTVVFTNTKKGADELVSDLQARGYGADSLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ +I+YELP D E +VHR GRTG
Sbjct: 276 DLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG++G A + R ++ +ER K S P V DV + Q
Sbjct: 336 RAGRDGIAFSFVFGREMRKLKDIERYTKSKVMKHSIPTVNDVEQKKIGQ 384
>gi|406663218|ref|ZP_11071284.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
gi|405552735|gb|EKB48086.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
Length = 570
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 5/232 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL + P +RQ++ FSATMP + L+RKY DNP + ++ + E E
Sbjct: 160 MLDMGFRDDIENILSDCPEERQTVFFSATMPKPIMDLTRKYQDNPEIVKVL--RKELTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K ++S LI + + ++VF TKR DEV+ L + I +EALHG
Sbjct: 218 NISQVYYEVKPSLKLELMSRLINLN-QFQLSVVFCNTKRVTDEVTEELIARGITAEALHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR + +N FR+G +VLVATDVAARG+D+ NV+ + +++LP D E +VHR GRTG
Sbjct: 277 DLSQAQRTKVMNKFRKGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRR-TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
RAGK G AI T + +R LE+ + ++PP V D++E EQ++
Sbjct: 337 RAGKSGAAISFVTGRKDMFRIRDLEKFIKTSISKMAPPSVADLIELKKEQLI 388
>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
Length = 580
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 156/261 (59%), Gaps = 13/261 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+ +P KRQ++ FSATM + L+RKY +NP I + + E +
Sbjct: 160 MLDMGFRDDIEAILQEMPEKRQTVFFSATMAKPILDLTRKYQNNPEIIKVA--KKELTVD 217
Query: 61 GIKLYAISTTATSKRTILSDLITV--YAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
I+ + K +++ L+ V YA ++VF TKR DE + AL S I +EAL
Sbjct: 218 RIEQVFYEVKPSLKLELMARLMNVNNYAL---SVVFCNTKRMTDEATEALGSRGILAEAL 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QR++ +N FR+G TVLVATDVAARG+D+ NV+ + +++LP D E++VHR GR
Sbjct: 275 HGDLSQAQRDKVMNKFRKGLCTVLVATDVAARGIDVDNVEAVFNFDLPLDDESYVHRIGR 334
Query: 178 TGRAGKEGTAILMFTSSQRR--TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
TGRAGK G AI F + +R +R LER + PP V D++E Q V ++
Sbjct: 335 TGRAGKSGKAI-NFVTGRRDFGKIRDLERFTKASIAKMDPPSVSDLIELKKAQFVKDVHT 393
Query: 236 V--HPESVEFFTPTAQRLIEE 254
V E + F T +L+ E
Sbjct: 394 VISKEEDNQIFEETVGQLLTE 414
>gi|365869382|ref|ZP_09408929.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414582556|ref|ZP_11439696.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|420876743|ref|ZP_15340115.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|420881759|ref|ZP_15345123.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|420888066|ref|ZP_15351420.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|420893793|ref|ZP_15357135.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|420898622|ref|ZP_15361958.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|420903935|ref|ZP_15367256.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|420970934|ref|ZP_15434131.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|421048242|ref|ZP_15511238.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|363998839|gb|EHM20045.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|392090420|gb|EIU16233.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0304]
gi|392090814|gb|EIU16625.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0421]
gi|392092626|gb|EIU18431.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0422]
gi|392102383|gb|EIU28170.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0708]
gi|392107863|gb|EIU33645.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0817]
gi|392109193|gb|EIU34971.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1212]
gi|392117708|gb|EIU43476.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-1215]
gi|392171906|gb|EIU97579.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
5S-0921]
gi|392242407|gb|EIV67894.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
CCUG 48898]
Length = 598
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 185/335 (55%), Gaps = 28/335 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP+ +++L++KYL +P+ I + + AE
Sbjct: 178 MLTMGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAE 235
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +EV+ L + A+ A++G
Sbjct: 236 NITQRFIQVAGPRKMDALTRILEVETFEA-MIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 295 DINQSQRERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 354
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ GTA+L + +R ++++E+ G K P VEDV +A++V + +
Sbjct: 355 RAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAA 411
Query: 237 --HPESVEFFTPTAQRLIEEKGTDA------LAAALAQLS----GFSRPPSSRSLINHEQ 284
PE VE F +RL+E+ D +AAALA LS F P HE+
Sbjct: 412 LAAPE-VELF----RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHER 466
Query: 285 GWVTLQLTR-DSAFSRGFMSARSVMGFLSDVYPTA 318
G + R + + + G + R +G V P A
Sbjct: 467 GERPDRGPRGERSRTPGLATYRIAVGKRHKVMPGA 501
>gi|414886327|tpg|DAA62341.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 317
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 125/204 (61%), Gaps = 3/204 (1%)
Query: 47 NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL 106
+DLVGN+ K + +K A+ ++ ++ D+I Y+ GG+TI+FT+TK A E+S
Sbjct: 10 TVDLVGNEKLKASASVKHLALPCNKAARAQVIPDIIRCYSHGGRTIIFTETKDSASELS- 68
Query: 107 ALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166
I S ALHGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P
Sbjct: 69 --GLIHGSRALHGDVAQAQREVILAGFRSGKFQVLVATNVAARGLDINDVQLIIQCEPPR 126
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
D E ++HRSGRTGRAG G A++++ + +V LER+ G KFE +S P DV +S+
Sbjct: 127 DVEAYIHRSGRTGRAGNTGVAVMLYEPRYKHSVSRLERESGVKFEHISAPQPTDVAQSAG 186
Query: 227 EQVVATLNGVHPESVEFFTPTAQR 250
+ + V + F A++
Sbjct: 187 SEAADAIASVSDSVIPIFRQQAEQ 210
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ+ LFSATMP + +L++KY P++I +V + E
Sbjct: 159 MLDMGFREDIETILSSTPQERQTSLFSATMPKAILELTQKYQKEPVHIKVV--RKELTVN 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHG 119
IK + I T ++K +L+ LI VY T+VFT TK+ ADE VS +++LHG
Sbjct: 217 NIKQFYIETRKSNKLEVLTRLIDVYNPK-LTVVFTNTKKGADELVSDLQARGYGADSLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ +I+YELP D E +VHR GRTG
Sbjct: 276 DLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG++G A + R ++ +ER K S P V DV + Q
Sbjct: 336 RAGRDGIAFSFVFGREMRKLKDIERYTKSKVMKHSIPTVNDVEQKKIGQ 384
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 145/231 (62%), Gaps = 5/231 (2%)
Query: 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF ED+E IL+ +P +RQ MLFSATMP +KKL++ Y+ P ++ + ++DE
Sbjct: 161 MLDMGFVEDIETILKQVPREERQVMLFSATMPPEIKKLAQNYMSQPKSVAV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ K L +I + G+ I+F +TKR DE+ AL + ++ALH
Sbjct: 219 PLIEQVFYEARDKIKVDALCRIIDM-EDIGQAIIFCRTKRGVDELVAALEARGYFADALH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DPE++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GRAG++G AI + +S + R +R +ER + + P + DV E AE +
Sbjct: 338 GRAGRKGQAITLISSREYRQLRLIERLIKTRIVRKELPTLADVSERQAENL 388
>gi|422324246|ref|ZP_16405283.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
gi|353344302|gb|EHB88614.1| hypothetical protein HMPREF0737_00393 [Rothia mucilaginosa M508]
Length = 752
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 165/280 (58%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE P +Q LFSATMP+ ++K++++YL++P+ + + +
Sbjct: 241 MLRMGFAEDVEKILEGTPDSKQVALFSATMPNSIRKIAQQYLNDPVEVRVKAKT--TTSA 298
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K ++ ++ V G IVF +TK++ +EV+ L + A+ A++G
Sbjct: 299 NISQRYMQVMHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFAAAAING 357
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ R G+ +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 358 DIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 417
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+EG AIL T ++ +R +E+ K E + P E V E+ A+Q+ T
Sbjct: 418 RAGREGAAILFVTPREKYMLRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQITET--- 474
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
+ E + FF + E T A +AAALA ++ RP
Sbjct: 475 IESEDLSFFRQIIEDYENEHDTTAEDIAAALAVIAQQGRP 514
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/340 (34%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+E+ P ++Q+MLFSATMP+ +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMESTPEEKQTMLFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL AI R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQHYFAVKNKDKLEAIC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER K P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKITKKELPTLEDILEKKYDNL 387
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S N + V
Sbjct: 388 LNDITSKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDEASVRNHEIGDIDIL 485
>gi|433447995|ref|ZP_20411254.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
gi|431999627|gb|ELK20547.1| DEAD-box ATP-dependent RNA helicase CshA [Anoxybacillus
flavithermus TNO-09.006]
Length = 471
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 156/269 (57%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP +++++ +++ NP + + E
Sbjct: 159 MLNMGFVEDIEAILSHVPTERQTLLFSATMPEPIRRIAERFMQNPELVRVKAK--EMTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y I K L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 217 NIEQYYIEIQEKKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYTAEGIHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 276 DLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G AI T + + +E+ K E + PP +++ LES + L +
Sbjct: 336 RAGKTGMAITFVTPREIGQLHHIEKTTKRKMERMKPPTLDEALESQQRAAIEKLLTTIEH 395
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQL 267
++ F+ A+ L+EE + +L AA ++
Sbjct: 396 NNLSFYKRAAEELLEEHDSVSLVAACIKM 424
>gi|418419638|ref|ZP_12992821.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
gi|364001268|gb|EHM22464.1| cold-shock DEAD box protein A-like protein (ATP-dependent RNA
helicase DEAD-like protein) [Mycobacterium abscessus
subsp. bolletii BD]
Length = 598
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 184/335 (54%), Gaps = 28/335 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP+ +++L++KYL +P+ I + + AE
Sbjct: 178 MLTMGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAE 235
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +EV+ L + A+ A++G
Sbjct: 236 NITQRFIQVAGPRKMDALTRILEVETFEA-MIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 295 DINQSQRERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 354
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ GTA+L + +R ++++E+ G K P VEDV +A++V + +
Sbjct: 355 RAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAA 411
Query: 237 --HPESVEFFTPTAQRLIEEKGTDA------LAAALAQLS----GFSRPPSSRSLINHEQ 284
PE VE F +RL+E+ D +AAALA LS F P HE+
Sbjct: 412 LAAPE-VELF----RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHER 466
Query: 285 GWVTLQLTR-DSAFSRGFMSARSVMGFLSDVYPTA 318
G + R + + G + R +G V P A
Sbjct: 467 GERPDRGPRGERPRTPGLATYRIAVGKRHKVMPGA 501
>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
Length = 744
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 164/280 (58%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE P +Q LFSATMP+ ++K++++YL++P I + +
Sbjct: 227 MLRMGFAEDVEKILEGTPDSKQVALFSATMPNSIRKIAQQYLNDPTEIRVKAKT--TTSA 284
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K ++ ++ V G IVF +TK++ +EV+ L + A+ A++G
Sbjct: 285 NISQRYMQVMHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFAAAAING 343
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ R G+ +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 344 DIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 403
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+EG AIL T ++ +R +E+ K E + P E V E+ A+Q+ T
Sbjct: 404 RAGREGAAILFVTPREKYMLRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQITET--- 460
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
+ E + FF + E T A +AAALA ++ RP
Sbjct: 461 IESEDLSFFRQIIEDYENEHDTTAEDIAAALAVIAQQGRP 500
>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
16795]
gi|164603369|gb|EDQ96834.1| DEAD/DEAH box helicase [Clostridium bartlettii DSM 16795]
Length = 541
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 141/239 (58%), Gaps = 8/239 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ELIL P +RQ+ FSATMP + +L++ Y P I +V + E
Sbjct: 159 MLDMGFREDIELILNQTPIERQTTFFSATMPKEILELTKLYQHEPEIIKVV--RKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK + I T +K +L LI VY ++VF TKR +DE+ L + ++ALHG
Sbjct: 217 NIKQFYIETRRANKLEVLCRLIDVY-NPKLSVVFCNTKRGSDELVSELQARGYFADALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FRQG +LVATDVAARG+D+ +VD++ +Y+LP D E +VHR GRTG
Sbjct: 276 DLKQTQRDIVMDKFRQGTIDILVATDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLN 234
RAG+EG + + R +R +ER CK S P + DV E +QV T+N
Sbjct: 336 RAGREGVSFSFVYGKEMRKMRDIERYTKCKLVKHSIPTIADVEEKKVAAFFKQVKDTVN 394
>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
ATCC 19977]
gi|419716620|ref|ZP_14244016.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|420863361|ref|ZP_15326754.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|420867758|ref|ZP_15331143.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|420872190|ref|ZP_15335570.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|420908973|ref|ZP_15372286.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|420915356|ref|ZP_15378661.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|420919746|ref|ZP_15383044.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|420926243|ref|ZP_15389528.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|420965711|ref|ZP_15428925.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
gi|420976589|ref|ZP_15439771.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|420981969|ref|ZP_15445139.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|420986517|ref|ZP_15449678.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|421006515|ref|ZP_15469630.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|421011836|ref|ZP_15474929.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|421016756|ref|ZP_15479823.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|421022668|ref|ZP_15485716.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|421028023|ref|ZP_15491060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|421033882|ref|ZP_15496904.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|421039073|ref|ZP_15502084.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|421042545|ref|ZP_15505550.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
helicase DEAD homolog) [Mycobacterium abscessus]
gi|382940906|gb|EIC65228.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M94]
gi|392073161|gb|EIT99001.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RA]
gi|392073881|gb|EIT99719.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0303]
gi|392076379|gb|EIU02212.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0726-RB]
gi|392121347|gb|EIU47112.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-R]
gi|392123040|gb|EIU48802.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0125-S]
gi|392133751|gb|EIU59493.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-S]
gi|392138651|gb|EIU64384.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-1108]
gi|392170848|gb|EIU96525.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0212]
gi|392173987|gb|EIU99653.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
6G-0728-R]
gi|392187934|gb|EIV13573.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0206]
gi|392202267|gb|EIV27864.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0119-R]
gi|392210240|gb|EIV35810.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-R]
gi|392215365|gb|EIV40913.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0731]
gi|392215856|gb|EIV41403.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0122-S]
gi|392227287|gb|EIV52801.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-R]
gi|392230423|gb|EIV55933.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-S]
gi|392231929|gb|EIV57433.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0930-R]
gi|392241611|gb|EIV67099.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
4S-0116-S]
gi|392257699|gb|EIV83148.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium abscessus
3A-0810-R]
Length = 598
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 184/335 (54%), Gaps = 28/335 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP+ +++L++KYL +P+ I + + AE
Sbjct: 178 MLTMGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAE 235
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +EV+ L + A+ A++G
Sbjct: 236 NITQRFIQVAGPRKMDALTRILEVETFEA-MIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 295 DINQSQRERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 354
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ GTA+L + +R ++++E+ G K P VEDV +A++V + +
Sbjct: 355 RAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAA 411
Query: 237 --HPESVEFFTPTAQRLIEEKGTDA------LAAALAQLS----GFSRPPSSRSLINHEQ 284
PE VE F +RL+E+ D +AAALA LS F P HE+
Sbjct: 412 LAAPE-VELF----RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHER 466
Query: 285 GWVTLQLTR-DSAFSRGFMSARSVMGFLSDVYPTA 318
G + R + + G + R +G V P A
Sbjct: 467 GERPDRGPRGERPRTPGLATYRIAVGKRHKVMPGA 501
>gi|397678974|ref|YP_006520509.1| cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
gi|418249081|ref|ZP_12875403.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|419711589|ref|ZP_14239052.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|420930546|ref|ZP_15393822.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|420936028|ref|ZP_15399297.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|420940798|ref|ZP_15404060.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|420946105|ref|ZP_15409358.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|420951063|ref|ZP_15414309.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|420955234|ref|ZP_15418473.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|420960958|ref|ZP_15424186.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|420991202|ref|ZP_15454354.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|420997038|ref|ZP_15460178.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|421001472|ref|ZP_15464602.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|353450736|gb|EHB99130.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
47J26]
gi|382938911|gb|EIC63240.1| cold-shock DEAD box protein A-like protein [Mycobacterium abscessus
M93]
gi|392139564|gb|EIU65296.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-151-0930]
gi|392141543|gb|EIU67268.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-152-0914]
gi|392151585|gb|EIU77293.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-153-0915]
gi|392159313|gb|EIU85009.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
1S-154-0310]
gi|392160840|gb|EIU86531.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0626]
gi|392189282|gb|EIV14916.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-R]
gi|392190213|gb|EIV15845.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0307]
gi|392200290|gb|EIV25896.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0912-S]
gi|392254023|gb|EIV79490.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-1231]
gi|392255762|gb|EIV81223.1| ATP-dependent DEAD-box RNA helicase DeaD [Mycobacterium massiliense
2B-0107]
gi|395457239|gb|AFN62902.1| Cold-shock DEAD box protein A-like protein [Mycobacterium
massiliense str. GO 06]
Length = 598
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 184/335 (54%), Gaps = 28/335 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP+ +++L++KYL +P+ I + + AE
Sbjct: 178 MLTMGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKI--DAKTSTAE 235
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +EV+ L + A+ A++G
Sbjct: 236 NITQRFIQVAGPRKMDALTRILEVETFEA-MIVFVRTKQATEEVADKLKARGFAAAAING 294
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 295 DINQSQRERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 354
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ GTA+L + +R ++++E+ G K P VEDV +A++V + +
Sbjct: 355 RAGRSGTAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDV---NAQRVTKFRDAITAA 411
Query: 237 --HPESVEFFTPTAQRLIEEKGTDA------LAAALAQLS----GFSRPPSSRSLINHEQ 284
PE VE F +RL+E+ D +AAALA LS F P HE+
Sbjct: 412 LAAPE-VELF----RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHER 466
Query: 285 GWVTLQLTR-DSAFSRGFMSARSVMGFLSDVYPTA 318
G + R + + G + R +G V P A
Sbjct: 467 GERPDRGPRGERPRTPGLATYRIAVGKRHKVMPGA 501
>gi|383808644|ref|ZP_09964182.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
gi|383448538|gb|EID51497.1| DEAD/DEAH box helicase / helicase C-terminal domain / DbpA RNA
binding domain multi-domain protein [Rothia aeria F0474]
Length = 699
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 163/279 (58%), Gaps = 13/279 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE P +Q LFSATMPS ++K++++YL++P + +
Sbjct: 259 MLRMGFAEDVETILEGTPDAKQVALFSATMPSSIRKIAQQYLNDPTEVRV--KTKTTTGA 316
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + T + K ++ ++ V G IVF +TK++ +EV+ L + + A++G
Sbjct: 317 NIRQRYMQVTHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFQAAAING 375
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ R G+ +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 376 DIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 435
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG++G AIL T +R +R +E+ K E + P +DV + AEQ+ T
Sbjct: 436 RAGRDGEAILFVTPRERYMLRQIEKATRQKVEPMRMPTAQDVNANRKQRFAEQITTT--- 492
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSR 272
+ E ++FF Q E A +AAALA ++ R
Sbjct: 493 IETEDLDFFRQIIQDYENEHDITAEDIAAALAVIAQQGR 531
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 147/234 (62%), Gaps = 9/234 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ++ FSATMP + +L++KY DNP + ++ + E E
Sbjct: 160 MLDMGFREDIESILGDCPEERQTVFFSATMPKPILELTKKYQDNPEIVRVL--RKELTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITV--YAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
I + K ++S L+ + YA ++VF TKR DEV+ L + I +EAL
Sbjct: 218 NITQNFFEVKPSLKMELMSRLMHLNQYAL---SVVFCNTKRVTDEVTEELVARGIMAEAL 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QR + +N FR+G +VLVATDVAARG+D+ NV+ + +++LP D E +VHR GR
Sbjct: 275 HGDLSQAQRTKVMNKFRKGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGR 334
Query: 178 TGRAGKEGTAILMFTSSQRR-TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
TGRAGK GTAI T + +R +E+ + ++PP V D++E +Q+V
Sbjct: 335 TGRAGKSGTAINFVTGRKDMFRIRDIEKFIKTTISKMAPPSVSDLIELKKQQLV 388
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 6/223 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLA 59
ML +GF ED+E IL+ +P +RQ LFSAT+P+ + LSR+YL P+ I + + L
Sbjct: 156 MLDMGFVEDIEWILDQVPAQRQIALFSATIPNRIVDLSRRYLQKPVRIAIEPERVTVPLT 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
E + + T + DL I+F +TKR+ D+++ L S+ +EALH
Sbjct: 216 EQVYYQVVPRAKVEALTRILDLTA----PSSAIIFCRTKREVDDLTQKLESLGYPAEALH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR G+ +L+ATDVA+RGLDI V +I+Y++P DPE++VHR GRT
Sbjct: 272 GDLSQVQRDRVMGRFRSGQTELLIATDVASRGLDIEQVSHVINYDIPLDPESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
GRAG+ G AI + T + R +R++ER G + E S P E++
Sbjct: 332 GRAGRPGVAITLVTPRESRLLRAIERATGGRIERRSVPTAEEI 374
>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
Length = 732
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 164/280 (58%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE P +Q LFSATMP+ ++K++++YL++P + + +
Sbjct: 222 MLRMGFAEDVEKILEGTPDSKQVALFSATMPNSIRKIAQQYLNDPREVRVKAKT--TTSS 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K ++ ++ V G IVF +TK++ +EV+ L + A+ A++G
Sbjct: 280 NISQRYMQVMHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFAAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ R G+ +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 339 DIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+EG AIL T ++ +R +E+ K E + P E V E+ A+Q+ T
Sbjct: 399 RAGREGAAILFVTPREKYMLRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQITET--- 455
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
+ E + FF + E T A +AAALA ++ RP
Sbjct: 456 IESEDLSFFRQIIEDYENEHDTTAEDIAAALAVIAQQGRP 495
>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
Length = 532
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 37/309 (11%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +PP+RQ+MLFSATMP + +S+KY+ P + + +++ A
Sbjct: 161 MLDMGFIEDIETIIKEVPPERQTMLFSATMPRPILSISKKYMRTPKVVAI--HKEIVTAP 218
Query: 61 GIKLYAISTTATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLAL-TSIIASEAL 117
I Y T R + L + K I+F +TK+ DE+ +AL T +E L
Sbjct: 219 TIDQYYYET-----RDKVDGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGL 273
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QR+R + FRQ + +LVATDVAARG+DI N+ ++++++P DPE++VHR GR
Sbjct: 274 HGDLSQTQRDRVMKKFRQDQVDILVATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGR 333
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ T + R ++ +ER V K P +VLE EQ+++ + +
Sbjct: 334 TGRAGNTGVALTFITPREFRQLKLIERSVKTKIIRGQLPTDANVLEKQREQIISKMQSIL 393
Query: 238 PE-------------------------SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272
+ +++F + L E + DAL ALA +R
Sbjct: 394 EQNQYHDYLPIAEALENDYDIHDIAAAAIKFMQEGNKALEEPQTADALPEALANTG--AR 451
Query: 273 PPSSRSLIN 281
P R IN
Sbjct: 452 PGMVRLFIN 460
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL+++P +RQ+ LFSAT+P V L+R+YL +P + + +
Sbjct: 156 MLDMGFIEDVEWILDHVPAERQTALFSATIPDRVAALARRYLRDPARVAV--EPERVTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + +K L+ ++ + I+F +TKR DE++ L S+ A+EALHG
Sbjct: 214 QIEQTYVEVVQRAKVEALTRILDMETPP-SAIIFCRTKRGVDELTQQLQSLGYAAEALHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+R + FR G+ +L+ATDVAARGLD+ + +I+Y++P DPE++VHR GRTG
Sbjct: 273 DLSQVQRDRVMARFRSGQAELLIATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AI + T +RR +R +ER G + P E+V
Sbjct: 333 RAGRAGAAITLVTPRERRLLREIERATGVRMTRRGVPTPEEV 374
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 150/242 (61%), Gaps = 8/242 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +RQ++LFSATMP +++L+R+Y+ P + + ++D+
Sbjct: 172 MLDMGFVEDIEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTI--SRDKLTVP 229
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I+ + K L ++ + + G +I+F +TKR DE+ AL T +E LHG
Sbjct: 230 LIEQVYYECKESQKVDALCRILDM-EEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHG 288
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QR+R + FR GK +L+ATDVAARGLD+ NV +I+Y++P DPE++VHR GRTG
Sbjct: 289 DLTQAQRDRVMKKFRDGKAELLIATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTG 348
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNG 235
RAG++G AI + + R ++ +ER + + P + D++E E ++V L+G
Sbjct: 349 RAGRKGIAITLINYREYRQLKLIERVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDG 408
Query: 236 VH 237
H
Sbjct: 409 GH 410
>gi|410028951|ref|ZP_11278787.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 570
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 144/232 (62%), Gaps = 5/232 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ++ FSATMP + L++K+ DNP + ++ + E E
Sbjct: 160 MLDMGFREDIENILSDCPEERQTVFFSATMPKPIMDLTKKFQDNPEIVKVL--RKELTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I K ++S LI + + ++VF TKR DEV+ L + I +EALHG
Sbjct: 218 NISQVYYEVKPALKLELMSRLINLN-QFQLSVVFCNTKRVTDEVTEELIARGITAEALHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR + +N FR+G +VLVATDVAARG+D+ NV+ + +++LP D E +VHR GRTG
Sbjct: 277 DLSQAQRTKVMNKFRKGHVSVLVATDVAARGIDVDNVEAVFNFDLPLDEENYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRR-TVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
RAGK GTAI T + ++ LE+ + ++PP V D++E EQ++
Sbjct: 337 RAGKSGTAISFVTGRKDMFRIKDLEKFIKTSIAKMAPPSVADLIELKKEQLI 388
>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
Length = 526
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 145/256 (56%), Gaps = 7/256 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL P +RQ++LFSATMP + +++R Y N + +V + E
Sbjct: 159 MLNMGFREDIETILSQTPEERQTLLFSATMPQPIMEIARTYQKNAKIVKVV--KRELTVA 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y +K +LS L+ +Y ++VF TKR DE+ L +E LHG
Sbjct: 217 NIEQYYYEVRPKNKEEVLSRLLDIYNPA-LSVVFCNTKRQVDELVEGLKGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +NGFR G+ +LVATDVAARG+D+ +VD + +Y+LP D E +VHR GRTG
Sbjct: 276 DMKQQQRDRVMNGFRNGRTEILVATDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A T + ++ ++R K P + DV A+++ + G+ E
Sbjct: 336 RAGKNGKAFTFITGREFYKLKDIQRYCRTKIIAKQVPSLNDVANVKADKIFEKVAGMIDE 395
Query: 240 SVEFFTPTAQRLIEEK 255
+ P R+IEEK
Sbjct: 396 --DNLKPYI-RMIEEK 408
>gi|352684524|ref|YP_004896509.1| DEAD/DEAH box helicase [Acidaminococcus intestini RyC-MR95]
gi|350279179|gb|AEQ22369.1| DEAD/DEAH helicase [Acidaminococcus intestini RyC-MR95]
Length = 537
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 165/309 (53%), Gaps = 37/309 (11%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +PP+RQ+MLFSATMP + +S+KY+ P + + +++ A
Sbjct: 166 MLDMGFIEDIETIIKEVPPERQTMLFSATMPRPILSISKKYMRTPKVVAI--HKEIVTAP 223
Query: 61 GIKLYAISTTATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLAL-TSIIASEAL 117
I Y T R + L + K I+F +TK+ DE+ +AL T +E L
Sbjct: 224 TIDQYYYET-----RDKVDGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGL 278
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QR+R + FRQ + +LVATDVAARG+DI N+ ++++++P DPE++VHR GR
Sbjct: 279 HGDLSQTQRDRVMKKFRQDQVDILVATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGR 338
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ T + R ++ +ER V K P +VLE EQ+++ + +
Sbjct: 339 TGRAGNTGVALTFITPREFRQLKLIERSVKTKIIRGQLPTDANVLEKQREQIISKMQSIL 398
Query: 238 PE-------------------------SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272
+ +++F + L E + DAL ALA +R
Sbjct: 399 EQNQYHDYLPIAEALENDYDIHDIAAAAIKFMQEGNKALEEPQTADALPEALANTG--AR 456
Query: 273 PPSSRSLIN 281
P R IN
Sbjct: 457 PGMVRLFIN 465
>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
Length = 570
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ++ P RQ LFSATMP+ ++K+++KYL++P + V NQ K A+
Sbjct: 161 MLRMGFIEDVEWVISQTPQSRQVALFSATMPAAIRKIAQKYLNSPQEL-AVKNQS-KTAD 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ + K L+ ++ V G IVF +TK E+S L + + A L G
Sbjct: 219 TIRQRFWPVSGYHKLDALTRILEVEDFDG-MIVFVRTKVATVELSEKLEARGYNTAPLSG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ RQGK +LVATDVAARGLD+ + +I+Y++P DPE +VHR GRTG
Sbjct: 278 DVPQNQRERTVERLRQGKLDILVATDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+EG AIL T ++R + S+ER + E + P E V + E+ + N +
Sbjct: 338 RAGREGEAILFVTPREKRLLSSIERSTRQRIERMEMPSTEVVNDQRIERFKQKITNALAQ 397
Query: 239 ESVEFFTPTAQRLIEEKGTDA--LAAALAQL 267
E FFT ++ +E A +A ALA+L
Sbjct: 398 EDSAFFTQILEQYEQEHDVPAIEIAGALAKL 428
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+E+ ++Q+MLFSATMP+ +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMESTSEEKQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL AI R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQHYFAVKNKDKLEAIC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER + K P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNL 387
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S N + V
Sbjct: 388 LNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML-FSKEMSFDYTNNKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDSSSVKNHEIGDIDIL 485
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ ++L NP+++ + +Q E
Sbjct: 160 MLKMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRNPVHVRIESSQ--TTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+NG
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETING 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL Q RP
Sbjct: 397 ----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ ++L NP+++ + +Q E
Sbjct: 160 MLKMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRNPVHVRIESSQ--TTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+NG
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETING 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL Q RP
Sbjct: 397 ----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|424835106|ref|ZP_18259776.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
gi|365978233|gb|EHN14325.1| DEAD-box ATP dependent DNA helicase [Clostridium sporogenes PA
3679]
Length = 525
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+ + P K+Q+MLFSATMP+ +KKL+ Y L L +D
Sbjct: 161 MLNMGFIEDIETIMASTPEKKQTMLFSATMPTPIKKLALNYMKKDVEHIAILKKSLTVDK 220
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL AI R I S+ + I+F +TKR DE+ A+ S
Sbjct: 221 IAQHYFAVKNKDKLEAIC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 268
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 269 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 328
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER + K P +ED+LE + +
Sbjct: 329 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNL 388
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S + + V
Sbjct: 389 LNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML-FSKEMSFDYTNDKLEAEVP 447
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 448 VRLFL-SVGRKDSINVKSLLTFIQDEASVRNHEIGDIDIL 486
>gi|392417671|ref|YP_006454276.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617447|gb|AFM18597.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 563
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP ++K++ KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPGIRKITAKYLHDPVEVTV--KSKSQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I + K L+ L+ V +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 225 NITQRYIQVSHQRKMDALTRLLEV-EQGDAMIVFVRTKQATEEVAEKLKARGFAAAAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+N + G +LVATDVAARGLD+ + +++Y++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTINQLKDGSIDILVATDVAARGLDVERISHVVNYDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAG+ GTA+L T +R + S+ER K P VEDV E
Sbjct: 344 RAGRSGTALLFVTPRERHLLNSIERVTRQKLVESELPSVEDVNE 387
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 163/278 (58%), Gaps = 12/278 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL +P +R +MLFSATMP ++KL++++L +P ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQAILSQVPEERHTMLFSATMPPNIQKLAQQFLRDPQHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I K L LI + A I+F +TKR DE+S AL ++E LHG
Sbjct: 214 LIQQAYIEVHEKQKFEALCRLIDMEAPD-LAIIFGRTKRRVDELSEALQKRGYSAEGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGKEGTA T + + +ER + P + + +E +AE+++ +N
Sbjct: 333 RAGKEGTAWTFVTPREIDHLHFIERVTRHRITRKPLPSLAEAIEGKQRVTAERLLEVINN 392
Query: 236 VHPESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSR 272
E + F A +L+E+ + LAAA+ L+G SR
Sbjct: 393 ---EGAQPFKGVAIQLLEQYDSVNLLAAAIKLLTGESR 427
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 159/272 (58%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P RQ++LFSATMP ++K++ ++++P+ I + E
Sbjct: 156 MLNMGFIEDIEAILKEVPEVRQTLLFSATMPEPIRKIAENFMNDPVQIKVKAK--EMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I+ Y I K +L+ L+ + + IVF +TKR DE+S AL T A+E +HG
Sbjct: 214 NIEQYYIEMQEKKKFDVLTRLLDMESPE-LAIVFGRTKRRVDELSEALNTRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRSSVLKKFKAGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGK G A T + ++++ER E P ++D LE +AE+++ T+
Sbjct: 333 RAGKTGLAYTFVTPREIGQLKNIERTTKRSMERKPVPSMDDALEGQKQITAEKILYTIQN 392
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E+ F+ A+ L++E + + AA +L
Sbjct: 393 ---ENFSFYKHMAEELLDEHDSVTVVAAAIKL 421
>gi|431798400|ref|YP_007225304.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430789165|gb|AGA79294.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 567
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 158/275 (57%), Gaps = 14/275 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+E +L +P RQ++ FSATM + L+RKY NP ++V Q ++L
Sbjct: 160 MLDMGFREDIETVLSQMPEDRQTIFFSATMAKPIMDLTRKYQTNP---EIVKIQRKELTV 216
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
E I K +++ LI ++ + +VF TKR DEV+ L + I +EALH
Sbjct: 217 ENISQVYYEVKPPLKMELITRLINIH-QFNLGVVFCNTKRATDEVTEGLIARGIMAEALH 275
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR++ +N FR+G TVLVATDVAARG+D+ NV+++ +Y+LP D E +VHR GRT
Sbjct: 276 GDLSQAQRDKVMNKFRKGHCTVLVATDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRT 335
Query: 179 GRAGKEGTAILMFTSSQRRTV---RSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN- 234
GRAG+ G AI T R+ + + LER + ++PP V ++++ +Q+V +
Sbjct: 336 GRAGRSGMAISFITG--RKDIFRLKDLERYIKTTLTKMNPPSVAEMIDQKKDQLVKEVTT 393
Query: 235 --GVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
++ F Q L E D +A L +L
Sbjct: 394 SLSKEEDNQVFEAALGQMLAEGLSMDQIALGLVKL 428
>gi|25027815|ref|NP_737869.1| cold shock DEAD-box protein A [Corynebacterium efficiens YS-314]
gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
YS-314]
gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
Length = 736
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 144/224 (64%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P +Q LFSATMP+ +++LS++YL+NP I + + + A
Sbjct: 260 MLNMGFQEDVERILADTPDDKQVALFSATMPNGIRRLSKQYLNNPQEISV--KSETRTAT 317
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I +S +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 318 NITQRFLSVAHRNKMDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 376
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + +++Y++PND E++VHR GRTG
Sbjct: 377 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTG 436
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAG+ G AIL T +RR +RS+ER + P V++V E
Sbjct: 437 RAGRTGEAILFVTPRERRMLRSIERATNAPLVEMELPTVDEVNE 480
>gi|42779348|ref|NP_976595.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217957807|ref|YP_002336351.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|375282337|ref|YP_005102772.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|384178162|ref|YP_005563924.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402554174|ref|YP_006595445.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|423357187|ref|ZP_17334786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|423376168|ref|ZP_17353482.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|423572348|ref|ZP_17548555.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|423577914|ref|ZP_17554033.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|423607941|ref|ZP_17583834.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|81700027|sp|Q73EU1.1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST26]
gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358350860|dbj|BAL16032.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NC7401]
gi|401075815|gb|EJP84184.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus IS075]
gi|401089159|gb|EJP97331.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus AND1407]
gi|401197715|gb|EJR04643.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A12]
gi|401203960|gb|EJR10791.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-D12]
gi|401239515|gb|EJR45942.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD102]
gi|401795384|gb|AFQ09243.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 525
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L N +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|373859820|ref|ZP_09602543.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450463|gb|EHP23951.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 487
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL +P +RQ++LFSATMP +++++ K++ P + + E
Sbjct: 156 MLNMGFIEDIEAILSQIPAERQTLLFSATMPMPIQRMAEKFMKEPQVVRV--KTKEMTVS 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
++ + + +K +L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 214 SVEQFYVEVQERNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYMAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLKKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ T ++ + +ER K E + PP V+ LE + VV L +
Sbjct: 333 RAGKTGVALTFVTHREKSYLSVVERTTKRKMEKMVPPTVDQALEGQQKAVVEKILQTIEA 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQL 267
+++++ A L++++ + AA+ ++
Sbjct: 393 NNLQYYKEAADELLDQQDPSTVVAAMLKM 421
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 172/304 (56%), Gaps = 13/304 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL ++P +RQ++LFSATMP ++ ++ K++ NP + + E
Sbjct: 156 MLNMGFIQDIETILSHMPKERQTLLFSATMPEPIRAIAEKFMKNPELVQVKAK--EMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y I K +LS L+ V + IVF +TKR DE++ ALT ++E +HG
Sbjct: 214 QIEQYFIKIQEREKFDVLSRLLDVQSPE-LAIVFGRTKRRVDELTRALTLRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLSQMKRLNVLKKFKEGKVDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL----ESSAEQVVATLNG 235
RAGKEG AI + + +R +ER + + PP + L +++ ++ LN
Sbjct: 333 RAGKEGIAITFVSPREMGYLREVERTTKKRMTPMQPPTWTEALIGQQKAAVNEIETCLNN 392
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295
E++E + A L+ + + AA +L ++ P+ + E+G + ++
Sbjct: 393 ---ENLEDYQELANELLAQFPPSQVVAAALKL--LTKEPNRTPVHITEEGPLPMKKESRR 447
Query: 296 AFSR 299
+F++
Sbjct: 448 SFNK 451
>gi|227548399|ref|ZP_03978448.1| superfamily II helicase, partial [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 683
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 145/225 (64%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ ++K+S++YL++P + + + +
Sbjct: 259 MLNMGFQEDVERILEDTPNTKQVALFSATMPNGIRKISKQYLNDPAEVTV--KSETRTNT 316
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T +K ++ ++ V + IVF +TK + +E++ L + ++ A++G
Sbjct: 317 NITQRYLFTAHRNKLDAITRILEV-TEFEAMIVFVRTKHETEELAEKLRARGFSAAAING 375
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ R G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 376 DIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTG 435
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER E + P V++V ES
Sbjct: 436 RAGRTGEAILFVTPRERRMLRSIERVTNATIEEMELPTVDEVNES 480
>gi|381395882|ref|ZP_09921576.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328447|dbj|GAB56709.1| ATP-dependent RNA helicase DeaD [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 584
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 166/277 (59%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVELIL + P RQ+ LFSATMP +KK+S+KYL+NP ++ + A
Sbjct: 162 MLRMGFIDDVELILSHAPSTRQTALFSATMPDQIKKISQKYLNNPKHVKI--ESKVSTAS 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L+ ++ + G IVF +TK E++ L++ EAL+G
Sbjct: 220 TIRQRYVQVAGHHKLETLTRILEIEEFEG-VIVFVRTKTATLELAEKLSARGYDVEALNG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RERT+ +QGK +LVATDVAARGLD+ V +I+Y++P+D E++VHR GRTG
Sbjct: 279 DIAQAARERTVERLKQGKIDILVATDVAARGLDVERVSHVINYDVPHDTESYVHRVGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHP 238
RAG++G AIL + ++R + ++ER + + P + ++ ES + + ++ +
Sbjct: 339 RAGRKGDAILFISHREKRMLFAIERATKQEITMMEIPSIGELNESRLGRFKKSVIDALAH 398
Query: 239 ESVEFFTPTAQRLIEEK--GTDALAAALAQLSGFSRP 273
ES+E + P + +I E + + AALA+++ + P
Sbjct: 399 ESIESYMPVIEAIIRESEASPEMVMAALAKVAQGNEP 435
>gi|399888651|ref|ZP_10774528.1| RNA helicase [Clostridium arbusti SL206]
Length = 523
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 157/270 (58%), Gaps = 12/270 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I+ N +RQ++LFSATMP +KKL+ KYL + + + + +++
Sbjct: 158 MLNMGFIDDIEEIINNTNKERQTLLFSATMPRPIKKLAEKYLKKDVKLIQILKKSMTVSK 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-----E 115
I Y ++ L ++ + I+F +TK++ DE L S + S E
Sbjct: 218 -IDQYFYEVHNNARLEALCRILDT-EEPECAIIFCKTKKNVDE----LVSTMGSKGYNIE 271
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
+HGD+ Q QR TL+ F+ GK T L ATDVAARG+D+ N+ +I+YELP D E++VHR
Sbjct: 272 GMHGDMKQSQRLSTLSKFKHGKLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRI 331
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-N 234
GRTGRA K GTAI + T + ++ +ERD+ K + P V+D++ ++ +VA + N
Sbjct: 332 GRTGRANKSGTAISLITKKEFSKLKQIERDIKSKITKKAVPSVDDIINIKSKNIVAKITN 391
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + + F P + L + + +AAAL
Sbjct: 392 ILNDDEYKKFEPIIEDLSSQYSLNQIAAAL 421
>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 509
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 159/279 (56%), Gaps = 9/279 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ++LFSATMP +KK++ +++ +P I + E E
Sbjct: 156 MLNMGFVEDIETILAGLPEERQTLLFSATMPPQIKKIAERFMKSPTIIKVKAK--EMTVE 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L LI + + +I+F +TK+ DEV+ AL ++ LHG
Sbjct: 214 NINQQFLELREGQKFDTLCRLIDIDSPE-LSIIFARTKKRVDEVTEALIKRGYTADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R++ + F+ G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQSKRDQVIRRFKNGTIDILVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK GTA+ T + V+++ER K P + +VLE + +Q L V
Sbjct: 333 RAGKTGTALTFITPREFGQVKAIERVTNKKMNRRHVPTIAEVLEGNQKQAAEELIERVQA 392
Query: 239 ESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPSS 276
+ +T A L+EE + + LAAA L G ++ P S
Sbjct: 393 GDFKAYTQLATELLEEYEAVEILAAA---LRGLTKEPDS 428
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 178/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+E+ ++Q+MLFSATMP +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMESTSEEKQTMLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL A+ R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQNYFAVKNKDKLEALC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER K + P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKIKKKELPTLEDILEKKYDNL 387
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S N + V
Sbjct: 388 LNDITSKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDAASVKNHEIGDIDIL 485
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+E+ ++Q+MLFSATMP +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMESTSEEKQTMLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL A+ R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQNYFAVKNKDKLEALC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER K + P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKIKKKELPTLEDILEKKYDNL 387
Query: 230 VATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + + E F P + L + ++AAL ++ FS+ S N + V
Sbjct: 388 LNDIASKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDAASVKNHEIGDIDIL 485
>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase [Acidaminococcus fermentans DSM 20731]
gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
DSM 20731]
Length = 544
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 158/267 (59%), Gaps = 11/267 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++N+PP+RQ+MLFSATMP + +S+KY+ P + + +++ A
Sbjct: 173 MLDMGFVDDMENIIKNVPPERQTMLFSATMPRPILSISKKYMRAPKVVAI--HKEVVTAP 230
Query: 61 GIKLYAISTTATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLAL-TSIIASEAL 117
I Y T R + L + K I+F +TK+ DE+ +AL T +E L
Sbjct: 231 TIDQYYYET-----RDKVDGLCRILDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGL 285
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ+QR+R + FR G+ +LVATDVAARGLDI N+ ++++++P+D E++VHR GR
Sbjct: 286 HGDLSQNQRDRVMKKFRSGQVDILVATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGR 345
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV- 236
TGRAG G A+ T + R ++ +ER + K + P VLE EQ+V+ + +
Sbjct: 346 TGRAGNTGVALTFITPREFRQLKLIERSIKTKIIRGTLPTDASVLERQREQIVSKMQTIL 405
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAA 263
+ + + P + L ++ +AAA
Sbjct: 406 EQDRYQDYLPIVETLEKDYDVQDIAAA 432
>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 572
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 158/272 (58%), Gaps = 7/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + ++RK+ D+P+ + ++ + E
Sbjct: 159 MLNMGFLEDMETILSQLPEERQTLMFSATMPQAIADIARKFQDDPVTVRVI--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA +IVF TKR DE+ AL +E LHG
Sbjct: 217 KVTQYYYEVKPKNKVEVMCRLLDMYAPK-LSIVFCNTKRQVDELVQALQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQVQRDRVMGSFRNGRTDILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A + + +R ++R K + P + D+ E E+V+ + + +
Sbjct: 336 RAGREGKAFSLVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKVLDQVMDILND 395
Query: 240 S--VEFFTPTAQRLIEEKGTDA-LAAALAQLS 268
+ + ++LIEE T LAAAL +++
Sbjct: 396 NDLTKMVNIIEKKLIEEDYTSMDLAAALLKMN 427
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+E+ ++Q+MLFSATMP +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMESTSEEKQTMLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL A+ R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQNYFAVKNKDKLEALC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER K + P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKIKKKELPTLEDILEKKYDNL 387
Query: 230 VATL-NGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + + E F P + L + ++AAL ++ FS+ S N + V
Sbjct: 388 LNDIASKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML-FSKEMSFDYTNNKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDAASVKNHEIGDIDIL 485
>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
44385]
Length = 823
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 148/225 (65%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P +Q+ LFSATMP+ +++LS++YL++P + + Q + A+
Sbjct: 309 MLNMGFQEDVERILADTPEHKQTALFSATMPASIRRLSKQYLEDPREVTIKSQQ--RTAD 366
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ ++ V + I+F +TK++ +E++ L + ++ A++G
Sbjct: 367 NIHQQYLLVNHHYKLDALTRILEV-TEFDAMIMFARTKQNTEELAEKLRARGFSAAAING 425
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q+QRERT++ R G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 426 DMAQNQRERTVDQLRDGRLDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTG 485
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER E + P V++V E+
Sbjct: 486 RAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDEVNET 530
>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
Length = 557
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 160/273 (58%), Gaps = 15/273 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK+++KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILSDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I + K L+ L+ +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 225 NITQRYIQVSYPRKMDALTRLLET-EQGDGMIVFVRTKQATEEVAEKLRARGFAAAAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTISQLKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAG+ GTA+L T +R + S+ER K + P VEDV E+ ++ ++
Sbjct: 344 RAGRSGTALLFVTPRERHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNA 403
Query: 239 ESVEFFTPTAQRLIEEKGTDA------LAAALA 265
++ F +RLIE+ D +AAALA
Sbjct: 404 PGIDLF----RRLIEDYERDNNVPLADIAAALA 432
>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 632
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 162/277 (58%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE PP RQ LFSATMP+ +++++ ++L+NP + +V +
Sbjct: 163 MLRMGFIDDVEWILEQTPPTRQIALFSATMPAVIRQVANRHLNNPKEVKIVTKTSTAMTI 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K + +S K L+ ++ + G I+F +TK E++ LT+ A EAL+G
Sbjct: 223 TQKYWPVS--GLHKLDALTRILEMNEHDG-MIIFVRTKAATVELAEKLTARGHACEALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DISQ+ RERT++ ++G+ +LVATDV ARGLD+ V +++Y++P D E++VHR GRTG
Sbjct: 280 DISQNLRERTVDRIKKGQIDILVATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ GTAIL +RR ++++ER E ++ P D+ + ++ + +
Sbjct: 340 RAGRSGTAILFVAHRERRMLQAIERATRQPIESMTLPTASDINAHRVNRFKQSITDAMDN 399
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
E ++FF Q +E D L AAALA ++ P
Sbjct: 400 EDLDFFLELVQSYQKENEVDPLKMAAALAHMAQGKTP 436
>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
Length = 695
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 162/279 (58%), Gaps = 13/279 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE P +Q LFSATMP+ ++K++++YL++P + +
Sbjct: 265 MLRMGFAEDVETILEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRV--KTKTTTGA 322
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K ++ ++ V G IVF +TK++ +EV+ L + + A++G
Sbjct: 323 NIRQRYMQVMHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFQAAAING 381
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ R G+ +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 382 DIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 441
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG++G AIL T ++ +R +E+ K E + P +DV S AEQ+ T
Sbjct: 442 RAGRDGEAILFVTPREKYMLRQIEKATRQKVEPMHMPTAQDVNSSRKQRFAEQITET--- 498
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSR 272
+ E + FF + E T A +AAALA ++ R
Sbjct: 499 IETEDLNFFRKIIEDYENEHDTTAEDIAAALAVIAQQGR 537
>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 634
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 156/280 (55%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E +LE+ P Q LFSATMP +K+++ K+L NP+NI + +Q E
Sbjct: 160 MLKMGFIDDIEWVLEHKPADSQLALFSATMPEQIKRVAAKHLSNPVNISIASSQ--TTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIDQRYVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVEQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL T+ + R +R++ER + + P E V E EQ+ T+NG
Sbjct: 337 RAGRTGMAILFVTNREMRMLRTIERATNSRISPMKVPSPESVAERRLSRLGEQIQETING 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F L + E TD LAAAL Q RP
Sbjct: 397 ----DLDFMKNAVAELCQQLEVDTDLLAAALLQQVQQERP 432
>gi|153938870|ref|YP_001392080.1| DEAD/DEAH box helicase [Clostridium botulinum F str. Langeland]
gi|384463072|ref|YP_005675667.1| ATP-dependent RNA helicase [Clostridium botulinum F str. 230613]
gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. Langeland]
gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum F str. 230613]
Length = 524
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 178/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN----------PLNIDL 50
ML +GF ED+E I+E+ ++Q+MLFSATMP+ +KKL+ Y+ L +D
Sbjct: 160 MLNMGFIEDIETIMESTSEEKQTMLFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL AI R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQHYFAVKNKDKLEAIC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER K P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERITKSKITKKELPTLEDILEKKYDNL 387
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S N + V
Sbjct: 388 LNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML-FSKEMSFDYTNNKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDSSSVKNHEIGDIDIL 485
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+E+ ++Q+MLFSATMP+ +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMESTSEEKQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL AI R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQHYFAVKNKDKLEAIC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER + K P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNL 387
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S + + V
Sbjct: 388 LNDITSKIEENKYEKFMPMVKTLEQNFDLSQVSAALMEML-FSKEMSFDYTNDKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDEASVKNHEIGDIDIL 485
>gi|415886177|ref|ZP_11548000.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
gi|387588830|gb|EIJ81151.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
Length = 485
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 164/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL +P +RQ++LFSATMP+ +++++ K++ NP + + E
Sbjct: 156 MLNMGFIDDIEAILAQIPKERQTLLFSATMPAPIQRMAEKFMKNPQIVRV--QSKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + +K +L+ L+ + + IVF +TKR DE+S AL +E +HG
Sbjct: 214 QIEQFYLEVHEKNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYMAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGLIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV-ATLNGVHP 238
RAGK G A+ T ++ ++ +E+ + + + + PP +++ LE + + + +
Sbjct: 333 RAGKTGMAMTFVTPREKAYLKIVEKTIKRRMDKMKPPTLDEALEGQQKATIDKIIQTIET 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++F+ A+ L+E+ DA+ A L ++ P +
Sbjct: 393 NNLQFYKQAAEELLEQH--DAVTVVSAVLKMLTKEPDT 428
>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
Length = 623
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 155/280 (55%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ PP+RQ LFSATMP +K+++ K+L N NI + + +
Sbjct: 160 MLKMGFIDDIEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASH--TTVD 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+N
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNN 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+EF +L + E TD LAAAL RP
Sbjct: 397 ----DLEFMREAVAQLCQQLEVDTDLLAAALLHQVQQERP 432
>gi|421511440|ref|ZP_15958310.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
gi|401818518|gb|EJT17718.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
UR-1]
Length = 515
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 120 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 177
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 178 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 236
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 237 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 296
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 297 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 356
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 357 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 392
>gi|403669622|ref|ZP_10934813.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC8E]
Length = 518
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 154/271 (56%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ ILEN+P +RQ++LFSATMP ++K++ ++ P ++ + E +
Sbjct: 156 MLNMGFIEDINAILENVPNERQTLLFSATMPPAIRKIADTFMTEPQSVKIKAK--ELTVD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K ILS L+ V K IVF +TKR DE+S AL+ +E +HG
Sbjct: 214 NIDQYFVKSQEREKFDILSRLLNVQ-KPELAIVFGRTKRRVDELSHALSIRGYVAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++ K VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRQFKENKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G A+ T + +R +E + + PP ++ L E V L +
Sbjct: 333 RAGKSGVAVTFVTPREMNYLRIVEETTKKRMTPLQPPTADEALVGQQEVAVQQLKAIIEK 392
Query: 239 ESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
+ + A+ L+++ D +AAAL L+
Sbjct: 393 NRLSNYRAMAEELLKDGDAVDFVAAALKSLT 423
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 26/340 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKY----------LDNPLNIDL 50
ML +GF ED+E I+ + P ++Q+MLFSATMP+ +KKL+ Y L L +D
Sbjct: 160 MLNMGFIEDIETIMASTPEEKQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDK 219
Query: 51 VGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110
+ + KL AI R I S+ + I+F +TKR DE+ A+ S
Sbjct: 220 IAQHYFAVKNKDKLEAIC------RIIDSE------EPESAIIFCRTKRGVDELVEAMQS 267
Query: 111 I-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169
E +HGD+SQ+QR TL F++ LVATDVAARG+D+ N+ +I+Y++P D E
Sbjct: 268 KGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATDVAARGIDVENISHVINYDIPQDAE 327
Query: 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
++VHR GRTGRA KEGTA + T + ++R +ER + K P +ED+LE + +
Sbjct: 328 SYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERIIKSKITKKELPTLEDILEKKYDNL 387
Query: 230 VATLNG-VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
+ + + E F P + L + ++AAL ++ FS+ S + + V
Sbjct: 388 LNDITSKIEENKYEKFMPMVKTLEQNFDLSEVSAALMEML-FSKEMSFDYTNDKLEAEVP 446
Query: 289 LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
++L S + ++ +S++ F+ D EIG I I+
Sbjct: 447 VRLFL-SVGRKDSINVKSLLTFIQDEASVRNHEIGDIDIL 485
>gi|421641007|ref|ZP_16081575.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
gi|403391874|gb|EJY89142.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
BF1]
Length = 492
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 120 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 177
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 178 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 236
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 237 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 296
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 297 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 356
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 357 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 392
>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
saccharolyticum K10]
Length = 553
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 146/234 (62%), Gaps = 8/234 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + ++++K+ +P + +V + +
Sbjct: 159 MLNMGFLEDMETILSELPEERQTVMFSATMPQAIAEIAKKFQKDPEIVKVV--KKDLTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA ++VF TK+ DE+ LAL +E LHG
Sbjct: 217 KVTQYYYDVKPKNKLEVMCRLLDMYAPK-LSVVFCNTKKQVDELVLALQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +NGFR+G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQVQRDRVMNGFRKGRTDILVATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVA 231
RAG+EG A + + +R ++R CK + V P+ ++DV E A++++
Sbjct: 336 RAGREGKAFSLVVGKEVYKLRDIQR--YCKTKIVPQPIPSIDDVTEIKADKILC 387
>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
gi|291073603|gb|EFE10967.1| DEAD/DEAH box helicase [Clostridium sp. M62/1]
gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
SM4/1]
Length = 553
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 146/234 (62%), Gaps = 8/234 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + ++++K+ +P + +V + +
Sbjct: 159 MLNMGFLEDMETILSELPEERQTVMFSATMPQAIAEIAKKFQKDPEIVKVV--KKDLTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA ++VF TK+ DE+ LAL +E LHG
Sbjct: 217 KVTQYYYDVKPKNKLEVMCRLLDMYAPK-LSVVFCNTKKQVDELVLALQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +NGFR+G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQVQRDRVMNGFRKGRTDILVATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVA 231
RAG+EG A + + +R ++R CK + V P+ ++DV E A++++
Sbjct: 336 RAGREGKAFSLVVGKEVYKLRDIQR--YCKTKIVPQPIPSIDDVTEIKADKILC 387
>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|423422457|ref|ZP_17399488.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|423433901|ref|ZP_17410882.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|423507747|ref|ZP_17484314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449086891|ref|YP_007419332.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401119847|gb|EJQ27653.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-2]
gi|401128051|gb|EJQ35755.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus
BAG4X12-1]
gi|402443146|gb|EJV75059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HD73]
gi|449020648|gb|AGE75811.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 525
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|365163836|ref|ZP_09359936.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|423415878|ref|ZP_17392998.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|423428328|ref|ZP_17405332.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|423578634|ref|ZP_17554745.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|423638228|ref|ZP_17613880.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|363614642|gb|EHL66125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus sp.
7_6_55CFAA_CT2]
gi|401094716|gb|EJQ02789.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3O-2]
gi|401126650|gb|EJQ34386.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4O-1]
gi|401220492|gb|EJR27125.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD014]
gi|401271731|gb|EJR77736.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD156]
Length = 533
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|393720957|ref|ZP_10340884.1| DEAD/DEAH box helicase [Sphingomonas echinoides ATCC 14820]
Length = 570
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 194/363 (53%), Gaps = 22/363 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ELIL+ P +R+++LFSATMP + L+++Y + L I VG +++
Sbjct: 160 MLDMGFREDLELILDASPSERRTLLFSATMPKSIVALAKRYQKDALRISTVG--EDRGHG 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I A++ + +L+ ++ + I+F T+ + + L A+ AL G
Sbjct: 218 DISYQAVTVAPADIENAVVNLLRLH-EAETAILFCATRDNVRHLHAGLIERGFAAVALSG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ++R + R + V VATDVAARGLD+P++ L+IH ELP D ET HRSGRTG
Sbjct: 277 EHSQNERNSAMQALRDKRARVCVATDVAARGLDLPSLSLVIHVELPRDAETLQHRSGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK+GTAIL+ ++R V + R E+ + P V+D+ ++ E+++A L + P
Sbjct: 337 RAGKKGTAILIVPYQRKRRVEMMLRGARIAVEWKNAPTVDDIRKADRERLLAML--MEPV 394
Query: 240 SVEFFT-PTAQRLIEEKGTDALAAALAQ------------LSGFSRPPSSRSLINHEQGW 286
+E A +L+E+K + +AAAL Q LS S P+ + +H +G+
Sbjct: 395 EIEDDDRELAAKLLEQKSPEEIAAALVQSLRSKMPAPEEMLSQSSEKPAGKE--HHREGF 452
Query: 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV-CIDTVILLYFYA 345
++ R R R ++ + +E+G I I A++ + + + I F A
Sbjct: 453 DDVKWFRMDIGRRQNADPRWILPLICRRGHITKNEVGAIRIAANETMFQVPSAIAAKFMA 512
Query: 346 SVR 348
+V+
Sbjct: 513 AVK 515
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 144/222 (64%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ ++++S YL++P + + +
Sbjct: 225 MLNMGFQEDVERILEDTPEDKQVALFSATMPNAIRRISHDYLNDPEEVTVKAKT--RTNT 282
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T +K ++ ++ V + IVF +TK++ +E++ L + ++ A++G
Sbjct: 283 NITQRYLFTAHRNKLDAITRVLEV-TEFDAMIVFVRTKQETEEIAEKLRARGFSAAAING 341
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ R G+ +LVATDVAARGLD+ + +++Y++PND E++VHR GRTG
Sbjct: 342 DIAQQQRERTVDMLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTG 401
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L T +RR +RS+E+ G K E + P V++V
Sbjct: 402 RAGRTGEALLFVTPRERRMLRSIEKVTGAKIEEMDLPTVDEV 443
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 157/271 (57%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ P RQ++LFSATMP +++L+RKYL NP + + ++DE
Sbjct: 159 MLDMGFIDDIEAIIKETPETRQTLLFSATMPHEIQQLARKYLKNPRLVAV--SKDELTVP 216
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALH 118
I ++Y T ++ L T+ I+F +TKR DE+ +L T +E LH
Sbjct: 217 SIEQVYYEVREKTKLESLCRVLETIDVT--LAIIFCKTKRGVDELVASLETRGYQAEGLH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QR + + F+ G+ LVATDVAARGLDI NV +I+Y++P DPE +VHR GRT
Sbjct: 275 GDLTQAQRNKVMRKFKNGQVDYLVATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVH 237
GRAG+ G AI + R +R +E+ +G + + P + D+ E Q++ + N ++
Sbjct: 335 GRAGRSGKAITFIVPEEYRQLRLIEKIIGARIARKNLPSIADIFERQKVQMIDKVANTIN 394
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
++ + Q L + +A+A +L+
Sbjct: 395 GGQLDIYRDIVQELAADYNLIDIASAALKLA 425
>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 599
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 160/280 (57%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ KYL P++I + + E
Sbjct: 161 MLKMGFIDDIEWILEHTPQERQLALFSATMPEQIKRVANKYLQTPVHISIAASH--TTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +L+ATDVAARGLD+ + +I+Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL T + R +R++ER + ++ P E V E EQV T++
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDN 397
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
ES++F +L + E T+ LAAAL + RP
Sbjct: 398 ---ESLDFMHGAVAQLCQQLEVDTEVLAAALLNMVQQERP 434
>gi|30260423|ref|NP_842800.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47525504|ref|YP_016853.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49183266|ref|YP_026518.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
str. A2012]
gi|118475995|ref|YP_893146.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|376264267|ref|YP_005116979.1| cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|386734107|ref|YP_006207288.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
gi|81696998|sp|Q6HPE6.1|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|81715465|sp|Q81VG0.1|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|134039177|sp|A0R8U6.1|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
4342]
gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
gi|364510067|gb|AEW53466.1| Cold-shock DEAD-box protein A [Bacillus cereus F837/76]
gi|384383959|gb|AFH81620.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus anthracis str.
H9401]
Length = 528
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|392400358|ref|YP_006436958.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis Cp162]
gi|390531436|gb|AFM07165.1| DEAD-box helicase [Corynebacterium pseudotuberculosis Cp162]
Length = 660
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|386740147|ref|YP_006213327.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 31]
gi|384476841|gb|AFH90637.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 31]
Length = 660
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|383313989|ref|YP_005374844.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis P54B96]
gi|380869490|gb|AFF21964.1| DEAD-box helicase [Corynebacterium pseudotuberculosis P54B96]
Length = 638
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|379715095|ref|YP_005303432.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 316]
gi|387140417|ref|YP_005696395.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|355392208|gb|AER68873.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653801|gb|AFB72150.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 316]
Length = 660
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|355670672|ref|ZP_09057419.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
gi|354816109|gb|EHF00698.1| hypothetical protein HMPREF9469_00456 [Clostridium citroniae
WAL-17108]
Length = 569
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 159/272 (58%), Gaps = 7/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + +++K+ DNP+ + ++ + E
Sbjct: 159 MLNMGFLEDMETILSQLPEERQTLMFSATMPQAIADIAKKFQDNPVTVRVI--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA +IVF TKR D++ AL +E LHG
Sbjct: 217 KVTQYYYEVKPKNKVEVMCRLLDMYAPK-LSIVFCNTKRQVDDLVQALQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++ FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQIQRDRVMDSFRNGRTEILVATDVAARGIDVGDVEAVFNYDVPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A + + +R ++R K + P + D+ E E+V+ + + +
Sbjct: 336 RAGREGKAFSLVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKVLDQVMDILND 395
Query: 240 S--VEFFTPTAQRLIEEKGTD-ALAAALAQLS 268
S + ++L+EE T LAAAL +++
Sbjct: 396 SDLTKMVNIIEKKLMEEDYTSLDLAAALLKMN 427
>gi|387136343|ref|YP_005692323.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 42/02-A]
gi|348606788|gb|AEP70061.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 42/02-A]
Length = 659
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|384506502|ref|YP_005683171.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis C231]
gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
Length = 650
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288396|ref|YP_005122937.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 3/99-5]
gi|384504410|ref|YP_005681080.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 1002]
gi|384508590|ref|YP_005685258.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis I19]
gi|384510681|ref|YP_005690259.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
gi|341824620|gb|AEK92141.1| DEAD-box helicase [Corynebacterium pseudotuberculosis PAT10]
gi|371575685|gb|AEX39288.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 3/99-5]
Length = 660
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|423553834|ref|ZP_17530161.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
gi|401182654|gb|EJQ89786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
Length = 528
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|384184309|ref|YP_005570205.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402562678|ref|YP_006605402.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|410672597|ref|YP_006924968.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|423364241|ref|ZP_17341734.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|423526472|ref|ZP_17502917.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|423565415|ref|ZP_17541691.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|452196603|ref|YP_007476684.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
Bt407]
gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 200]
gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401073132|gb|EJP81571.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD022]
gi|401193994|gb|EJR00992.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MSX-A1]
gi|401791330|gb|AFQ17369.1| ATP-dependent RNA helicase [Bacillus thuringiensis HD-771]
gi|402456266|gb|EJV88042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB1-1]
gi|409171726|gb|AFV16031.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452101996|gb|AGF98935.1| Cold-shock DEAD-box protein A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 529
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ ++L +P+++ + +Q E
Sbjct: 160 MLKMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIESSQ--TTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+NG
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETING 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL Q RP
Sbjct: 397 ----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|423387287|ref|ZP_17364541.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|434378873|ref|YP_006613517.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
IBL 4222]
gi|401629250|gb|EJS47075.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-2]
gi|401877430|gb|AFQ29597.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 521
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
Length = 514
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 137 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 195 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 314 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 374 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 409
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 123/191 (64%), Gaps = 2/191 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E +P +RQ+MLFSATMP + LSR+YL+ P N+ + + +
Sbjct: 180 MLDLGFLPDIERIIELVPAERQTMLFSATMPGEIVALSRRYLNRPTNVRAEVHTESEATP 239
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
+ + T K +L+ L+ +G T+VF QTKR D ++ LT A+ A+HG
Sbjct: 240 QVTQHVFQTHPMDKPEVLARLLQANGRG-LTMVFCQTKRACDRIAADLTRRGFAAAAVHG 298
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRER L FR GK VLVATDVAARGLD+ +V +I+YE P+ ET VHR GRTG
Sbjct: 299 DLGQGQRERALRAFRSGKVDVLVATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTG 358
Query: 180 RAGKEGTAILM 190
RAG+EGTA+ +
Sbjct: 359 RAGREGTAVTL 369
>gi|419860593|ref|ZP_14383234.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387982987|gb|EIK56486.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 667
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 511
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 168 MLNMGFIEDIEAILTDVPETHQTLLFSATMPEPIRRIAERFMTEPQHIKV--KAKEVTMP 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 226 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 285 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+L T + ++++ER K + + P +++ LE + L + +
Sbjct: 345 RAGKTGLAMLFVTPREMGQLKNIERTTKRKMDRMKAPTLDEALEGQQRLIAEKLQSAIEN 404
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++A A L ++ P +
Sbjct: 405 DNLSYYKRIAEEMLEE--NDSVAVVAAALKMMTKEPDT 440
>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
gi|81689748|sp|Q63GX5.1|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
Length = 528
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|389850156|ref|YP_006352391.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 258]
gi|388247462|gb|AFK16453.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 258]
Length = 660
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 147/229 (64%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEK 446
>gi|376287519|ref|YP_005160085.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
gi|371584853|gb|AEX48518.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae BH8]
Length = 680
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423632143|ref|ZP_17607889.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401262038|gb|EJR68185.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD154]
Length = 517
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|423646358|ref|ZP_17621928.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
gi|401287656|gb|EJR93433.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD169]
Length = 525
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|423590490|ref|ZP_17566552.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|423644958|ref|ZP_17620574.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|423653166|ref|ZP_17628465.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
gi|146291075|sp|Q81IT9.2|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST24]
gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-Cer4]
gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|401220472|gb|EJR27106.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD045]
gi|401268292|gb|EJR74342.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD166]
gi|401302693|gb|EJS08265.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD200]
Length = 533
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 161/280 (57%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ ++L +P+++ + +Q E
Sbjct: 160 MLKMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIESSQ--TTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+NG
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETING 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL Q RP
Sbjct: 397 ----DLDFMKEAVAQLCQQLEVDTDLLAAALLQQVQQERP 432
>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 161/277 (58%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P Q++LFSATMP+ +++++ K+++ P + + E
Sbjct: 156 MLNMGFIEDIEKILSNVPENHQTLLFSATMPTPIRRIAEKFMNEPKVVKVQAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + K IL+ L+ + + I+F +TKR DE+S AL +++ +HG
Sbjct: 214 NITQYYLEVQEKRKFDILTRLLDMQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T + + ++ER K E ++PP +++ +E L V
Sbjct: 333 RAGKMGAAMTFVTPRETGQLHNIERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQ 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
++ ++ A+ L+EE + +L AA +L F++ P+
Sbjct: 393 GNLSYYKQLAEELLEEHDSVSLVAAAIKL--FTKEPN 427
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 13/299 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P RQ++LFSATMP + ++R Y + + +V + E
Sbjct: 158 MLNMGFREDIETILKEMPEDRQTLLFSATMPQPIMDIARTYQKDATIVKVV--KKELTVP 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y +K +LS L+ +Y+ + +VF TKR DE+ AL+ +E LHG
Sbjct: 216 KIEQYYYEVRPKNKVDVLSRLLDMYSPK-RCLVFCNTKRQVDELVTALSGRGFFAEGLHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++ FR GK +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 275 DLKQQQRDRVMSSFRTGKAEILVATDVAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G A + + +R ++R K + + P V DV AE+++ +N +
Sbjct: 335 RAGRTGRAFTLVVGKEVYKLRDIQRYCKTKIKVMPIPSVNDVTAVKAEKILDRINELMDA 394
Query: 239 ESVEFFTPTAQRLIEEKGTDAL---AAALAQLSGFSRPPSSRSLINH-----EQGWVTL 289
E + + I E AL AA L G P +++ + EQG V L
Sbjct: 395 EDLTKMISIIEAKINESDYTALDVAAAFLKMAMGSDSQPEEQAVPDFGDTGAEQGMVRL 453
>gi|38233613|ref|NP_939380.1| DEAD/DEAH box helicase [Corynebacterium diphtheriae NCTC 13129]
gi|376242613|ref|YP_005133465.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
gi|372105855|gb|AEX71917.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae CDCE 8392]
Length = 680
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
Length = 516
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|376254085|ref|YP_005142544.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
gi|372117169|gb|AEX69639.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae PW8]
Length = 705
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|376284519|ref|YP_005157729.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
gi|371578034|gb|AEX41702.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 31A]
Length = 680
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|423456146|ref|ZP_17432999.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
gi|401131812|gb|EJQ39461.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
Length = 520
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|423614480|ref|ZP_17590337.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
gi|401237929|gb|EJR44375.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD107]
Length = 533
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
Length = 719
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 162/279 (58%), Gaps = 13/279 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE P +Q LFSATMP+ ++K++++YL++P + +
Sbjct: 289 MLRMGFAEDVETILEGTPDAKQVALFSATMPNSIRKIAQQYLNDPTEVRV--KTKTTTGA 346
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K ++ ++ V G IVF +TK++ +EV+ L + + A++G
Sbjct: 347 NIRQRYMQVMHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEVADKLKARGFQAAAING 405
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ R G+ +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 406 DIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 465
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG++G AIL T ++ +R +E+ K E + P +DV S AEQ+ T
Sbjct: 466 RAGRDGEAILFVTPREKYMLRQIEKATRQKVEPMHMPTAQDVNSSRKQRFAEQITET--- 522
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSR 272
+ E + FF + E T A +AAALA ++ R
Sbjct: 523 IETEDLNFFRKIIEDYENEHDTTAEDIAAALAVIAQQGR 561
>gi|385807275|ref|YP_005843672.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis 267]
gi|383804668|gb|AFH51747.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 267]
Length = 662
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 149/234 (63%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+ ++
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSI 451
>gi|376248300|ref|YP_005140244.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|376251090|ref|YP_005137971.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|376256907|ref|YP_005144798.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
gi|372112594|gb|AEX78653.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC03]
gi|372114868|gb|AEX80926.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC04]
gi|372119424|gb|AEX83158.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae VA01]
Length = 682
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|376290134|ref|YP_005162381.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
gi|372103530|gb|AEX67127.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae C7 (beta)]
Length = 682
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|376293035|ref|YP_005164709.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
gi|372110358|gb|AEX76418.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC02]
Length = 682
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
Length = 631
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/260 (39%), Positives = 156/260 (60%), Gaps = 6/260 (2%)
Query: 1 MLAVGFEEDVELILENLPPKR--QSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEK 57
ML +GF ED+E IL + Q++LFSAT+P WV +S+++L IDLVG++ +K
Sbjct: 191 MLNMGFVEDIETILNHAKDNANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQK 250
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII--AS 114
+ ++ I+ + + ++ DLI G G+ IVF TKRD E+ AL + +
Sbjct: 251 ASGSVQHMLINCQWSERTDLVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGA 310
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ALHGD++Q QRE L+GFR+ KF LVATDVAARGLDI V+L++ E P + ET++HR
Sbjct: 311 KALHGDVNQSQREVVLDGFRKNKFQTLVATDVAARGLDISGVELVVQCEPPKEAETYIHR 370
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
SGRTGR G G + + T + ++ER G KF + PP +++ ++A+ V+ +
Sbjct: 371 SGRTGRGGATGICVTLCTPRNEWAIPNIERKGGFKFVRIGPPQPAEMVAAAAKIVIQQVR 430
Query: 235 GVHPESVEFFTPTAQRLIEE 254
VH + + F A+ L+ E
Sbjct: 431 AVHKGAAKMFMDAARELLAE 450
>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
DSM 5476]
gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
DSM 5476]
Length = 563
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 182/343 (53%), Gaps = 19/343 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL+ P +RQ++LFSATMP + L+++Y +P I++ N+ + +
Sbjct: 161 MLNMGFREDVETILKQTPDERQTILFSATMPPAILALTKQYQKDPQLIEI--NRKQVTLD 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ K L +I Y +I+F TKR DEV+ L S ++E LHG
Sbjct: 219 NIEQQFYEVPMGRKMDALG-IILQYHDPALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR + ++ F++G+ +LVATDVAARG+D+ NVD +I+Y++P + E +VHR GRTG
Sbjct: 278 DMKQSQRTKVMDSFKRGRTKILVATDVAARGIDVNNVDYVINYDVPQNQEYYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLE---RDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RAGKEG A+ + S RR V L R + S P +D+ S E VVA +
Sbjct: 338 RAGKEGKAVTI--CSGRRQVDELYHIVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQK 395
Query: 237 HPESVE-FFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295
+ E ++ A+ L+++ AA+A F RP + I + LQ R S
Sbjct: 396 LAAAEELYYKEVAEELVQKGYNPTTIAAVALEMAFGRPKTDFPEIKQFRPKAGLQGPRGS 455
Query: 296 AFSR--------GFMSARSVMGFLSDVYPTAADEIGKIHIIAD 330
F + ++ ++G +++ + +IGKI I D
Sbjct: 456 -FRKIEINIGRENHIAPNHIVGAITERSDLSGRDIGKIEIYDD 497
>gi|375292864|ref|YP_005127403.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
gi|371582535|gb|AEX46201.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae INCA 402]
Length = 676
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 142/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RAGRSGEAILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 443
>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
10876]
Length = 528
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 510
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 137 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 195 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 314 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 374 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 409
>gi|375140808|ref|YP_005001457.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359821429|gb|AEV74242.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 562
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 138/222 (62%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK++ KYL P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITSKYLHGPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I + K L+ L+ V +G IVF +TK+ +EV+ L + ++ A++G
Sbjct: 225 NITQRYIQVSYPRKMDALTRLLEV-EQGDAMIVFVRTKQATEEVAEKLRARGFSAAAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+N + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTINSLKDGSLDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ GTA+L T +R ++S+ER K + P V+DV
Sbjct: 344 RAGRSGTALLFVTPRERHLLKSIERVTRQKLVEIELPSVDDV 385
>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|419823024|ref|ZP_14346587.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
gi|388472831|gb|EIM09591.1| ATP-dependent RNA helicase [Bacillus atrophaeus C89]
Length = 497
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 158/270 (58%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 157 MLNMGFIEDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE+S AL +E +HG
Sbjct: 215 NIQQFYLEVHERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYTAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+QG VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T ++ +R++E+ K + + P +++ +E + V L + E
Sbjct: 334 RAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISE 393
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLS 268
++ F+ A L+E+ + AA ++S
Sbjct: 394 NNLNFYMTAAAELLEDHDAVTVVAAAIKMS 423
>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
Length = 527
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|387138413|ref|YP_005694392.1| DEAD/DEAH box helicase [Corynebacterium pseudotuberculosis CIP
52.97]
gi|349734891|gb|AEQ06369.1| DEAD-box helicase [Corynebacterium pseudotuberculosis CIP 52.97]
Length = 829
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 149/234 (63%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+ G AIL T +RR +RS+ER + + P V++V ES E+ ++
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNESRKEKFADSI 451
>gi|423473254|ref|ZP_17449996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
gi|402426406|gb|EJV58531.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
Length = 535
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 141/225 (62%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL+ LP +RQ +LFSATMPS +++LS++YL P I + EK A
Sbjct: 198 MLRMGFIDDVEWILDQLPEERQVVLFSATMPSEIRRLSKRYLREPAEITI--KTKEKEAR 255
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ + K L+ ++ G I+F +TK VS +L + A L+G
Sbjct: 256 RIRQRCITLQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLNVSESLEAAGHDVAVLNG 314
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 315 DVPQNQRERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTG 374
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR V +LER VG + E ++ P ++ +S
Sbjct: 375 RAGRSGEAILFVTPRERRFVNNLERAVGQEIEPMAIPSNAEINQS 419
>gi|423556774|ref|ZP_17533077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
gi|401194089|gb|EJR01081.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
Length = 535
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + +K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKNKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|402297853|ref|ZP_10817596.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726922|gb|EJT00129.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 509
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 149/256 (58%), Gaps = 5/256 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P +RQ++LFSATMP ++KL+++++ P I + E E
Sbjct: 156 MLNMGFIEDIETILKEIPNERQTLLFSATMPKRIEKLAQQFMKEPQTIAVKAK--EVTME 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + I K L L+ ++ IVF +TKR DE+S AL +E +HG
Sbjct: 214 NIEQFYIELHEKQKFDALCRLVDIHTPE-LAIVFGRTKRRVDELSEALIKRGYRAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R+ L F+ G +LVATDVAARGLDI V + +++LP DPE++VHR GRTG
Sbjct: 273 DLNQAKRDSVLRKFKNGLIEILVATDVAARGLDISGVTHVYNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T S++ V ++E+ K P E+ +E + V+A L +
Sbjct: 333 RAGKSGMAVTFATPSEKEHVAAIEKTSKKKMTKQPMPTFEEAMEGQQKLVLAQLREKLDQ 392
Query: 239 ESVEFFTPTAQRLIEE 254
E F+ A+ L++E
Sbjct: 393 EDTNFYRAIAKDLLQE 408
>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase [Exiguobacterium sibiricum 255-15]
gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
255-15]
Length = 530
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LPP RQ++LFSATMP ++K++ +++ P +I + E E
Sbjct: 156 MLNMGFVEDIEKILGTLPPTRQTLLFSATMPPQIRKIADRFMTTPTHIKVKAK--EMTVE 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I + K +L LI + +I+F +TK+ DE++ L ++ LHG
Sbjct: 214 NIDQSFIELKESQKFDVLCRLIDTDSPE-LSIIFGRTKKRVDEMTEGLIQRGYTADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R++ + F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRDQVIRRFKKGTIDILVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G+AI T + ++++ER K P ++++LE + + L V
Sbjct: 333 RAGKTGSAITFVTPREFGQIKTIERVTNKKMSRRHAPTLDEILEGNLKLAAQELIKRVEA 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ + +T AQ L+EE +A+ A L G ++ P +
Sbjct: 393 KNSQEYTTLAQELLEE--YEAVELIAAALKGLTKEPDA 428
>gi|358065981|ref|ZP_09152515.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
gi|356695844|gb|EHI57469.1| hypothetical protein HMPREF9473_04578 [Clostridium hathewayi
WAL-18680]
Length = 563
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 159/276 (57%), Gaps = 15/276 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMPS ++ +++K+ NP+ + +V + E
Sbjct: 159 MLNMGFLEDMETILSQLPEERQTVMFSATMPSAIQDIAKKFQKNPVIVKVV--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA ++ F TKR DE+ L +E LHG
Sbjct: 217 KVTQYYYEVKPKTKLEVMCRLLDLYAPK-LSVAFCNTKRQVDELVQELQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR GK +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQIQRDRVMNSFRNGKTEILVATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDV----LESSAEQVVATL 233
RAG+EG A + +R ++R CK + V P+ + D+ ++ EQV +
Sbjct: 336 RAGREGIAFSFVVGKEVYKLRDIQR--YCKTKIVPQPIPSLNDITAIKVDKILEQVADII 393
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDA-LAAALAQLS 268
N + E ++L+EE T LAAAL ++S
Sbjct: 394 N--DNDLSEMVNLIEKKLLEEDYTSMDLAAALLKMS 427
>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 605
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 159/280 (56%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ KYLDNP+++ + E
Sbjct: 161 MLKMGFIDDIEWILEHTPQERQLALFSATMPEQIKRVANKYLDNPVHVKIAATT--TTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 TIEQRFVQVSQHNKLEALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +++ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAVDQLKRGKLDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL T + R +R++ER + + P E V E EQV ++
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATKSRISPMDVPSPETVTERRLSRLGEQVAEIISK 397
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+S++F +L + E TD LAAAL Q RP
Sbjct: 398 ---DSLDFMKGAVAQLCQQLEVDTDILAAALLQQVQKERP 434
>gi|423525845|ref|ZP_17502297.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
gi|401165636|gb|EJQ72953.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
Length = 533
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + +K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKNKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIQN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 ENLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
Length = 527
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + ++ P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMNAPTLDEALEGQQRLIAEKLQSTIES 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 131/205 (63%), Gaps = 4/205 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ++ IL P RQ++LFSATMP +++LS ++L +P+ + ++ +K A+
Sbjct: 168 MLDIGFMPAIKRILAMTPATRQTLLFSATMPKEIRQLSDRHLTDPIEVSVI--PAKKTAD 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + +K L+ LI KG + IVFT+TKR AD+ + L I + A+HG
Sbjct: 226 RVEHSVMHMQPGAKMGALASLIRDR-KGERVIVFTRTKRGADKAAKRLEGDGINAAAIHG 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ QRER L GFR G VL+ATD+AARG+D+P V L+++YELPN PE +VHR GRT
Sbjct: 285 NKSQGQRERALAGFRAGTVPVLIATDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTA 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLER 204
RAG EGTA+ +R +R +E+
Sbjct: 345 RAGAEGTAVTFCAPDERSLLRDIEK 369
>gi|374340782|ref|YP_005097518.1| DNA/RNA helicase [Marinitoga piezophila KA3]
gi|372102316|gb|AEX86220.1| DNA/RNA helicase, superfamily II [Marinitoga piezophila KA3]
Length = 533
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 157/267 (58%), Gaps = 7/267 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLA 59
ML +GF +DVE IL N P K+Q +LFSATMPS + KL++KY+ N I + Q +L
Sbjct: 159 MLDMGFIDDVEEILSNTPEKKQILLFSATMPSRILKLAKKYMSNYKIISVKPEQLTTELT 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
E I + K L +I + + +VF +TK D D VS L ++EALH
Sbjct: 219 EQI---YFEVNESDKFEALCRIIDIEPEF-YGLVFCRTKVDVDTVSNRLIDRGYSAEALH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QRER L F+ + +LVATDVAARG+DI ++ +I+Y LP +PE++VHR GRT
Sbjct: 275 GDLSQYQRERILRKFKTKRANILVATDVAARGIDISDLTHVINYSLPQNPESYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-H 237
GRAGKEGTAI T + R + ++R + P ++DV+ES ++ +N +
Sbjct: 335 GRAGKEGTAITFVTPEEYRKLLFIKRISKSDIKKKRIPKIKDVIESKKNRIKTEINNILE 394
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAAL 264
E+ E + A ++E + + + AA+
Sbjct: 395 SETYENYLELANEMLENRNANEVLAAV 421
>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
Length = 507
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 156/271 (57%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ ILEN+P +RQ++LFSATMP ++K++ ++ +P + + E +
Sbjct: 156 MLNMGFIDDINSILENVPSERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAK--ELTVD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K +LS L+ V+ + I+F +TKR DE++ AL+ +E +HG
Sbjct: 214 NIDQYFVKSAEREKFDVLSRLLNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++ K +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T + +R +E + + PP ++ LE V TL G+
Sbjct: 333 RAGKSGLAVTFVTPREMGYLRIVEETTKKRMTPLRPPTTDEALEGQQRLAVETLEGLIAN 392
Query: 240 SV--EFFTPTAQRLIEEKGTDALAAALAQLS 268
+ ++ T A+ L D +AAAL L+
Sbjct: 393 NNLGDYRTFAAELLENHDAVDVVAAALRSLT 423
>gi|19552380|ref|NP_600382.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
ATCC 13032]
gi|385143290|emb|CCH24329.1| putative helicase [Corynebacterium glutamicum K051]
Length = 732
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 143/222 (64%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YL+NP I + + +
Sbjct: 257 MLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNT 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL T +RR +RS+ER + P V+ V
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQV 475
>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
Length = 507
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 159/276 (57%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL P K+Q++LFSATMP+ ++ ++ +++ P+N+ + E
Sbjct: 156 MLNMGFIEDIEKILAETPEKKQTLLFSATMPAPIRAIAERFMSEPVNVKVQAK--ELTIS 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + I+F +TKR DE+S AL ++E +HG
Sbjct: 214 NIQQFYVEVPEKKKFDTLTRLLDIQSPE-LAIIFGRTKRRVDELSDALNVRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G AI + + + +ER K + + P +++ LE + + L V
Sbjct: 333 RAGKSGLAITFVSPREVSYLHHVERVTKRKMDKLKAPTLDEALEGQQKMSMEKLTQAVEA 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
+++ F+ A++L+EE DA+ A L F++ P
Sbjct: 393 KNLGFYRNAAEQLLEEH--DAITLVSAALKLFTKEP 426
>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
ATCC 13032]
Length = 732
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 143/222 (64%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YL+NP I + + +
Sbjct: 257 MLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNT 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL T +RR +RS+ER + P V+ V
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQV 475
>gi|333908310|ref|YP_004481896.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478316|gb|AEF54977.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 616
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 164/280 (58%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE P +RQ LFSATMPS +++++ ++L+NP + +V
Sbjct: 163 MLRMGFIDDVEWILEQTPSERQIALFSATMPSVIRQVANRHLNNPKEVKIVTKTSTATTI 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K + +S K L+ ++ + G I+F +TK E++ LT+ A EAL+G
Sbjct: 223 SQKYWQVS--GLHKLDALTRILEMNEHDG-MIIFVRTKAATVELAEKLTARGHACEALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DISQ+ RERT++ ++G+ +LVATDV ARGLD+ V +++Y++P D E++VHR GRTG
Sbjct: 280 DISQNLRERTVDRIKKGQIDILVATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNG 235
RAG+ GTAIL +RR ++++ER E ++ P D+ E +++ T++
Sbjct: 340 RAGRSGTAILFVAHRERRMLQAIERATRQPIEKMNLPTASDINEQRVSRFKQRITDTMDN 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
E+++FF Q ++ D L AAALA ++ P
Sbjct: 400 ---ENLDFFLELVQSYQKDNEVDPLKMAAALAHMAQGKTP 436
>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
gi|417970048|ref|ZP_12610983.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045730|gb|EGV41400.1| hypothetical protein CgS9114_03408 [Corynebacterium glutamicum
S9114]
Length = 729
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 143/222 (64%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YL+NP I + + +
Sbjct: 257 MLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNT 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL T +RR +RS+ER + P V+ V
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQV 475
>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 592
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 156/259 (60%), Gaps = 7/259 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+++ILE++P +RQ +LFSAT+ + ++ KY +NP+ +++V E
Sbjct: 161 MLNMGFREDIDVILESVPEERQFVLFSATLAKAILDIANKYQNNPITVNVV--HKELTVP 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALH 118
+K Y + ++K +LS LI A K ++VF TKR D++ L + ++E+LH
Sbjct: 219 TVKQYYLEVRDSNKVEVLSRLID--ANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLH 276
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QR+ ++ FR G +L+ATDVAARG+D+ +VD + +Y++P+D E +VHR GRT
Sbjct: 277 GDMKQLQRDNVMSRFRNGLIDILIATDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRT 336
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRA +EG + + +R ++R K + + PP +ED+ E+ ++ + +
Sbjct: 337 GRAQREGVSYTFAAGKELAKLRDIQRYTKSKIKLIKPPSIEDIQENKLSGIIDDVKAILA 396
Query: 239 E-SVEFFTPTAQRLIEEKG 256
E + +T ++++EE G
Sbjct: 397 EGKLTKYTGFIEKMLEEVG 415
>gi|452974255|gb|EME74076.1| DEAD/DEAH box helicase [Bacillus sonorensis L12]
Length = 487
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P Q++LFSATMP+ +K+++ ++++NP +I + E
Sbjct: 157 MLNMGFIEDIESILSNVPEDHQTLLFSATMPAPIKRIAERFMNNPEHIKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 215 NIQQFYLEVHERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+QG VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ +E + V + +
Sbjct: 334 RAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIED 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P +
Sbjct: 394 NNLNFYMSAAAELLEDH--DAVTVVAAAIKMMTKEPDN 429
>gi|424736339|ref|ZP_18164799.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
gi|422949942|gb|EKU44315.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZB2]
Length = 507
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 156/271 (57%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ ILEN+P +RQ++LFSATMP ++K++ ++ +P + + E +
Sbjct: 156 MLNMGFIDDINSILENVPSERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAK--ELTVD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K +LS L+ V+ + I+F +TKR DE++ AL+ +E +HG
Sbjct: 214 NIDQYFVKSAEREKFDVLSRLLNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++ K +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T + +R +E + + PP ++ LE V TL G+
Sbjct: 333 RAGKSGLAVTFVTPREMGYLRIVEETTKKRMTPLRPPTTDEALEGQQRLAVETLEGLIAN 392
Query: 240 SV--EFFTPTAQRLIEEKGTDALAAALAQLS 268
+ ++ T A+ L D +AAAL L+
Sbjct: 393 NNLGDYRTFAAELLENHDAVDVVAAALRSLT 423
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 151/265 (56%), Gaps = 11/265 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL P ++Q++LFSATMP +++L +YL VG Q +
Sbjct: 156 MLDMGFIEDIEEILSKTPKEKQTLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQ--LITP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+K I + K L L+ + +G TIVF +TKRDA ++ L I + A+HG
Sbjct: 214 KVKQRIILVRSEDKIKALEKLLKEH-EGVSTIVFVKTKRDAADIEKELQRRGINARAIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QRE + FR+GK VLVATDVAARG+DI +V L+I+YELP +PE++VHR GRTG
Sbjct: 273 DLSQRQREFVMRAFREGKVKVLVATDVAARGIDIKDVGLVINYELPENPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG AI + ++R + ++ G + E V V E E + A N + P
Sbjct: 333 RAGREGLAISLVAEPEKRRLYRIKGLKGVRPERFR---VNTVKELKKELLEADANSLPP- 388
Query: 240 SVEFFTPTAQRLIEEKGTDALAAAL 264
+ A L+ E+ + L A L
Sbjct: 389 ---YVKRLASELLSERSPEELVAVL 410
>gi|418245162|ref|ZP_12871569.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
gi|354510570|gb|EHE83492.1| putative helicase [Corynebacterium glutamicum ATCC 14067]
Length = 732
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 143/222 (64%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P ++Q LFSATMP+ +++LS++YL+NP I + + +
Sbjct: 257 MLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRLSKQYLNNPAEITV--KSETRTNT 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 315 NITQRFLNVAHRNKMDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 373
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + ++++++PND E++VHR GRTG
Sbjct: 374 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTG 433
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL T +RR +RS+ER + P V+ V
Sbjct: 434 RAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQV 475
>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 624
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 6/218 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL-VGNQDEKLA 59
ML +GF +DVE ILE LP +RQ +LFSATMP +++LS++YL++P + + +QD KL
Sbjct: 226 MLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL- 284
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LH 118
I+ AI+ + K L ++ G I+F +TK V+ L + A L+
Sbjct: 285 --IRQRAITVPMSHKLEALQRVLDACGGEG-VIIFARTKVITLTVAETLEAAGHQVAVLN 341
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QRERT+ R G VLVATDVAARGLD+ + L+I+Y++P D E +VHR GRT
Sbjct: 342 GDVPQNQRERTVERLRSGSVDVLVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRT 401
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
GRAG+ G A+L T +RR +R+LER G E + P
Sbjct: 402 GRAGRTGEAVLFMTPRERRFIRNLERATGQPIEMMEVP 439
>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 161/274 (58%), Gaps = 11/274 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + +++RK+ P+ + +V + E
Sbjct: 186 MLNMGFLEDMETILSQLPEERQTLMFSATMPPAIAEIARKFQKEPVTVRVV--KKELTVP 243
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA +IVF TK+ DE+ AL +E LHG
Sbjct: 244 KVTQYYYEVKPKNKVEVMCRLLDLYAPK-LSIVFCNTKKQVDELVQALQGRGYFAEGLHG 302
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 303 DLKQMQRDRVMNSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTG 362
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV--SPPVVEDVLESSAEQVVATLNGVH 237
RAG+EG A + + +R ++R CK + + P + D+ E E+++ + V
Sbjct: 363 RAGREGKAFSLVVGREVYKLRDIQR--YCKTRIIPQAIPSLNDITEIKVEKILDQVEEVM 420
Query: 238 PES--VEFFTPTAQRLIEEKGTD-ALAAALAQLS 268
+S + ++L+EE+ T LAAAL +++
Sbjct: 421 NDSDLSKMVGIIEKKLMEEEYTSLDLAAALLKMN 454
>gi|403385798|ref|ZP_10927855.1| ATP-dependent RNA helicase exp9 [Kurthia sp. JC30]
Length = 511
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 156/272 (57%), Gaps = 8/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ ILEN+P +RQ++LFSATMP ++K++ ++ P ++ + E +
Sbjct: 156 MLNMGFIEDINAILENVPAERQTLLFSATMPPAIRKIADTFMTEPQSVKIKAK--ELTVD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALH 118
I+ + + + K ILS L+ V K IVF +TKR DE+S AL+ IA E +H
Sbjct: 214 NIEQFFVKSQEREKFDILSRLLNVQ-KPELAIVFGRTKRRVDELSHALSIRGYIA-EGIH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ +R L F++ K VLVATDVAARGLDI V + ++++P DPE++VHR GRT
Sbjct: 272 GDLSQAKRLSVLRQFKENKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VH 237
GRAGK G A+ T + +R +E + + PP ++ L E V L V
Sbjct: 332 GRAGKSGVAVTFVTPREMSYLRIVEETTKKRMTPLKPPTADEALVGQQEVAVEQLKAIVE 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
+ + A+ L+++ D +AAA+ L+
Sbjct: 392 KNHLSNYRQMAEELLKDGDAVDFVAAAIKSLT 423
>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
Length = 637
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 155/280 (55%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P RQ LFSATMP +K+++ K+L NP+NI + + E
Sbjct: 161 MLKMGFIDDIEWILEHTPESRQLALFSATMPEQIKRVANKHLRNPVNISIAASH--TTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + A+ LHG
Sbjct: 219 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCMELAEKLEARGYAASPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ + GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAVDQLKSGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQV L
Sbjct: 338 RAGRTGMAILFVTSREMRMLRTIERATNSRISPMKIPSPESVAERRLSRLGEQVADILAN 397
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
H ++F +L + E T+ LAAAL RP
Sbjct: 398 EH---LDFMKGAVAQLCQQLEVDTEQLAAALLHQVQLERP 434
>gi|423398827|ref|ZP_17376028.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|423409729|ref|ZP_17386878.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
gi|401646011|gb|EJS63645.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|401652844|gb|EJS70396.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
Length = 531
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIES 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 405
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 135/215 (62%), Gaps = 3/215 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I+ LP RQ +LFSATMP + +L+ ++L+ V DE E
Sbjct: 161 MLEMGFIDDIEEIMSYLPEDRQILLFSATMPKEILELAEEFLNENYETIKV-KPDEVTVE 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK K L+++++ + K I+FTQTK +ADE++ L + A+HG
Sbjct: 220 KIKQIIYRVNPRDKFKKLTEVLS-QNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +RE L+ FR GK +LVATDVAARGLDI VDL+I+Y LP D E+++HR GRTG
Sbjct: 279 DFSQKKRETVLHNFRTGKLKILVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214
RAG+EGTAI + TSS+ + ++++++ E ++
Sbjct: 339 RAGREGTAISIMTSSEDKQLQNIQKKTKANIEVIN 373
>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
TB-2]
Length = 460
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 147/255 (57%), Gaps = 12/255 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D++ I + +P RQ++LFSATMP +K L++ L NP I + Q E
Sbjct: 150 MLDMGFLDDIKEIFKFVPSNRQTLLFSATMPEPIKNLAKTILKNPEFITITRKQ--VTNE 207
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK Y ++ L LI Y K+IVF +TK+D D+++ L+ ++ LHG
Sbjct: 208 NIKEYFYVIDEFERKDALIRLID-YKNPTKSIVFCRTKKDVDDIAEFLSGAGFDAKGLHG 266
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q +RE + GF+ + +LVATDVAARGLD+ NV + +Y LP DPE++VHR GRTG
Sbjct: 267 DMDQRKREEVIRGFKSDRIEILVATDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTG 326
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGKEG AI + T + R + +++ K P + DV + ++++ L+ + P
Sbjct: 327 RAGKEGMAISLVTPHEFRALNRIQK--ISKIILKEIPTLADVKDKEIQKIIDKLSNIDP- 383
Query: 240 SVEFFTPTAQRLIEE 254
TP + +IEE
Sbjct: 384 -----TPKSIEIIEE 393
>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 470
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 158/272 (58%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+N+P RQ++LFSATMP ++K++ ++ +P + + E
Sbjct: 137 MLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIANNFMTDPETVSV--KSKEMTVP 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K +LS L+ V + I+F +TKR DE++ ALT ++E +HG
Sbjct: 195 HIEQYFVKAHEKEKFDVLSRLLDVQSPE-LAIIFGRTKRRVDELARALTLRGYSAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G+ VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGKEG A+ T + +R +E+ + PP + LE + E++V T
Sbjct: 314 RAGKEGMAMTFVTPREMGYLRIVEKTTKKSMTQMKPPTSNEALEGQQRLAMEKLVET--- 370
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
V ++ + A+ L+E+ + + AA +L
Sbjct: 371 VKSNELQNYRGMAKELLEDHDSVEIVAAALRL 402
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 157/266 (59%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I+E P RQ+++FSATMP V+ L++++L P + + A+
Sbjct: 156 MLNMGFIEDIKAIVEQTPSSRQTLMFSATMPKSVQNLAQQFLTQPAEVKIEAKH--LTAD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K IL+ ++ + + K I+F +TK+ DE+ L+ +E +HG
Sbjct: 214 LIDQYFVKCRDSEKFDILTRMLDIESPD-KAIIFARTKKRVDEIGRGLSLRGYDAELIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R + +N F+QG+ +LVATDVAARG+D+ V + +Y++P DPE++VHR GRTG
Sbjct: 273 DVTQQKRTQVMNEFKQGRLELLVATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG EG ++ S+ +R++E + + PP ++ S +Q++ LN +
Sbjct: 333 RAGNEGQSVTFVMESELPYLRTIESLTKNQMTPMRPPTDQEAEASQVQQLIDRLNATIAD 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
+V+ + TA+ L+ ++AL A L
Sbjct: 393 GTVDPYRATAKLLLNHYESNALVAGL 418
>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 607
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 136/218 (62%), Gaps = 6/218 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL-VGNQDEKLA 59
ML +GF +DVE ILE LP +RQ +LFSATMP +++LS++YL++P + + +QD KL
Sbjct: 212 MLRMGFIDDVEWILEQLPKERQVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKL- 270
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LH 118
I+ AI+ + K L ++ G I+F +TK V+ L + A L+
Sbjct: 271 --IRQRAITVPMSHKLEALQRVLDACGGEG-VIIFARTKVITLTVAETLEAAGHQVAVLN 327
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QRERT+ R G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRT
Sbjct: 328 GDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRT 387
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
GRAG+ G A+L T +RR +R+LER G E + P
Sbjct: 388 GRAGRTGEAVLFMTPRERRFIRNLERATGQPIELMEVP 425
>gi|407708172|ref|YP_006831757.1| hypothetical protein MC28_4936 [Bacillus thuringiensis MC28]
gi|407385857|gb|AFU16358.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
MC28]
Length = 507
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
Length = 499
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 142/239 (59%), Gaps = 8/239 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+N+P RQ++LFSATMP ++K++ ++ NP + + E
Sbjct: 156 MLNMGFIDDIESILKNVPEGRQTLLFSATMPGPIRKIAENFMTNPETVKV--KSKEMTVS 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + K IL+ L+ + IVF +TKR DE+S AL+ +E +HG
Sbjct: 214 LIDQYFVKAQEREKFDILARLLDTQSPE-LAIVFGRTKRRVDELSKALSIRGYQAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G+ VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRSSVLRKFKEGRIEVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLN 234
RAGKEG A+ T + +R +E+ + + PP V + LE + E++V +N
Sbjct: 333 RAGKEGMAMTFVTPREMGYLRIVEQTTNKRMTPMRPPSVNEALEGQQRLAKEKLVEAIN 391
>gi|337290483|ref|YP_004629504.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|384515395|ref|YP_005710487.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|397653720|ref|YP_006494403.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
gi|334696596|gb|AEG81393.1| hypothetical protein CULC809_00857 [Corynebacterium ulcerans 809]
gi|334698789|gb|AEG83585.1| hypothetical protein CULC22_00872 [Corynebacterium ulcerans
BR-AD22]
gi|393402676|dbj|BAM27168.1| hypothetical protein CULC0102_0969 [Corynebacterium ulcerans 0102]
Length = 674
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 145/225 (64%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF+ED+E ILE+ P +Q LFSATMP+ +++LS++Y+ +P I + + +
Sbjct: 221 MLSMGFQEDIERILEDTPADKQVALFSATMPNGIRRLSKQYMKDPREIQV--KSETRTNT 278
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 279 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 337
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GRTG
Sbjct: 338 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTG 397
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +RS+ER + + P V++V ES
Sbjct: 398 RAGRSGEAILFVTPRERRMLRSIERATNAELIEMDLPTVDEVNES 442
>gi|423480372|ref|ZP_17457062.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
gi|401148764|gb|EJQ56249.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-2]
Length = 534
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
bacterium]
Length = 614
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 164/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D++ ++E +P +RQ LFSATMP+ +K+++ K+L+NP + + +
Sbjct: 167 MLKMGFIDDIKWVMERIPEQRQIALFSATMPNIIKRVAEKFLNNPKIVKVKTKTETAPTI 226
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
G K Y + + K L+ ++ V + I+F +TK E+S L++ ++EA++G
Sbjct: 227 GQK-YCLVGGLSQKLDALTRILEV-TEFDAMIIFARTKTLTIELSEKLSARGFSAEAING 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRE+ +N F++G +LVATDVAARGLD+P + +++Y++P D ET+VHR GRTG
Sbjct: 285 DIQQSQREKIINKFKKGGIDILVATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP----VVEDVLESSAEQVVATLNG 235
RAG+EG AIL + +RR + ++ER K E + P + E +++ +++ T+N
Sbjct: 345 RAGREGEAILFVSHRERRMLNNIERVTRQKIEPLELPTAKIINEKRIDTFKKRITETINN 404
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273
E Q EE +AAALA ++ + P
Sbjct: 405 QDLSVFEKLVTEFQEANEEIAHLKVAAALAHIAQGNEP 442
>gi|423421599|ref|ZP_17398688.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
gi|401097261|gb|EJQ05289.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
Length = 532
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|423393316|ref|ZP_17370542.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
gi|401630235|gb|EJS48042.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1X1-3]
Length = 530
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
Length = 528
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|423381728|ref|ZP_17359011.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|423444415|ref|ZP_17421320.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|423450244|ref|ZP_17427122.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|423467853|ref|ZP_17444621.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|423537254|ref|ZP_17513672.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
gi|423542981|ref|ZP_17519369.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|423543712|ref|ZP_17520070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|423620164|ref|ZP_17595995.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|423626833|ref|ZP_17602608.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
gi|401126252|gb|EJQ33996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5O-1]
gi|401167096|gb|EJQ74390.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB4-10]
gi|401186994|gb|EJQ94070.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB5-5]
gi|401248889|gb|EJR55208.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD115]
gi|401250188|gb|EJR56490.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD148]
gi|401628655|gb|EJS46489.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG1O-2]
gi|402411097|gb|EJV43473.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG4X2-1]
gi|402412290|gb|EJV44650.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-1]
gi|402459706|gb|EJV91442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuB2-9]
Length = 529
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
Length = 645
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 138/227 (60%), Gaps = 8/227 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE +LE LP +RQ +LFSATMPS +++LSRKYL NP + + +K AE
Sbjct: 240 MLRMGFIDDVEWVLEQLPQQRQVVLFSATMPSEIRRLSRKYLQNPAEVTI----QQKGAE 295
Query: 61 G--IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-L 117
I+ + K L+ ++ + G I+F +TK VS AL A L
Sbjct: 296 NSTIRQRHLVVHGAQKLEALTRVLEAESSEG-VIIFARTKAITLTVSEALEQQGYDVAVL 354
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
+GD+ Q+QRERT+ R G+ VLVATDVAARGLD+ + L+I+Y++P D E +VHR GR
Sbjct: 355 NGDVPQNQRERTVERLRSGQVNVLVATDVAARGLDVDRITLVINYDIPFDSEAYVHRIGR 414
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
TGRAG++G AIL T +RR + LER VG + P D+ +S
Sbjct: 415 TGRAGRQGDAILFLTPRERRFLGGLERAVGKAITPMEVPTNADINQS 461
>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
BAA-613]
Length = 569
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 159/272 (58%), Gaps = 7/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + +++RK+ +P+ + ++ + E
Sbjct: 159 MLNMGFLEDMETILSQLPEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++S L+ +YA +IVF TKR D++ L +E LHG
Sbjct: 217 KVTQYYYEVKPKNKVEVMSRLLDMYAPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++ FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQVQRDRVMDSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A + + +R ++R K + P + D+ E E+++ + V +
Sbjct: 336 RAGREGKAFSLVMGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLND 395
Query: 240 S--VEFFTPTAQRLIEEKGTDA-LAAALAQLS 268
+ + ++L+EE T LAAAL ++S
Sbjct: 396 TDLTKMVNIIEKKLMEEDYTSMDLAAALLKMS 427
>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
Length = 537
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 159/276 (57%), Gaps = 17/276 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+ + RQ++LFSATMP ++KLSRKY+++P + + N+ E A
Sbjct: 155 MLDMGFVDDIEAILKEVNQVRQTLLFSATMPPAIRKLSRKYMNDPKTVTI--NKGEVTAP 212
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R I SD + + I+F +TK+ E++ AL +
Sbjct: 213 SINQVYYKVLERNKIDSLCRIIDSDDVEL------GILFCRTKKGVAELTEALQARGYLV 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD++Q QR+ + FR L+ATDVAARG+D+ NV +I+Y++P DPE++VHR
Sbjct: 267 DGLHGDLTQSQRDVVMKKFRDSSIEFLIATDVAARGIDVENVTHVINYDIPQDPESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE---SSAEQVVA 231
GRTGRAG+ G AI + T + + +RS+E+++ S P +E+V+E SS + ++
Sbjct: 327 IGRTGRAGRTGAAITLVTPREMKHLRSIEKEIKMHIPSASVPTIEEVVEKQQSSWKNLIQ 386
Query: 232 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
+ +E F P ++ E+ + AAL +L
Sbjct: 387 DTIEQGGKEMELFLPLVDEILAEQDPKQVVAALLKL 422
>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 594
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 150/256 (58%), Gaps = 5/256 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P Q LFSATMP+ ++KL++ +L +PLNI + EK
Sbjct: 163 MLNMGFIEDIETILKAVPNTAQRALFSATMPNAIRKLAKTFLKDPLNIQIEAIAREKAT- 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
IK A +K T L+ L+ V + ++F +T++D +V+ L + + L G
Sbjct: 222 -IKQKAWKVQGMTKMTALTRLLEVTPYQ-RALIFVRTRQDTMDVAELLQRNGFKAAPLSG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRE+T++ R G +LV TDV ARGLD+P + +I+Y+LP+D E++VHR GRTG
Sbjct: 280 DLNQAQREQTVSQLRSGHIEILVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G AIL F + +R +R ER EF P ++ + +Q++ L + P
Sbjct: 340 RAGRTGEAILFFRAKERHLLRHYERLTNAPVEFFEVPNANELSKYRQQQLLEKLQASLAP 399
Query: 239 ESVEFFTPTAQRLIEE 254
E+ P ++L+ E
Sbjct: 400 ETASADKPKLEKLLGE 415
>gi|229101040|ref|ZP_04231822.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
gi|228682378|gb|EEL36473.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-28]
Length = 374
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 1 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 58
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 59 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 117
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 118 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 177
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 178 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 237
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 238 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 273
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 151/274 (55%), Gaps = 8/274 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL +P +RQ+MLFSATMP + +L+R Y NP I ++ + E
Sbjct: 159 MLDMGFREDIETILNGVPEERQTMLFSATMPKPIMELARAYQQNPEIIKVI--RKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y +K +LS L+ +Y ++VF TK+ DE+ L +E LHG
Sbjct: 217 NITQYYYEVRPKNKSEVLSRLLDIYDPK-LSVVFCNTKKGVDELVADLKGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R+R ++ FR GK +LVATDVAARG+D+ +VD + +Y+LP D E +VHR GRTG
Sbjct: 276 DMKQTMRDRVMHRFRSGKTDILVATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G A + ++ + R K + P + DV E+ E++ ++ +
Sbjct: 336 RAGRTGMAFSFVVGREVYKLKDIRRYCKAKIKAQPIPSLNDVTETRVEKIFDRIDHYIED 395
Query: 239 ESVEFFTPTAQRLIEEK---GTDALAAALAQLSG 269
+++ + + + EK D AA LA++ G
Sbjct: 396 QNLNKYIDMVEEFVNEKDYTAMDVAAAFLAEILG 429
>gi|398307568|ref|ZP_10511154.1| ATP-dependent RNA helicase; cold shock [Bacillus vallismortis
DV1-F-3]
Length = 494
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 157/270 (58%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIEDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
++ F+ A L+E+ + AA ++S
Sbjct: 394 NNLNFYMTAAAELLEDHDAVTVVAAAIKMS 423
>gi|357055243|ref|ZP_09116317.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
gi|355383199|gb|EHG30285.1| hypothetical protein HMPREF9467_03289 [Clostridium clostridioforme
2_1_49FAA]
Length = 569
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 159/272 (58%), Gaps = 7/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + +++RK+ +P+ + ++ + E
Sbjct: 159 MLNMGFLEDMETILSQLPEERQTLMFSATMPQAIAEIARKFQKDPVTVRVI--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++S L+ +YA +IVF TKR D++ L +E LHG
Sbjct: 217 KVTQYYYEVKPKNKVEVMSRLLDMYAPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++ FR G+ +LVATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQVQRDRVMDSFRNGRTDILVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A + + +R ++R K + P + D+ E E+++ + V +
Sbjct: 336 RAGREGKAFSLVMGKEVYKLRDIQRYCKTKIIPQAIPSLNDITEIKVEKILDQVQEVLND 395
Query: 240 S--VEFFTPTAQRLIEEKGTDA-LAAALAQLS 268
+ + ++L+EE T LAAAL ++S
Sbjct: 396 TDLTKMVNIIEKKLMEEDYTSMDLAAALLKMS 427
>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
Length = 553
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 111/316 (35%), Positives = 178/316 (56%), Gaps = 31/316 (9%)
Query: 1 MLAVGFEEDVELILEN-------------LPPKRQSMLFSATMPSWVKKLSRKYLD-NPL 46
ML +GF EDVE +++ +P + Q +LFSAT+PSWV+++ KY+ + +
Sbjct: 174 MLDMGFSEDVEKVVDYAIKSGGETKGPRIVPDRIQVLLFSATIPSWVREVMTKYMHPDKV 233
Query: 47 NIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVS 105
+DLV + EK + ++ + ++ +++DLI VY G+ IVF K+ +E++
Sbjct: 234 TVDLV-TEKEKASVDVRHLVLRCPWEARAKVIADLIEVYCGVDGRAIVFCDMKKSCNELA 292
Query: 106 --LALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 163
L SI + LHGDI Q RE+TL F+ GKF LVATDVAARGLDI + L+I+ E
Sbjct: 293 GEECLRSI--AGVLHGDIPQKTREQTLKDFKDGKFRCLVATDVAARGLDIQGITLVINRE 350
Query: 164 LP------NDPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVGCKFEFVSPP 216
P D ET++HRSGRTGRAG++G I + T +Q ++S+E+ VG F + P
Sbjct: 351 PPATRSGVADVETYIHRSGRTGRAGRKGVCITLSTGFAQEAVLQSIEKAVGNAFTRIGAP 410
Query: 217 VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTD---ALAAALAQLSGFSRP 273
D+L++ AE++V + + + + A+ ++ K +D A+A L G
Sbjct: 411 QPSDLLKARAERLVERIGDLDEQLITKMDSLAEEVL-AKTSDPRAAVARCLCLAVGAFGK 469
Query: 274 PSSRSLINHEQGWVTL 289
+RS++ +G+VT+
Sbjct: 470 MKTRSILTSNEGFVTV 485
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 13/261 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL ++P +RQ++ FSATMP + L+RKY +NP + ++ + E E
Sbjct: 160 MLDMGFRDDIETILSSMPEERQTVFFSATMPKPILDLTRKYQNNPEIVKVL--RKELTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I A S R L + + ++VF TKR DEV+ +L S I +EALHG
Sbjct: 218 NIS-QAYYEVRPSLRIELMVRLMELNQFKLSVVFCNTKRSTDEVTESLISKGIMAEALHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR + +N FR+G +VLVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 277 DLSQAQRTKVMNKFRKGTCSVLVATDVAARGIDVDDVEAVFNYDLPLDEENYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRT--VRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATL 233
RAGK G A L F + ++ T +R LE+ + + PP V D++E S + V A++
Sbjct: 337 RAGKSGMA-LSFVTGRKDTYRLRDLEKFIKTTIHKMDPPSVTDLVELKKASLVKDVNASI 395
Query: 234 NGVHPESVEFFTPTAQRLIEE 254
N V E + F T ++ E
Sbjct: 396 NKV--EDNQLFEETIGMMLAE 414
>gi|423405051|ref|ZP_17382224.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|423479888|ref|ZP_17456602.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
gi|401645694|gb|EJS63344.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-2]
gi|402424280|gb|EJV56466.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6X1-1]
Length = 527
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPDTHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
Length = 530
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPDTHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|429729511|ref|ZP_19264170.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
gi|429149535|gb|EKX92513.1| cold-shock DEAD-box protein A [Corynebacterium durum F0235]
Length = 677
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 146/229 (63%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMPS ++++S++YL +P I + + +
Sbjct: 224 MLNMGFQEDVERILEDTPDDKQVALFSATMPSAIRRMSKQYLKDPREITV--KSETRTNT 281
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +E++ L + ++ A++G
Sbjct: 282 NITQKFLNVAHRNKLDALTRILEV-TEFAAMIMFVRTKHETEELAEKLRARGFSAAAING 340
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 341 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 400
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR +RS+ER + P V++V ES E+
Sbjct: 401 RAGRSGEAILFVTPRERRMLRSIERATNATLVEMELPTVDEVNESRKEK 449
>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
Length = 609
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 146/243 (60%), Gaps = 22/243 (9%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE PPKRQ LFSATMP ++++++++L+ P I
Sbjct: 163 MLRMGFIDDVEWILEQTPPKRQIALFSATMPDAIRRIAKQHLNKPEEIT----------- 211
Query: 61 GIKLYAISTTATSKRTILS------DLITVYAKGGKT---IVFTQTKRDADEVSLALTSI 111
IKL ++ + +R + D +T + T I+F +T+ E++ L++
Sbjct: 212 -IKLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTDGVIIFVRTRIATQELADKLSAR 270
Query: 112 -IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
A+ AL+GDI+Q+QRE+T+ ++G +L+ATDVAARGLD+ + +I+Y++PNDPE
Sbjct: 271 GYATAALNGDIAQNQREKTVENLKKGGLDILIATDVAARGLDVERISHVINYDIPNDPEA 330
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
+VHR GRTGRAG+ G AIL + +RR +R++ER G K E + P E V + A +
Sbjct: 331 YVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVTGQKIESMELPTSEQVSDKRASRFK 390
Query: 231 ATL 233
A +
Sbjct: 391 ARI 393
>gi|423462498|ref|ZP_17439292.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
gi|401131792|gb|EJQ39442.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X2-1]
Length = 528
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPDTHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 153/264 (57%), Gaps = 24/264 (9%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLA 59
ML +GF +DVE ILE LP +RQ +LFSATMPS +++LS+KYL++P I + + E+L
Sbjct: 191 MLRMGFIDDVEWILEQLPEERQLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERL- 249
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---- 115
I+ IS K L ++ ++ G I+F +TK A+T ++A +
Sbjct: 250 --IRQRYISVQNVYKVNALQRVLEAVSEEG-VIIFARTK--------AITIVVAEKLESY 298
Query: 116 -----ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
L+GDI Q+QRERT+ RQG +LVATDVAARGLD+ + L+I+Y++P D E
Sbjct: 299 GYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREA 358
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
+VHR GRTGRAG+ G AIL +R + +LER VG E + P + + + +++
Sbjct: 359 YVHRIGRTGRAGRNGEAILFVNPRERSFLSNLERAVGQPIEKMDIPDNDLINNNRIKKLQ 418
Query: 231 ATLNGVHPESVEFFTPTAQRLIEE 254
A L + S E P ++EE
Sbjct: 419 AKL--IKAASTERDNPEEANILEE 440
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/264 (39%), Positives = 153/264 (57%), Gaps = 24/264 (9%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLA 59
ML +GF +DVE ILE LP +RQ +LFSATMPS +++LS+KYL++P I + + E+L
Sbjct: 191 MLRMGFIDDVEWILEQLPEERQLVLFSATMPSEIRRLSKKYLNSPAEITIKATELKERL- 249
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE---- 115
I+ IS K L ++ ++ G I+F +TK A+T ++A +
Sbjct: 250 --IRQRYISVQNVYKVNALQRVLEAVSEEG-VIIFARTK--------AITIVVAEKLESY 298
Query: 116 -----ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
L+GDI Q+QRERT+ RQG +LVATDVAARGLD+ + L+I+Y++P D E
Sbjct: 299 GYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREA 358
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
+VHR GRTGRAG+ G AIL +R + +LER VG E + P + + + +++
Sbjct: 359 YVHRIGRTGRAGRNGEAILFVNPRERSFLSNLERAVGQPIEKMDIPDNDLINNNRIKKLQ 418
Query: 231 ATLNGVHPESVEFFTPTAQRLIEE 254
A L + S E P ++EE
Sbjct: 419 AKL--IKAASTERDNPEEANILEE 440
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 158/271 (58%), Gaps = 14/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+E IL+N+P RQ++LFSAT+P + KL+R+YL +P+++++ E+L
Sbjct: 160 MLDMGFIEDIEFILKNVPENRQTLLFSATVPDPIAKLARRYLKDPVHVNI---SPERLTV 216
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ K L+ ++ + + +TI+F +TK+ DE++ L + +EALH
Sbjct: 217 PSIEQVFYEVREFEKLDALTRILDM-EEAERTIIFCRTKKRVDELTEGLQARGYTAEALH 275
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QR R + F++G +LVATDVAARGLDI NV +I+Y+LP D E++VHR GRT
Sbjct: 276 GDLNQVQRNRVMKRFKEGGSEILVATDVAARGLDIDNVTHVINYDLPQDTESYVHRIGRT 335
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL----- 233
GRAG+ GTAI + + R +R +ER + + + P DV E E + L
Sbjct: 336 GRAGRTGTAISLINPKEFRQLRQMERVLRVRLQRRPLPTPADVAEKQREMLKNRLAEEIQ 395
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
GV P E A+ E D AAA+
Sbjct: 396 RGVLPSYQELVMQLAE---EYDSVDIAAAAI 423
>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 611
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 155/280 (55%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E +LE+ P Q LFSATMP +K+++ K+L NP+NI + + E
Sbjct: 161 MLKMGFIDDIEWVLEHKPKDSQLALFSATMPEQIKRVAAKHLTNPVNISIAAST--TTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 SIDQRFVQVSQHNKLEALVRVLEVENTEG-VIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E E + TLNG
Sbjct: 338 RAGRTGMAILFVTSREMRMLRTIERATNSRIAPMKVPSPESVAERRLSRLGELIQETLNG 397
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F L + E TD LAAAL Q RP
Sbjct: 398 ----DLDFMKSAVAELCQQLEVDTDLLAAALLQQVQAERP 433
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 167/281 (59%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL +P + Q++LFSATMP+ +++++ K++ NP + + E
Sbjct: 156 MLNMGFIDDIEAILAQIPEEHQTLLFSATMPAPIQRMAEKFMKNPQIVRV--QSKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + +K +L+ L+ + + IVF +TKR DE+S AL +E +HG
Sbjct: 214 QIEQFYLEVQEKNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYMAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLNG 235
RAGK G A+ T ++ ++ +E+ + + + + PP +++ LE ++ E+++ T
Sbjct: 333 RAGKTGMAMTFVTPREKAYLKIVEKTIKRRMDKMKPPTLDEALEGQQKATIEKIIQT--- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+ +++ + A+ L+E++ DA+ A L ++ P +
Sbjct: 390 IESNNLQLYKQAAEDLLEQQ--DAVMVVSAALKMMTKEPDT 428
>gi|344343809|ref|ZP_08774676.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
gi|343804793|gb|EGV22692.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
Length = 625
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 160/276 (57%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I + P +RQ LFSATMP +++++ K L +P+ + + D + +
Sbjct: 163 MLNMGFAEDIDWIFDQAPEERQVALFSATMPRAIRQVAEKRLRDPMLVQVAA--DSETVD 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T K +L+ ++ + G +VF +TK E++ L + A+EAL+G
Sbjct: 221 TIDQHHCVVTRFHKLDVLTRILEIEEFDG-MVVFVRTKHGTTELADKLKAHGFAAEALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RERT++ +QG+ +LVATDVAARGLD+ + ++++++P DP +VHR GRTG
Sbjct: 280 DMNQEMRERTIDRLKQGQLDILVATDVAARGLDVERISHVVNFDIPTDPSAYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+L+ +R +R++ER + + PP D+ ES ++ A + +
Sbjct: 340 RAGRAGRALLLVEPRERGLLRAIERTIRRSVPAMEPPSAADLSESRIDRFTAEIKEALGQ 399
Query: 240 SVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
++FF RL E + LAAALA L+ RP
Sbjct: 400 DLDFFYRLLSRLNTELEVEMHDLAAALAYLNQRERP 435
>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-23m63]
gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
Length = 537
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 137/226 (60%), Gaps = 4/226 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E+IL +P +RQ+ FSATMP + +L+++Y +P +I +V + E
Sbjct: 159 MLDMGFREDIEMILSKIPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV--RKELTVS 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K Y I T +++K +L L+ VY ++VF TKR ADE+ L + ++ALHG
Sbjct: 217 NTKQYYIETRSSNKLEVLCRLVDVYDPK-LSVVFCNTKRKADELVGDLQARGYFADALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 276 DLKQTQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
RAG+EG + + R ++ +ER K + P + DV E
Sbjct: 336 RAGREGMSFTFVFGKEMRKMKDIERYTKSKLIKHNIPTITDVEEKK 381
>gi|126698341|ref|YP_001087238.1| ATP-dependent RNA helicase [Clostridium difficile 630]
gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-66c26]
gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
107932]
gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-63q42]
gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
43255]
gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-76w55]
gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-97b34]
gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-37x79]
gi|260682458|ref|YP_003213743.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260686057|ref|YP_003217190.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
QCD-32g58]
gi|384360039|ref|YP_006197891.1| putative ATP-dependent RNA helicase [Clostridium difficile BI1]
gi|423082109|ref|ZP_17070704.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|423085713|ref|ZP_17074155.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|423090412|ref|ZP_17078711.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
gi|357549359|gb|EHJ31206.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 002-P50-2011]
gi|357549630|gb|EHJ31476.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 050-P50-2011]
gi|357556521|gb|EHJ38116.1| putative DEAD-box ATP-dependent RNA helicase CshA [Clostridium
difficile 70-100-2010]
Length = 537
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 137/226 (60%), Gaps = 4/226 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E+IL +P +RQ+ FSATMP + +L+++Y +P +I +V + E
Sbjct: 159 MLDMGFREDIEMILSKIPEERQTTFFSATMPRGILELTKRYQKDPEHIKVV--RKELTVS 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K Y I T +++K +L L+ VY ++VF TKR ADE+ L + ++ALHG
Sbjct: 217 NTKQYYIETRSSNKLEVLCRLVDVYDPK-LSVVFCNTKRKADELVGDLQARGYFADALHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ ++ FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 276 DLKQTQRDIVMDKFRNGTIDILVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
RAG+EG + + R ++ +ER K + P + DV E
Sbjct: 336 RAGREGMSFTFVFGKEMRKMKDIERYTKSKLIKHNIPTITDVEEKK 381
>gi|33863354|ref|NP_894914.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9313]
gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9313]
Length = 635
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 163/306 (53%), Gaps = 12/306 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE LP +RQ +LFSATMPS +++LS++YL P I + E A
Sbjct: 238 MLRMGFIDDVEWILEQLPEERQMVLFSATMPSEIRRLSKRYLHEPAEITIKSRDQE--AR 295
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ + K L ++ + G I+F +TK V+ AL + A L+G
Sbjct: 296 LIRQRCITLQNSHKLEALRRVLEAFTGEG-VIIFARTKVITLTVAEALEAAGHDVAVLNG 354
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 355 DVPQNQRERTVERLRKGSVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTG 414
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ G AIL +RR V ER VG E + P + +S +++ L
Sbjct: 415 RAGRSGEAILFVNPRERRFVGGFERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKT 474
Query: 237 ---HPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293
+ E QR+++E ALA L F+ P L+ ++GW+ R
Sbjct: 475 ERDNSEETALLQELIQRVVQELSLSPEQLALAALE-FAVGPGP-ILVQADEGWLQQSTQR 532
Query: 294 DSAFSR 299
+ R
Sbjct: 533 NRRNDR 538
>gi|427440715|ref|ZP_18924987.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
gi|425787422|dbj|GAC45775.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
Length = 511
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 155/268 (57%), Gaps = 9/268 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E P +RQ++LFSATMP+ +KK+ K++ +P + + E A+
Sbjct: 155 MLDMGFLPDIEKIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQVTV--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y I + K +L+ +I V + +VF +TKR DEV+ L + + A +HG
Sbjct: 213 LVDQYYIRSKEFEKFDMLTRIIDVQSPK-LAVVFGRTKRRVDEVAKGLVARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L+ FR G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMNILHQFRDGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGV 236
RAG GT++ T+ + +R +ER + + PP E+ + AEQ V L V
Sbjct: 332 RAGAHGTSVTFVTNWEMDYLRDVERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQEL--V 389
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAAL 264
V+ F A RL+E+ L AAL
Sbjct: 390 KKTDVDKFGEQADRLLEQYDARTLVAAL 417
>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain-containing protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 405
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 134/215 (62%), Gaps = 3/215 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I+ LP RQ++LFSATMP + L+ ++L+ V DE E
Sbjct: 161 MLEMGFIDDIEEIMSYLPEDRQNLLFSATMPKEILDLAEEFLNENYETIRV-KPDEVTVE 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK K L+++++ + K I+FTQTK +ADE++ L + A+HG
Sbjct: 220 KIKQIIYRVNPRDKFKKLTEVLS-QNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +RE L+ FR GK +LVATDVAARGLDI VDL+I+Y LP D E+++HR GRTG
Sbjct: 279 DFSQKKRETVLHNFRTGKLKILVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214
RAG+EGTAI + T S+ + ++++++ E ++
Sbjct: 339 RAGREGTAISIMTPSEDKQLQNIQKKTKANIEVIN 373
>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9303]
Length = 636
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 161/296 (54%), Gaps = 16/296 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE LP +RQ +LFSATMPS +++LS++YL P I + E A
Sbjct: 238 MLRMGFIDDVEWILEQLPKERQMVLFSATMPSEIRRLSKRYLHEPAEITIKSRDQE--AR 295
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ + K L ++ + G I+F +TK V+ AL S A L+G
Sbjct: 296 LIRQRCITLQNSHKLEALRRVLEAFTGEG-VIIFARTKVITLTVAEALESAGHDVAVLNG 354
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 355 DVPQNQRERTVERLRKGSVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTG 414
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ G AIL +RR V ER VG E + P + +S +++ L
Sbjct: 415 RAGRSGEAILFVNPRERRFVGGFERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKT 474
Query: 237 ---HPESVEFFTPTAQRLIEE--KGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287
+ E QR++EE + LA A +L+ P L+ ++GW+
Sbjct: 475 ERDNSEETALLQELIQRVVEELSLSPEQLAVAALELAVGPGP----ILVQADEGWL 526
>gi|423515083|ref|ZP_17491564.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
gi|401168046|gb|EJQ75314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
Length = 540
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|423370478|ref|ZP_17347885.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
gi|401073949|gb|EJP82358.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
Length = 542
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|423514499|ref|ZP_17491006.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|402442074|gb|EJV74016.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
Length = 538
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|387907207|ref|YP_006337543.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582100|gb|AFJ90878.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
Length = 547
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 140/228 (61%), Gaps = 11/228 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+++++ I+E LP K+QS+LFSATM ++ +++KYL +P+ I +VG ++ +
Sbjct: 159 MLNMGFKDELDYIIEKLPKKKQSLLFSATMSRYMNAIAKKYLIDPVEI-VVGKKNIGSDD 217
Query: 61 GIKLYAISTTATSKRTILSDLITV----YAKGGKTIVFTQTKRDADEVS-LALTSIIASE 115
+Y I + K L ++ + Y I+F TK++ E++ + ++
Sbjct: 218 VKHVYYIIENFSKKYLALKRIVDINPDIYG-----IIFCSTKKETKEIAEFLIKDSYNAD 272
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
ALHGD+SQ QRE +N FR +LVATDVAARGLD+ N+ +I+Y +PN+ ET+VHRS
Sbjct: 273 ALHGDLSQTQRESVMNKFRNRNLQLLVATDVAARGLDVNNITHVINYSIPNESETYVHRS 332
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
GRTGRAG G ++ + + + R +R E+ G F+ + P E++ E
Sbjct: 333 GRTGRAGNIGISVCIIQTKEIRNLREFEKRTGKNFDRIMLPTGEEICE 380
>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|418069818|ref|ZP_12707095.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|357536349|gb|EHJ20380.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 511
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 155/268 (57%), Gaps = 9/268 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E P +RQ++LFSATMP+ +KK+ K++ +P + + E A+
Sbjct: 155 MLDMGFLPDIEKIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQVTV--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y I + K +L+ +I V + +VF +TKR DEV+ L + + A +HG
Sbjct: 213 LVDQYYIRSKEFEKFDMLTRIIDVQSPK-LAVVFGRTKRRVDEVAKGLVARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L+ FR G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMNILHQFRDGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGV 236
RAG GT++ T+ + +R +ER + + PP E+ + AEQ V L V
Sbjct: 332 RAGAHGTSVTFVTNWEMDYLRDVERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQEL--V 389
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAAL 264
V+ F A RL+E+ L AAL
Sbjct: 390 KKTDVDKFGEQADRLLEQYDARTLVAAL 417
>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|423485535|ref|ZP_17462217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
gi|423491260|ref|ZP_17467904.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|423501944|ref|ZP_17478561.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|423596874|ref|ZP_17572899.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|423602239|ref|ZP_17578239.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|423665253|ref|ZP_17640392.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|423671681|ref|ZP_17646685.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|423672515|ref|ZP_17647454.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|401151508|gb|EJQ58957.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|401161714|gb|EJQ69077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|401218539|gb|EJR25216.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|401226140|gb|EJR32681.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|401290577|gb|EJR96269.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|401291502|gb|EJR97173.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|401311621|gb|EJS16907.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|402441494|gb|EJV73449.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
Length = 538
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIEN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487867|ref|YP_006711973.1| DEAD/DEAH box helicase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423680898|ref|ZP_17655737.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
gi|81691189|sp|Q65N62.1|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346868|gb|AAU39502.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383442004|gb|EID49713.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis WX-02]
Length = 487
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 157 MLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 215 NIQQFYLEVHERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+QG VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T ++ +R++E+ K + + P +++ +E + V + + E
Sbjct: 334 RAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEE 393
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 394 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDN 429
>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 500
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 140/215 (65%), Gaps = 7/215 (3%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF DVE I+ ++P + RQ+MLFSATMP+ ++KL +Y++ P ++++ EK+
Sbjct: 158 MLHMGFLPDVETIVSSMPRQHRQTMLFSATMPAQIRKLGAEYMNGPTDVNIT---PEKVT 214
Query: 60 -EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ I+ AI TT K L +LI Y + +VF +TK A +++ AL I+S+ L
Sbjct: 215 VDKIRQVAIETTDRRKEDTLVELIGKY-QPYLAVVFCRTKVRAKKLNEALQERGISSDEL 273
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ +RE+ + FRQ + VL+ATDVAARGLD+ V + +Y++P DPET+VHR GR
Sbjct: 274 HGDLSQAKREQVMKRFRQARLQVLIATDVAARGLDVEGVSHVFNYDVPQDPETYVHRIGR 333
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212
TGRAG EG A+ + +S V ++++ +G K E
Sbjct: 334 TGRAGNEGMAVTLVSSHDIGAVANIQKTLGVKIEL 368
>gi|451348181|ref|YP_007446812.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
gi|449851939|gb|AGF28931.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens IT-45]
Length = 494
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKNMLRAIEQTTKRKMDCMKEPTLDEALEGQQQVTVDRLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 429
>gi|449135622|ref|ZP_21771069.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
gi|448885676|gb|EMB16100.1| cold-shock deAd-box protein a [Rhodopirellula europaea 6C]
Length = 851
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV+ +LE P RQ LFSAT+P ++K++ +YL++P I + A
Sbjct: 380 MLNMGFLEDVQFVLEKTPEGRQVALFSATLPKPIRKIADEYLNDPARITI--KSKTITAA 437
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL+G
Sbjct: 438 SVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNG 496
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GRTG
Sbjct: 497 DMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTG 556
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 557 RAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSAD 616
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRP 273
+ + + + EE G + +AAALA++S RP
Sbjct: 617 QDLTIYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 653
>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
Length = 519
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 137 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK--EVTMP 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + I+F +TKR DE+S AL A+E +HG
Sbjct: 195 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIIFGRTKRRVDELSEALNLRGYAAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++ER K + + P +++ LE + L +
Sbjct: 314 RAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDEALEGQQRLIAEKLQSTIEN 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 374 DNLSYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 409
>gi|421732891|ref|ZP_16172007.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073252|gb|EKE46249.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 494
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKNMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 429
>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
Length = 516
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 161/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 137 MLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 195 NIQQFYLEVHERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYTAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+QG VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T ++ +R++E+ K + + P +++ +E + V + + E
Sbjct: 314 RAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEE 373
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 374 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDN 409
>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
DSM 12442]
Length = 528
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++E+ K + ++ P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIES 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
Rock3-17]
Length = 536
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P Q++LFSATMP +++++ +++ P +I + E
Sbjct: 156 MLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +L+ L+ + + IVF +TKR DE+S AL A+E +HG
Sbjct: 214 NIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK+G A+L T + ++++E+ K + ++ P +++ LE + L +
Sbjct: 333 RAGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMNAPTLDEALEGQQRLIAEKLQSTIES 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+++ ++ A+ ++EE D++ A L ++ P +
Sbjct: 393 DNLAYYKRIAEEMLEE--NDSVTVVAAALKMMTKEPDT 428
>gi|387896965|ref|YP_006327261.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
gi|387171075|gb|AFJ60536.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens Y2]
Length = 517
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 180 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 237
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 238 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 296
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 297 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 356
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 357 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 416
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 417 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 452
>gi|375361121|ref|YP_005129160.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371567115|emb|CCF03965.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 511
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 174 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 232 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELTEALNLRGYAAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 351 RAGKTGMAMTFITPREKNMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 410
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 411 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 446
>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 625
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 155/276 (56%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P RQ LFSATMP +K+++ KYLDNP+++ + E
Sbjct: 161 MLKMGFIDDIEWILEHTPKTRQLALFSATMPEQIKRVANKYLDNPVHVKIAATT--STVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 TIEQRFVQVSQHNKLEALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++G+ +++ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAIDQLKRGQLDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T + R +R++ER + + P E V E ++ + + +
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATNSRIAPMDVPSPETVTERRLSRLGEQVAEIISQ 397
Query: 240 SVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+EF L + E TD LAAAL + RP
Sbjct: 398 DLEFMKGAVATLCQQLEVDTDILAAALLKQVQKDRP 433
>gi|440713990|ref|ZP_20894578.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
gi|436441186|gb|ELP34452.1| cold-shock DEAD box protein A [Rhodopirellula baltica SWK14]
Length = 895
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV+ +LE P RQ LFSAT+P ++K++ +YL++P I + A
Sbjct: 423 MLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKIADEYLNDPARITI--KSKTITAA 480
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL+G
Sbjct: 481 SVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNG 539
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GRTG
Sbjct: 540 DMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTG 599
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 600 RAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSAD 659
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRP 273
+ + + + EE G + +AAALA++S RP
Sbjct: 660 QDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 696
>gi|452910044|ref|ZP_21958727.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
gi|452835004|gb|EME37802.1| Cold-shock DEAD-box protein A [Kocuria palustris PEL]
Length = 606
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 157/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL P +Q LFSATMP ++K++++YL NP I + A
Sbjct: 176 MLRMGFAEDVETILSQTPEDKQVALFSATMPPAIRKIAQRYLRNPEEISVKAKT--STAT 233
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K ++ L+ V G IVF +TK +EV+ L + A+ A++G
Sbjct: 234 NIRQRYLQVMGAHKLEAMTRLLEVEEHDG-IIVFVRTKAATEEVAEKLRARGHAATAING 292
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RE+++ R GK +LVATDVAARGLD+ + L+++Y++P+D E++VHR GRTG
Sbjct: 293 DIPQQAREKSVEQLRSGKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTG 352
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL T ++ +R++E+ E + P VEDV + +Q ++ + +
Sbjct: 353 RAGRSGDAILFMTPREKYLLRAIEKTTRQPVEQMPMPSVEDVNRTRVDQFGQSITDTIET 412
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
+ + F +E+ D L AAALA +S +P
Sbjct: 413 QDLSAFREMVTAYVEDHDVDPLEVAAALAVISQGDQP 449
>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 931
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV+ +LE P RQ LFSAT+P ++K++ +YL++P I + A
Sbjct: 459 MLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKIADEYLNDPARITI--KSKTITAA 516
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL+G
Sbjct: 517 SVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNG 575
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GRTG
Sbjct: 576 DMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTG 635
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 636 RAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSAD 695
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRP 273
+ + + + EE G + +AAALA++S RP
Sbjct: 696 QDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 732
>gi|421610904|ref|ZP_16052069.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
gi|408498358|gb|EKK02852.1| cold-shock deAd box protein a [Rhodopirellula baltica SH28]
Length = 931
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV+ +LE P RQ LFSAT+P ++K++ +YL++P I + A
Sbjct: 459 MLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKIADEYLNDPARITI--KSKTITAA 516
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL+G
Sbjct: 517 SVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNG 575
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GRTG
Sbjct: 576 DMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTG 635
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 636 RAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSAD 695
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRP 273
+ + + + EE G + +AAALA++S RP
Sbjct: 696 QDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 732
>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
Length = 503
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 161/277 (58%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P Q++LFSATMP+ +++++ K+++ P + + E
Sbjct: 156 MLNMGFIEDIEKILSNVPENHQTLLFSATMPTPIRRIAEKFMNEPKVVKVK--AKEVTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + K IL+ L+ + + I+F +TKR DE+S AL +++ +HG
Sbjct: 214 NITQYYLEVQEKRKFDILTRLLDMQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T + + ++ER K E ++PP +++ +E L V
Sbjct: 333 RAGKMGAAMTFVTPRETGQLHNIERTTKRKMERLTPPTLDEAMEGQQRIAADKLTESVTQ 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
++ ++ A+ L+EE + +L AA +L F++ P+
Sbjct: 393 GNLSYYKQLAEELLEEHDSVSLVAAAIKL--FTKEPN 427
>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 500
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 165/281 (58%), Gaps = 7/281 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF ED+E IL+ +P +RQ++LFSATMP +K ++ ++++ P++I + Q E
Sbjct: 156 MLSMGFIEDIETILQEVPGERQTLLFSATMPPKLKTIADRFMNKPVSIAVKAKQ--LTVE 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ I+ + K L +L+ + I+F +TKR DE++ +L+ A E LHG
Sbjct: 214 NIEQRYIALSEKEKFDTLCNLLDMETPE-LAIIFGRTKRRVDELTESLSIRGFAVEGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q +R++ + F++G V+VATDVAARGLD+ +V +I+++LP D E++VHR GRTG
Sbjct: 273 DMKQERRDQVIRKFKRGSIDVMVATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK+G + T ++ +R +E K + V P + D + +Q V L V+
Sbjct: 333 RAGKKGISYSFVTHKEKDHLRYIEESTRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNN 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSL 279
+ + T A++L+EE D + A L ++ PS + +
Sbjct: 393 AASKQLTGEAKQLLEE--FDPVVLVSAALQMVTKEPSKKQV 431
>gi|385263594|ref|ZP_10041681.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
gi|385148090|gb|EIF12027.1| DEAD/DEAH box helicase [Bacillus sp. 5B6]
Length = 517
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 180 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 237
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 238 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 296
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 297 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 356
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 357 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 416
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 417 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 452
>gi|386757060|ref|YP_006230276.1| DEAD/DEAH box helicase [Bacillus sp. JS]
gi|384930342|gb|AFI27020.1| DEAD/DEAH box helicase [Bacillus sp. JS]
Length = 511
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 157/270 (58%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 174 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 232 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 351 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTAISE 410
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
++ F+ A L+E+ + AA ++S
Sbjct: 411 NNLNFYMTAAAELLEDHDAVTVVAAAIKMS 440
>gi|451943907|ref|YP_007464543.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903294|gb|AGF72181.1| hypothetical protein A605_05875 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 697
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 145/225 (64%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P ++Q LFSATMP+ ++++S++YL++P I + + +
Sbjct: 238 MLNMGFQEDVERILADTPDEKQVALFSATMPNGIRRISKQYLNDPREITV--KSETRTNT 295
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + +K ++ ++ V + IVF +TK + +E++ L + ++ A++G
Sbjct: 296 NITQRYLHVAHRNKLDAITRILEV-TEFDAMIVFVRTKHETEEIAEKLRARGFSAAAING 354
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRERT++ + G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 355 DIAQNQRERTVDQLKNGRLDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 414
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR + S+ER + + P VEDV E+
Sbjct: 415 RAGRSGEAILFVTPRERRMLNSIERATNAPLDEMELPSVEDVNEA 459
>gi|350264711|ref|YP_004876018.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597598|gb|AEP85386.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 494
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 157/270 (58%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
++ F+ A L+E+ + AA ++S
Sbjct: 394 NNLNFYMTAAAELLEDHDAVTVVAAAIKMS 423
>gi|352093689|ref|ZP_08954860.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680029|gb|EHA63161.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 602
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 14/273 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE LP +RQ +LFSATMP+ +++LS++YL P I + EK A
Sbjct: 203 MLRMGFIDDVEWILEQLPEERQVVLFSATMPNEIRRLSKRYLREPAEITI--KTKEKEAR 260
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ + K L+ ++ G I+F +TK V+ +L + A L+G
Sbjct: 261 RIRHRCITMQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNG 319
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 320 DVPQNQRERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTG 379
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ G AIL T +RR V +LER VG E + P ++ +S +++ L+
Sbjct: 380 RAGRSGEAILFITPRERRFVGNLERAVGQAIEPMDIPSNAEINQSRLDRLRTRLSAEATS 439
Query: 237 --HPES-----VEFFTPTAQRLIEEKGTDALAA 262
PE E AQ L E G LAA
Sbjct: 440 EDKPEEETALLQELIQRVAQELEVEPGQLTLAA 472
>gi|429503967|ref|YP_007185151.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429485557|gb|AFZ89481.1| hypothetical protein B938_02225 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 494
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 429
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 152/270 (56%), Gaps = 6/270 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
M +GF +D+ELI+ ++P +RQ++ FSATMP + +++Y NP I +V E
Sbjct: 199 MFDMGFRDDIELIVNHMPEERQTIFFSATMPKEIVDFAKRYQTNPKTIKVV--HKELTVP 256
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ Y K ILS LI +Y +IVF TK+ DE+++ L + LHG
Sbjct: 257 RVEQYYFELKEHMKTEILSRLIDIY-NPKLSIVFCNTKKKVDELTIELQGRGYFVDGLHG 315
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++ FR G +LVATDVAARGLD+ +VD++ +Y++P D E +VHR GRT
Sbjct: 316 DLKQSQRDRVMSKFRTGNIDILVATDVAARGLDVDDVDIVFNYDIPQDEEYYVHRIGRTA 375
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+EG A+ R ++ +ER K P ++D+ E ++ ++ + + +
Sbjct: 376 RAGREGIALSFVVGRDRHRIKDIERYTKTKIVRKDLPTLKDMEERQSDILIEKIKDEIDK 435
Query: 239 ESVEFFTPTAQRLIEEKGTD-ALAAALAQL 267
++ + +++EE T +AAAL +
Sbjct: 436 GQLDRYEKMLNQILEEDYTSFDIAAALLKF 465
>gi|154684961|ref|YP_001420122.1| hypothetical protein RBAM_004920 [Bacillus amyloliquefaciens FZB42]
gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
Length = 511
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 174 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 232 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 351 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 410
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 411 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 446
>gi|384264053|ref|YP_005419760.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452854495|ref|YP_007496178.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|380497406|emb|CCG48444.1| ATP-dependent RNA helicase DeaD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|452078755|emb|CCP20506.1| ATP-dependent RNA helicase; cold shock [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 494
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSDHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 429
>gi|384049181|ref|YP_005497198.1| DEAD/DEAH box helicase [Bacillus megaterium WSH-002]
gi|345446872|gb|AEN91889.1| DEAD/DEAH box helicase domain protein [Bacillus megaterium WSH-002]
Length = 484
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 161/277 (58%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P Q++LFSATMP+ +++++ K+++ P + + E
Sbjct: 137 MLNMGFIEDIEKILSNVPENHQTLLFSATMPTPIRRIAEKFMNEPKVVKVK--AKEVTMP 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + K IL+ L+ + + I+F +TKR DE+S AL +++ +HG
Sbjct: 195 NITQYYLEVQEKRKFDILTRLLDMQSPE-LAIIFGRTKRRVDELSEALNMRGYSAQGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQSKRLSVLRQFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T + + ++ER K E ++PP +++ +E L V
Sbjct: 314 RAGKMGAAMTFVTPRETGQLHNIERTTKRKMERMTPPTLDEAMEGQQRIAADKLTESVTQ 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
++ ++ A+ L+EE + +L AA +L F++ P+
Sbjct: 374 GNLSYYKQLAEELLEEHDSVSLVAAAIKL--FTKEPN 408
>gi|308172326|ref|YP_003919031.1| DEAD/DEAH box helicase [Bacillus amyloliquefaciens DSM 7]
gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens DSM 7]
Length = 511
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 174 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 232 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 351 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISE 410
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 411 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 446
>gi|344340391|ref|ZP_08771316.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343799561|gb|EGV17510.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 623
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I E PP RQ LFSATMP+ ++++++ L +P+ I + D + +
Sbjct: 163 MLNMGFAEDIDWIFEQTPPGRQVALFSATMPAGIRRVAQTRLSDPVEIRV--KADSETVD 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T K +L+ ++ + G +VF +TK E++ L + A+E L+G
Sbjct: 221 TIDQHHCVVTRFHKLDVLTRILELEPFDG-MLVFVRTKHATVELADKLKAHGFAAEPLNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ RERT+ +QG +LVATDVAARGLD+ + +++Y++P DP +VHR GRTG
Sbjct: 280 DMSQEMRERTVERLKQGHLDILVATDVAARGLDVERLSHVVNYDIPTDPSAYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL+ +R +R++ER + + PP + ES ++ A L E
Sbjct: 340 RAGRAGRAILLVEPRERGLLRAIERTIRRSVPAMEPPSASQLSESRIDRFTAELRKTLTE 399
Query: 240 S-VEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
++FF RL E+ + + AAALA L+ RP
Sbjct: 400 QDLDFFYRLVARLATEQELEMMDIAAALAYLTQRERP 436
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 160/268 (59%), Gaps = 9/268 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ LP +RQ+MLFSATMP +K++ +++ +P ++ + E +
Sbjct: 155 MLNMGFLDDIEDIIKQLPEERQTMLFSATMPPEIKRVGVQFMKDPKHVKIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I + + + K +++ V + TIVFT+TKR DE++ L + + A +HG
Sbjct: 213 LIDQFYVRSRDFEKFDVMTRFFDVQSPD-LTIVFTRTKRRVDEIASGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R + +N FR GK +LVATDVAARG+DI +V + +Y++P DP+++VHR GRTG
Sbjct: 272 DLTQKRRTQIMNDFRHGKLDILVATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES---SAEQVVATLNGV 236
RAGK G ++ T ++ +R +E+ + + PP E+ S +A++ +A L V
Sbjct: 332 RAGKHGVSMTFVTPNEMDYLREIEKLTKVRMLPLKPPSDEEAFVSQLGAAKETIADL--V 389
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAAL 264
+ E + A+ L+ E + L AAL
Sbjct: 390 NKADKEKYAKAAESLLNEYDAEDLVAAL 417
>gi|407695316|ref|YP_006820104.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407252654|gb|AFT69761.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 559
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 147/248 (59%), Gaps = 10/248 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE+ P +RQ LFSATMP+ +++++ ++L +P I + D
Sbjct: 161 MLRMGFIDDVEWILEHTPDERQLALFSATMPNVIRRVAERHLKSPKWIRI--ENDTTTKS 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
GI+ S + +K + ++ G IVF +TK+ E++ L + +EAL+G
Sbjct: 219 GIRQRFWSVSGLNKLDAMCRILEGETHDG-VIVFARTKQSTLELAEQLQRRGLRAEALNG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRE+T+ R+G+F +L+ATDV ARGLD+P + +I+Y++P D E +VHR GRTG
Sbjct: 278 DIPQAQREKTVARLREGRFDLLIATDVVARGLDVPRISHVINYDMPADTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS-----AEQVVATLN 234
RAG+ G AIL + +R +R++ER G E + P V D L S EQ+VA L
Sbjct: 338 RAGRNGEAILFVSHRERGMLRAIERATGQSLESMDLPSV-DALNSKRLAKLQEQLVAGLE 396
Query: 235 GVHPESVE 242
H E E
Sbjct: 397 SKHREEAE 404
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 169/294 (57%), Gaps = 14/294 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL+ LP +RQ +LFSATMP+ +++LS++YL P I + ++ A+
Sbjct: 212 MLRMGFIDDVEWILDQLPEERQVVLFSATMPNEIRRLSKRYLQEPAEITI--KTKDREAK 269
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ +I+ + K L+ ++ G I+F +TK V+ +L + A L+G
Sbjct: 270 RIRQRSITMQNSHKIEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNG 328
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT++ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 329 DVPQNQRERTVDRLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTG 388
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T +RR V +LER V E + P ++ +S +++ L+
Sbjct: 389 RAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMDIPSNAEINQSRLDRLRNRLSEAAVC 448
Query: 240 SVEFFTPTAQRLIE------EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287
+ TP Q LI+ E D LA A +L +P L++ ++ W+
Sbjct: 449 EADDETPLLQELIQRVAQEHELSADQLALAALRLVVGDQP----LLVSGDESWL 498
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 162/277 (58%), Gaps = 20/277 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ--DEKL 58
ML++GF +DV+ IL P RQ++ FSATMP ++ L +L++P+NI + Q +++
Sbjct: 157 MLSMGFIDDVKKILRQSPKTRQTVCFSATMPPAIRDLVENFLNDPINITIKQPQVTPDRI 216
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EAL 117
A+ ++Y I + + +L I A I+F +TKR A E++ L S +
Sbjct: 217 AQ--EVYMIPRGWSKTKALLP--ILEMANPESAIIFVRTKRTASELTNELVEAGQSADEY 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q+QRE+ + F+ GK ++VATD+AARGLD+ N+ +I+++LP++ E+++HR GR
Sbjct: 273 HGDLNQNQREKLVRRFKDGKIKMIVATDIAARGLDVENLSHVINFDLPDNTESYIHRIGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV-------LESSAEQVV 230
TGRAGK GTAI + S RR +R +ER V + + P +V LE+ + +
Sbjct: 333 TGRAGKTGTAIALVEPSDRRLLRQIERRVKQSLKVSTIPSRTEVEAQRVTRLETQVREAL 392
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
A E + F P +RL +E A+AAA+ Q+
Sbjct: 393 AG------ERMASFLPIVKRLGDEYDPQAIAAAVLQM 423
>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 667
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 148/255 (58%), Gaps = 20/255 (7%)
Query: 1 MLAVGFEEDVELIL---------ENLPPKR--QSMLFSATMPSWVKKLSRKYLDNPL--- 46
ML +GF+E V+ ++ EN R Q +LFSAT+PSW+KK+ + + N
Sbjct: 176 MLEMGFKEYVDKVIDFVKKQTSEENTDKNRRFQILLFSATVPSWIKKIVNEIMSNDTVTV 235
Query: 47 ---NIDLVGNQDEKLAEG--IKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRD 100
NI + GN+D + I+ AI + +L D+IT+YA GK I+FT+TK+
Sbjct: 236 DVTNISVDGNEDSSDSGNTRIRHLAIQCAYPQRTALLKDIITMYAGIHGKCIIFTETKQT 295
Query: 101 ADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160
A+E+S+ T + LHGDI Q QRE L F++G++ LVATDVAARGL I +V ++I
Sbjct: 296 ANEISMRSTISDMCQVLHGDIQQSQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVI 355
Query: 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220
P D +T++HR+GRTGRAGK GTAIL + + ++E+ F+ + P E+
Sbjct: 356 QLAPPRDIDTYIHRAGRTGRAGKFGTAILFCNMNDYPFLLNIEKIGNINFQRIGAPQFEE 415
Query: 221 VLESSAEQVVATLNG 235
+L+ +A+ V L G
Sbjct: 416 ILQKTADSVGEYLVG 430
>gi|453364213|dbj|GAC80062.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia malaquae NBRC
108250]
Length = 574
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 138/222 (62%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P K+Q LFSATMP+ + +L+RKYL+NP + + A
Sbjct: 168 MLTMGFAEDVERILADTPDKKQVALFSATMPASIGRLARKYLNNPQEVTV--KAKTATAS 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K L+ ++ V G I+F +TK +E++ L S +++ A++G
Sbjct: 226 NITQKYLQVSHQRKLDALTRVLEVETFDG-MIIFARTKSATEELAEKLRSRGLSAMAING 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 285 DMVQAQRERTINQLKDGSLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ GTA+L + +R +RS+ER E + P V+DV
Sbjct: 345 RAGRSGTALLFVSPRERHLLRSIERHTRQSIEEIDLPSVDDV 386
>gi|384162855|ref|YP_005544234.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens LL3]
Length = 480
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 143 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 200
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 201 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 259
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 260 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 319
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 320 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISE 379
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 380 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 415
>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 623
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 154/276 (55%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P RQ LFSATMP +K+++ KYLDNP+++ + E
Sbjct: 161 MLKMGFIDDIEWILEHTPKTRQLALFSATMPEQIKRVANKYLDNPVHVKIAATT--STVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 TIEQRFVQVSQHNKLEALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + ++G+ +++ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAIEQLKRGQLDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T + R +R++ER + + P E V E ++ + + +
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATNSRIAPMDVPSPETVTERRLSRLGEQVAEIISQ 397
Query: 240 SVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+EF L + E TD LAAAL + RP
Sbjct: 398 DLEFMKGAVATLCQQLEVDTDILAAALLKQVQKDRP 433
>gi|384158050|ref|YP_005540123.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|384167076|ref|YP_005548454.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens XH7]
gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
amyloliquefaciens TA208]
gi|341826355|gb|AEK87606.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
XH7]
Length = 494
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 429
>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 551
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 140/225 (62%), Gaps = 5/225 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+E+++ I++ LP RQS+LFSATM ++ ++R YL +P ++++ Q +++
Sbjct: 160 MLNMGFKEELDYIVKMLPKNRQSLLFSATMSKYMNAIARTYLTDP--VEIIAGQKNIVSD 217
Query: 61 GIK-LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
G+K +Y + K + L ++ + G I+F +TK++ E++ L ++AL+
Sbjct: 218 GVKHIYYMVGHLNKKYSALKRIVDI-NPGIYGIIFCETKKETKEIAEYLIKDGYNADALY 276
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QRE +N FR LVATDVAARGLD+ N+ +I+Y LP + + ++HRSGRT
Sbjct: 277 GDLSQTQRESVMNRFRNKNLQFLVATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRT 336
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
GRAG G ++ + S + R ++ E+ +G FE V P +++ E
Sbjct: 337 GRAGNSGISVCIIHSKETRNLKEFEKRIGKSFERVMVPNGKEICE 381
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 142/233 (60%), Gaps = 14/233 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL P +RQ+MLFSAT P+ VK+L+ +Y+ +P +I + N+ E
Sbjct: 155 MLDMGFIDDIEAILRETPSERQTMLFSATFPNEVKRLALRYMRDPQHITV--NRGEVTVP 212
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R + S+ I + I+F +TKR D++ AL + +
Sbjct: 213 QIDQVCYKVLERNKLDSLCRIVDSEDIQL------GIIFCRTKRGVDDLVEALLARGYLA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR+R + FR+ + +LVATDVAARGLD+ +V +I+Y++P DPE++VHR
Sbjct: 267 DGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
GRTGRAGK G AI + T + + ++ +ER++ K P +EDV E AE
Sbjct: 327 IGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREVPSLEDVAERQAE 379
>gi|408793651|ref|ZP_11205257.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408462155|gb|EKJ85884.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 528
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 137/224 (61%), Gaps = 6/224 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I LP KRQ++LFSATMP +KKL+ KY +P ++ + EK ++
Sbjct: 163 MLDMGFMDDIESIFNLLPTKRQTLLFSATMPEPIKKLASKYQTHPAHVKIAAT--EKSSK 220
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
I ++Y + A +R I I Y K I+FT+TK++AD++ L EALH
Sbjct: 221 NIEQVYYVIDEA--EREIAVVRILDYENPYKAIIFTKTKKEADDLKATLGFKGYPVEALH 278
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QRE+ L G+ +LVATDVAARGLD+ ++ L+I+Y LP D E++ HR GRT
Sbjct: 279 GDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRT 338
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
GRAGK G A+ + T+ + R + L+ G + P ++VL
Sbjct: 339 GRAGKSGKAVTLVTTRESRALLRLKGTSGTNLTIAALPTKKEVL 382
>gi|347529383|ref|YP_004836131.1| putative helicase [Sphingobium sp. SYK-6]
gi|345138065|dbj|BAK67674.1| putative helicase [Sphingobium sp. SYK-6]
Length = 588
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 182/346 (52%), Gaps = 25/346 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +R+++LFSATMP+ + L+R+Y + L I V +QD +
Sbjct: 159 MLDMGFREDLEEILDATPSERRTLLFSATMPAPIVALARRYQRDALRISTV-SQDRGHGD 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I A++ + + +L+ + + I+F T+ + + L + AL G
Sbjct: 218 -ISYQAMAIAPSDIENAVVNLLRFH-EAETAILFCGTRDNVRHLHANLVERGFGAVALSG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ++R + L R + V VATDVAARG+D+PN+ L+IH ++P D ET HRSGRTG
Sbjct: 276 EHSQNERNQALQALRDRRARVCVATDVAARGIDLPNLSLVIHVDIPRDAETLQHRSGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAGK+GTA+L+ +RR V S+ R E+VSPP +D+ + +E+++ TL + P
Sbjct: 336 RAGKKGTAVLIVPYQRRRRVESMLRGARIPAEWVSPPSADDIRRADSERLLTTL--LAPV 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQ-----------LSGFSRPPSSRSLINHEQG-- 285
E E A RL+ E+ +AAAL L G P +R +G
Sbjct: 394 ELDEQDHKLADRLLAERSAHDIAAALVHAHRVRLPAPEDLLGSDAPQEARQPRAGFEGSA 453
Query: 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD 331
W L + R R AR ++ L + +EIG I I A +
Sbjct: 454 WFRLNIGR-----RQNAEARWILPLLCRRGHVSRNEIGAIRIAASE 494
>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448823346|ref|YP_007416511.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
gi|448276843|gb|AGE36267.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 778
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 141/225 (62%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMPS ++ LS++YL++P + + Q + AE
Sbjct: 286 MLNMGFQEDVERILEDTPEDKQVALFSATMPSAIRHLSKRYLNSPQEVTVKSTQ--RTAE 343
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L+ ++ V I+F +TK D +E++ L + + A++G
Sbjct: 344 NIEQDYLIVHHREKLDALTRILEV-TDFDAMIMFVRTKNDTEELAERLRARGYEAAAING 402
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++P D E++VHR GRTG
Sbjct: 403 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPRDTESYVHRIGRTG 462
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G A+L T +RR ++S+ER + + P V+ V E+
Sbjct: 463 RAGRSGRAVLFVTPRERRMLKSIERATKSRLNEIELPSVDQVNEA 507
>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
Length = 513
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 174 MLNMGFIEDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + +IVF +TKR DE++ AL +E +HG
Sbjct: 232 NIQQFYLDIHERKKFDTLTRLLDIQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+ T ++ +R++E+ K + + P +++ +E + V L + E
Sbjct: 351 RAGRTGMAMTFITPREKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISE 410
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 411 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDA 446
>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
Length = 511
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 154/268 (57%), Gaps = 9/268 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E P +RQ++LFSATMP+ +KK+ K++ +P + + E A+
Sbjct: 155 MLDMGFLPDIEKIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQVTV--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y I + K +L+ +I V + +VF +TKR DEV+ L + + A +HG
Sbjct: 213 LVDQYYIRSKEFEKFDMLTRIIDVQSPK-LAVVFGRTKRRVDEVAKGLVARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L+ FR G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMNILHQFRDGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS---AEQVVATLNGV 236
RAG GT++ T+ + +R +ER + + PP E+ AEQ V L V
Sbjct: 332 RAGAHGTSVTFVTNWEMDYLRDVERLTKKRLLPLKPPTEEEAFIGRAVMAEQNVQEL--V 389
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAAL 264
V+ F A RL+E+ L AAL
Sbjct: 390 KKTDVDKFGEQADRLLEQYDARTLVAAL 417
>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 529
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 6/223 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I LP KRQ++LFSATMP +KKL+ KY +P ++ + EK ++
Sbjct: 163 MLDMGFMDDIESIFNLLPTKRQTLLFSATMPEPIKKLASKYQTHPAHVKIAAT--EKSSK 220
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
I ++Y I A +R I I Y K I+FT+TK++AD++ L+ EALH
Sbjct: 221 NIEQVYYIIDEA--EREIAVVRILDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALH 278
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QRE+ L G+ +LVATDVAARGLD+ ++ L+I+Y LP D E++ HR GRT
Sbjct: 279 GDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRT 338
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
GRAGK G A+ + T+ + R + L+ G + P ++V
Sbjct: 339 GRAGKSGKAVTLVTTRESRALLRLKGTSGTNLTIAALPTKKEV 381
>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 479
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 160/271 (59%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++P +RQ++LFSATMP+ +++++ +++ +P I + E
Sbjct: 137 MLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMAERFMRDPQIIRVKAK--EMTVP 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + +K +L+ L+ + + I+F +TKR DE++ AL +E +HG
Sbjct: 195 LIEQFYVEVQERTKFDVLTRLLNIQSPE-LAIIFGRTKRRVDELAEALNLRGFLAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAGKEG A+ T ++ + +ER K + PP + + LE + V ++ +
Sbjct: 314 RAGKEGMAMTFITPREKSYLAVVERTTKSKMGKMVPPTLAEALEGQQKAAVDKISQAISA 373
Query: 239 ESVEFFTPTAQRLIEEK-GTDALAAALAQLS 268
++E + A L+E+ +D +AA L L+
Sbjct: 374 NNLENYKEAADELLEQHDASDVVAAVLKLLT 404
>gi|417303385|ref|ZP_12090443.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
Length = 862
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV+ +LE P RQ LFSAT+P ++K++ +YL++P I + A
Sbjct: 390 MLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKIADEYLNDPARITIKSKT--ITAA 447
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ A+ + K L+ ++ V G IVFT+TK V+ L+ ++ AL+G
Sbjct: 448 SVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSVAEKLSQQGFSAIALNG 506
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT++ ++G+ VLVATDVAARGLD+P + + +++LP+D E++VHR GRTG
Sbjct: 507 DMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFDLPHDSESYVHRIGRTG 566
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G AI+ T++QRR +R +E E + P V D+ E+ + + V
Sbjct: 567 RAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSAD 626
Query: 239 ESVEFFTPTAQRLIEEKGT--DALAAALAQLSGFSRP 273
+ + + + EE G + +AAALA++S RP
Sbjct: 627 QDLTVYKDMIAQYAEESGKPMEMIAAALAEMSQNGRP 663
>gi|383786573|ref|YP_005471142.1| DNA/RNA helicase [Fervidobacterium pennivorans DSM 9078]
gi|383109420|gb|AFG35023.1| DNA/RNA helicase, superfamily II [Fervidobacterium pennivorans DSM
9078]
Length = 548
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I++ P +++ LFSATMP + ++RK++ + +I V ++E E
Sbjct: 170 MLDMGFLDDVLEIIKQTPETKRTFLFSATMPKEIVSIARKFMKDYEHISTV--KEELTTE 227
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ K +L +I + + IVF QTK + DE++ L+ + ++ LHG
Sbjct: 228 NAEQLYFEIEEDDKLPLLCRIIDMNPEF-YGIVFCQTKAEVDEIARKLSDLGYNADGLHG 286
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ QRER L+ F++ + +LV TDVAARG+DI + +I+Y +P DPE +VHR GRTG
Sbjct: 287 DYSQSQRERVLDKFKKKQLNILVTTDVAARGIDIEGLTHVINYSVPRDPEYYVHRIGRTG 346
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK+G AI T S ++R K P+VED+L E VV T+
Sbjct: 347 RAGKKGLAITFVTRSDYYHFTRVKRFTKAKIAKDKIPMVEDILNRQLENVVNTIKKESYV 406
Query: 240 SVEFFTPTAQRLIEEKG-TDALAAALAQL 267
S E F AQ+LIEE G T+A+ L L
Sbjct: 407 SNELFRQVAQKLIEEMGPTEAVEMLLHTL 435
>gi|189913376|ref|YP_001964605.1| DEAD/DEAH box helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 534
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 137/223 (61%), Gaps = 6/223 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I LP KRQ++LFSATMP +KKL+ KY +P ++ + EK ++
Sbjct: 168 MLDMGFMDDIESIFNLLPTKRQTLLFSATMPEPIKKLASKYQTHPAHVKIAAT--EKSSK 225
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
I ++Y I A +R I I Y K I+FT+TK++AD++ L+ EALH
Sbjct: 226 NIEQVYYIIDEA--EREIAVVRILDYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALH 283
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QRE+ L G+ +LVATDVAARGLD+ ++ L+I+Y LP D E++ HR GRT
Sbjct: 284 GDLNQKQREQVLKSLHDGRVKILVATDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRT 343
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
GRAGK G A+ + T+ + R + L+ G + P ++V
Sbjct: 344 GRAGKSGKAVTLVTTRESRALLRLKGTSGTNLTIAALPTKKEV 386
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 165/286 (57%), Gaps = 14/286 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+ED+ELIL+ + + Q++LFSATMP + ++++KY ++P + ++ E ++
Sbjct: 186 MLNMGFKEDIELILQQITTEHQTVLFSATMPKPILQIAKKYQNSPEIVKVISK--ELTSD 243
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K +L L+ Y ++F TK+ DEV+ L A+EALHG
Sbjct: 244 NIEQSFLPINPNYKTDVLVRLLA-YNGWESMLIFCNTKQRTDEVAETLIQKGYAAEALHG 302
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++QHQR +N FR G+ +LVATDVAARG+D+ NV+ +I+Y++P DPE +VHR GRTG
Sbjct: 303 DLAQHQRNLVMNKFRHGRVQILVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRTG 362
Query: 180 RAGKEGTAILMFTSSQRRTVR--SLERDVGCKFEFVSPPVVEDVLESSA----EQVVATL 233
RAG +G +I F S +R R +ER + + P ++VL E + AT+
Sbjct: 363 RAGNKGVSI-TFISGRREVYRLNDIERYSKSRIPQGTIPTQQEVLAKKQLRFMENLKATI 421
Query: 234 NG-VHPESVEFFTPTAQRL-IEEKGTDALAAALAQLSGFSRPPSSR 277
N E +E +T + L IE + +AAA+ L S P+ R
Sbjct: 422 NDEKKAEELESYTALIEMLEIEGITSKQVAAAVLSLQ-LSNKPTDR 466
>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Bacillus pumilus ATCC 7061]
Length = 496
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 157 MLNMGFIEDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + +IVF +TKR DE++ AL +E +HG
Sbjct: 215 NIQQFYLDIHERKKFDTLTRLLDIQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+ T ++ +R++E+ K + + P +++ +E + + L + E
Sbjct: 334 RAGRTGMAVTFITPREKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISE 393
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 394 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDA 429
>gi|407980113|ref|ZP_11160911.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
gi|407413167|gb|EKF34895.1| ATP-dependent RNA helicase [Bacillus sp. HYC-10]
Length = 496
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 157 MLNMGFIEDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + +IVF +TKR DE++ AL +E +HG
Sbjct: 215 NIQQFYLDIHERKKFDTLTRLLDIQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+ T ++ +R++E+ K + + P +++ +E + V L + E
Sbjct: 334 RAGRTGMAMTFITPREKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISE 393
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 394 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDA 429
>gi|440781688|ref|ZP_20959916.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
gi|440220406|gb|ELP59613.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
pasteurianum DSM 525]
Length = 522
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/334 (32%), Positives = 182/334 (54%), Gaps = 14/334 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLA 59
ML +GF +D+E I++N +RQ++LFSATMP +KKLS YL + +I ++ +
Sbjct: 158 MLNMGFIDDIEEIIKNTNSERQTLLFSATMPKPIKKLSENYLKKDVKHIQIL--KKSLTV 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALH 118
I Y ++ L ++ + ++ I+F +TK+ DE+ ++S + E +H
Sbjct: 216 SKIDQYYYEVHNNTRLESLCRILDI-SEPESAIIFCRTKKSVDELVSTMSSKGYNIEGMH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q R TLN F+ G T L ATDVAARG+D+ N+ +I+YELP D E++VHR GRT
Sbjct: 275 GDMKQKNRLSTLNKFKNGNLTFLAATDVAARGIDVENITHVINYELPQDTESYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVH 237
GRA + GTAI + T ++ +E+D+ K P +++++ ++ +V+ + N +
Sbjct: 335 GRANRSGTAISLITRKDFTKLKQIEKDIKSKITKQKIPTMQEIINIKSKNIVSKVSNILS 394
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSR---SLINHEQGWVTLQLTRD 294
E + F P + L +E + +AAAL + + + S+ L N E V L +
Sbjct: 395 TEEYKKFEPIIENLGKEYSLNQIAAALLK-NALDKEISTEYNDDLFNQENS-VRLFM--- 449
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
S R ++ +S++ F+ ++ IG I I+
Sbjct: 450 SIGRRDGINIKSLLEFIDTTSTVNSNYIGSIDIL 483
>gi|389574285|ref|ZP_10164350.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
gi|388426047|gb|EIL83867.1| ATP-dependent RNA helicase [Bacillus sp. M 2-6]
Length = 516
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 162/278 (58%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P + Q++LFSATMP+ +K+++ +++ NP ++ + E
Sbjct: 174 MLNMGFIEDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + +IVF +TKR DE++ AL +E +HG
Sbjct: 232 NIQQFYLDIHERKKFDTLTRLLDIQSPE-LSIVFGRTKRRVDELTEALNLRGYTAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+ T ++ +R++E+ K + + P +++ +E + + L + E
Sbjct: 351 RAGRTGMAMTFITPREKDMLRAIEQTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISE 410
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ D++ A + ++ P +
Sbjct: 411 NNLNFYMTAAAELLEDH--DSVTVVAAAIKMMTKEPDA 446
>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
Length = 539
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 158/277 (57%), Gaps = 17/277 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL + +RQ++LFSATMP +KKLSRKY+++P + + N+ E A
Sbjct: 159 MLDMGFIDDIESILRQVKNERQTLLFSATMPPAIKKLSRKYMNDPQTVSI--NRREVTAP 216
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I + +K R I S+ I + I+F +TK+ E++ AL + +
Sbjct: 217 SIDQFYYKVLERNKLDSLCRIIDSEQIDL------GILFCRTKKGVAELTEALQARGYIA 270
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD++Q QR+ + FR L+ATDVAARG+D+ NV +I+Y++P DPE++VHR
Sbjct: 271 DGLHGDLTQSQRDAVMRKFRDSSIEFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHR 330
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE---QVVA 231
GRTGRAG++G A+ + T + + +RS+E+++ P +EDV+E E + +A
Sbjct: 331 IGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKMSIPSQEVPTIEDVVEKQKESWKKQIA 390
Query: 232 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
F + L+ E + + +AL QL+
Sbjct: 391 HRIEKGSNQKHLFEQMTEELMAEYDSKEVISALLQLN 427
>gi|374385841|ref|ZP_09643343.1| hypothetical protein HMPREF9449_01729 [Odoribacter laneus YIT
12061]
gi|373224786|gb|EHP47122.1| hypothetical protein HMPREF9449_01729 [Odoribacter laneus YIT
12061]
Length = 596
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 179/360 (49%), Gaps = 47/360 (13%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+ED+ IL+ P +R + LFSATMP V++++R YL +P I VG +++ A+
Sbjct: 158 MLNMGFKEDLNFILDATPRERNTYLFSATMPREVERIARNYLHSPQEI-AVGKKNQG-AD 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ A L +I A I+FT+TK DA +++ L I +ALHG
Sbjct: 216 TVRHQYYQVKAKDFYETLHRVIDC-APDMYAIIFTRTKIDARDIAHKLQKDGIDCDALHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+ + FR + VLVATDVAARGLD+ N+ +I+Y LP D E++ HRSGRTG
Sbjct: 275 DLSQAQRDEVMARFRSKRLKVLVATDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAGKEG ++ + S ++ +R +E + +FE+ P E+V + A++++A
Sbjct: 335 RAGKEGISVAIINSKEKSKLRRIEGILKKQFEYKEVPGGEEVCRAQLLYYADKILAA--- 391
Query: 236 VHPESVEFFTPTAQRLIEE-------------------------KGTDALAAALAQLSGF 270
E E TP Q L ++ G + L + A++ GF
Sbjct: 392 ---EQKETLTPYQQELFDKFEELSKEELIQKIVSYEFGRLLKKYAGVEDLNLSEAEIKGF 448
Query: 271 SRPPSSRSLINHEQGWVT---LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
+G T + + R F S R +M ++ P EIG I I
Sbjct: 449 PSDKKKGGRERESEGQFTVFSVNVGRQDDF-----SPRDLMTIINKYAPQKGLEIGGIRI 503
>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 603
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 142/227 (62%), Gaps = 14/227 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE LP +RQ +LFSATMP ++KLS++YL +P I + + E A+
Sbjct: 206 MLRMGFIDDIEWILEQLPNERQMVLFSATMPPEIRKLSKRYLRDPAEITIKAKKKE--AQ 263
Query: 61 GIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALT-SIIASE--- 115
I+ + I+ + K +L ++ + Y +G I+F +TK ++L L S+ AS
Sbjct: 264 LIRQHYITVQNSYKLEVLRRVLELNYGEG--VIIFARTK----AITLKLAESLEASNHNV 317
Query: 116 -ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
L+GD+ Q+ RERT+ RQG +LVATDVAARGLD+ + L+I+Y++P D E +VHR
Sbjct: 318 AVLNGDVPQNLRERTVERLRQGGINILVATDVAARGLDVERIGLVINYDMPFDSEAYVHR 377
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
GRTGRAG+ G AIL + +R + +LER VG E + P E +
Sbjct: 378 IGRTGRAGRSGEAILFISPRERSYLNNLERAVGQSIERMEIPNNESI 424
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 142/226 (62%), Gaps = 7/226 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ++ FSATMP + L++KY ++P + ++ + E E
Sbjct: 160 MLDMGFREDIESILSDCPEERQTVFFSATMPKPILDLTKKYQNDPEIVKVL--KKELTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K ++S L+ + + ++VF TKR DEV+ L + I +EALHG
Sbjct: 218 NISQVYYEVKPSLKLELMSRLMNL-NQFNLSVVFCNTKRITDEVTEELMARGIQAEALHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR + + FR+G +VLVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 277 DLSQAQRSKVMGKFRKGHVSVLVATDVAARGIDVNDVEAVFNYDLPLDEENYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAGK GTAI F + +R + ++ LER + + PP V D++E
Sbjct: 337 RAGKSGTAI-SFVTGRRDMQKLKDLERFIKTNINRMDPPSVADLVE 381
>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 465
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 14/233 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL P RQ+MLFSAT P+ VK+L+ +Y+ +P +I + N+ E
Sbjct: 171 MLDMGFIDDIEAILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITV--NRGEVTVP 228
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R + S+ I + I+F +TKR D++ AL + +
Sbjct: 229 QIDQVCYKVLERNKLDSLCRIVDSEDIQL------GIIFCRTKRGVDDLVEALLARGYLA 282
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR+R + FR+ + +LVATDVAARGLD+ +V +I+Y++P DPE++VHR
Sbjct: 283 DGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHR 342
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
GRTGRAGK G AI + T + + ++ +ER++ K P +EDV E AE
Sbjct: 343 IGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREVPSLEDVAERQAE 395
>gi|441523228|ref|ZP_21004858.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
gi|441457193|dbj|GAC62819.1| ATP-dependent RNA helicase DeaD [Gordonia sihwensis NBRC 108236]
Length = 596
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 139/222 (62%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P ++Q LFSATMP+ + +L+RKYL+NP + + A+
Sbjct: 173 MLTMGFAEDVERILADTPDQKQVALFSATMPAAIGRLARKYLNNPQEVTV--KNKTATAQ 230
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
I + + K L+ ++ V G IVF +TK +E++ L + +++ A++G
Sbjct: 231 NITQKYLQVSHQRKLDALTRVLEVEPFDG-MIVFVRTKSATEELAEKLRARGLSAMAING 289
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 290 DMVQAQRERTINQLKDGSLDILVATDVAARGLDVDRISHVVNYDIPHDVESYVHRIGRTG 349
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ GTA+L + +R +RS+ER E + P V+DV
Sbjct: 350 RAGRSGTALLFVSPRERHLLRSIERHTRQDLEEIDLPSVDDV 391
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP RQ++LFSATMP ++K++ +++ P +I + E E
Sbjct: 156 MLNMGFVEDIEKILGTLPESRQTLLFSATMPQQIRKIADRFMTTPTHIKV--KAKEMTVE 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K +L LI + +I+F +TK+ DE++ L ++ LHG
Sbjct: 214 NIDQSFIELKENQKFDVLCRLIDTDSPE-LSIIFGRTKKRVDEMTEGLVQRGYTADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R++ + F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRDQVIRRFKKGTIDILVATDVAARGLDITGVTHVYNFDVPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G+AI T + ++++ER K P ++++LE + + L V
Sbjct: 333 RAGKTGSAITFVTPREFGQIKTIERVTNKKMSRRHAPTLDEILEGNLKLAAQELIKRVEA 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ + +T AQ L+EE +A+ A L G ++ P +
Sbjct: 393 KNSQEYTTLAQELLEE--YEAVELISAALKGLTKEPDA 428
>gi|392531372|ref|ZP_10278509.1| ATP-dependent RNA helicase; cold shock [Carnobacterium
maltaromaticum ATCC 35586]
gi|414082690|ref|YP_006991393.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412996269|emb|CCO10078.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 541
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 152/267 (56%), Gaps = 7/267 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +P RQ++LFSATMP +K++ K+++ P ++ + Q +++
Sbjct: 155 MLNMGFLEDIEKIIKEVPKTRQTLLFSATMPDAIKRIGVKFMNEPEHVRI---QATAMSD 211
Query: 61 G-IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALH 118
I Y + K I++ L+ V TIVF +TKR DE+S L +E +H
Sbjct: 212 SLIDQYYVRCKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELSKGLEMRGYRAEGIH 270
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ +R L F++G +LVATDVAARGLDI V + +Y++P DPE++VHR GRT
Sbjct: 271 GDLSQQKRMSVLKSFKKGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRT 330
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VH 237
GRAGKEG ++ T ++ +R +E K + PP + E + + T V
Sbjct: 331 GRAGKEGMSVTFITPNEMGYLRVIEDLTKKKMTTLRPPTNAEAFEGQVKAAMETAEELVK 390
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAAL 264
+E + A +L+E+ T +AAA
Sbjct: 391 SNDLERYEKAAAQLLEDYDTTDIAAAF 417
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 14/233 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL P RQ+MLFSAT P+ VK+L+ +Y+ +P +I + N+ E
Sbjct: 170 MLDMGFIDDIEAILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITV--NRGEVTVP 227
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R + S+ I + I+F +TKR D++ AL + +
Sbjct: 228 QIDQVCYKVLERNKLDSLCRIVDSEDIQL------GIIFCRTKRGVDDLVEALLARGYLA 281
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR+R + FR+ + +LVATDVAARGLD+ +V +I+Y++P DPE++VHR
Sbjct: 282 DGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVPQDPESYVHR 341
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
GRTGRAGK G AI + T + + ++ +ER++ K P +EDV E AE
Sbjct: 342 IGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREVPSLEDVAERQAE 394
>gi|407475055|ref|YP_006789455.1| DEAD/DEAH box helicase [Clostridium acidurici 9a]
gi|407051563|gb|AFS79608.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium acidurici 9a]
Length = 526
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 177/334 (52%), Gaps = 12/334 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLA 59
ML +GF +D+E I+ N P RQ+MLFSATMP +K+L++ Y+ + +I +V N
Sbjct: 158 MLDMGFIDDIEEIIRNCPEDRQTMLFSATMPPQIKRLAKSYMKEDMKHISIVKNT--ITV 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALH 118
+ Y ++ L ++ Y + I+F +TK+ DE+ L E +H
Sbjct: 216 STVSQYYFEIKQNNRFESLCRILD-YDEPSSAIIFCKTKKGVDELVEGLQVRGYNVEGMH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q R TL F++G LVATDVAARG+DI ++ + +YELP D +++VHR GRT
Sbjct: 275 GDMTQDHRMNTLRKFKEGNLEFLVATDVAARGIDIESITHVFNYELPQDSDSYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVH 237
GRA ++GTA + T+ + R ++ +E+D + P ++D+ S + +V + +
Sbjct: 335 GRANRQGTAYTLVTAREYRFLKQIEKDTKGTIKRKELPTIDDIFLSKYKSIVGRVKETLS 394
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQL---SGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ + F P L EE +A+AL + S + S+ ++E G+V + L
Sbjct: 395 QDDYKRFVPLVTELDEEYSLVDVASALMYMVYTKEISYEYTENSISSNEGGFVRVFL--- 451
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
+ + ++ + ++ F+ + DEIG I I+
Sbjct: 452 NVGRKDKLNPKKLITFIKESARIRGDEIGDIDIL 485
>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
spizizenii str. W23]
gi|407956155|dbj|BAM49395.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7613]
gi|407963426|dbj|BAM56665.1| ATP-dependent RNA helicase [Bacillus subtilis BEST7003]
Length = 494
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P +
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDN 429
>gi|375011356|ref|YP_004988344.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347280|gb|AEV31699.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 610
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 138/225 (61%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF++D++ IL P ++ + LFSATMP+ +K++ + Y+ NP + + NQ +
Sbjct: 184 MLNMGFKDDLDYILAQAPEEKITWLFSATMPAEIKRIVKNYMVNPAEVKV--NQGNIVNT 241
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ A+ K L L+ + +VFT+TKRDA +V+ L S A+E LHG
Sbjct: 242 NIEHQYAVLKASDKTEALRRLLD-FDPAMYGVVFTRTKRDAQKVAEDLVESGYAAEPLHG 300
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+ + FR G +L+ATDVAARG+D+ N+ ++H+ LP+DPE + HRSGRT
Sbjct: 301 DLSQAQRDAVMRRFRAGTLQMLIATDVAARGIDVDNLTHVVHFALPDDPEYYTHRSGRTA 360
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAGK+G ++ + T R V+ LE +G KFE P + ++ ++
Sbjct: 361 RAGKKGVSLSLITKGDMRRVKYLESKLGIKFEKALIPEIAEIAKN 405
>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus champanellensis
18P13]
Length = 555
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 128/393 (32%), Positives = 191/393 (48%), Gaps = 43/393 (10%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL +P +RQ++LFSATMP + +++++ +P I + + +
Sbjct: 139 MLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAITKQFQKDPTVIKIAAKH--RTVD 196
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y T K L L+ Y + +VF TKR DE++ AL I + LHG
Sbjct: 197 TIEQYYYETAMGRKTDALRLLLLAY-EPKSAMVFCNTKRTVDELTEALCDKGIQAAGLHG 255
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR + +N F+ G+ VLVATDVAARG+D+ +DL+ +Y+LP D E ++HR GRTG
Sbjct: 256 DMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLVFNYDLPQDNEYYIHRIGRTG 315
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVG--CKFEFVSP--PVVEDVLESSAEQV---VAT 232
RAGK GTA+ + S RR V +L RD+ K E + P D+ +Q+ VA
Sbjct: 316 RAGKSGTALTLV--SGRRQVFAL-RDIAKYTKAEIIQKALPTRADLAAKKTQQLHDAVAQ 372
Query: 233 LNGVHPES----------VEFFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI 280
P S E +T AQ L+EEK L+A+L + F P R
Sbjct: 373 ACAEQPSSRAEELLNRLTEEGYTAQQIAQVLLEEK----LSASLQSIPEFDAPQPIRREG 428
Query: 281 NHEQGWVT-----LQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCI 335
+ VT + + R + F ++G L D + + GKI I D +
Sbjct: 429 KRGRSAVTTAKVDINIGRQQRIAPNF-----ILGALVDATGLSGKDFGKIDIF-DQHTTV 482
Query: 336 DT--VILLYFYASVRLGLFNTKSVIWLTYRFRE 366
+ + + S+ G N V Y +E
Sbjct: 483 EVPEAEMDFVIDSLNAGKINGHKVTVKRYEGKE 515
>gi|410623815|ref|ZP_11334625.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156511|dbj|GAC29999.1| ATP-dependent RNA helicase DeaD [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 581
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 161/277 (58%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVELIL + P +RQ+ LFSATMP +KK++++YL NP +I + A
Sbjct: 162 MLRMGFIDDVELILSHAPAERQTALFSATMPDVIKKITKRYLKNPEHIKIESTVSS--AS 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK K L+ ++ V G I+F +TK E++ L + E L+G
Sbjct: 220 MIKQRYCQVAGHHKLEALTRIMEVEKFDG-MIIFVRTKTATVELADKLMARGYVVEPLNG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q+ RERT+ ++G +LVATDV ARGLD+ V +++Y++P D E++VHR GRTG
Sbjct: 279 DIPQNARERTVEKLKRGDIDILVATDVVARGLDVERVSHVLNYDIPYDTESYVHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAG+ G AIL + ++R + ++E+ + E + P + + ES E+ + + ++
Sbjct: 339 RAGRTGDAILFISHREKRLLFAIEKATKQRIENMEIPSISQLNESRLERFKQSIIEAMND 398
Query: 239 ESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
ES+E + P + ++E E D + AALA+++ + P
Sbjct: 399 ESIESYIPIVESIMEETEASPDLIMAALAKVAQGNEP 435
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 27/354 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE LP KRQ + FSATMPS +++LS++YL P I + + E A+
Sbjct: 207 MLRMGFIDDIEWILEQLPAKRQMIFFSATMPSEIRRLSKQYLHEPAEITIKAQKKE--AQ 264
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I + K L ++ A G I+F +TK +S +L ++ + A L+G
Sbjct: 265 LIRQRYIVIQNSFKLEALKRVLETTADEG-VIIFARTKAITLRLSESLEALNHNVAVLNG 323
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT+ RQG +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 324 DVPQTLRERTIERLRQGGIDILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTG 383
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE-------DVLESSAEQVVAT 232
RAG+ G AIL + +R + +LER VG E + P E + L+++ Q V T
Sbjct: 384 RAGRTGEAILFVSPRERSFINNLERAVGQSIEKMEIPNNEIINQHRINKLKNNLSQAVET 443
Query: 233 LNGVHPESVEFFTPTAQRLIEEKG------TDALAAALAQLSGFSRPPSSRSLINHEQGW 286
P E T + LI+E G T +A A L+ S P I ++ W
Sbjct: 444 -----PRQHEEETEILKCLIKEVGEELEIETKDIAVAALNLAIGSLPLK----IQEDESW 494
Query: 287 VTLQ-LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVI 339
++ Q ++R + R + +P E K+ + DRV ++
Sbjct: 495 LSQQNISRKNYDRRDDRGRSRRKNSFNSSHPDKDKERYKLDVGHRDRVKPGNIV 548
>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 619
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 159/280 (56%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE+ P Q+ LFSATMP ++K++ K+L+NP + ++
Sbjct: 163 MLRMGFIDDVEWILEHTPDGHQTALFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTI 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K + +S K L+ ++ + G I+F +TK E++ LT+ A EAL+G
Sbjct: 223 SQKYWQVS--GIHKLDALTRILEMNEHDG-MIIFVRTKAATVELAEKLTARGHACEALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DISQ+ RERT++ ++G+ +LVATDV ARGLD+ V +++Y++P D E++VHR GRTG
Sbjct: 280 DISQNLRERTVDRIKKGQIDILVATDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNG 235
RAG+ GTAIL +RR ++ +ER E + P D+ E +++ T++
Sbjct: 340 RAGRSGTAILFVGHRERRMLQQIERATRQAIERMQLPTASDINEQRVARFKQRITDTIDN 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTD--ALAAALAQLSGFSRP 273
E ++FF A +E D L AALA ++ P
Sbjct: 400 ---EDLDFFIELAASYQKENDVDPVKLGAALAHMAQGKTP 436
>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 539
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 159/277 (57%), Gaps = 17/277 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL + RQ++LFSATMP +KKLSR+Y+ P + + N+ E A
Sbjct: 155 MLDMGFVDDIESILREVKGARQTLLFSATMPPAIKKLSRRYMTTPKTVTI--NKGEVTAP 212
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R I S+ + + I+F +TK+ E++ AL + +
Sbjct: 213 SIDQLYYKVLERNKIDSLCRIIDSEEVDL------GILFCRTKKGVAELTEALQARGYLA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD++Q QR+ + FR L+ATDVAARG+D+ NV +I+Y++P DPE++VHR
Sbjct: 267 DGLHGDLTQSQRDAVMKKFRDSSIEFLIATDVAARGIDVDNVTHVINYDIPQDPESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE---SSAEQVVA 231
GRTGRAG++G A+ + T + + +RS+E+++ P +EDV+E SS +++V
Sbjct: 327 IGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKMAIPSQDVPTIEDVVEKQQSSWKKLVH 386
Query: 232 TLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
+ E F P Q ++ + + + AAL +++
Sbjct: 387 DTIDTGGKEFELFKPLVQEVLADHSPEDVVAALLKMN 423
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 148/234 (63%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMPS +++LS++YL +P I + Q + +E
Sbjct: 229 MLNMGFQEDVERILEDTPSDKQVALFSATMPSGIRRLSKQYLSDPREITVKATQ--RTSE 286
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L+ ++ + + I+F +TK + +E++ L + + A++G
Sbjct: 287 NIEQDYLLVSHRDKLDALTRILEI-TEFEAMIMFVRTKNETEELAERLRARGFNAAAING 345
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q+ RERT++ + G+ +LVATDVAARGLD+ + + +Y++P+D E++VHR GRTG
Sbjct: 346 DIPQNLRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTG 405
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG++G AIL T +RR ++S+ER + + P V+ V E+ E+ +L
Sbjct: 406 RAGRKGRAILFVTPRERRLLKSIERATKSRLNEIELPTVDAVNEARKEKFRDSL 459
>gi|405980982|ref|ZP_11039311.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
gi|404393001|gb|EJZ88058.1| hypothetical protein HMPREF9240_00317 [Actinomyces neuii BVS029A5]
Length = 576
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 154/258 (59%), Gaps = 5/258 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I ++P + LFSATMP +KK+++ +L++P+ I + Q ++
Sbjct: 157 MLRMGFAEDVETIAGSVPDDSVTALFSATMPPAIKKVAQTHLNDPVEIS-IARQSTTVST 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
+ YA+ K L+ +++ G TIVF +T+ DA+EV+ +T+ + A+ G
Sbjct: 216 VHQTYAV-VPFKFKNVALARVLSTM-DSGATIVFVRTRLDAEEVANDMTARGFRTAAISG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +RER + R G VLVATDVAARGLD+ ++L++++++P E +VHR GRTG
Sbjct: 274 DVAQAERERIVERLRNGTLDVLVATDVAARGLDVERIELVVNFDVPRQDEAYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+EGTA+ FT +R +R +E+ G K E V P + V A Q++ L +
Sbjct: 334 RAGREGTALSFFTPRERGKLRQIEKLTGTKMEAVRVPSPQQVRTHKAHQILDKLPERIAS 393
Query: 239 ESVEFFTPTAQRLIEEKG 256
+ +E + + L EE+G
Sbjct: 394 KGLELYFGLIEELAEEQG 411
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 153/269 (56%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL +P RQ+MLFSATMP ++K++ ++++NP + + E
Sbjct: 156 MLNMGFIDDIEAILSTVPKDRQTMLFSATMPDPIRKIAERFMNNPELVRV--KAKEMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y I K +LS L+ V + IVF +TKR DE++ ALT +E +HG
Sbjct: 214 SIEQYYIKVQEREKFDVLSRLLDVQSPD-LAIVFGRTKRRVDELANALTLRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKDGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A+ T + ++++E+ + + PP ++ E + + E
Sbjct: 333 RAGREGMAMTFVTPREMGYLKTVEQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKE 392
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQL 267
+++ + A+ L+ E + AA +L
Sbjct: 393 GNIDEYMSVAKELLAEYDPAEVTAAALKL 421
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 148/234 (63%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMPS +++LS++YL +P I + Q + +E
Sbjct: 229 MLNMGFQEDVERILEDTPSDKQVALFSATMPSGIRRLSKQYLSDPREITVKATQ--RTSE 286
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L+ ++ + + I+F +TK + +E++ L + + A++G
Sbjct: 287 NIEQDYLLVSHRDKLDALTRILEI-TEFEAMIMFVRTKNETEELAERLRARGFNAAAING 345
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q+ RERT++ + G+ +LVATDVAARGLD+ + + +Y++P+D E++VHR GRTG
Sbjct: 346 DIPQNLRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTG 405
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG++G AIL T +RR ++S+ER + + P V+ V E+ E+ +L
Sbjct: 406 RAGRKGRAILFVTPRERRLLKSIERATKSRLNEIELPTVDAVNEARKEKFRDSL 459
>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
gi|384174130|ref|YP_005555515.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|428277910|ref|YP_005559645.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|452916520|ref|ZP_21965143.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
gi|134039178|sp|P96614.2|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
BEST195]
gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
gi|349593354|gb|AEP89541.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|443906300|emb|CAB12265.2| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|452114660|gb|EME05059.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus subtilis MB73/2]
Length = 494
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 159/276 (57%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
++ F+ A L+E+ DA+ A + ++ P
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEP 427
>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357190|ref|ZP_12959892.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689580|gb|EHI54116.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 613
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I+E P RQ LFSATMP ++++++K+L P I +V A
Sbjct: 163 MLRMGFIDDVDWIMEQCPSTRQVALFSATMPDQIRRVAQKHLKQPKEIKIVSKT--STAP 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V +VF +TK A+E++ L + A EALHG
Sbjct: 221 TIRQRYWQVTGLHKLDAMTRLLEVEPYEA-VLVFVRTKNAAEELAGKLAARGHACEALHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ + E++ T+ G
Sbjct: 340 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMG 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 400 ---EELELYLNLVNELIEEDSAD 419
>gi|394994548|ref|ZP_10387262.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
gi|393804648|gb|EJD66053.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. 916]
Length = 494
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAPAIKMATKEPDS 429
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 156/276 (56%), Gaps = 10/276 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE P RQ+ L+SATMP + +L+RKYL +P + + +++
Sbjct: 156 MLNMGFVDDIEYILERAPKDRQTALYSATMPDEIARLARKYLRSPQMVTI--EREQLTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ A K +L+ ++ + I+F +TK DE+ L + +E LHG
Sbjct: 214 QIRQVYYEIGARDKFEVLTRILDLEMPT-SAIIFCRTKAMVDELGEKLLARGYGAELLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ R+R + FR+ + +LVATDVAARGLDI +V +I+Y++P DPE +VHR GRTG
Sbjct: 273 DLSQAMRDRVMKRFREEQVEILVATDVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ G A+ + T +RR +R++ER G + + P + DV+ E L +
Sbjct: 333 RAGRSGVAVTLVTPRERRQLRTIERMTGAPIQRLRLPTIADVVARRREAFKDNLRELIEQ 392
Query: 237 HPE--SVEFFTPTAQRLIEE-KGTDALAAALAQLSG 269
H E +E + A+ L E+ TD AAA + G
Sbjct: 393 HNEQGGLEQYLVLAEELAEQYSPTDLAAAAFKMMLG 428
>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
subtilis str. 168]
gi|402774703|ref|YP_006628647.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430757089|ref|YP_007210799.1| hypothetical protein A7A1_1597 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
gi|402479888|gb|AFQ56397.1| ATP-dependent RNA helicase [Bacillus subtilis QB928]
gi|430021609|gb|AGA22215.1| Hypothetical protein YdbR [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 511
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 159/276 (57%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 174 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 232 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 291 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 351 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 410
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
++ F+ A L+E+ DA+ A + ++ P
Sbjct: 411 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEP 444
>gi|420143621|ref|ZP_14651118.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
gi|391856492|gb|EIT67032.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
Length = 539
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 153/272 (56%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ P +RQ++LFSATMP+ +KK+ K++ NP +I + E A+
Sbjct: 155 MLNMGFLEDIEFIIGKTPAERQTLLFSATMPNDIKKIGVKFMKNPEHIKVAAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y I T K +L+ L+ V + IVF +TKR DE++ L +E +HG
Sbjct: 213 RIDQYFIKTKEFEKFDVLTRLLDV-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R R L F+ G +LVATDVAARGLDI V + +Y++ D E++VHR GRTG
Sbjct: 272 DLDQNKRLRVLRDFKGGHLDILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----N 234
RAGK G ++ + ++ +R++E+ + + + PP ED ++S + + +
Sbjct: 332 RAGKSGRSVTFVSYNEMGYLRAIEKLTKKEMKGMRPPTKEDAYQASLSVAMDEIKRDLQD 391
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
G + F A+RL+ E L A L Q
Sbjct: 392 GSLKGKLTKFDADAERLLAEYDVKELVAMLIQ 423
>gi|345860075|ref|ZP_08812402.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
gi|344326819|gb|EGW38270.1| DEAD-box ATP-dependent RNA helicase cshA domain protein
[Desulfosporosinus sp. OT]
Length = 536
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 142/231 (61%), Gaps = 5/231 (2%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF ED+E IL+++P + RQ MLFSATMP ++KL++ Y++NP + + ++DE
Sbjct: 161 MLDMGFIEDIEAILKDVPSEGRQIMLFSATMPPAIRKLAQTYMNNPRAVTV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I + K L +I + G+ I+F +TKR DE+ AL + ++ LH
Sbjct: 219 PLIDQVFYEARESIKVDALCRIIDI-EDIGQGIIFCRTKRGVDELVAALEARGYFADGLH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DP ++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKRFRDGKSELLVATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GR G++G AI + + + R +R +E + + P + D+ E AE +
Sbjct: 338 GRVGRKGQAITLISPKEYRQLRLIENLIKTRIRRQELPSLADISERQAENL 388
>gi|443633956|ref|ZP_21118132.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443346152|gb|ELS60213.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 474
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 160/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 137 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 195 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 314 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P +
Sbjct: 374 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDN 409
>gi|427383474|ref|ZP_18880194.1| hypothetical protein HMPREF9447_01227 [Bacteroides oleiciplenus YIT
12058]
gi|425728658|gb|EKU91513.1| hypothetical protein HMPREF9447_01227 [Bacteroides oleiciplenus YIT
12058]
Length = 484
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 135/211 (63%), Gaps = 4/211 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DV+ +L LPPK+Q++ FSATMP + +L++ L NP +++ + E
Sbjct: 163 MLDMGFIHDVKRLLPKLPPKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASS--VVE 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I K+ +L+ L+ A G + +VF++TK AD ++ L+ IA E++HG
Sbjct: 221 IISQSVYRVEKPQKKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGIACESIHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ+ R+R L+ F++G+ V++ATD+AARG+DI +DL+++++LP+ PET+VHR GRTG
Sbjct: 280 DKSQNARQRALSNFKEGRSNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RAG EG AI +S + +R +E+ G K
Sbjct: 340 RAGCEGRAIAFCSSEEAPMLREIEKLTGIKL 370
>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399989304|ref|YP_006569654.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|441213695|ref|ZP_20975941.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium smegmatis str. MC2 155]
gi|399233866|gb|AFP41359.1| Cold-shock DEAD-box RNA helicase [Mycobacterium smegmatis str. MC2
155]
gi|440625659|gb|ELQ87505.1| hypothetical protein D806_5114 [Mycobacterium smegmatis MKD8]
Length = 581
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 137/222 (61%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E+VE IL + P +Q LFSATMP+ ++K++ KYL +P+ + + AE
Sbjct: 176 MLTMGFAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKT--ATAE 233
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 234 NISQRFIQVAGPRKMDALTRILEV-EEGDAMIVFVRTKQATEEVADRLKARGFAAAAING 292
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G +L+ATDVAARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 293 DINQAQRERTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTG 352
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L T +R ++S+E+ K P VEDV
Sbjct: 353 RAGRSGHAVLFVTPRERHLLKSIEKATRSKLIEAELPSVEDV 394
>gi|407984605|ref|ZP_11165216.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
gi|407373827|gb|EKF22832.1| DEAD/DEAH box helicase family protein [Mycobacterium hassiacum DSM
44199]
Length = 560
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 140/231 (60%), Gaps = 7/231 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL P +Q LFSATMP ++K++RKYL +P+ + + AE
Sbjct: 168 MLQMGFAEDVERILAETPEYKQVALFSATMPPAIRKITRKYLHDPVEVTV--KAKTATAE 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +E++ L + A+ A++G
Sbjct: 226 NISQRYIEVAGPRKLDALTRVLEVEPFEA-MIVFVRTKQATEELAERLRARGFAAAAING 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ + G +L+ATDVAARGLD+ + +++Y++PND E++VHR GRTG
Sbjct: 285 DIAQAQRERTIAALKSGAIDILIATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
RAG+ GTA+L T +R ++++E+ K P VEDV +A++VV
Sbjct: 345 RAGRSGTALLFVTPRERHLLKAIEKATRSKLVAAELPTVEDV---NAQRVV 392
>gi|418034442|ref|ZP_12672914.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351468695|gb|EHA28904.1| ATP-dependent RNA helicase (cold shock) [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 480
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 159/276 (57%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 143 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 200
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 201 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 259
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 260 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 319
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 320 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 379
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
++ F+ A L+E+ DA+ A + ++ P
Sbjct: 380 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEP 413
>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
Length = 601
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 139/225 (61%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE LP +RQ +LFSATMP+ +++LS++YL P I + +K A
Sbjct: 203 MLRMGFIDDVEWILEQLPQERQVVLFSATMPNEIRRLSKRYLREPAEITI--KTKDKEAR 260
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ + K L+ ++ G I+F +TK V+ +L + A L+G
Sbjct: 261 RIRHRCITMQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNG 319
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 320 DVPQNQRERTVERLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTG 379
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR V +LER VG E + P ++ +S
Sbjct: 380 RAGRSGDAILFITPRERRFVGNLERAVGQAIEPMDIPSNAEINQS 424
>gi|449093157|ref|YP_007425648.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
gi|449027072|gb|AGE62311.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis XF-1]
Length = 474
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 159/276 (57%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 137 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 195 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T ++ +R++E+ K + + P +++ LE + V L +
Sbjct: 314 RAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISE 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
++ F+ A L+E+ DA+ A + ++ P
Sbjct: 374 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEP 407
>gi|433649450|ref|YP_007294452.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433299227|gb|AGB25047.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 566
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 157/273 (57%), Gaps = 15/273 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP ++K+++KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPGIRKITKKYLHDPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ L+ V IVF +TK+ +EV+ L + ++ A++G
Sbjct: 225 NISQRYIQVAGPRKMDALTRLLEVEPFEA-MIVFVRTKQATEEVAEKLRARGFSAAAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+N + G +L+ATDVAARGLD+ + +++Y++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTINSLKNGSLDILIATDVAARGLDVERISHVLNYDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ GTA+L T +R + S+ER K P V+DV E+ ++ +
Sbjct: 344 RAGRSGTALLFVTPRERHLLNSIERVTRQKLVESQLPSVDDVNAQRVEKFRDSITTALSA 403
Query: 239 ESVEFFTPTAQRLIE--EKGTDA----LAAALA 265
++ F ++LIE E+ D +AAALA
Sbjct: 404 PGIDLF----RKLIEGYERDNDVPMADIAAALA 432
>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
17393]
gi|189435894|gb|EDV04879.1| DEAD/DEAH box helicase [Bacteroides intestinalis DSM 17393]
Length = 482
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 135/211 (63%), Gaps = 4/211 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DV+ +L LPPK+Q++ FSATMP + +L++ L NP +++ + E
Sbjct: 164 MLDMGFIHDVKRLLPKLPPKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASS--VVE 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I K+ +L+ L+ A G + +VF++TK AD ++ L+ IA E++HG
Sbjct: 222 IISQSVYRVEKPQKKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGIACESIHG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ+ R+R L+ F++G+ V++ATD+AARG+DI +DL+++++LP+ PET+VHR GRTG
Sbjct: 281 DKSQNARQRALSNFKEGRSNVIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RAG EG AI +S + +R +E+ G K
Sbjct: 341 RAGCEGRAIAFCSSEEAPMLREIEKLTGIKL 371
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 151/267 (56%), Gaps = 7/267 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ I+ P RQ+MLFSATMPS +K L+ ++L +P ++ + Q A+
Sbjct: 156 MLNMGFIEDIRAIIRATPDSRQTMLFSATMPSEIKALAEEFLRHPQHVQIEAQQ--MTAD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS--LALTSIIASEALH 118
I Y + K IL+ I ++ + I+F +TK+ DEV LAL A E +H
Sbjct: 214 LIDQYFTKCSDGEKFDILTRFIDIH-NPKQAIIFCRTKKRVDEVGRGLALRGYNA-EMIH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GDI+Q +R + + G +LVATDVAARGLDI V + +Y++P DPE++VHR GRT
Sbjct: 272 GDITQQKRTSVIKELKDGVLEILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVH 237
GRAGKEG +I T ++ ++++E+ + + PP ++ +Q++ +N +
Sbjct: 332 GRAGKEGMSITFVTHNEMAYLKTIEQLTRIQMMPMRPPTSKEAQHGQIQQLIDRMNLTLQ 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAAL 264
E + TA+ L+E + L AL
Sbjct: 392 SEEADALRNTAKMLLEHYEVNDLVTAL 418
>gi|334144539|ref|YP_004537695.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333965450|gb|AEG32216.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 599
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 159/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE +LE P RQ LFSATMP V K++ K+L+NP ++++ Q A
Sbjct: 163 MLRMGFIDDVEWVLEQTPQDRQIALFSATMPKEVHKIASKHLNNP--VEVIIKQKTGTAS 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ ++ G I+F +TK E++ L + A+ AL+G
Sbjct: 221 TISQSYWLVSGLHKLDALTRILEATEFDG-MIIFVRTKTATIELAEKLEARGYAAAALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+ RER ++ ++GK +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIAQNHRERIVDQLKKGKIDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL +RR ++ +ER K + ++ P +D+ + E+ A + + +
Sbjct: 340 RAGRSGNAILFVAPRERRLLQQIERATNKKIDMLTLPSTQDINDQRVEKFKARITDALEQ 399
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
E +EF+ + L + AL AAALA+L+ P
Sbjct: 400 EGLEFYQQMIEDLQQSSNVPALEIAAALAKLAQGDAP 436
>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
DSM 14838]
Length = 478
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DV+ +L LPPK+Q++ FSATMP + +L++ L NP +++ + E
Sbjct: 164 MLDMGFIHDVKRLLPKLPPKKQTLFFSATMPDSIDRLAKSLLRNPARVEVTPASS--VVE 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I K+ +L+ L+ A G + +VF++TK AD ++ L+ I E++HG
Sbjct: 222 IISQSVYRVEKPQKKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGITCESIHG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ+ R+R L+ F++G+ V++ATD+AARG+DI +DL+++Y+LP+ PET+VHR GRTG
Sbjct: 281 DKSQNSRQRALSNFKEGRSNVIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS---PPVVE 219
RAG EG AI + + +R +E+ G K E PP+ E
Sbjct: 341 RAGCEGRAIAFCSGEEVPMLREIEKLTGIKLEQRKHDLPPLEE 383
>gi|336394535|ref|ZP_08575934.1| putative ATP-dependent RNA helicase [Lactobacillus farciminis KCTC
3681]
Length = 507
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 151/264 (57%), Gaps = 6/264 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL N+P K Q++LFSATMP + K++ K+++ P + + E A+
Sbjct: 155 MLDMGFVEDIESILSNVPNKHQTLLFSATMPKPIMKIADKFMNEPEVVKI--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + K +++ L V A ++F +TKR DE++ L + +E +HG
Sbjct: 213 KIEQYFVKARDYEKFDLMTRLFDVQAPE-LALIFGRTKRRVDELTRGLQARGYNAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ GK LVATDVAARGLDI V + +Y++P DP+++VHR GRTG
Sbjct: 272 DLSQDKRTSVLRKFKAGKLDFLVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--H 237
RAG G ++ T ++ +R++E + E ++PP ++VL+ E V + H
Sbjct: 332 RAGHSGVSVTFVTPNEMGYLRTIENLTKKRMEPLAPPTDKEVLKGQLESVKQDIKDTLEH 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALA 261
+ ++ F Q L+ E + +A
Sbjct: 392 DKHLDRFDSAVQELLAEYSPEDIA 415
>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
Length = 564
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 162/270 (60%), Gaps = 12/270 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA- 59
ML +GF+E +E IL+ +P +RQ++LFSAT+P +K+++ KY N ++ +KLA
Sbjct: 158 MLKMGFQEALETILKQIPEERQTVLFSATLPPSIKQIASKYQKN---TKILQVPVKKLAV 214
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ Y K +L L+ + + TI+F TK+D DE++ L ++A+H
Sbjct: 215 NAIEQYYFLVKEFDKNKLLVRLLDL-KRDYSTILFANTKKDVDEITSFLQDKGFLADAVH 273
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QR+ +N FR+GK +L+ATDVAARG+DI ++ ++++Y+LP++ E +VHR GRT
Sbjct: 274 GDLKQNQRQYVMNNFRKGKIKILIATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRT 333
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED----VLESSAEQVVATLN 234
GRAGK+G A + + ++ LE + K +F+ P VE+ +LE+ ++V+ +
Sbjct: 334 GRAGKKGLAYSFISPRKFSQLKKLEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIE 393
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
E+ P ++L+++ ++ + L
Sbjct: 394 KNSQENAN--NPMIEKLLQKFSSEQIIQGL 421
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 10/220 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E IL P +RQ+MLFSATMPS + LSRKYL P +I +D+ L
Sbjct: 175 MLDLGFLPDIERILAKTPDQRQTMLFSATMPSEIVALSRKYLRRPTHIR---AEDDPLDT 231
Query: 61 G---IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
G + + T K +L+ L+ +G T+VF QTKR+ VS L A+ A
Sbjct: 232 GSGQVTQHVFRTHPLDKLEMLARLLQARNRG-LTMVFCQTKRECHHVSTELCRRGFAAAA 290
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
+HGD+ Q QRER L FR GK VLVATDVAARG+D+ +V +++YE P+D +T+ HR G
Sbjct: 291 VHGDLGQGQRERALRAFRNGKVDVLVATDVAARGIDVDDVTHVVNYECPDDEKTYTHRIG 350
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RTGRAG+ GTA+ + + + R +G F PP
Sbjct: 351 RTGRAGRSGTAVTFIDWQELLRWKLINRALG--LPFADPP 388
>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
Length = 598
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 166/304 (54%), Gaps = 21/304 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE +L LP KRQ +LFSATMPS ++++S +YL++P I + + +
Sbjct: 186 MLRMGFIDDVEWVLSQLPEKRQVVLFSATMPSEIRRISHQYLNSPAEITIKTKGSD--SS 243
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ K LS ++ K G I+F +TK V+ AL + A L+G
Sbjct: 244 RIQQRFITVNGPMKLEALSRVLEAETKEG-VIIFARTKAITVTVAEALEAKGYGVAVLNG 302
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRERT+ + G VLVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 303 DVAQSQRERTIERLKNGTVDVLVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTG 362
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP----VVEDVLESSAEQVVATLNG 235
RAG+ G AIL T +RR + LER VG E + P + + L+ E++ T+ G
Sbjct: 363 RAGRTGNAILFVTPRERRFITGLERAVGRPIEPMEIPTNASINQSRLDRLRERLSETVKG 422
Query: 236 VHPESVEFFTPTAQRLIE---------EKGTDALAAALAQLSGFSRPPSSRSLINHEQGW 286
++ E + L E E + LA A Q++ +P L++ ++ W
Sbjct: 423 LNSEETSNLSEQQALLSEIIKRVGQESEVAPEQLALAALQMAVGDQP----LLVHDDENW 478
Query: 287 VTLQ 290
+ Q
Sbjct: 479 IRQQ 482
>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 748
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 159/259 (61%), Gaps = 6/259 (2%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF ED+E+IL + K Q++LFSAT+P WV +SR++L + + +DLVG++ +K
Sbjct: 292 MLNMGFVEDIEMILNHAKDNEKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQK 351
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII--AS 114
+ + ++ + + ++ DLI G G+ IVF TKRD E+ AL + +
Sbjct: 352 ASAAVTHMLLNCQWSERTELVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGA 411
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ALHGD++Q QRE L GFR KF LVATDVAARGLDI V+L++ E P +PET++HR
Sbjct: 412 KALHGDVNQAQREVVLAGFRANKFQTLVATDVAARGLDISGVELVVQCEPPKEPETYIHR 471
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
SGRTGR G G + + T + ++ER G KF+ ++PP ++ ++A+ V+A +
Sbjct: 472 SGRTGRGGATGECVTLCTPRNEWAIPNIERKGGFKFQRIAPPQPAEMAAAAAKIVIAQVR 531
Query: 235 GVHPESVEFFTPTAQRLIE 253
V + + F A+ L+E
Sbjct: 532 AVAKGAAKMFMDAAKELLE 550
>gi|433653854|ref|YP_007297562.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292043|gb|AGB17865.1| DNA/RNA helicase, superfamily II [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 514
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 175/337 (51%), Gaps = 27/337 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLA 59
ML +GF +D++ I+ + +RQ+M+FSATMP +K L++KY+ + I +V +
Sbjct: 155 MLDMGFIDDIKEIINHTNEERQTMMFSATMPDEIKSLAKKYMKSDAKFISIV--KKTMTV 212
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ + + L ++ V + TI+F +TK++ DE++ + S E +H
Sbjct: 213 STVQHFYYEVKNQERFESLCKILDV-DEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QR TL F++G LVATDVAARG+DI NV +I+Y LP D E++VHR GRT
Sbjct: 272 GDMSQNQRINTLRKFKEGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VH 237
GRA + G A + TS + ++ +E+ CK + P V+D+LE +++A + +
Sbjct: 332 GRANRSGVAYTLVTSREYPALKRIEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLE 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQL-------SGFSRPPSSRSLINHEQGWVTLQ 290
+ F P A L EE +AAAL + P R IN
Sbjct: 392 KNDYKRFVPLAMELDEEYNLVDVAAALMDMYYGKELYYNDDEPKYVRLFIN--------- 442
Query: 291 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
L R ++ R+++ L D+ + ++IG I I
Sbjct: 443 LGRKDKLNK-----RTLLKLLMDIGDISKEDIGNIDI 474
>gi|423222165|ref|ZP_17208635.1| hypothetical protein HMPREF1062_00821 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392643389|gb|EIY37140.1| hypothetical protein HMPREF1062_00821 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 477
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 134/212 (63%), Gaps = 4/212 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DV+ +L LPPK+Q++ FSATMP + +L++ L NP +++ + E
Sbjct: 163 MLDMGFIHDVKRLLPKLPPKKQTLFFSATMPDSIDRLAKSLLRNPARVEVTPASS--VVE 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I K+ +L+ L+ A G + +VF++TK AD ++ L+ I E++HG
Sbjct: 221 IISQSVYRVEKPQKKELLAQLLLGEA-GHQVLVFSRTKHGADNIARYLSRRGITCESIHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ+ R+R L+ F++G+ V++ATD+AARG+DI +DL+++Y+LP+ PET+VHR GRTG
Sbjct: 280 DKSQNSRQRALSNFKEGRSNVIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
RAG EG AI + + +R +E+ G K E
Sbjct: 340 RAGCEGRAIAFCSGEEVPMLREIEKLTGIKLE 371
>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 397
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 136/215 (63%), Gaps = 3/215 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ LP RQ++LFSATMP + +L++++L+ V DE E
Sbjct: 159 MLEMGFIEDIEDIMSYLPEDRQNLLFSATMPKEILELAQEFLNEDYQTIKV-KPDEITVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK +K L ++++ + KTI+FTQTK +AD++S L+ + A+HG
Sbjct: 218 KIKQIIYRVDPKNKFNKLIEVLS-QNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +RE L+ FR GK +LVATDVAARGLDI V+L+I+Y LP + E++VHR GRTG
Sbjct: 277 DFSQKKRETVLHNFRTGKLKILVATDVAARGLDIKGVELVINYGLPKNAESYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214
RAGKEGTAI + T S+ + ++ + + E ++
Sbjct: 337 RAGKEGTAISIPTPSEDKYLQQILQKTKANIEVIN 371
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 156/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ KYL P+++ + E
Sbjct: 161 MLKMGFIDDIEWILEHTPKQRQLALFSATMPEQIKRVANKYLSEPVHVKIAATT--TTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 TIEQRFVQVSQHNKLEALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++GK +++ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAVDQLKRGKLDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238
RAG+ G AIL T + R +R++ER + + P E V E ++ + V
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATKSRISPMDIPSPETVTERRLSRLGEQIGEVIAK 397
Query: 239 ESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+S++F +L + E TD LAAAL Q RP
Sbjct: 398 DSLDFMKGAVAKLCQELEVDTDVLAAALLQQVQKDRP 434
>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
Length = 564
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK++ KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ L+ V +G IVF +TK+ +EV+ L S A+ A++G
Sbjct: 225 NITQRYFLVSYPRKMDALTRLLEV-EQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTISQLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAG+ GTA+L T +R + ++ER K P VEDV E
Sbjct: 344 RAGRSGTALLFVTPRERHLLGAIERVTRQKLVESELPSVEDVNE 387
>gi|418051651|ref|ZP_12689735.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353184343|gb|EHB49870.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 565
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK++ KYL +P+ + + + AE
Sbjct: 163 MLQMGFAEDVERILADTPEYKQVALFSATMPPGIKKITTKYLHDPVEVTV--KSKTQTAE 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ L+ V +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 221 NITQRYFQVSYPRKIDALTRLLEV-EEGDAMIVFVRTKQATEEVAEKLRARGFAAAAING 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 280 DIPQAVRERTIASLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ GTA L T +R + S+ER K P VEDV E+ ++ + ++
Sbjct: 340 RAGRSGTAFLFVTPRERHLLNSIERVTRQKLVESQLPSVEDVNAQRVEKFRDSITDALNA 399
Query: 239 ESVEFFTPTAQRLIEE 254
E F +RLIE+
Sbjct: 400 PGFEMF----RRLIED 411
>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 472
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 157/278 (56%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL +P +RQ++LFSATMP+ +++++ +++ P + + E
Sbjct: 137 MLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMAERFMKEPQIVRVKAK--EMTVS 194
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y I +K +L+ L+ + + IVF +TKR DE++ AL +E +HG
Sbjct: 195 SIEQYYIEVHEKNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYMAEGIHG 253
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 254 DLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 313
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A+ ++ + +ER K E + P +++ LE + V+ + +
Sbjct: 314 RAGKTGVAMTFINPREKSYLHVVERTTKRKMERMDAPTLDEALEGQQKAVMEKIMQTIEE 373
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++E + A L+ +K DA A L ++ P +
Sbjct: 374 NNLESYKEAADELLAQK--DASTVVQAVLKMLTKEPDT 409
>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
Length = 603
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 4/237 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL+ LP +RQ +LFSATMP+ +++LS++YL P I + EK A
Sbjct: 198 MLRMGFIDDVEWILDQLPEERQVVLFSATMPAEIRRLSKRYLREPAEITI--KTQEKEAR 255
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ + K L+ ++ G I+F +TK VS L + A L+G
Sbjct: 256 RIRQRCITLQNSHKLEALNRVLEAVTGEG-VIIFARTKAITLTVSENLEATGHDVAVLNG 314
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT+ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 315 DVPQNQRERTVERLRKGTVNILVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTG 374
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RAG+ G AIL T +RR V +LER G E + P ++ ++ + + L V
Sbjct: 375 RAGRSGEAILFVTPRERRFVNNLERATGQPIEPMQIPSNAEINQARLDNLRQKLTAV 431
>gi|421498106|ref|ZP_15945244.1| deaD [Aeromonas media WS]
gi|407182876|gb|EKE56795.1| deaD [Aeromonas media WS]
Length = 563
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I+E P RQ LFSATMP ++++++K+L P I ++ A
Sbjct: 100 MLRMGFIDDVDWIMEQCPATRQVALFSATMPDQIRRVAQKHLKQPKEIKIITKT--STAP 157
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V +VF +TK A+E++ L + A EALHG
Sbjct: 158 TIRQRYWQVTGLHKLDAMTRLLEVEPYEA-VLVFVRTKNAAEELAGKLAARGHACEALHG 216
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 217 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 276
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ + E++ T+ G
Sbjct: 277 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMG 336
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 337 ---EELEIYVNLVNELIEEDSAD 356
>gi|414155170|ref|ZP_11411485.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411453220|emb|CCO09389.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 532
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 153/272 (56%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+++P +RQ++LFSATMP+ + +L+++Y+ NP + + ++ A
Sbjct: 162 MLDMGFIEDIEEILKHIPAERQTLLFSATMPAEIVRLAQQYMKNPQYVTV--SKSTLTAP 219
Query: 61 GIKLYAISTTATSKRTILSDLI--TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
I K L L+ T A+G IVF +TKR DE+ L + + AL
Sbjct: 220 QIDQVYYEVPEKHKLEALCRLLDTTDIAQG---IVFCRTKRGVDELVAGLQARGYTAAAL 276
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QR + FR G+ +LVATDVAARGLDI V +I+Y++P DPE +VHR GR
Sbjct: 277 HGDLSQQQRNNVMRQFRSGEVELLVATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGR 336
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG+ G AI + + R +R +E + + P V DV E E + L +
Sbjct: 337 TGRAGRSGVAITIINPREYRQLRLIENITKTRIKRERLPSVADVAERQKEGIKERLLRLM 396
Query: 238 PE-SVEFFTPTAQRLIEEKGTDALAAALAQLS 268
E + ++ LI+E +AAA +LS
Sbjct: 397 EEGKLGYYRSIVDSLIDEYDPMDIAAAALKLS 428
>gi|335040306|ref|ZP_08533437.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
gi|334179782|gb|EGL82416.1| DEAD/DEAH box helicase domain protein [Caldalkalibacillus thermarum
TA2.A1]
Length = 457
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 154/269 (57%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ ILE P ++Q++LFSATMP +K+L+ +++ NP + + Q
Sbjct: 156 MLNMGFIDDITAILEQCPQEKQTLLFSATMPEPIKELALRFMQNPAEVKIKVKQ--VTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + K IL L+ + + IVF +TKR DE+S AL +E +HG
Sbjct: 214 LIEQYYLEVQEKQKFDILCRLLDLESPE-LAIVFGRTKRRVDELSEALKRRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R++ +N FR G +LVATDVAARGLDI V + ++++P DPE +VHR GRTG
Sbjct: 273 DLSQARRDQVINLFRTGSIDILVATDVAARGLDIQGVTHVCNFDIPQDPENYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AI + ++++E + K E P + +VL+ + + L V E
Sbjct: 333 RAGQTGKAITFVVPRELDHLKTIEHLIRRKLEKKRIPTISEVLKGRQQAAMERLLRVAEE 392
Query: 240 S-VEFFTPTAQRLIEEKGTDALAAALAQL 267
++ F AQ L+EE+ + L AA +L
Sbjct: 393 GDLQVFQRMAQALLEEQDSVTLVAAALKL 421
>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 514
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 174/337 (51%), Gaps = 27/337 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLA 59
ML +GF +D++ I+ + +RQ+M+FSATMP +K L++KY+ + I +V +
Sbjct: 155 MLDMGFIDDIKEIINHTNKERQTMMFSATMPDEIKNLAKKYMKSDAKFISIV--KKTMTV 212
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ + + L ++ V + TI+F +TK++ DE++ + S E +H
Sbjct: 213 STVQHFYYEVKNQERFESLCRILDV-EEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QR TL F++G LVATDVAARG+DI N+ +I+Y LP D E++VHR GRT
Sbjct: 272 GDMSQNQRINTLRKFKEGNLDFLVATDVAARGIDIENLTHVINYNLPQDVESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-H 237
GRA + G A + TS + ++ +ER+ CK P ++D+ + +++ + V
Sbjct: 332 GRANRSGVAYTLVTSREYPALKRIERETKCKIRRKELPTIDDIFQVKYNKMIKDIKRVLE 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQL-------SGFSRPPSSRSLINHEQGWVTLQ 290
+ + F P A L EE +AAAL + P R IN
Sbjct: 392 NDGYKRFVPLAMELDEEYNLVDVAAALMDMYYGKELYYNDDEPKYVRLFIN--------- 442
Query: 291 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
L R +R R+++ L D+ + ++IG I I
Sbjct: 443 LGRKDKLNR-----RTLLKLLMDIGDISKEDIGTIDI 474
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 158/280 (56%), Gaps = 14/280 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ ++L +P+++ + +Q E
Sbjct: 160 MLKMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIESSQ--TTVE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + ++GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVEQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL TS + R +R++ER + + P E V E EQ+ T+N
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERSTNSRISPMKIPSPETVAERRLSRLGEQLAETMN- 395
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL RP
Sbjct: 396 ---TDLDFMKDAVAQLCQQLEVDTDLLAAALLHQVQQERP 432
>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
succinogenes DSM 1740]
gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
succinogenes]
Length = 505
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 139/234 (59%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I LP RQ++LFSATMP+ +K L++K L NP + + N+
Sbjct: 167 MLDMGFLDDIEEIFTYLPASRQTLLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDI 226
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y I+ + + LI A KTI+FT+ K++AD++S L + + ALHG
Sbjct: 227 SQRYYIIN--EYEREDAIVRLIDSEAPS-KTIIFTRMKKEADDLSNRLIAKGYQAGALHG 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q +R+ +N F+QG +LVATDVAARGLDI NV + +Y +P +PE++VHR GRTG
Sbjct: 284 DMEQRERQAAVNAFKQGAIDILVATDVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAGK+G AI + T + + +R + E P + + L+ + +++ L
Sbjct: 344 RAGKKGIAITLATPLEFKEIRRISETTKATIELYEIPTIAETLKQTDSKLIQNL 397
>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
Length = 478
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 152/272 (55%), Gaps = 10/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL P R + FSATMP ++ L ++L +P+ + + Q
Sbjct: 157 MLSMGFIDDVKTILRKTPDARNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRI 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
LY + SKR L ++ + I+F +TK+ A +++ L I S + HG
Sbjct: 217 DQHLYMVPR-GWSKRKALQPILEI-EDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QRER ++ FR GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTG
Sbjct: 275 NLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK GTAI + RR VR +E+ + K E P V LE Q+ +L G
Sbjct: 335 RAGKTGTAISLIEPIDRRMVRQIEKRLRQKLETCKLPSRSQVEAKRLEKLQNQIKESLAG 394
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + F P + L +E A+AAA Q+
Sbjct: 395 ---ERMASFLPLVRELSDEYDPQAIAAAALQM 423
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 161/272 (59%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++++P RQ++LFSATMP +K++ +++ NP ++ + E A
Sbjct: 155 MLNMGFLDDIESIIKSVPNDRQTLLFSATMPEDIKRIGVQFMKNPEHVQIKAK--EMTAS 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K IL+ L+ V+ +I+F +TKR DE+S AL S +E +HG
Sbjct: 213 LIDQYFMRVKEFEKFDILTRLLDVHTPE-LSIIFGRTKRRVDELSRALESRGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++G+ +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMDVLKAFKKGELDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK+G ++ T ++ ++++E+ + + PP ++ ++S+ E++ L
Sbjct: 332 RAGKDGMSVTFVTPNEMSYLQTIEKLTKKRMTPLKPPTKKEAFAGQMQSAMEEIAQKLEN 391
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
++ + A +L+E+ L A L ++
Sbjct: 392 T---DLDRYVKQADQLLEQYSAIDLTALLLKV 420
>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 547
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 160/276 (57%), Gaps = 24/276 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-- 58
ML +GF+E +E IL+ +P +RQ++LFSAT+P ++KK++ KY +D K+
Sbjct: 158 MLKMGFQEALETILKKIPEERQTVLFSATLPPFIKKIASKY-----------QKDTKILQ 206
Query: 59 --AEGIKLYAISTT-----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111
+ I + AI K +L L+ + K TI+F TK+D DE++ L
Sbjct: 207 VPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDL-KKDYSTILFANTKKDVDEITAYLQDK 265
Query: 112 -IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++A+HGD+ Q+QR+ +N FR+GK +L+ATDVAARGLDI ++ ++I+Y+LP++ E
Sbjct: 266 GFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISDIKMVINYDLPHEDEV 325
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
+VHR GRTGRAGK+G A + + + ++ LE + K + P V+ + +A+ +
Sbjct: 326 YVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYYLKEKITLLDIPSVQSIKLQNAKDLE 385
Query: 231 ATLNGVHPESVEFFTPT--AQRLIEEKGTDALAAAL 264
+ + ++ E TP AQ+L+E ++ + L
Sbjct: 386 KKILNIIEKNKEETTPNPLAQKLLENFSSEQIIQGL 421
>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 647
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 159/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I+E P Q +LFSATMP VK++ ++L NP ID+ G ++ +A+
Sbjct: 161 MLKMGFVDDVTWIMEQAPETAQRVLFSATMPPIVKEIVDRFLRNPARIDVAG-ENRTVAK 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ + + ++ L T +IVF +T++D + ++ L + + ALHG
Sbjct: 220 VDQQFWVVKGVEKDEAMMRLLETEDTDA--SIVFVRTRQDTERLADWLCARGFKAAALHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+ ++G +LVATDV ARGLD+P + + +Y++P D E+++HR GRTG
Sbjct: 278 DIPQSLRERTVEHIKRGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG AIL+ ++Q R +R++ER + E + P+ + V E+ ++ L +
Sbjct: 338 RAGREGKAILLVRTNQIRMLRTIERVTKSRMEEIQLPLRDAVAEARLNRLAKELEAQKEQ 397
Query: 240 -SVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
SVE F ++L E DA LAA L Q +RP
Sbjct: 398 SSVEAFVELVEKLQESIEVDAATLAAMLLQRQQGNRP 434
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 146/238 (61%), Gaps = 9/238 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E++E IL+ P +Q+ LFSAT+P + +++K+L P+++ + + E +AE
Sbjct: 172 MLDMGFAEELEAILDATPENKQTALFSATLPPRIGGIAQKHLRQPVHVKV---EREVVAE 228
Query: 61 G----IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASE 115
G ++ A + K L+ ++ + + IVF +T+ + DE+S LT+ + +E
Sbjct: 229 GESARVRQVAYVVSRAHKMPALARVLDIE-QPTSAIVFCRTRTEVDELSETLTARGLRAE 287
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
ALHG +SQ QR+R + FR K +L+ATDVAARGLD+ +V ++++++P D ET+VHR
Sbjct: 288 ALHGGLSQDQRDRVMQKFRARKVDLLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRI 347
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
GRTGRAG+EG A+ + R +R++ER G K E P V D+ E V ATL
Sbjct: 348 GRTGRAGREGVAVTFAEPRENRLLRNIERQTGQKIEIAQVPTVADLRAHRRELVRATL 405
>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
Length = 467
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 142/241 (58%), Gaps = 6/241 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D++ I + +P RQ++LFSATMP + L++ L +P I + + E E
Sbjct: 150 MLDMGFLDDIKEIFKYVPSNRQTLLFSATMPKPILSLAKTILKDPEFIQIT--KKEVTNE 207
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK Y + L LI Y + K IVF +TK+D D V+ L+ + ++ LHG
Sbjct: 208 NIKEYFYVIDEHERNDALIRLID-YKQPNKAIVFCRTKKDVDTVADFLSGVGFDAKGLHG 266
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q +RE + GF+ + +LVATDVAARGLD+ +V + +Y LP DPE++VHR GRTG
Sbjct: 267 DMDQRKREEVIKGFKGNRIEILVATDVAARGLDVNDVTHVFNYHLPLDPESYVHRIGRTG 326
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGKEG AI + T + R + +++ K E P ++DV + ++++ ++ + P
Sbjct: 327 RAGKEGMAISLVTPHEFRALSKIQKI--SKIELKEVPTLQDVKNTEIQKIMEKISSIEPN 384
Query: 240 S 240
+
Sbjct: 385 T 385
>gi|441517957|ref|ZP_20999687.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441455272|dbj|GAC57648.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 582
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 152/249 (61%), Gaps = 11/249 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF ED+E IL + P +Q LFSATMP + +L+RKYLD+P + + A
Sbjct: 167 MLSMGFAEDIERILADTPDSKQVALFSATMPPTIGRLARKYLDDPQEVKV--KAQTSTAS 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ + K L+ ++ V G I+F +TK +E++ L + +++ A++G
Sbjct: 225 NITQRYLTVSHQRKLDALTRVLEVEPFDG-MIIFVRTKSGTEELAEKLRARGLSAMAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRERT+N ++G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 284 DMVQAQRERTINQLKEGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNG 235
RAG+ GTA+L + +R +R++ER + + P V+DV +A++VV A N
Sbjct: 344 RAGRSGTALLFVSPRERHLLRAIERATRQELTEIDLPSVDDV---NAQRVVKFGEAITNN 400
Query: 236 VHPESVEFF 244
+ E ++ F
Sbjct: 401 LESEHLDMF 409
>gi|39939200|ref|NP_950966.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
OY-M]
gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
OY-M]
Length = 552
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 177/321 (55%), Gaps = 32/321 (9%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-- 58
ML +GF+E +E IL+ +P +RQ++LFSAT+P ++KK++ KY +D K+
Sbjct: 158 MLKMGFQEALETILKKIPEERQTVLFSATLPPFIKKIASKY-----------QKDTKILQ 206
Query: 59 --AEGIKLYAISTT-----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111
+ I + AI K +L L+ + K I+F TK+D DE++ L
Sbjct: 207 VPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDL-KKDYSAILFANTKKDVDEITAYLQDK 265
Query: 112 -IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++A+HGD+ Q+QR+ +N FR+GK +L+ATDVAARGLDI ++ ++I+Y+LP++ E
Sbjct: 266 GFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGLDISDIKMVINYDLPHEDEV 325
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
+VHR GRTGRAGK+G A + + + ++ LE + K + P V+ + +A+ +
Sbjct: 326 YVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYYLKEKITLLDIPSVQSIKLQNAKDLE 385
Query: 231 ATLNGVHPESVEFFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVT 288
L + ++ E TP AQ+L+E ++ + L L F P R+ + +
Sbjct: 386 KKLLNIIEKNNEDATPNQLAQKLLETFSSEQIIQGL--LKKFL--PKERNYTD----ILP 437
Query: 289 LQLTRDSAFSRGFMSARSVMG 309
++T +++F+R S G
Sbjct: 438 PKMTTNNSFTRSRFGGESRFG 458
>gi|398309564|ref|ZP_10513038.1| DEAD/DEAH box helicase [Bacillus mojavensis RO-H-1]
Length = 494
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 159/278 (57%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL N+P + Q++LFSATMP+ +K+++ +++ P ++ + E
Sbjct: 157 MLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK--EMTVS 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K L+ L+ + + IVF +TKR DE++ AL A+E +HG
Sbjct: 215 NIQQFYLEVQERKKFDTLTRLLDIQSPE-LAIVFGRTKRRVDELAEALNLRGYAAEGIHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 274 DLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAGK G A+ T + +R++E+ K + + P +++ LE + V L +
Sbjct: 334 RAGKTGMAMTFITPREISMLRAIEQTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISE 393
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
++ F+ A L+E+ DA+ A + ++ P S
Sbjct: 394 NNLNFYMTAAAELLEDH--DAVTVVAAAIKMATKEPDS 429
>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
Length = 513
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 156/271 (57%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ ILEN+P +RQ++LFSATMP ++K++ ++ +P + + E +
Sbjct: 156 MLNMGFIDDINSILENVPAERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAK--ELTVD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K +LS L+ V+ + I+F +TKR DE++ AL+ +E +HG
Sbjct: 214 NIDQYFVKSAEREKFDVLSRLLNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++ K +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T + +R +E + + PP ++ L + TL G+
Sbjct: 333 RAGKSGLAVTFVTPREMGYLRIVEETTKKRMTPLRPPTTDEALVGQQRLALDTLEGLIAN 392
Query: 240 SV--EFFTPTAQRLIEEKGTDALAAALAQLS 268
+ ++ T ++ L + D +AAAL L+
Sbjct: 393 NNLGDYRTLASEILDNHEAIDVVAAALRSLT 423
>gi|383820631|ref|ZP_09975884.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
gi|383334548|gb|EID12986.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium phlei RIVM601174]
Length = 559
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E+VE IL P +Q LFSATMP+ +KK++ KYL +P+ + + AE
Sbjct: 168 MLTMGFAEEVERILAETPEYKQVALFSATMPAAIKKITTKYLHDPVEVTV--KSKTATAE 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 226 NISQRYIQVAGPRKMDALTRVLEV-EQGDAMIVFVRTKQATEEVAERLRARGFAAAAING 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT+ + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 285 DIPQAQRERTIAALKDGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L T +R ++S+E+ K P VEDV
Sbjct: 345 RAGRSGQALLFVTPRERHLLKSIEKATRSKLIEAELPSVEDV 386
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 160/273 (58%), Gaps = 10/273 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ IL+ LP +RQ++LFSATMP ++ ++ ++NP + + E E
Sbjct: 155 MLNMGFIEDIRDILKALPEERQTLLFSATMPKEIRDIATTLMNNPEEVKV--KSKEMTVE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + K L+ L+ ++ IVF +TKR DEV+ L + ++E +HG
Sbjct: 213 NIEQYFVEIPEKHKFDTLTRLLDIHDPA-LAIVFGRTKRRVDEVADGLQARGFSAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R TLN F++G+ +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 272 DLTQGKRMSTLNKFKRGRIEILVATDVAARGLDISEVSHVYNFDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT---LNGV 236
RAG++G +I T ++ + +E+ K E + P E+ S +Q VA + +
Sbjct: 332 RAGRKGESISFVTPREKDQLNLIEKLTKKKVERLKVPSSEEA--SRGQQKVAVDKLVESL 389
Query: 237 HPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
++ + +A L+E+ +D +AAAL ++
Sbjct: 390 GANDLKNYKHSANELLEQYDSSDIIAAALKMMT 422
>gi|427725149|ref|YP_007072426.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427356869|gb|AFY39592.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 494
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 156/276 (56%), Gaps = 16/276 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL P RQ+ FSATMP ++ L +L+ P+NI + Q + +
Sbjct: 157 MLSMGFIDDVKRILRQSPASRQTACFSATMPPAIRDLVANFLEEPINITI--KQPQVTPD 214
Query: 61 GIK--LYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EAL 117
IK Y I + + +L I A I+F +TKR A E++ L S +
Sbjct: 215 RIKQEAYMIPRGWSKTKALLP--ILEMANPESAIIFVRTKRTASELTNELLEAGQSADEY 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QRE+ + F+ G+ ++VATD+AARGLD+ N+ +++++LP++ E+++HR GR
Sbjct: 273 HGDLSQAQREKLVRRFKDGRIKMIVATDIAARGLDVANLSHVVNFDLPDNTESYIHRIGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVG-----CKFEFVSPPVVEDVLESSAEQVVAT 232
TGRAGK GTAI + S RR +R +ER V CK P V + + QV
Sbjct: 333 TGRAGKTGTAIALVEPSDRRLLRQIERRVKQSLTTCKIP-SRPEVEANRINRLETQVREA 391
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
L G E + F P +RL +E A+AAA+ Q++
Sbjct: 392 LAG---ERMASFLPIVKRLGDEYDPQAIAAAVLQMT 424
>gi|404422771|ref|ZP_11004447.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403655804|gb|EJZ10637.1| ATP-dependent rna helicase, dead/deah box family protein
[Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 576
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 162/276 (58%), Gaps = 21/276 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E+VE IL + P +Q LFSATMP ++K++ KYL +P+ + + AE
Sbjct: 168 MLTMGFAEEVERILADTPEYKQVALFSATMPPAIRKITTKYLHDPVEVTVKAKT--ATAE 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V +G IVF +TK+ +EV+ L S A+ A++G
Sbjct: 226 NITQRFIQVAGARKLDALTRVLEV-EEGDAMIVFVRTKQATEEVAERLRSRGFAAAAING 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ + G +L+ATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 285 DINQAQRERTITALKDGTIDILIATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV----ATLNG 235
RAG+ G A+L T +R ++S+E+ K P V+DV +A++V + +
Sbjct: 345 RAGRSGHALLFVTPRERHLLKSIEKHTRSKVIEAELPSVDDV---NAQRVAKFRDSITDS 401
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDA----LAAALA 265
++ + +E F +RLIE E+ D +AAALA
Sbjct: 402 LNSDGLELF----RRLIEDYERENDVPMADIAAALA 433
>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
Length = 617
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 162/280 (57%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE+ P +RQ LFSATMPS +++++ ++L+NP + +V +
Sbjct: 163 MLRMGFIDDVEWILEHTPEQRQIALFSATMPSVIRQVANRHLNNPKEVKIVTKTATNTSI 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K + +S K L+ ++ + G I+F +TK E++ LT+ A EAL+G
Sbjct: 223 TQKYWQVS--GLHKLDALTRILEMSEHDG-MIIFVRTKAATVELAEKLTARGHACEALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DISQ+ RERT+ ++G+ +LVATDV ARGLDI + +++Y++P D E++VHR GRTG
Sbjct: 280 DISQNLRERTVERIKRGQIDILVATDVVARGLDIDRISHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G AIL +RR ++++ER E + P D+ + +++ TL+
Sbjct: 340 RAGRTGNAILFVAHRERRMLQAIERATRQPIERMQLPTASDINTQRVNRFKQRITDTLDN 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
++FF A+ +E + L AAALA ++ P
Sbjct: 400 A---DLDFFIELAESYQKEHEAEPLKVAAALAHMAQGKNP 436
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 139/225 (61%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ ++K+S++YL NP + + EK
Sbjct: 254 MLNMGFQEDVERILEDTPEAKQVALFSATMPAGIRKISQQYLTNPAEVTV--KTREKTNT 311
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L ++ V G IVF +TK + +EV+ AL + ++ A++G
Sbjct: 312 NITQRWIFVPHRDKLQALVRILEVTDVDG-MIVFVRTKSETEEVADALRAAGFSAAAING 370
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ + G+ +LVATDVAARGLD+ + ++++++P + E++VHR GRTG
Sbjct: 371 DIAQAQRERTVEQLKSGRLDILVATDVAARGLDVERISHVVNFDIPREAESYVHRIGRTG 430
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T ++R +R++ER P V++V E+
Sbjct: 431 RAGRSGEAILFVTPKEKRMLRTIERATKATLTEDELPTVDEVNEA 475
>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
Length = 611
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 154/280 (55%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ KYL +P+++ +
Sbjct: 161 MLKMGFIDDIEWILEHTPKQRQLALFSATMPEQIKRVANKYLTDPIHVKIAATTATVETT 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ +S +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 221 EQRFVQVSQH--NKLEALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + ++G +L+ATDVAARGLD+ + +I+Y++P D E ++HR GRTG
Sbjct: 278 DMNQQARERAVEQLKRGSLDILIATDVAARGLDVERIRHVINYDIPYDTEAYIHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL T + R +R++ER + + P E V E EQV +N
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATKSRISPMDVPSPESVTERRLSRLGEQVAEIIN- 396
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+S++F +L + E TD LAAAL Q RP
Sbjct: 397 --KDSLDFMKGAVAQLCQQLEVDTDVLAAALLQQVQKDRP 434
>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
Length = 520
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 180/334 (53%), Gaps = 17/334 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLA 59
ML +GF ED+E IL+ P +Q++LFSATMP+ +KK++ Y+ D+ ++I + K A
Sbjct: 158 MLNMGFVEDIETILKATPDNKQTVLFSATMPATIKKIASNYMQDDYMHIQI--KSKTKTA 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
+ Y T T+K L ++ + TI+F +TKR DEV ++ EA+H
Sbjct: 216 STVSQYYFETRPTNKFETLCRILD-SRQMENTIIFCKTKRSVDEVVASMQQKHYDVEAMH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QR TL F+ G LVATDVAARG+D+ N+ +I+YE+P D E ++HR GRT
Sbjct: 275 GDLSQNQRTNTLKRFKSGHIQYLVATDVAARGIDVDNISHVINYEMPQDEELYIHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRA K+G A + T+ ++ + S+++ E + P +++ + ++++ +
Sbjct: 335 GRANKKGEAYSLVTNREKNFLMSIQKRTNSHIEKLDVPSNQEIFDQKIKELLFDVQEEML 394
Query: 239 ES-VEFFTPTAQRLIEEKGTDALAAALA----QLSGFSRPPSSRSLINHEQGWVTLQLTR 293
+S + F T + + + TD +A L+ Q GF + + +++ ++T
Sbjct: 395 KSHKDVFMDTIKDIPHDMRTDVMATLLSMCYQQRVGFDYQEETSAGSQYDRVFMT----- 449
Query: 294 DSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
S ++ + V+ FL+ + +IG I I
Sbjct: 450 --CGSMDRINVKDVIEFLTKYGKIKSSDIGDITI 481
>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 642
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I+E P RQ LFSATMP ++++++K+L P I + A
Sbjct: 174 MLRMGFIDDVDWIMEQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 231
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V +VF +TK A+E++ L + A EALHG
Sbjct: 232 TIRQRYWQVTGLHKLDAMTRLLEVEPYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 290
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 291 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 350
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 351 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 410
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 411 ---EELEIYVNLVNELIEEDSAD 430
>gi|416350513|ref|ZP_11680893.1| putative ATP-dependent RNA helicase [Clostridium botulinum C str.
Stockholm]
gi|338196239|gb|EGO88444.1| putative ATP-dependent RNA helicase [Clostridium botulinum C str.
Stockholm]
Length = 453
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 172/340 (50%), Gaps = 22/340 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P RQ++LFSATM + +LS+KY +N I +V Q
Sbjct: 84 MLDMGFRDDIETIIQAIPQNRQTILFSATMAKAIIELSKKYQNNAEFIKVVHKQ--LTVP 141
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ + +K +LS LI + + K +++F TK+ DEV L + +E LH
Sbjct: 142 NIEQRYLEVKENNKLEVLSRLIDM--RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLH 199
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QR+R +N FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRT
Sbjct: 200 GDMKQPQRDRVMNKFRNGTIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRT 259
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAG+ G A R +R +ER K + P DV E + + G
Sbjct: 260 GRAGRSGIAFTFVAGKAIRKLRDIERYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIE 319
Query: 239 ES--VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQG---------WV 287
E ++ L E+ T +AAAL ++S IN E G +
Sbjct: 320 EGHLGKYIDYIENLLDEDYATIDIAAALLKMSLGEEKKEEILDINEEIGDTGAEPGMVRL 379
Query: 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
+ + R++ + AR V+G ++ A IGKI I
Sbjct: 380 FINIGRNNK-----IQARDVIGAIAGETGIAGKVIGKIDI 414
>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
Length = 502
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 156/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P RQ++LFSATMP+ +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPENRQTLLFSATMPTAIKNIGIKFMKNPDHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L T +E +HG
Sbjct: 213 LIDQYYVRSKDYEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLETRGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRAFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G ++ T ++ + +E + + PP + + + + E
Sbjct: 332 RAGKGGMSVTFVTPNEMGYLHVIEDLTKKRMSTLRPPTETEAFKGQLGAAIEDIEKKMEE 391
Query: 240 S-VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
+ +E + +A+ L+E+ ++ L A L ++ S+ PS
Sbjct: 392 NGLEKYLKSAENLLEKYSSEDLVALLLKV--VSKDPS 426
>gi|373856036|ref|ZP_09598781.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372453873|gb|EHP27339.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 481
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ++VE I++ LP R +M+FSAT+P+ V+ L +Y++NP++I++ + +
Sbjct: 158 MLNMGFIDEVEAIIKELPANRVTMVFSATLPTDVENLCHEYMENPIHIEIAASG--VTTD 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I K T+L D +TV ++F +TK D V AL + + E LHG
Sbjct: 216 TIEHSLIEVKEEEKITLLKD-VTVVENPDSCLIFCRTKEHVDSVYTALEAANYSCERLHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ Q R ++GF+ G F LVATDVAARG+DI NV L+I+Y++P + E +VHR+GRTG
Sbjct: 275 GLDQEDRFAVMDGFKMGNFRYLVATDVAARGIDIDNVTLVINYDVPMEKEGYVHRTGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG +G AI T + + VR +ER +G + E P E+V
Sbjct: 335 RAGNKGKAITFATPYEGKFVRGIERYIGFEIEKAEAPGSEEV 376
>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
Length = 606
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 168/298 (56%), Gaps = 14/298 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL+ LP +RQ +LFSATMP+ +++LS++YL P I + ++ A+
Sbjct: 212 MLRMGFIDDVEWILDQLPEERQVVLFSATMPNEIRRLSKRYLREPAEITI--KTKDREAK 269
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ +I+ K L+ ++ G I+F +TK V+ +L + A L+G
Sbjct: 270 RIRQRSITLQNAHKIEALNRVLEAVTGEG-VIIFARTKAITLTVAESLEAAGHDVAVLNG 328
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q+QRERT++ R+G +LVATDVAARGLD+ + L+I+Y++P D E +VHR GRTG
Sbjct: 329 DVPQNQRERTVDRLRKGTVNILVATDVAARGLDVDRIGLVINYDMPFDSEAYVHRIGRTG 388
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL T +RR V +LER V E + P ++ +S +++ L+
Sbjct: 389 RAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMDIPSNAEINQSRLDRLRDRLSQAAAC 448
Query: 240 SVEFFTPTAQRLIEEKG------TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
T Q LI+ G D LA A +L+ +P L++ ++ W+ L
Sbjct: 449 EANDETSLLQELIQRVGQEHELTADQLALAAMKLAVGDQP----LLVSGDESWLQTPL 502
>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175666|ref|YP_004652476.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia
acanthamoebae UV-7]
gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480024|emb|CCB86622.1| deAD-box ATP-dependent RNA helicase CshA [Parachlamydia
acanthamoebae UV-7]
Length = 538
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I LP +RQ++LFSATMP ++KL++ +L P I + + E ++
Sbjct: 202 MLNMGFLEDIQEIFTFLPKERQTLLFSATMPLPIQKLAKTFLREPEFIKIT--KKETASQ 259
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + L L+ + K+I+F +TK+D D VS LTS + LHG
Sbjct: 260 NIQQICYVIHESERDDALVRLLDAQEEA-KSIIFCRTKKDVDRVSSFLTSRGYGARGLHG 318
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++GFRQ +F +L ATDVAARGL++ +V + +Y LP + E++VHR GRTG
Sbjct: 319 DMEQPQRQRVIDGFRQNEFQILAATDVAARGLNVLDVTHVYNYHLPYETESYVHRIGRTG 378
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
RAG +G AI + + ++ + R+ G E+ S P ++DV AE+ + + H
Sbjct: 379 RAGNKGIAITLLNPREVSGLKHIFREHGGNIEYQSIPTLQDVKRKFAEKFLKKVQQRH 436
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 154/279 (55%), Gaps = 9/279 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ ILEN+P RQ++LFSATMP ++K++ ++ +P + + E E
Sbjct: 156 MLNMGFIDDINAILENVPSDRQTLLFSATMPPAIRKIAETFMKDPEIVKIKAK--ELTME 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS--LALTSIIASEALH 118
I+ + + T K LS L+ K I+F +TKR DE+S L L +A E +H
Sbjct: 214 NIEQFFVKATEREKFDALSRLLD-SQKPELAIIFGRTKRRVDELSQALGLRGFLA-EGIH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ +R L F++GK +L+ATDVAARGLDI V + ++++P DPE++VHR GRT
Sbjct: 272 GDLSQAKRISVLRQFKEGKIDILIATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVH 237
GRAGK G A+ T + +R +E + + PP E+ L E + +L V
Sbjct: 332 GRAGKSGVAVTFVTPREMGYLRIVEETTKKRMTPLRPPSSEEALVGLQEDAMQSLVELVQ 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+ + A +L+E DAL A L ++ P +
Sbjct: 392 NNDLGTYRELAAKLLE--NNDALDLVAAALKSITKEPDA 428
>gi|339009468|ref|ZP_08642040.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|421872706|ref|ZP_16304323.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
gi|338773946|gb|EGP33477.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|372458121|emb|CCF13872.1| DEAD-box ATP-dependent RNA helicase CshA domain protein
[Brevibacillus laterosporus GI-9]
Length = 529
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 149/244 (61%), Gaps = 7/244 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL ++ +RQ++LFSATMP +K+L+ +Y+ NP + + +++E A
Sbjct: 156 MLDMGFIEDIETILSHMKAERQTLLFSATMPPEIKRLAHRYMKNPETVAV--SREEVTAP 213
Query: 61 GIKLYAISTTATSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ +KR L ++ + + G I+F +TKR DE+S AL + ++ LH
Sbjct: 214 SIEQVYYKVFERNKRESLCRILDSQDVELG--IIFCRTKRGVDELSEALQARGYMADGLH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR++ + FR+G L+ATDVAARG+D+ NV +I+Y++P DPE++VHR GRT
Sbjct: 272 GDLSQAQRDKVMKAFREGTIEFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VH 237
GRAG++G A+ + T + R + +++ + P +E++ E Q+ L +
Sbjct: 332 GRAGRKGIAMTLVTPREMRQLMVIQKQTKASLITRTVPTLEEIAERKRTQLREQLRSLIE 391
Query: 238 PESV 241
ESV
Sbjct: 392 SESV 395
>gi|406677544|ref|ZP_11084726.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
gi|404624557|gb|EKB21391.1| hypothetical protein HMPREF1170_02934 [Aeromonas veronii AMC35]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I+E P RQ LFSATMP ++++++K+L P I + A
Sbjct: 163 MLRMGFIDDVDWIMEQCPSTRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V + +VF +TK A+E++ L + A EALHG
Sbjct: 221 TIRQRYWQVTGLHKLDAMTRLLEVESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 340 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 400 ---EELEIYHNLVNELIEEDSAD 419
>gi|423206263|ref|ZP_17192819.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
gi|404621815|gb|EKB18680.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I+E P RQ LFSATMP ++++++K+L P I + A
Sbjct: 163 MLRMGFIDDVDWIMEQCPSTRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V + +VF +TK A+E++ L + A EALHG
Sbjct: 221 TIRQRYWQVTGLHKLDAMTRLLEVESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 340 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 400 ---EELEIYHNLVNELIEEDSAD 419
>gi|379726995|ref|YP_005319180.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
gi|376317898|dbj|BAL61685.1| cold-shock DEAD-box protein A [Melissococcus plutonius DAT561]
Length = 502
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 156/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P RQ++LFSATMP+ +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPENRQTLLFSATMPTAIKNIGIKFMKNPDHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L T +E +HG
Sbjct: 213 LIDQYYVRSKDYEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLETRGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRAFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G ++ T ++ + +E + + PP + + + + E
Sbjct: 332 RAGKGGMSVTFVTPNEMGYLHVIEDLTKKRMSTLRPPTETEAFKGQLGAAIEDIEKKMEE 391
Query: 240 S-VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
+ +E + +A+ L+E+ ++ L A L ++ S+ PS
Sbjct: 392 NGLEKYLKSAENLLEKYSSEDLVALLLKV--VSKDPS 426
>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
Length = 576
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 143/236 (60%), Gaps = 3/236 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ-DEKLA 59
ML +GF +D++ ILE P +Q+ LFSATMP + ++R++L NP+++ + A
Sbjct: 174 MLDMGFADDLDAILEQTPAGKQTALFSATMPPRIASIARRHLKNPVDVTIAREPVKAGAA 233
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ A K + L+ ++ + A +VF +T+ + DEV+ AL +EA+H
Sbjct: 234 PRVQQTAYVVARQHKVSALARVLDI-ATPKSALVFCRTRLEVDEVTAALNGRGYRAEAIH 292
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
G +SQ QR+R + FR G+ +LVATDVAARGLDIP+V +I+Y+LP+ E +VHR GRT
Sbjct: 293 GGMSQVQRDRVMQAFRSGQTELLVATDVAARGLDIPSVSHVINYDLPSSLEVYVHRIGRT 352
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
GRAG+EG A+ + ++R +R++E+ K + P + D+L E+ A++
Sbjct: 353 GRAGREGAAMTIIEPREQRLLRAVEQHTKAKITVAAVPSLGDLLAKRLERTKASIQ 408
>gi|374995988|ref|YP_004971487.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357214354|gb|AET68972.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 536
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 145/231 (62%), Gaps = 5/231 (2%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E +L +P + RQ +LFSATMP ++KL++ Y+++P ++ + ++DE
Sbjct: 161 MLDMGFVDDIESLLREVPAEGRQVLLFSATMPPGIRKLAQTYMNSPRSVTV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ T + K L +I + G+ I+F +TKR DE+ +AL + ++ALH
Sbjct: 219 PLIEQVFYETRESIKVDALGRIIDM-EDIGQGIIFCRTKRGVDELVVALEARGYFADALH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DP ++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKRFRDGKSELLVATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GR G++G AI + + + R +R +E + + P + D+ E AE +
Sbjct: 338 GRVGRKGQAITLISPKEYRQLRLIENLIKTRIRRQELPSMADISERQAENI 388
>gi|374307851|ref|YP_005054282.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
Length = 539
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 139/231 (60%), Gaps = 4/231 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL +RQ+MLFSATMP+ + LS+KYL NP I V N+ + +
Sbjct: 157 MLDMGFIEDIENILRETSEERQTMLFSATMPAEILSLSKKYLKNPEMIR-VKNKTMTVDQ 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++Y + K +LS ++ + + K I+F TK+ DE+ + + + A EALHG
Sbjct: 216 IEQIY-MKVKNADKSEVLSRILQLES-SKKAIIFCNTKKMVDELVVDMQNRGYAVEALHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q +R+ LN FR+G+ ++L+ATDVAARGLDI +VDL+I+Y+LP + E +VHR GRTG
Sbjct: 274 DLKQQKRDMVLNRFREGQISMLIATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
RAG G + +R +E+ CK + S P + V E Q +
Sbjct: 334 RAGASGKSYSFAYGRDIERLRRIEKYAKCKIKEESIPRYDKVKEKIIHQYI 384
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 158/271 (58%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ IL ++P +RQ++LFSATMP+ ++K++ ++ NP + + E E
Sbjct: 181 MLNMGFIEDINTILASVPAERQTLLFSATMPAPIRKIAETFMKNPEIVKI--KSKEMTVE 238
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + K +LS L+ V+ + IVF +TKR DE++ AL+ +E +HG
Sbjct: 239 NIEQFFVKAHEREKFDVLSRLLNVH-QPELAIVFGRTKRRVDELAHALSIRGYLAEGIHG 297
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ K VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 298 DLTQAKRMSVLRQFKDNKIDVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 357
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAGK G AI T + +R +E + + PP ++ L + V +L+ +
Sbjct: 358 RAGKSGMAITFVTPREMGYLRIVEETTKKRMTPLRPPTSDEALFEQKKIAVESLSETIKQ 417
Query: 239 ESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
++E + A +L+++ D +AAAL L+
Sbjct: 418 NNLEDYAGLAAQLLDQYDAKDIVAAALRSLT 448
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 156/275 (56%), Gaps = 12/275 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ+MLFSATMP ++KL++++L NP ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQSILKLVPDERQTMLFSATMPINIQKLAQQFLSNPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L LI + A I+F +TKR DE+S AL +E LHG
Sbjct: 214 LIDQSYIELHERQKFEALCRLIDMEAPD-LAIIFGRTKRRVDELSEALQKRGYTAEGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +I+++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES----SAEQVVATLNG 235
RAGKEG A T + + +E+ K P + + +E +AE+V L
Sbjct: 333 RAGKEGAAYTFVTPREIDHLHFIEKITRHKISRKPMPSLAEAIEGKQKMTAERV---LEA 389
Query: 236 VHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSG 269
+ E F A L+E+ + LAAA L+G
Sbjct: 390 MQSEDHNQFKGLAISLLEQHDSVHLLAAAFKLLTG 424
>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
B565]
gi|423201948|ref|ZP_17188527.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|423210052|ref|ZP_17196606.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
gi|404615658|gb|EKB12619.1| hypothetical protein HMPREF1167_02110 [Aeromonas veronii AER39]
gi|404615940|gb|EKB12898.1| hypothetical protein HMPREF1169_02124 [Aeromonas veronii AER397]
Length = 633
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I+E P RQ LFSATMP ++++++K+L P I + A
Sbjct: 163 MLRMGFIDDVDWIMEQCPSTRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V + +VF +TK A+E++ L + A EALHG
Sbjct: 221 TIRQRYWQVTGLHKLDAMTRLLEVESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 340 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 400 ---EELEIYHNLVNELIEEDSAD 419
>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|416377119|ref|ZP_11683540.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|357266298|gb|EHJ14951.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
Length = 480
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 10/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL P R + FSATMP ++ L ++L +P+ + + Q
Sbjct: 157 MLSMGFIDDVKTILRKTPETRNTACFSATMPREIRDLVNQFLKSPVTVSVERKQAAPTHI 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
LY + SKR L ++ + I+F +TK+ A E++ L I S + HG
Sbjct: 217 DQHLYYVPR-GWSKRKALQPILEM-EDPESAIIFVRTKQTASELTTRLQEIGHSVDEYHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QRER + FR GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTG
Sbjct: 275 NLSQSQRERLVYRFRDGKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK GTAI + RR VR +ER + K E P V +E ++ +L G
Sbjct: 335 RAGKTGTAISLIEPVDRRMVRQIERKLRQKLETCKIPSRSQVEAKRIEKLQNEIKESLAG 394
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + F P + L +E A+AAA Q+
Sbjct: 395 ---ERMASFLPLVRELSDEYDPQAIAAAALQM 423
>gi|334563107|ref|ZP_08516098.1| ATP-dependent RNA helicase [Corynebacterium bovis DSM 20582]
Length = 785
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 140/222 (63%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P +Q LFSATMPS +++LS++YL+NP I + NQ + AE
Sbjct: 291 MLNMGFQEDVERILGDTPDGKQVALFSATMPSGIRRLSKQYLNNPREITVKSNQ--RTAE 348
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
I + + +K L+ ++ V I+F +TK + +E++ L + A++G
Sbjct: 349 NITQDFLMVSHRNKLDALTRILEV-TDFEAMIMFVRTKNETEELAERLCDRGFNAAAING 407
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++P+D E++VHR GRTG
Sbjct: 408 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTG 467
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL T +RR ++++ER + P V+ V
Sbjct: 468 RAGRSGRAILFVTPRERRLLKAIERATKSTLNEIDLPDVDAV 509
>gi|390933807|ref|YP_006391312.1| DEAD/DEAH box helicase [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389569308|gb|AFK85713.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 513
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 171/316 (54%), Gaps = 13/316 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLA 59
ML +GF +D++ I+ + +RQ+M+FSATMP +K L++KY+ N I +V +
Sbjct: 155 MLDMGFIDDIKEIINHTNRERQTMMFSATMPDEIKNLAKKYMKSNAKFISIV--KKTMTV 212
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ + + L ++ V + TI+F +TK++ DE++ + S E +H
Sbjct: 213 STVQHFYYEVKNQERFESLCRILDV-DEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QR TL F++G LVATDVAARG+DI NV +I+Y LP D E++VHR GRT
Sbjct: 272 GDMSQNQRINTLRKFKEGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VH 237
GRA + G A + TS + ++ +E+ CK + P V+D+LE +++A + +
Sbjct: 332 GRANRSGVAYTLVTSREYPALKRIEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLE 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297
+ F P A L EE +AAAL + + R+ I + + + L R F
Sbjct: 392 KNDYKRFVPLAMELDEEYNLVDVAAALMDM--YYGEDVYRNDIERDYLRLFINLGRKDKF 449
Query: 298 SRGFMSARSVMGFLSD 313
++ R+ + L+D
Sbjct: 450 NK-----RTAIKLLAD 460
>gi|374335166|ref|YP_005091853.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
gi|372984853|gb|AEY01103.1| ATP-dependent RNA helicase [Oceanimonas sp. GK1]
Length = 596
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 140/234 (59%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE+ P RQ LFSATMP ++++++KYL +P + + +
Sbjct: 163 MLRMGFIDDVEWILEHTPDTRQIALFSATMPPAIQRVAQKYLKDPQEVRIANKT--RTNA 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
I+ K+ L L+ +VF +T++DA+E++ L A EALHG
Sbjct: 221 SIRQRYWFVRGMPKQEALCRLVETENMDA-CLVFVRTRKDAEELAELMSREGHACEALHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RE+ ++ + G+ VLVATDV ARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 280 DIPQKLREKVVDRLKNGRLNVLVATDVVARGLDVERISHVINYDMPHDNESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+EG AIL T ++R++ +LER E +S P +D+ + AE+ A +
Sbjct: 340 RAGREGDAILFVTGREKRSLYNLERHTRQPIEEMSMPSADDINKIRAERFKARI 393
>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|354552384|ref|ZP_08971692.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|353555706|gb|EHC25094.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
Length = 480
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 153/272 (56%), Gaps = 10/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL P R + FSATMP ++ L ++L +P+ + + Q
Sbjct: 157 MLSMGFIDDVKTILRKTPDARNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRI 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
LY + SKR L ++ + I+F +TK+ A +++ L I S + HG
Sbjct: 217 DQHLYMVPR-GWSKRKALQPILEI-EDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QRER ++ FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTG
Sbjct: 275 NLSQSQRERLVHRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK GTAI + RR VR +E+ + K E P V LE ++ +L G
Sbjct: 335 RAGKTGTAISLVEPIDRRMVRQIEKRLRQKLETCKLPSRSQVEAKRLEKLQNEIKESLAG 394
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + F P + L +E A+AAA Q+
Sbjct: 395 ---ERMASFLPLVRELSDEYDPQAIAAAALQM 423
>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
13479]
Length = 561
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 151/271 (55%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP RQ+++FSATMP + ++ K+ P+ + +V + E
Sbjct: 159 MLNMGFLEDMETILSQLPEDRQTVMFSATMPQAIADIAHKFQKEPVTVKVV--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +YA ++VF TK+ DE+ AL +E LHG
Sbjct: 217 KVTQYYYEVKPKTKVEVMCRLLDMYAPK-LSVVFCNTKKGVDELVQALQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR G+ +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 276 DLKQIQRDRVMNSFRNGRTDILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A + +R ++R K + P + DV ++++ + E
Sbjct: 336 RAGREGIAFSFVVGKEVYKLRDIQRYCKTKIIPQAIPSLNDVTGIKVDKILENVADTIEE 395
Query: 240 S--VEFFTPTAQRLIEEKGTD-ALAAALAQL 267
S E ++L+EE T LAAAL ++
Sbjct: 396 SDLSEMINILEKKLLEEDYTSLDLAAALLKM 426
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 153/278 (55%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ LP +RQ++LFSAT+P +K+++ ++++P + + Q A+
Sbjct: 154 MLKMGFVEDIESIIRELPTERQTLLFSATVPQEIKRIADNFMNDPATVHVKTKQ--MTAD 211
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y K +L+ I V +IVF +TKR DEV+ L ++E +HG
Sbjct: 212 LIDQYYSRCKDYEKFDLLTRFIDVQNPE-LSIVFARTKRRVDEVARGLVERGYSAEGIHG 270
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ GK +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 271 DLSQDKRLGVLRNFKNGKLDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 330
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGKEG ++ TS++ +R++E + + PP ++ L VV + +
Sbjct: 331 RAGKEGMSVTFVTSNEMSYLRTIEDLTKKQMSALRPPTTQEALSGQLSNVVEVVKELIEV 390
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E + L E D +A AL + + PSS
Sbjct: 391 EDTGMYQEAITYLSENYTEDEIALALVR--SLVKDPSS 426
>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 530
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 158/268 (58%), Gaps = 4/268 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D++ IL P +RQ+ LFSAT+P V++L K++ P I L+ + + + E
Sbjct: 157 MLDMGFLPDIQKILSQCPRERQTFLFSATLPDEVRELGTKFMKQP-EIILIESPERTVPE 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + K L +I + +++F +TKR+ADE++ LTS ++ALHG
Sbjct: 216 -IEQYYYQVNSRRKIETLCRIIDA-QQPPISLIFCRTKRNADELARVLTSRGYNADALHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R+ ++GFRQG +LVATD+AARGLDI V + ++++P D ++++HR GRTG
Sbjct: 274 DMSQRERDHVMHGFRQGNTKILVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AI + +Q R +R +ER G + E P + + +E + ++ + E
Sbjct: 334 RAGRSGIAITLVEPTQIRLLRMIERHTGKRIERALLPTLAEAVEKRQDLLLERVRQASAE 393
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQL 267
+ A++L+++ + + AA +L
Sbjct: 394 PGDVCLSLAEKLMQQGDPEKMLAAALKL 421
>gi|392956024|ref|ZP_10321554.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
gi|391878266|gb|EIT86856.1| DEAD/DEAH box helicase [Bacillus macauensis ZFHKF-1]
Length = 514
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 157/271 (57%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ILEN+P +R +MLFSATMP ++KL+ +++ + L I + + E +
Sbjct: 156 MLNMGFIEDIETILENVPTERHTMLFSATMPKQIQKLAERFMKDVLIIRVKAS--EMTVK 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L+ L+ +++ I+F +TKR DE++ AL ++E +HG
Sbjct: 214 SIEQEYVEVKEKQKFDALTRLLDIHSPE-LAIIFGRTKRRVDELTEALNKRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R+ L F+ VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLPQNKRDMVLRAFKNNTIEVLVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G AI T + + ++E+ K S P + + +E + + L V E
Sbjct: 333 RAGKTGYAITFITPREIDHLYTIEKITKRKINKRSVPSLHEAIEGQQKMTIEKLLNVMEE 392
Query: 240 S-VEFFTPTAQRLIEEKGT-DALAAALAQLS 268
++ + TA L+EE + L+AAL L+
Sbjct: 393 GDMQAYKQTAMELLEEHDSVSLLSAALKVLT 423
>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 546
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 159/273 (58%), Gaps = 8/273 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ IL +P +RQ+MLFSATMP +++L++ +L+NP ++ ++ Q A
Sbjct: 156 MLDMGFMEDITSILSMVPAERQTMLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K LS LI + + I+F +TKR DE+S AL +++ LHG
Sbjct: 214 LIDQAYIEVHERQKFEALSRLIDMESPE-LAIIFGRTKRRVDELSEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +I+++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVH 237
RAGKEGTA T + + +E+ K P + + +E ++V A ++ V
Sbjct: 333 RAGKEGTAWSFVTPRETDHLHFIEKVTRHKITRKPLPSIAEAIEGK-QRVTAERLIDIVQ 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSG 269
E + + A L+E+ + LAAA+ L+G
Sbjct: 392 NEGNQEYKGIAIHLLEQYDSVNLLAAAIKLLTG 424
>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
C3-41]
Length = 508
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 155/271 (57%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ ILEN+P +RQ++LFSATMP ++K++ ++ +P + + E +
Sbjct: 156 MLNMGFIDDINAILENVPSERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAK--ELTVD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K +LS L+ V+ + I+F +TKR DE++ AL+ +E +HG
Sbjct: 214 NIDQYFVKSAEREKFDVLSRLLNVH-QPELAIIFGRTKRRVDELAQALSIRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++ K +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRISVLRQFKENKIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T + +R +E + + PP ++ L + TL G+
Sbjct: 333 RAGKSGLAVTFVTPREMGYLRIVEETTKKRMTPLRPPTSDEALVGQQRLALDTLEGLIAN 392
Query: 240 SV--EFFTPTAQRLIEEKGTDALAAALAQLS 268
+ ++ T ++ L D +AAAL L+
Sbjct: 393 NNLGDYRTLASEILENHDAIDVVAAALRSLT 423
>gi|336325995|ref|YP_004605961.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
gi|336101977|gb|AEI09797.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
Length = 786
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 146/229 (63%), Gaps = 4/229 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LS++YL++P I + Q + +E
Sbjct: 273 MLNMGFQEDVERILEDTPEDKQVALFSATMPAGIRRLSKQYLNDPQEITVKSTQ--RTSE 330
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + +K L+ ++ V + I+F +TK + +E++ L + + A++G
Sbjct: 331 NIEQDYLFVNHRNKLEALTRILEV-TEFEAMIMFVRTKNETEELAERLRARGFNAAAING 389
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++P+D E++VHR GRTG
Sbjct: 390 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTG 449
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ 228
RAG+ G AIL T +RR ++++ER + P V+ V ++ E+
Sbjct: 450 RAGRSGRAILFVTPRERRLLKAIERATKSTLNEIELPSVDAVNDARKEK 498
>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
Length = 537
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 11/302 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE +LE LP +RQ +LFSATMP ++++S KYL++P + + + +
Sbjct: 233 MLRMGFIDDVEWVLEQLPSQRQVVLFSATMPPEIRRISHKYLNDPAEVTIKTKGAD--SS 290
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
I+ I+ K L+ ++ K G I+F +TK V+ AL + A L+G
Sbjct: 291 RIRQRFITVNGPQKLEALTRVLESETKEG-VIIFARTKAITVTVAEALEAKGYDVAVLNG 349
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRERT+ + G VLVATDVAARGLD+ + L+++Y++P D E +VHR GRTG
Sbjct: 350 DVAQSQRERTIERLKNGTVDVLVATDVAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTG 409
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL T +RR + LER VG E + P + +S +++ L +G+
Sbjct: 410 RAGRSGDAILFVTPRERRFLGGLERAVGRPIEPMQIPSNATINQSRLDRLRQRLSDGLTT 469
Query: 239 ESVE----FFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
E + + QR+ +E G ALA L P L+ ++ W+ RD
Sbjct: 470 EGRDEERALLSEIVQRVAQESGATPEQLALAALQLVVGPQP--LLVQGDESWIRQAAGRD 527
Query: 295 SA 296
Sbjct: 528 GG 529
>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
Length = 560
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 135/217 (62%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ +LE LP +RQ +LFSATMP +K++S+++L NP + + + + A
Sbjct: 170 MLRMGFIDDVKWVLEQLPSERQVVLFSATMPPEIKRISQQHLQNPAEVIIRTQKAD--AS 227
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I K + L ++ + GG I+F +TK V+ AL + IA L+G
Sbjct: 228 RIRQRHILLPHQQKLSALLRVLEAHGPGG-VIIFARTKAVTVTVAEALEAEGIACSVLNG 286
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RERT+ +QG+ VLVATDVAARGLD+ + L+++Y+ P D E +VHR GRTG
Sbjct: 287 DVPQSLRERTIERLKQGRIDVLVATDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTG 346
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG++G AIL + +RR + SLER VG + + P
Sbjct: 347 RAGRQGDAILFLSYRERRLLHSLERAVGSSIDAMDVP 383
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 161/279 (57%), Gaps = 8/279 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ+MLFSATMP+ +K+L+ ++L NP ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQSILKQVPDERQTMLFSATMPANIKRLAEQFLKNPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K LS LI + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIDQAYIEVPERQKFEALSRLIDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVH 237
RAGKEG A T + + +ER + P + + LE ++++A L V
Sbjct: 333 RAGKEGEAWSFVTPREIDHLHFIERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEAVE 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPS 275
+ + A +++E+ L+AAL ++G R S
Sbjct: 392 SGELNEYKGLAIQMLEQYDSVQLLSAALKLMTGEKREAS 430
>gi|244539109|dbj|BAH83152.1| ATP-dependent RNA helicase [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 562
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 177/320 (55%), Gaps = 18/320 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I+ N+P KRQ++LFSATMP +++++R+++ P +I + N +
Sbjct: 161 MLRMGFIEDVETIMSNIPSKRQTVLFSATMPEEIRRITRRFMKEPHDIRIQSNITTR--P 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS--LALTSIIASEALH 118
I Y + K +LS L IVF +TK E++ L L + AL+
Sbjct: 219 NISQYYWYAYSCKKAALLSFLEA--EDFDAAIVFVRTKNMTLELAEFLYLNGYKCA-ALN 275
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q RE+TL F+ G +L+ATDVAARGLD+ + L+I+Y++P D E+++HR GRT
Sbjct: 276 GDMNQIVREKTLERFKNGNLDILIATDVAARGLDVERISLVINYDIPLDVESYIHRIGRT 335
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVH 237
GRAG+ G A+L +RR + ++ER + + V P E + E E+ V + + +
Sbjct: 336 GRAGRAGRALLFVERRERRLLYNIERSIKSNIKEVRLPNTEFLSERRQEKFVELVQHELL 395
Query: 238 PESVEFFTPTAQRLIEEK--GTDALAAALAQLSGFSRP---PSSRSLINHEQGWVTLQLT 292
+ +E + +++ E+K +ALA AL +++ RP P + + +H+ QL+
Sbjct: 396 SKDIEQYNILLKKISEKKQIAIEALATALLKMAQGKRPLIVPPDKPIHHHKH-----QLS 450
Query: 293 RDSAFSRGFMSARSVMGFLS 312
D + + R G ++
Sbjct: 451 HDKKANYKNIERRKKSGAMA 470
>gi|333895980|ref|YP_004469854.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111245|gb|AEF16182.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 513
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/323 (31%), Positives = 172/323 (53%), Gaps = 13/323 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEKLA 59
M+ +GF +D++ I+ + +RQ+M+FSATMP +K L++KY+ + I +V +
Sbjct: 155 MMDMGFIDDIKEIINHTNKERQTMMFSATMPDEIKNLAKKYMKSDAKFISIV--KKTMTV 212
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ + + L ++ V + TI+F +TK++ DE++ + S E +H
Sbjct: 213 STVQHFYYEVKNQERFESLCRILDV-EEPSSTIIFCKTKKEVDELTENMQSRGYNVEGMH 271
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QR TL F++G LVATDVAARG+DI NV +I+Y LP D E++VHR GRT
Sbjct: 272 GDMSQNQRINTLRKFKEGILDFLVATDVAARGIDIENVTHVINYNLPQDVESYVHRIGRT 331
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VH 237
GRA + G A + TS + ++ +E+ CK + P V+D+LE +++A + +
Sbjct: 332 GRANRSGVAYTLVTSREYPALKRIEKATRCKIKRKELPTVDDILEVKYNKMIAEIKKTLE 391
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297
+ F P A L EE +AAAL + + R+ I + + + L R F
Sbjct: 392 KNDYKRFVPLAMELDEEYNLVDVAAALMDM--YYGEDVYRNDIERDYLRLFINLGRKDKF 449
Query: 298 SRGFMSARSVMGFLSDVYPTAAD 320
++ R+ + SD + D
Sbjct: 450 NK-----RTAIKLFSDCRISKND 467
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 158/274 (57%), Gaps = 8/274 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P RQ LFSATMPS +++LS++YL++P + Q + +
Sbjct: 224 MLNMGFQEDVERILADTPDSRQVALFSATMPSAIRRLSKQYLNDPQEYTVKSEQ--RTGD 281
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + +K L+ ++ V + I+F +TK D +E++ L + + A++G
Sbjct: 282 NITQDYLMVSHRNKLDALTRILEV-TEFDAMIIFVRTKSDTEELADKLRARGFEAAAING 340
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRERT++ + G+ +LVATDVAARGLD+ + + +Y++P D E++VHR GRTG
Sbjct: 341 DIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTG 400
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G AIL T +RR ++++ER + P V++V E+ + ++
Sbjct: 401 RAGRTGRAILFVTPRERRLLKNIERATKSHPNEIQLPGVDEVNEARKNKFFTSITEARKG 460
Query: 239 ESVEFFTPTAQRLIEEKG---TDALAAALAQLSG 269
+ V+ F E TD AA A+L G
Sbjct: 461 KQVDIFRELVTEYAEANDVTPTDIAAALAAKLQG 494
>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991428|gb|EEC57434.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 559
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 142/238 (59%), Gaps = 8/238 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL +P +RQ+++FSATMP + ++R + ++ I +V + E E
Sbjct: 181 MLDMGFREDMETILTQMPEERQTVMFSATMPKAIMDIARTFQNDAEVIKVV--RKELTVE 238
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y + +K ILS LI +Y ++VF TK+ D++ L ++ +HG
Sbjct: 239 NIEQYYFEVRSKNKDEILSRLIDIY-NPKLSVVFCNTKKQVDDLISELKGRGYFADGIHG 297
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR+GK +L+ATDVAARG+D+ +VD++ +Y+LP D E +VHR GRTG
Sbjct: 298 DMKQAQRDRVMNDFRKGKTEILIATDVAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTG 357
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL 233
RAG+ G A T + ++ +ER K P ++DV +++ EQV TL
Sbjct: 358 RAGRAGLAFSFVTGKEIYKLKDIERYCKTKIMARQIPSLDDVKNTRIDNLFEQVRKTL 415
>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
25745]
gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
25745]
Length = 526
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 150/268 (55%), Gaps = 9/268 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E P +RQ++LFSATMP+ +KK+ K++ +P I + E A+
Sbjct: 155 MLDMGFLPDIEHIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQITV--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
+ Y + + K IL+ ++ V A ++F +TKR DEVS L T + +HG
Sbjct: 213 LVDQYYVRSKEFEKFDILTRVLDVQAPK-LAVIFGRTKRRVDEVSKGLVTRGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L FR+G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMSILRQFREGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGV 236
RAG GT++ T+ + +R +E + + PP E+ + AEQ + L V
Sbjct: 332 RAGATGTSVTFVTNWEMDYLRDVEHLTKKRLLPMKPPTEEEAFAGRAAMAEQSIEEL--V 389
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAAL 264
V F L+E+ L AAL
Sbjct: 390 QKTDVAKFEEQVDHLLEQHDAKTLVAAL 417
>gi|347520831|ref|YP_004778402.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
gi|343179399|dbj|BAK57738.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
Length = 539
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ P +RQ++LFSATMP+ +KK+ K++ NP +I + E A+
Sbjct: 155 MLNMGFLEDIEFIIGKTPAERQTLLFSATMPNDIKKIGVKFMKNPEHIKVAAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y I T K +L+ L+ V + IVF +TKR DE++ L +E +HG
Sbjct: 213 RIDQYFIKTKEFEKFDVLTRLLDV-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R R L F+ G +LVATDVAARGLDI V + +Y++ D E++VHR GRTG
Sbjct: 272 DLDQNKRLRVLRDFKGGHLDILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----N 234
RAGK G ++ + ++ +R++E+ + + + PP ED ++S + + +
Sbjct: 332 RAGKSGRSVTFVSYNEMGYLRAIEKLTKKEMKGMRPPTKEDAYQASLSVAMDEIKRDLQD 391
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
G + F A++L+ E L A L Q
Sbjct: 392 GSLKGKLTKFDADAEQLLAEYDVKELVAMLIQ 423
>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG-6]
gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
DG6]
Length = 523
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +RQ+ LFSATMP V+ L ++Y + I + Q
Sbjct: 155 MLDMGFAEDIEFILQQTPQQRQTALFSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRT 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
Y + K L ++ V I+F +T+ +AD + +L SE LHG
Sbjct: 215 RQTYYEV--MPREKLDALCRILDVETPS-SAIIFCRTRSEADALGESLQGRGYLSEVLHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+R + FR+G+ +LVATDVAARGLDIP+V +I+Y++PNDPE +VHR GRTG
Sbjct: 272 DMSQAQRDRVMKRFREGQAELLVATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AI + T +RR ++ +ER + + P + DV
Sbjct: 332 RAGRTGLAITLITPRERRMLQIIERASRSRIQRQKLPSLADV 373
>gi|421893868|ref|ZP_16324361.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
gi|385273353|emb|CCG89733.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
Length = 526
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 150/268 (55%), Gaps = 9/268 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E P +RQ++LFSATMP+ +KK+ K++ +P I + E A+
Sbjct: 155 MLDMGFLPDIEHIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQITV--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
+ Y + + K IL+ ++ V A ++F +TKR DEVS L T + +HG
Sbjct: 213 LVDQYYVRSKEFEKFDILTRVLDVQAPK-LAVIFGRTKRRVDEVSKGLVTRGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L FR+G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMSILRQFREGQLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL---ESSAEQVVATLNGV 236
RAG GT++ T+ + +R +E + + PP E+ + AEQ + L V
Sbjct: 332 RAGATGTSVTFVTNWEMDYLRDVEHLTKKRLLPMKPPTEEEAFAGRAAMAEQSIEEL--V 389
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAAL 264
V F L+E+ L AAL
Sbjct: 390 QKTDVAKFEEQVDHLLEQHDAKTLVAAL 417
>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 622
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 152/276 (55%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ K+L + NI + + +
Sbjct: 160 MLKMGFIDDIEWILEHTPEQRQLALFSATMPEQIKRVANKHLKDATNISIAASH--TTVD 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL TS + R +R++ER + + P E V E ++ L +
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQ 396
Query: 240 SVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL RP
Sbjct: 397 DLDFMREAVAQLCQQLEVDTDLLAAALLHQVQQERP 432
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 136/235 (57%), Gaps = 6/235 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ P RQ++LFSATMP ++++ ++ +P+ + + E A+
Sbjct: 155 MLNMGFIEDIETIIRATPSNRQTLLFSATMPKEIQRIGEHFMQDPVTVKIEAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I Y K +L+ I V +AK IVF +TKR DEVS L +E +H
Sbjct: 213 TIDQYFTKCHDREKFDLLTRFIDVSHAK--LAIVFARTKRRVDEVSRGLIERGYQAEGIH 270
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ +R + F+ G+ +LVATDVAARGLDI NV + +Y++P DPE++VHR GRT
Sbjct: 271 GDLSQEKRSSIMKDFKDGRLEILVATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRT 330
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
GRAGK G +I ++ + +R++E K + PP E+ +Q +A +
Sbjct: 331 GRAGKGGMSITFVSNHEMGYLRTIENLTHKKMSPLRPPTEEEAFTGQIKQSLAAV 385
>gi|385832194|ref|YP_005869969.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
gi|343181347|dbj|BAK59685.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
Length = 534
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 153/272 (56%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ P +RQ++LFSATMP+ +KK+ K++ NP +I + E A+
Sbjct: 155 MLNMGFLEDIEFIIGKTPAERQTLLFSATMPNDIKKIGVKFMKNPEHIKVAAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y I T K +L+ L+ V + IVF +TKR DE++ L +E +HG
Sbjct: 213 RIDQYFIKTKEFEKFDVLTRLLDV-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R R L F+ G +LVATDVAARGLDI V + +Y++ D E++VHR GRTG
Sbjct: 272 DLDQNKRLRVLRDFKGGHLDILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-----N 234
RAGK G ++ + ++ +R++E+ + + + PP ED ++S + + +
Sbjct: 332 RAGKSGRSVTFVSYNEMGYLRAIEKLTKKEMKGMRPPTKEDAYQASLSVAMDEIKRDLQD 391
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
G + F A++L+ E L A L Q
Sbjct: 392 GSLKGKLTKFDADAEQLLAEYDVKELVAMLIQ 423
>gi|407794038|ref|ZP_11141068.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
gi|407213891|gb|EKE83744.1| ATP-dependent RNA helicase [Idiomarina xiamenensis 10-D-4]
Length = 605
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 139/234 (59%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P Q LFSATMP+ ++KL++++L + +NI + + +K +
Sbjct: 163 MLNMGFIEDIEAIMTAVPDSAQRTLFSATMPTQIRKLAQRFLRDSVNIRIETAKQDKAS- 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ A + K T L+ L+ + +VF +T++D EV+ L + AL+G
Sbjct: 222 -IRQLAWQVSVLHKMTALTRLLETMDYQ-RVLVFVRTRQDTMEVAEQLQGQGFKAAALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRE+T+N R G +LVATDV ARGLD+P + +I+Y+LP D E++VHR GRTG
Sbjct: 280 DLNQAQREQTVNQLRSGHIEILVATDVVARGLDVPEITHVINYDLPGDHESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+ G AIL F +R ++ ER + E+ P + +Q++ L
Sbjct: 340 RAGRSGEAILFFRPRERHLLKHYERATNSRIEYFEVPTAAQLSSHRQQQLLKKL 393
>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 607
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 138/231 (59%), Gaps = 4/231 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV+ IL + P RQ+ LFSATMP ++ ++ K++ NP++I V Q +
Sbjct: 181 MLRMGFAEDVDRILSDAPNSRQAALFSATMPPAIRSIAAKHMTNPVDI-AVSRQSSTVDS 239
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
++YA+ K L+ + V +G IVF +TK D+V L + S A ++G
Sbjct: 240 VRQIYAV-VPFRDKVDALTRFLQVT-EGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNG 297
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q +RE+ + R G+ VLVATDVAARGLD+ +DL+++++ P +PE +VHR GRTG
Sbjct: 298 DVPQKEREKIIERLRDGRLDVLVATDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTG 357
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
RAG+ GTA+ FT + +R++ER E + PP ++V A V+
Sbjct: 358 RAGRTGTALTFFTPREMGRLRAIERATRGTLEQIVPPSPDEVTAHKAAMVL 408
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 152/276 (55%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ K+L + NI + + +
Sbjct: 160 MLKMGFIDDIEWILEHTPEQRQLALFSATMPEQIKRVANKHLKDATNISIAASH--TTVD 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVEQLKSGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL TS + R +R++ER + + P E V E ++ L +
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQ 396
Query: 240 SVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL RP
Sbjct: 397 DLDFMREAVAQLCQQLEVDTDLLAAALLHQVQQERP 432
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 159/276 (57%), Gaps = 8/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ+MLFSATMP +K+L+ ++L NP ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQSILKQVPDERQTMLFSATMPPNIKRLAEQFLKNPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K LS LI + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIDQAYIEVPERQKFEALSRLIDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVH 237
RAGKEG A T + + +ER + P + + LE ++++A L V
Sbjct: 333 RAGKEGEAWSFVTPREIDHLHFIERVTRHRIARKPLPTLAEALEGK-QRIIAERLLEAVE 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSR 272
+ + A +++E+ L+AAL ++G R
Sbjct: 392 SGELNEYKGLAIQMLEQYDSVQLLSAALKLMTGEKR 427
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 159/270 (58%), Gaps = 6/270 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E++L ++P +RQ++LFSATM + L+RKY +NP + +V +Q+ + E
Sbjct: 159 MLDMGFRDDIEIVLRDMPSERQTLLFSATMSRDILNLTRKYQNNPEFLKVV-HQELTVPE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
++Y K +LS L+ ++ ++VF TKR D++ L A++ LHG
Sbjct: 218 IQQIY-FEVKEKMKLELLSRLLDIH-NFKLSLVFCNTKRRVDKLVTHLQIRGYAADGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QR+R + FR GK VLVATDVAARG+D+ NV+ + +Y++PND E +VHR GRTG
Sbjct: 276 DMTQSQRDRVMAKFRNGKIEVLVATDVAARGIDVENVEAVFNYDVPNDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238
RAGK G A + + +R +++ K E P ++DV + + V +
Sbjct: 336 RAGKTGMAFTFVSGKEIYQLRDIQKYTKTKIEQHQIPSIKDVEAIKTNNFLENVKHVINT 395
Query: 239 ESVEFFTPTAQRLIEEKGTDA-LAAALAQL 267
E +E ++++EE + +AAAL ++
Sbjct: 396 EDLEKQVHLIEKMMEEDYSSVEMAAALLKI 425
>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
Length = 528
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 172/340 (50%), Gaps = 22/340 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P RQ++LFSATM + +LS+KY +N I +V Q
Sbjct: 159 MLDMGFRDDIETIIQAIPQNRQTILFSATMAKAIIELSKKYQNNAEFIKVVHKQ--LTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ + +K +LS LI + + K +++F TK+ DEV L + +E LH
Sbjct: 217 NIEQRYLEVKENNKLEVLSRLIDM--RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QR+R +N FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRT
Sbjct: 275 GDMKQPQRDRVMNKFRNGTIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAG+ G A R +R +ER K + P DV E + + G
Sbjct: 335 GRAGRSGIAFTFVAGKAIRKLRDIERYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIE 394
Query: 239 ES--VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQG---------WV 287
E ++ L E+ T +AAAL ++S IN E G +
Sbjct: 395 EGHLGKYIDYIENLLDEDYATIDIAAALLKMSLGEEKKEEILDINEEIGDTGAEPGMVRL 454
Query: 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
+ + R++ + AR V+G ++ A IGKI I
Sbjct: 455 FINIGRNNK-----IQARDVIGAIAGETGIAGKVIGKIDI 489
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 136/213 (63%), Gaps = 8/213 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + IL LP RQ++L SATMP ++ L++++L NP I + V EK+
Sbjct: 161 MLDLGFAPAIRRILGKLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKI 220
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ ++ ++SKR L D+++ + IVFT+TKR AD VS L ++S A+
Sbjct: 221 DQSVRFL----NSSSKRAALLDILS-EDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAI 275
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ RE++L+GF+ G+ +LVATD+AARG+DI V +++YELPN PE +VHR GR
Sbjct: 276 HGNKSQRNREKSLDGFKNGRIKILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGR 335
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
T RAGK G A+ + ++++ +R +ER +G K
Sbjct: 336 TARAGKSGVAVSLCDATEQPYLRDIERLIGRKI 368
>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
5219]
Length = 431
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 134/229 (58%), Gaps = 6/229 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+E IL P K+Q++LFSATMP + KL++KY NP +V +KL
Sbjct: 158 MLDMGFREDIEFILSRAPGKKQTVLFSATMPKPIIKLTKKYQQNP---QMVKTVHKKLTV 214
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDAD-EVSLALTSIIASEALH 118
I+ Y +K +L LI +Y ++VF TK++ D +V + +H
Sbjct: 215 PQIEQYYFEVKDNAKTEVLCRLIDIY-NFKSSLVFCNTKKNVDKQVETLKARGYLVDGMH 273
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QRER ++ FR+G+ LVATDVAARG+D+ +++ + +Y++P D E++VHR GRT
Sbjct: 274 GDMRQAQRERVMSNFRKGEIETLVATDVAARGIDVESIEAVFNYDIPQDEESYVHRIGRT 333
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
GRAGKEG AI R ++++++ K + P DV + AE
Sbjct: 334 GRAGKEGVAITFAFGKDIRKIKTIQKHTNVKIVRKNVPSQSDVEDIRAE 382
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 136/213 (63%), Gaps = 8/213 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + IL LP RQ++L SATMP ++ L++++L NP I + V EK+
Sbjct: 161 MLDLGFAPAIRRILGKLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKI 220
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ ++ ++SKR L D+++ + IVFT+TKR AD VS L ++S A+
Sbjct: 221 DQSVRFL----NSSSKRAALLDILS-EDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAI 275
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ RE++L+GF+ G+ +LVATD+AARG+DI V +++YELPN PE +VHR GR
Sbjct: 276 HGNKSQRNREKSLDGFKNGRIKILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGR 335
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
T RAGK G A+ + ++++ +R +ER +G K
Sbjct: 336 TARAGKSGVAVSLCDATEQPYLRDIERLIGRKI 368
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 158/272 (58%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+ +P +RQ++LFSATMP ++++ +++ +P + + E A
Sbjct: 156 MLNMGFIDDIESILKEVPSERQTLLFSATMPDPIRRIGERFMHDPEMVRIKAK--EMTAL 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I+ + I K +LS L+ V + IVF +TKR DE+S AL +E +HG
Sbjct: 214 LIEQFFIKVHEKEKFDVLSRLLDVQSPE-LAIVFGRTKRRVDELSRALDMRGYVAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGKEG AI + +R++E+ + + + PP ++ L + E++
Sbjct: 333 RAGKEGMAITFVQPREMGYLRTVEQTTKKRMQPLKPPTWDEAFAGQLRIATEKITEI--- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
V E++ + A L+E+ +AAA+ ++
Sbjct: 390 VTEENLADYKAVASELLEKYDATDIAAAMLKM 421
>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
Length = 403
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 128/198 (64%), Gaps = 3/198 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I E PP +Q++LFSATMP + +L+ ++L++ I + +E +
Sbjct: 166 MLDMGFIEDIEFIFEQTPPVKQTLLFSATMPKAIMRLAERFLNDDYEIVKI-KPEEVTVD 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
IK A + L+ ++ +G K+IVFT+TKR ADE+S L ++A+HG
Sbjct: 225 RIKQKAYRVDTGKEFETLTKILN-ENEGKKSIVFTETKRGADELSKKLRREGFNADAIHG 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +RER L FR+ + +LVATDVAARGLDI VD++ +Y LP D E+++HR GRTG
Sbjct: 284 DYSQAKRERVLRDFRRNRIDILVATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRR 197
RAGK+G AI + ++ + R
Sbjct: 344 RAGKDGLAISIISTLEDR 361
>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
ATCC 33806]
Length = 715
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 144/225 (64%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P ++Q LFSATMPS +++LS++Y+++P I + + +
Sbjct: 235 MLNMGFQEDVERILADTPEEKQVALFSATMPSGIRRLSKQYMNDPHEIQV--KSETRTNT 292
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +E++ L + + A++G
Sbjct: 293 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKFETEELAEKLRARGFNAAAING 351
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ + G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 352 DIAQQQRERTVEQLKDGRLDILVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTG 411
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +R++ER + + P V++V ES
Sbjct: 412 RAGRSGEAILFVTPRERRFLRNIERATNAPLQEMELPTVDEVNES 456
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 152/276 (55%), Gaps = 6/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ K+L + NI + + +
Sbjct: 160 MLKMGFIDDIEWILEHTPEQRQLALFSATMPEQIKRVANKHLKDATNISIAASH--TTVD 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + GK +L+ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 277 DMNQQARERAVEQLKSGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL TS + R +R++ER + + P E V E ++ L +
Sbjct: 337 RAGRTGMAILFVTSREMRMLRTIERATNSRISPMKVPSPETVAERRLSRLGEQLAQTMTQ 396
Query: 240 SVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
++F +L + E TD LAAAL RP
Sbjct: 397 DLDFMREAVAQLCQQLEVDTDLLAAALLHQVQQERP 432
>gi|335998488|ref|ZP_08564399.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348343|gb|EGM49849.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 506
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++N+P +RQ++LFSATMP ++ + K++ P +++ E +
Sbjct: 164 MLDMGFLEDIEAIIKNVPEERQTLLFSATMPKAIRSIGEKFMHEPQVVNIKAK--ELTTD 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ ++ V A TIVF +TKR DE+S L + + A +HG
Sbjct: 222 LVDQYFVKAREYEKFDIMTRILDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 281 DLTQQRRMNILKKFKEGRLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG G ++ T ++ +R +ER + E + PP ++ + + V
Sbjct: 341 RAGHHGISVTFVTPNEMEYLRVIERLTKKRMEPLRPPTEKEAFIGQISSALGDIKDLVEK 400
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
E + A L+E+ L AAL
Sbjct: 401 TETEKYEKQANELLEQYDAVELVAAL 426
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 152/269 (56%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL +P RQ+MLFSATMP ++K++ ++++NP + + E
Sbjct: 156 MLNMGFIDDIEAILSTVPKDRQTMLFSATMPDPIRKIAERFMNNPELVRVKAK--EMTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + K +LS L+ V + IVF +TKR DE++ AL +E +HG
Sbjct: 214 SIEQYYVKVQEREKFDVLSRLLDVQSPD-LAIVFGRTKRRVDELANALNLRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRLSVLRKFKDGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A+ T + ++++E+ + + PP ++ E + + E
Sbjct: 333 RAGREGMAMTFVTPREMGYLKTVEQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKE 392
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAALAQL 267
+++ + A+ L+ E + AA +L
Sbjct: 393 GNIDEYMSVAKELLAEYDPAEVTAAALKL 421
>gi|390941377|ref|YP_006405114.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194484|gb|AFL69539.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 590
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 155/259 (59%), Gaps = 12/259 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I LP +RQ++LFSATMP +K+L+ K L++P + V +D +
Sbjct: 162 MLDMGFLEDIEEIFTYLPKERQTLLFSATMPDPIKRLASKILNDPKFVS-VTPKDHTTND 220
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I +LY + ++ L + + K+IVF +TK++ D +S L ++ A++ LH
Sbjct: 221 DIEQLYYVINEYERDDAMIRLLDALEPE--KSIVFCRTKKEVDRLSTQLMAVGYAAKGLH 278
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QRE + FR + +LVATDVAARGL++ ++ + +Y +P DPE++VHR GRT
Sbjct: 279 GDMEQNQRESVIKAFRSSQIEILVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRT 338
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG--V 236
GRAGK+GTAI + T + +++ + + VG K E P + DV E+ ++ + +
Sbjct: 339 GRAGKKGTAITLVTPIEFHSMQRIGKKVGSKIEHRIVPSLRDVKENKLVKIADDIKNADI 398
Query: 237 HPESVEFFTPTAQRLIEEK 255
H +V+ L+EE+
Sbjct: 399 HESAVKLLA-----LLEEE 412
>gi|345873134|ref|ZP_08825053.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343917536|gb|EGV28334.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 635
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 162/277 (58%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I + P KRQ LFSATMP ++K++++ L +P+ + + N + +
Sbjct: 163 MLNMGFAEDIDWIFDQAPEKRQVALFSATMPPVIRKVAQERLVDPIEVRIASNSE--TVD 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T K IL+ ++ + G ++F +TK E+S L + A+E L+G
Sbjct: 221 TIDQHHCIVTRFHKLDILTRILELEPFDG-MLIFVRTKNATTELSDKLKAHGFAAEPLNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RERT+ +QG+ +LVATDVAARGLD+ + +++Y++P DP +VHR GRTG
Sbjct: 280 DMNQEMRERTVERLKQGQLDILVATDVAARGLDVDRISHVVNYDIPTDPAAYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G AIL+ +R ++++ER + + PP E + ES ++ +A + +
Sbjct: 340 RAGRSGRAILLVEPRERGLLKAIERTIRRSVPPMDPPSAEALSESRIDRFIADVRKTMSD 399
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
+ ++FF R+ +E+ + + AA+LA L RP
Sbjct: 400 QDLDFFYRLLSRIGQEQEIEMIDVAASLAYLYQRERP 436
>gi|357040015|ref|ZP_09101805.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
gi|355356995|gb|EHG04774.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum gibsoniae
DSM 7213]
Length = 482
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 156/278 (56%), Gaps = 7/278 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+++P +RQ+MLFSATMP+ ++ L+ ++++ P I + Q
Sbjct: 156 MLNMGFIEDIENILKDIPAERQTMLFSATMPAPIRALAGRFMNTPEVISVESRQ--VTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I K +L L+ + + I+F +TKR DE+ AL ++E +HG
Sbjct: 214 NIEQGYIEVHEKQKFDVLCRLLDTQSPD-RVIIFGRTKRRVDELFEALNKRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R++ + F++G VLVATDVAARGLDI V I ++++P DPE +VHR GRTG
Sbjct: 273 DLSQARRDQVMRQFKEGAIEVLVATDVAARGLDITGVTHIYNFDIPQDPEGYVHRVGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G AI + T + +R +E + P ++D +E V L V
Sbjct: 333 RAGKAGVAITLVTPREIHHLRVIENMTRGRIARRPVPTLKDAIEGQQRIAVERLLLAVEK 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E +E + A+ L+EE TD++ A L ++ P
Sbjct: 393 EDIEGYRGLAEGLLEE--TDSVTLLSAALKVLTKEPDQ 428
>gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
Length = 579
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 195/376 (51%), Gaps = 20/376 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ IL + P + + LFSATMP+ V +++R ++ P + VG ++E +A
Sbjct: 145 MLNMGFYEDLVDILSHAPKDKSTWLFSATMPNAVARIARDFMHQPAEV-TVGTRNEAIAS 203
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
Y T A R + G +++F +TKRD +V+ L + ALHG
Sbjct: 204 VQHEY--YTVAGRDRYPALRRLADANPGLFSVIFCRTKRDTQKVAEKLIEDGYNAGALHG 261
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+ +N FR+ + +LVATDVAARG+D+ +V +IHY+LP++ ET+ HRSGRTG
Sbjct: 262 DLSQQQRDLVMNAFRKRQLQLLVATDVAARGIDVDDVTHVIHYQLPDETETYTHRSGRTG 321
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G ++++ T S++R +R++E+ +G FE P ++ E + + V
Sbjct: 322 RAGKSGVSMVILTRSEQRRIRAIEKIIGRPFEQKKLPDGMEICEIQLYHLANKIRSVEVN 381
Query: 240 -SVEFFTPTAQRLIEEKGTDALAAAL--AQLSGFSRPPSSRSLINHEQGWVTLQLTRDSA 296
S+E + P + + + D L + + S F S +N G + RDS
Sbjct: 382 PSIEAYLPAIEDVFKGMDRDTLIRKMISVEFSRFYDFYSKTRDLNPAAGAA--ESARDSG 439
Query: 297 FSRGFMSARSVMGF----LSDVYPTAADEIGKIHIIADDRVCIDTV-ILLYFYASVRLGL 351
+R F++ + G L D+ AA +G+ DD ++T +F +
Sbjct: 440 TTRFFINIGEMDGLDWMQLKDLL-KAATGLGR-----DDIYKVETKDSFSFFNTDSSMAP 493
Query: 352 FNTKSVIWLTYRFREL 367
+S+ +TY RE+
Sbjct: 494 LVMESIQGVTYEGREV 509
>gi|428770509|ref|YP_007162299.1| DEAD/DEAH box helicase [Cyanobacterium aponinum PCC 10605]
gi|428684788|gb|AFZ54255.1| DEAD/DEAH box helicase domain protein [Cyanobacterium aponinum PCC
10605]
Length = 491
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 154/272 (56%), Gaps = 10/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL P RQ++ FSATMP ++ L ++++++P+N QD
Sbjct: 158 MLSMGFIDDVKEILSQTPKSRQTICFSATMPKEIQYLVKEFMNDPINATGEKPQDTPSRI 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
+Y + + +TI L + G I+F +TKR A E++ L S + HG
Sbjct: 218 DQCVYMVPRGWSKIKTIQPILEIEDPQSG--IIFVRTKRTASELTTKLQEAGQSVDEYHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QRER + +R GK ++VATD+AARGLD+ ++ + +++LP++ ET++HR GRTG
Sbjct: 276 DLSQSQRERLIQRWRDGKIKLVVATDIAARGLDVSDLTHVFNFDLPDNTETYIHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP----VVEDVLESSAEQVVATLNG 235
RAGKEG AI + S RR +R +ER + + P V +E EQ+ +L G
Sbjct: 336 RAGKEGKAIALVEPSDRRFLRQIERRLNQTIRVENVPNRSTVEAKRMEKLTEQIKESLAG 395
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + F P + L E+ A+AAA Q+
Sbjct: 396 ---ERLASFLPLVKELHEDYDPTAIAAATLQI 424
>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 528
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 138/231 (59%), Gaps = 14/231 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ + RQ+MLFSATMP ++KLS KY++NP + + ++ E A
Sbjct: 155 MLDMGFIEDIEKILQQVNTNRQTMLFSATMPPPIRKLSNKYMNNPKQVTI--SKGEVTAP 212
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R I S+ I + I+F +TK+ E++ AL + +
Sbjct: 213 SINQVYFKVLEKNKLDSLCRVIDSETIDL------GIIFCRTKKGVAELTEALQARGYMA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD++Q QR+ + FR L+ATDVAARG+D+ NV +I+Y++P DPE++VHR
Sbjct: 267 DGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVAARGIDVENVSHVINYDIPQDPESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
GRTGRAG+EG A+ + T + + +RS+E ++ P VE+V+E
Sbjct: 327 IGRTGRAGREGVAVTLVTPREMKHLRSIEAEIKMTIPSQRIPSVEEVVEKQ 377
>gi|300856701|ref|YP_003781685.1| RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
Length = 525
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 177/339 (52%), Gaps = 23/339 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLA 59
ML +GF ED+E I++ RQ++LFSATMP +KKLS +Y+ N +I + N
Sbjct: 158 MLDMGFIEDIENIIKATNSDRQTLLFSATMPDQIKKLSSRYMKSNIKSIKIAKNT--LTV 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
+ K Y + L ++ V + I+F +TKR DE+ L + E +H
Sbjct: 216 DKTKQYYYEIKQKDRFESLCRILDV-DEPSSAIIFCKTKRGVDELVEGLQARGYNVEGMH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QR TL F++G LVATDVAARG+D+ NV +I+Y+LP D E++VHR GRT
Sbjct: 275 GDMGQNQRLNTLRKFKEGSLEFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRA KEG A + T + ++ +E+ K P V+D+ E+ + + + +
Sbjct: 335 GRANKEGIAYSLVTPREYILLKQIEKFTKSKIRRKEIPTVDDIYEAKYKNIEEQVKSIIS 394
Query: 239 E-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAF 297
E + + F P A L EE +AAAL ++ F + S ++++ +T+ D
Sbjct: 395 EDNYKNFIPIATELDEEYNLVDVAAALMKII-FDKELS----FDYKENSLTV----DEKD 445
Query: 298 SRGFMS--------ARSVMGFLSDVYPTAADEIGKIHII 328
R F+S R ++ F+S+ A EIG I I+
Sbjct: 446 VRLFLSIGRMDNLTPRKLLKFISETSSVEAYEIGDIDIL 484
>gi|348030292|ref|YP_004872978.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947635|gb|AEP30985.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 584
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 159/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVELIL + P +RQ+ LFSATMP +KK++++YL NP ++ + A
Sbjct: 162 MLRMGFIDDVELILSHAPAERQTALFSATMPDAIKKITKRYLKNPEHVKIESTVSS--AS 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ K L+ ++ V G I+F +TK E++ LT+ E L+G
Sbjct: 220 MIRQRYCQVAGHHKLEALTRIMEVEEFDG-MIIFVRTKTATVELADKLTARGHVVEPLNG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q+ RERT+ ++G +LVATDV ARGLD+ V +I+Y++P D E++VHR GRTG
Sbjct: 279 DIPQNSRERTVEKLKRGDIDILVATDVVARGLDVERVSHVINYDIPYDTESYVHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAG+ G AIL + ++R + ++E+ + E + P + + ES + + + +
Sbjct: 339 RAGRTGDAILFISHREKRLLFAIEKATKQRIENMEIPSISQLNESRLVRFKQSIIEAMSD 398
Query: 239 ESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
ES+E + P + ++E E D + AALA+++ P
Sbjct: 399 ESIESYIPIVESIMEETEASPDVIMAALAKVAQGDEP 435
>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 132/216 (61%), Gaps = 4/216 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV I LP + Q++LFSATM + L R+ L PL I +
Sbjct: 177 MLDLGFVEDVRAIAARLPVRHQTLLFSATMSPAISALGRQLLHKPLQI--APPEQAAPPP 234
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I+ I T A K L ++ A GG+T+VFT+TK+ AD ++ L T + + ALHG
Sbjct: 235 RIRQQVIFTPAARKAASLLAVLRREA-GGRTMVFTRTKQAADALARTLNTGGVTAAALHG 293
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D Q +R+RTL+ FR+G+ VLVATDV ARG+D+ +V L++++++P PET++HR GRT
Sbjct: 294 DHGQVRRDRTLDDFRRGRLLVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTA 353
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215
RAG+ GTA+ + ++R +R +ER G + + P
Sbjct: 354 RAGRRGTALSLCDPAERLKLRDIERQSGARITVIDP 389
>gi|347758173|ref|YP_004865735.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590691|gb|AEP09733.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 649
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 139/239 (58%), Gaps = 18/239 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +E I+ +P +RQ+M+FSAT+P ++ KLS +YL NP + + ++ A
Sbjct: 150 MLDMGFGIQIEKIIRTMPKERQTMMFSATIPPYISKLSAQYLKNPQRVSI--GEESTAAP 207
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
IK + T + K L + + + G I+F +TK AD ++ LT SEALHG
Sbjct: 208 KIKQELVHTNHSEKYNAL--VGQLDQREGSVIIFVKTKHGADRLARKLTQDDFRSEALHG 265
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R+R + FR K+ +LVATDVAARGLDIP+++ +++Y+LP E ++HR GRTG
Sbjct: 266 DLRQNKRDRVIRSFRDKKYRILVATDVAARGLDIPHIEHVVNYDLPQCAEDYIHRIGRTG 325
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
RAG EG A+ + TS +++ + ++PP D ES E NG P
Sbjct: 326 RAGAEGNAVCLLTSEDGGKWKAIHK-------LMNPPANGDKHESRDE------NGGRP 371
>gi|383755140|ref|YP_005434043.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381367192|dbj|BAL84020.1| putative DEAD-box ATP-dependent RNA helicase CshA [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 526
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 144/244 (59%), Gaps = 14/244 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P RQ++LFSATMP ++KLSR+Y+++P + + E
Sbjct: 160 MLDMGFIDDIENIIKQIPDGRQTLLFSATMPGPIEKLSRRYMEHPQRVTIT-------KE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ + I R L V + GK I+F +TKR D+++ +L + ++ L
Sbjct: 213 NLTVPLIDQLYYETREKFEGLCRVLDVEETGKLIIFCRTKRAVDDLTASLEARGYSAGGL 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+SQ QR+R + FR+G+ +L+ATDVAARG+DI ++ +I+Y++P D E++VHR GR
Sbjct: 273 HGDLSQIQRDRVMKRFREGRIDILIATDVAARGIDIDDITHVINYDIPQDHESYVHRIGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATL 233
TGRAG++G A+ + R +R + + K + P D+LE E++V TL
Sbjct: 333 TGRAGRKGVAMTFIEPKEYRQLRLIMKLAHTKIQRKELPTASDLLERQKDLVQERLVKTL 392
Query: 234 NGVH 237
H
Sbjct: 393 QQNH 396
>gi|397668007|ref|YP_006509544.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395131418|emb|CCD09686.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 589
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 161 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQYGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 338 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 374
>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
DSM 2375]
gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
2374]
gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
gi|222434510|gb|EEE41675.1| DEAD/DEAH box helicase [Methanobrevibacter smithii DSM 2375]
gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
2374]
Length = 429
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 157/270 (58%), Gaps = 6/270 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ++LFSATMP +K++++ Y P ++ + Q +
Sbjct: 159 MLDMGFREDIEKILRHTPKQRQTLLFSATMPKEIKRITKFYQKKPKHLKVA--QSQMTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y T K L+ LI VY +VF TK+ D V+ L + A+E +HG
Sbjct: 217 EITQYYFETKEKDKLENLTRLIDVYDVN-LGLVFCNTKKRVDWVAKNLRNRGYAAEGIHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q R++ +N FR G +L+ATDVAARG+D+PNV+++++Y++P +PE +VHR GRTG
Sbjct: 276 DMNQKSRDKVMNKFRNGNIEILIATDVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG G A + ++R++++ K + P +++ Q++ ++ N +
Sbjct: 336 RAGNMGYAFTFVAGKEIYSLRTIKKVTKSKIKQRKIPSYKEMESIKNTQLMNSVKNSIEK 395
Query: 239 ESVEFFTPTAQRLIEEK-GTDALAAALAQL 267
+++E + + +EE + +AAAL ++
Sbjct: 396 DNLEKYVKLVEGAMEEDFDSVDIAAALLKM 425
>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 524
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 177/337 (52%), Gaps = 19/337 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLA 59
ML +GF ED+E I++ P RQ++LFSATMP VK+L+ KY+ N I + N
Sbjct: 158 MLDMGFIEDIEEIIKASNPNRQTLLFSATMPDQVKRLASKYMSSNTKYITIAKNT--LTV 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
E K Y + L ++ V + I+F +TKR DE+ ++ + E +H
Sbjct: 216 EKTKQYYYEIKHKDRFESLCRILDV-DEPSSAIIFCKTKRGVDELVESMQARGYNVEGMH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QR TL F++G LVATDVAARG+D+ NV +I+Y+LP D E++VHR GRT
Sbjct: 275 GDMGQNQRLNTLRKFKEGSLDFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRA KEG A + T + ++ +E+ K + P ++++ E+ + + + V
Sbjct: 335 GRANKEGIAYSLVTPREYILLKQIEKFTKSKIKRKDIPTIDEIFEAKYKNIEEKIKKVIS 394
Query: 239 E-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS---SRSLINHEQGWVTLQLTRD 294
E + + F P A L EE +AA+L ++ F + S + I E V L
Sbjct: 395 ENNYKNFIPIATELDEEYNLVDVAASLMKII-FDKELSFDYKENSIGIEDNNVRL----- 448
Query: 295 SAFSRGFM---SARSVMGFLSDVYPTAADEIGKIHII 328
FS G M + R ++ F+++ A EIG I I+
Sbjct: 449 -FFSIGRMDNITPRKLIKFINETSSVEAYEIGDIDIL 484
>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase [Chloroflexus aurantiacus J-10-fl]
gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase [Chloroflexus sp. Y-400-fl]
gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
J-10-fl]
gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
Length = 552
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E++E IL+ P +RQ+ LFSAT+P V+ L+ +Y P+ + + Q
Sbjct: 155 MLDMGFAEELEAILQLTPTERQTALFSATLPPAVQNLTLRYTRQPVRVSIAAEQ--LTTP 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ A K L ++ IVF +T+++AD++ L A+E+LHG
Sbjct: 213 RIRQTYYEVLARDKLDALCRVLDAEMPQ-LAIVFCRTRQEADDIGERLQGRGYAAESLHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ R+R + FR+G+ VLVATDVAARGLDI V +I+Y++P DPE++VHR GRTG
Sbjct: 272 DLSQAARDRVMRRFREGQLDVLVATDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+EG AI T +RR ++ +ER + E P + DV
Sbjct: 332 RAGREGVAITFITPRERRMLQIIERVTRTRIERCQMPTLADV 373
>gi|350564547|ref|ZP_08933364.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
gi|349777566|gb|EGZ31929.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
Length = 609
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE +LE P RQ LFSATMP V K++ ++L+NP ++++ Q A
Sbjct: 163 MLRMGFIDDVEWVLEQTPQDRQIALFSATMPKEVHKIASRHLNNP--VEVIIKQKTGTAS 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ ++ G I+F +TK E++ L + A+ AL+G
Sbjct: 221 TITQSYWLVSGLHKLDALTRILEATEFDG-MIIFVRTKTATIELAEKLEARGYAAAALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+ RER ++ ++GK +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIAQNHRERIVDQLKKGKIDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL +RR ++ +ER K + ++ P +D+ + E+ A + + +
Sbjct: 340 RAGRSGNAILFVAPRERRLLQQIERATNKKIDMLTLPSTQDINDQRVEKFKARITDALEQ 399
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQL 267
E +EF+ + L + AL AAALA+L
Sbjct: 400 EGLEFYQQMIEDLQQASNVPALEIAAALAKL 430
>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
Length = 515
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ++ LP KRQ LFSATMP+ +++++ YL +P +I + Q A
Sbjct: 163 MLRMGFIDDVEWVMSQLPEKRQIALFSATMPTAIRRIASDYLQDPQHITV--TQKTVTAT 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + SK L+ ++ V G I+F +TK E++ L + A+ AL+G
Sbjct: 221 SIRQRVWMISGASKLDGLTRILEVEDFDG-LIIFARTKIATTELADKLQARGFAAAALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RE+ ++ ++G+ ++VATDVAARGLD+ + +++Y++P DPE +VHR GRTG
Sbjct: 280 DMAQSAREQVISQLKKGRLDIVVATDVAARGLDVDRITHVVNYDIPQDPEAYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
RAG++G AIL + ++R +R +ER G E + P DV ++ AE++
Sbjct: 340 RAGRKGEAILFAANREQRLLRMIERTTGQPIELMRLPTASDVADAKAEKI 389
>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 572
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + +++RK+ +P+ + +V + E
Sbjct: 172 MLNMGFLEDMETILSQLPEERQTVMFSATMPPAIMEIARKFQQDPVTVKVV--KKELTVP 229
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y SK ++ L+ +YA ++ F TK+ DE+ AL +E LHG
Sbjct: 230 KVTQYYYEVKPKSKVEVMCRLLDMYAPK-LSVAFCNTKKQVDELVQALQGRGYFAEGLHG 288
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR GK +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 289 DLKQIQRDRVMGSFRNGKTEILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTG 348
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+EG A + +R ++R K + P + DV ++++ T+
Sbjct: 349 RAGREGIAFSFVVGKEVYKLRDIQRYCKTKIVPQAIPSLNDVTAIKVDKILETV 402
>gi|411008888|ref|ZP_11385217.1| ATP-dependent RNA helicase [Aeromonas aquariorum AAK1]
Length = 589
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I++ P RQ LFSATMP ++++++K+L P I + A
Sbjct: 121 MLRMGFIDDVDWIMDQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 178
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V +VF +TK A+E++ L + A EALHG
Sbjct: 179 TIRQRYWQVTGLHKLDAMTRLLEVEPYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 237
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 238 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 297
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 298 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 357
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 358 ---EELEIYVNLVNELIEEDSAD 377
>gi|421765661|ref|ZP_16202442.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
gi|407625746|gb|EKF52434.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
Length = 543
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 152/272 (55%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ P +RQ++LFSATMP+ +KK+ K++ NP +I + E A+
Sbjct: 155 MLNMGFLEDIEFIIGKTPSERQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I Y + + K IL+ L+ V + IVF +TKR DE++ L +E +HG
Sbjct: 213 RIDQYYVKSKEFEKFDILTRLLDV-ERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q++R R L F+ G +LVATDVAARGLDI V + +Y++ D E++VHR GRTG
Sbjct: 272 DLDQNKRLRVLRDFKGGHLDILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN----- 234
RAGK G ++ + ++ +R++E+ + + + PP ED ++S + +
Sbjct: 332 RAGKSGRSVTFVSYNEMGYLRAIEKLTKKEMKSLRPPTKEDAYQASLSVAMDEIKRDLQE 391
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQ 266
G + F A++L+ E L A L Q
Sbjct: 392 GSLKGKLTKFDADAEQLMAEYDVKELVAMLIQ 423
>gi|410452638|ref|ZP_11306602.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
gi|409934120|gb|EKN71036.1| ATP-dependent RNA helicase [Bacillus bataviensis LMG 21833]
Length = 496
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 141/231 (61%), Gaps = 4/231 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + P +RQ++LFSATMP +++++ +++ +P + + E
Sbjct: 156 MLNMGFIEDIESILASTPAERQTLLFSATMPGPIQRMAERFMKDPQIVRV--KTKELTMP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ Y + +K +L+ L+ + + IVF +TKR DE+S ALT +E +HG
Sbjct: 214 SIEQYYLEVQERNKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALTLRGYTAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRMSVLRKFKEGTIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
RAGK+G A+ T ++ + +ER K E + P +++ LE + VV
Sbjct: 333 RAGKKGIALTFITPREKSYLAVVERTTKHKMEKMKAPTLDEALEGQQKAVV 383
>gi|403508500|ref|YP_006640138.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402803335|gb|AFR10745.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 513
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 121/193 (62%), Gaps = 7/193 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE---- 56
ML +GF D+E IL P +RQ+MLFSATMPS + LSR YL P ++ G+ +E
Sbjct: 151 MLDLGFLPDIERILTKTPAERQTMLFSATMPSEIVTLSRNYLTRPTHV-RAGDDNEIDGS 209
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE 115
+ I +A T K +L+ L+ G +++VF QTKR D V+ L S A+
Sbjct: 210 AITSRIAQHAFRTHQMDKPEMLARLLQAEDHG-QSMVFCQTKRACDRVASDLKSRGFAAA 268
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
A+HGD+ Q QRER L FR GK +LVATDVAARGLD+ +V +++YE P D +T+ HR
Sbjct: 269 AVHGDLGQSQRERALRAFRNGKINILVATDVAARGLDVDDVTHVVNYETPEDEKTYTHRI 328
Query: 176 GRTGRAGKEGTAI 188
GRTGRAG+ GTA+
Sbjct: 329 GRTGRAGRTGTAV 341
>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
Length = 617
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 156/280 (55%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ KYL P+++ + E
Sbjct: 161 MLKMGFIDDIEWILEHTPKQRQLALFSATMPEQIKRVANKYLTEPVHVKIAATT--ATVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V + G I+F +T+ E++ L + AS LHG
Sbjct: 219 TIEQRFVQVSQHNKLEALVRVLEVESTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++G +L+ATDVAARGLD+ + +I+Y++P D E +VHR GRT
Sbjct: 278 DMNQQARERAVDQLKRGSLDILIATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTD 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL T + R +R++ER + + P E V E EQV ++
Sbjct: 338 RAGRSGMAILFVTHREMRMLRTIERATKSRISPMDVPSPESVTERRLSRLGEQVAEIISK 397
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+S++F +L + E TD LAAAL Q RP
Sbjct: 398 ---DSLDFMKGAVAQLCQQLEVDTDILAAALLQQVQKERP 434
>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
Length = 556
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ++E LP +RQ++LFSATMP + +++ +Y NP++I Q
Sbjct: 157 MLNMGFREDIETVIEALPQQRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQIN--TP 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ +K+ IL LI++ ++F TK+ DE++ L S + ALHG
Sbjct: 215 KIEQVYYVCPKEAKKEILMQLISM-QNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHG 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R ++ F++GK +LVATDVAARG+D+ ++D++ +Y+LP + E +VHR GRTG
Sbjct: 274 DMKQEMRTGVMDNFKKGKINILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAGKEG A+ + T+ Q+ +R LER K P +E+V
Sbjct: 334 RAGKEGLAVTLITARQKYALRDLERTTRSKLTQKPLPSLEEV 375
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 124/209 (59%), Gaps = 22/209 (10%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL P ++Q++LFSATMP ++KL YL + VG
Sbjct: 166 MLDMGFIEDIEEILSKTPREKQTLLFSATMPYEIRKLIDNYLKSGYKTIKVGKN------ 219
Query: 61 GIKLYAISTTATSKRTIL---------SDLITVYAKGGKTIVFTQTKRDADEVSLALTS- 110
+ T +R I + + +G TIVF +TKRDA E+ L
Sbjct: 220 ------LITPKVHQRIIFVKSEDKLKALEKLLKEHQGTSTIVFVKTKRDAAEIEKELQKR 273
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
I + A+HGD+SQ QRE + F++GK LVATDVAARG+DI +V L+I+YELP +PE+
Sbjct: 274 SINARAIHGDLSQRQRENVMKAFKEGKVKTLVATDVAARGIDIKDVGLVINYELPENPES 333
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTV 199
+VHR GRTGRAG+EGTAI + +++R +
Sbjct: 334 YVHRIGRTGRAGREGTAISLVADNEKRRI 362
>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
14266]
Length = 721
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 143/225 (63%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P +Q LFSATMPS +++LS++Y+++P I + + +
Sbjct: 228 MLNMGFQEDVERILADTPEDKQVALFSATMPSGIRRLSKQYMNDPHEIQV--KSETRTNT 285
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +E++ L + + A++G
Sbjct: 286 NITQRFLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKFETEELAEKLRARGFNAAAING 344
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ + G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 345 DIAQQQRERTVEQLKDGRLDILVATDVAARGLDVERISHVLNYDIPSDTESYVHRIGRTG 404
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T +RR +R++ER + + P V++V ES
Sbjct: 405 RAGRSGEAILFVTPRERRFLRNIERATNAPLQEMELPTVDEVNES 449
>gi|423197144|ref|ZP_17183727.1| hypothetical protein HMPREF1171_01759 [Aeromonas hydrophila SSU]
gi|404631894|gb|EKB28525.1| hypothetical protein HMPREF1171_01759 [Aeromonas hydrophila SSU]
Length = 631
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I++ P RQ LFSATMP ++++++K+L P I + A
Sbjct: 163 MLRMGFIDDVDWIMDQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V +VF +TK A+E++ L + A EALHG
Sbjct: 221 TIRQRYWQVTGLHKLDAMTRLLEVEPYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 280 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 340 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 399
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 400 ---EELEIYVNLVNELIEEDSAD 419
>gi|350272022|ref|YP_004883330.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596864|dbj|BAL00825.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 558
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 164/272 (60%), Gaps = 7/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E+IL+++P RQ +LFSAT+P + +++++ +P+ I++ N+++ E
Sbjct: 158 MLNMGFREDIEVILQDVPADRQIVLFSATIPEEILTIAQQFQRSPIRIEI--NREQITLE 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L+ L+ Y + + ++F+ TK DE++ L++ + E LHG
Sbjct: 216 NIRQVYVEVPPRQKPEALT-LLLHYYQPRRALIFSNTKTMVDELTERLSAAGFSVEGLHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR +NGFR+G+ ++LVATDVAARG+D+ ++D +I++++P +P+++VHR GRTG
Sbjct: 275 DMKQLQRTTVMNGFRKGRVSILVATDVAARGIDVSDLDYVINFDIPKEPDSYVHRIGRTG 334
Query: 180 RAGKEGTAI-LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVH 237
RAG+ GTAI L +Q ++ L + + P V D+ ++ E+ + L +
Sbjct: 335 RAGRAGTAITLCCGRAQVLQLQRLAARTRSGIDAIPLPRVSDIEQAHRERTLKDLERAME 394
Query: 238 PESVEFFTPTAQRLIEEKGT-DALAAALAQLS 268
+ + F T + LI T + +AA L LS
Sbjct: 395 SDPLPFHTEMVEELIRRGHTPERIAATLMGLS 426
>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 583
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 140/226 (61%), Gaps = 5/226 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I LP +RQ++LFSATMP +K+L+ K L P + + +D E
Sbjct: 156 MLDMGFLEDIEEIFTYLPKERQTLLFSATMPEPIKRLASKILHEPKFVSIT-PKDHTTNE 214
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I +LY + ++ L + + K+IVF +TK++ D +S L ++ A++ LH
Sbjct: 215 DIEQLYYVINEYERDDAMIRLLDALEPE--KSIVFCRTKKEVDRLSTQLMAVGYAAKGLH 272
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q+QRE + FR + +LVATDVAARGL++ ++ + +Y +P DPE++VHR GRT
Sbjct: 273 GDMEQNQRESVIKAFRSSQIEILVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRT 332
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
GRAGK+GTAI + T + +++ + + VG K E P + DV E+
Sbjct: 333 GRAGKKGTAITLVTPIEFHSMQRIGKKVGSKIEHRIVPNLRDVKEN 378
>gi|334705332|ref|ZP_08521198.1| ATP-dependent RNA helicase [Aeromonas caviae Ae398]
Length = 613
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 148/263 (56%), Gaps = 11/263 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ I++ P RQ LFSATMP ++++++K+L P I + A
Sbjct: 144 MLRMGFIDDVDWIMDQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKT--ATAT 201
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ T K ++ L+ V + +VF +TK A+E++ L + A EALHG
Sbjct: 202 TIRQRYWQVTGLHKLDAMTRLLEVESYEA-LLVFVRTKNAAEELAGKLAARGHACEALHG 260
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ RQG+ +L+ATDV ARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 261 DIPQKLRERTVDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTG 320
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL +RR +R++E E + P ED+ L E++ T+ G
Sbjct: 321 RAGRKGEAILFVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMG 380
Query: 236 VHPESVEFFTPTAQRLIEEKGTD 258
E +E + LIEE D
Sbjct: 381 ---EELEIYHNLVNELIEEDSAD 400
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 158/281 (56%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ P RQ++LFSATMP +KK+ K++ +P + + E +
Sbjct: 155 MLNMGFLDDIEAIIDQTPADRQTLLFSATMPPEIKKIGVKFMTDPTMVRIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ LI V TIVF +TKR DE+S L + + A +HG
Sbjct: 213 LVDQYYVKARDYEKFDIMTRLIDV-QDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R + + F+ G+ +LVATDVAARGLDI V + +Y++P+DP+++VHR GRTG
Sbjct: 272 DLSQDRRTKIMKKFKHGELDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG G ++ T ++ +R +E+ + + PP E+ + QV + N +
Sbjct: 332 RAGHHGVSLTFVTPNEMDYLREIEKLTRVRMLPLKPPTAEEAFKG---QVASAFNDIDEL 388
Query: 239 ---ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
+S E + A++L+ L AAL L+ ++ P+S
Sbjct: 389 ISQDSTERYQEAAEKLLATHDATDLVAAL--LNEMTKEPAS 427
>gi|334340505|ref|YP_004545485.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334091859|gb|AEG60199.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 532
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 153/271 (56%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL + PP RQ++LFSATMP + +L+R+YL P + V + + +
Sbjct: 162 MLDMGFIEDIEEILRHTPPVRQTLLFSATMPDEITRLARQYLTEP-KLVTVSKTNLTVPQ 220
Query: 61 GIKLYAISTTATSKRTILSDL-ITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++Y + + L IT A+G IVF +TKR D++ L + + +LH
Sbjct: 221 IEQVYYEAPEKHKLEALCRLLDITDIAQG---IVFCRTKRGVDDLVSGLQARGYTAVSLH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR + FR G+ +LVATDVAARGLDI V +I+Y++P DPE +VHR GRT
Sbjct: 278 GDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRAG+ G AI + T + R +R +E + + P + DV+E E + L +
Sbjct: 338 GRAGRSGVAITIITPREYRQLRLIENITKTRIKRERLPSIADVVERQKEGIKDRLIRIME 397
Query: 239 ES-VEFFTPTAQRLIEEKGTDALAAALAQLS 268
E + ++ L++E +AAA +LS
Sbjct: 398 EGKLGYYRSVIDALVDEYDPMDIAAAALKLS 428
>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
11293]
Length = 542
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/394 (31%), Positives = 201/394 (51%), Gaps = 26/394 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +++E IL++ P ++++LFSATMP +KKL+ Y++ +L+ + E+L
Sbjct: 160 MLNMGFIDEMEEILKHTNPDKRTLLFSATMPDKIKKLANDYMEG---YELIAVEKEQLTT 216
Query: 61 GI--KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEV-SLALTSIIASEAL 117
+ ++Y A+ K L +I + +VF +TK D D V + L + L
Sbjct: 217 NLTEQIY-FEVKASDKFEALCRIIDI-EDSFYGLVFCRTKNDVDTVVNHLLDRGYDAAPL 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDISQ QRERTL F++ +LVATDVAARG+D+ N+ +I+Y LP DPE +VHR GR
Sbjct: 275 HGDISQAQRERTLGKFKRQNINILVATDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGR 334
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG EGTAI T S+ + + + + + P V D++++ +++ L +
Sbjct: 335 TGRAGNEGTAITFITPSEYKRLMFIRKITKTDIKKSQLPKVADIIDAKRKKIDEDLGAIF 394
Query: 238 PESV-EFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTR 293
+ + + + A+R +EE G + LAA L+ P+S I +G Q+
Sbjct: 395 TKEIDQSYYDWAKRWLEESGKSPSQILAALLSLSFNDDLNPNSYGEIAEVRGGDRSQIDH 454
Query: 294 DSAFSRGF--------MSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYA 345
+R F ++ R ++ L+ P +IG I I+ + V + +F A
Sbjct: 455 HGT-ARLFVALGKKDRITPRQLIDLLTSRSPVRPKQIGDIQIMEN----FSFVTVPFFLA 509
Query: 346 SVRLGLFNTKSVIWLTYRFRELFLIFRRRLQRSC 379
+ F +K L R + F +RR R+
Sbjct: 510 EKIVAGFKSKGKKPLVTRAKS-FEGGKRRKHRTV 542
>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
symbiosum WAL-14673]
Length = 552
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 159/274 (58%), Gaps = 11/274 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + ++++K+ +P + +V + E
Sbjct: 159 MLNMGFLEDMETILSELPEERQTVMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +Y +IVF TKR D++ L +E LHG
Sbjct: 217 KVTQYYYEVKPKTKVEVMCRLLDMYDPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR G+ +L+ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQMQRDRVMNSFRNGRTDILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVH 237
RAG+EG A + + +R ++R CK + + P+ + DV E+++ ++ +
Sbjct: 336 RAGREGKAFSLVVGREVYKLREIQR--YCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEII 393
Query: 238 PES--VEFFTPTAQRLIEEKGTD-ALAAALAQLS 268
+S + +R++EE T LAAAL ++S
Sbjct: 394 RDSDLDKIINIVEKRVLEEDYTTLDLAAALLKMS 427
>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 587
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+++P Q LFSATMP+ ++KL++ YL +P+NI + + K
Sbjct: 163 MLNMGFIEDIETILQSVPDTAQRALFSATMPTAIRKLAKTYLTDPVNIRIAPVEQAK--A 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
I+ A +K T L+ L+ V + + +VF +T++D +V+ L + L G
Sbjct: 221 NIRQRAWKVMGMTKMTALTRLLEV-TEYQRALVFVRTRQDTMDVAELLQRQGFRAAPLSG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRE+T+ R G VLVATDV ARGLD+P + +I+Y+LP+D E++VHR GRTG
Sbjct: 280 DLNQAQREQTVTQLRSGHIKVLVATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL + +R +R E+ E+ P E++
Sbjct: 340 RAGRSGEAILFYRGKERHLLRHYEKLTNGSIEYFDVPSAEEL 381
>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|355627088|ref|ZP_09049059.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
WAL-14163]
gi|354820528|gb|EHF04943.1| hypothetical protein HMPREF1020_03138 [Clostridium sp. 7_3_54FAA]
Length = 552
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 159/274 (58%), Gaps = 11/274 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL LP +RQ+++FSATMP + ++++K+ +P + +V + E
Sbjct: 159 MLNMGFLEDMETILSELPEERQTVMFSATMPPAIAEIAKKFQKDPEIVKVV--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y +K ++ L+ +Y +IVF TKR D++ L +E LHG
Sbjct: 217 KVTQYYYEVKPKTKVEVMCRLLDMYDPK-LSIVFCNTKRQVDDLVQELQGRGYFAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR G+ +L+ATDVAARG+D+ +V+ + +Y++P D E +VHR GRTG
Sbjct: 276 DLKQMQRDRVMNSFRNGRTDILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNGVH 237
RAG+EG A + + +R ++R CK + + P+ + DV E+++ ++ +
Sbjct: 336 RAGREGKAFSLVVGREVYKLREIQR--YCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEII 393
Query: 238 PES--VEFFTPTAQRLIEEKGTD-ALAAALAQLS 268
+S + +R++EE T LAAAL ++S
Sbjct: 394 RDSDLDKIINIVEKRVLEEDYTTLDLAAALLKMS 427
>gi|431208676|ref|ZP_19500889.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430570682|gb|ELB09622.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
Length = 503
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|392406780|ref|YP_006443388.1| DNA/RNA helicase [Anaerobaculum mobile DSM 13181]
gi|390619916|gb|AFM21063.1| DNA/RNA helicase, superfamily II [Anaerobaculum mobile DSM 13181]
Length = 496
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 141/224 (62%), Gaps = 8/224 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+E++E IL+ LP K+++ LFSATMP V +S+KYL+ PL IDLV ++++
Sbjct: 160 MLDMGFKEELEAILQALPKKKRTWLFSATMPEEVMTISKKYLNEPLCIDLVEDENQHSDI 219
Query: 61 GIKLYAISTTATSKRTILSDLITV--YAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
++Y + +R L+ V + K ++F +TK + E++ L++ + L
Sbjct: 220 EHEIYTVP-----QRFAFEGLVNVLLWESPTKGLIFCRTKAETMEIAKKLSAKGFKALCL 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
+GD++Q +R +L F+ G+ ++LVAT+VAARGLD+P VD ++ Y LP+D ETF+HRSGR
Sbjct: 275 NGDMTQRERSASLGAFKSGQTSLLVATNVAARGLDVPGVDYVVQYGLPDDLETFIHRSGR 334
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
TGRAG G +L+ T + R ++ + K ++++ P D+
Sbjct: 335 TGRAGAHGKDVLVLTPQETRHIKQMIGKTKIKAKWLTVPNRNDI 378
>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
Length = 506
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 148/266 (55%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++N+P +RQ++LFSATMP ++ + K++ P + + E +
Sbjct: 164 MLDMGFLEDIEAIIKNVPEERQTLLFSATMPKAIRSIGEKFMHEPQVVKIKAK--ELTTD 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ ++ V A TIVF +TKR DE+S L + + A +HG
Sbjct: 222 LVDQYFVKAREYEKFDIMTRILDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 281 DLTQQRRMNILKKFKEGRLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG G ++ T ++ +R +ER + E + PP ++ + + V
Sbjct: 341 RAGHHGISVTFVTPNEMEYLRVIERLTKKRMEPLRPPTEKEAFIGQISSALGDIKDLVEK 400
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
E + A L+E+ L AAL
Sbjct: 401 TETEKYEKQANELLEQYDAVELVAAL 426
>gi|424869804|ref|ZP_18293485.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
gi|402935190|gb|EJX54460.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R497]
Length = 501
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 594
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL-VGNQ--DEK 57
ML +GF+ED+ IL+ P +R + LFSATMP V+++++ YL NP I NQ D
Sbjct: 158 MLNMGFKEDLNFILDETPAERNTYLFSATMPREVERIAKNYLRNPQEISTGKKNQGADTV 217
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
E ++ A T R ++ +YA I+FT+TK DA E++ L I +A
Sbjct: 218 THEYYQVLARDCYETLHR-VIDCAPDMYA-----IIFTRTKMDAREIARKLQKDGIDCDA 271
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ QR+ ++ FR + VLVATDVAARGLD+ N+ +I+Y LP D E++ HRSG
Sbjct: 272 LHGDLSQAQRDDVMDRFRAKRLKVLVATDVAARGLDVDNLTHVINYNLPEDVESYTHRSG 331
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RTGRAG+EG ++ + S ++ +R +E + KF++ P E+V
Sbjct: 332 RTGRAGREGISVAIINSKEKGKLRRIENILKKKFQYKEVPGGEEV 376
>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|406579294|ref|ZP_11054526.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406581588|ref|ZP_11056725.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584027|ref|ZP_11059065.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406589825|ref|ZP_11064245.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410938072|ref|ZP_11369930.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|424789110|ref|ZP_18215819.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|424953765|ref|ZP_18368708.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|424962400|ref|ZP_18376756.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|424963599|ref|ZP_18377803.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|424970725|ref|ZP_18384213.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|424978089|ref|ZP_18391038.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|425038208|ref|ZP_18442830.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|425058609|ref|ZP_18461987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|425060636|ref|ZP_18463922.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|427397059|ref|ZP_18889685.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430820898|ref|ZP_19439518.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430823396|ref|ZP_19441967.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430826317|ref|ZP_19444503.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430828899|ref|ZP_19447010.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430834757|ref|ZP_19452759.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430836494|ref|ZP_19454473.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430839412|ref|ZP_19457353.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430843175|ref|ZP_19461076.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430850821|ref|ZP_19468578.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430853175|ref|ZP_19470905.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430858894|ref|ZP_19476513.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430861435|ref|ZP_19478942.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430866428|ref|ZP_19481705.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430892938|ref|ZP_19484559.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430952632|ref|ZP_19486438.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431000766|ref|ZP_19488247.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431234137|ref|ZP_19502906.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431256501|ref|ZP_19504856.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431303424|ref|ZP_19508271.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|431380394|ref|ZP_19510775.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431441111|ref|ZP_19513326.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431506774|ref|ZP_19515600.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|431725207|ref|ZP_19525416.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431744090|ref|ZP_19532962.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|431747114|ref|ZP_19535916.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|431760196|ref|ZP_19548798.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|431765027|ref|ZP_19553551.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
gi|402922578|gb|EJX42943.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
V689]
gi|402938304|gb|EJX57320.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R494]
gi|402940682|gb|EJX59477.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1986]
gi|402948694|gb|EJX66809.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1190]
gi|402960765|gb|EJX77866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1139]
gi|402963120|gb|EJX80012.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1123]
gi|403019904|gb|EJY32478.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 513]
gi|403038013|gb|EJY49253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 504]
gi|403042418|gb|EJY53373.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 503]
gi|404455599|gb|EKA02443.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404459354|gb|EKA05720.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404464924|gb|EKA10437.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404470265|gb|EKA14916.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410733711|gb|EKQ75634.1| DEAD/DEAH box helicase [Enterococcus sp. GMD5E]
gi|425722385|gb|EKU85280.1| hypothetical protein HMPREF9307_01861 [Enterococcus durans
FB129-CNAB-4]
gi|430439035|gb|ELA49418.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430442109|gb|ELA52157.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430445197|gb|ELA54971.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430482561|gb|ELA59676.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430484826|gb|ELA61773.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430488294|gb|ELA64976.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430490870|gb|ELA67366.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430497924|gb|ELA73941.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430535180|gb|ELA75603.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430540997|gb|ELA81174.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430544740|gb|ELA84762.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549900|gb|ELA89710.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430551656|gb|ELA91407.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430555404|gb|ELA94942.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430557231|gb|ELA96699.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430562425|gb|ELB01657.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430573163|gb|ELB11993.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430577603|gb|ELB16190.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430580065|gb|ELB18545.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582262|gb|ELB20689.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430586467|gb|ELB24719.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430587161|gb|ELB25394.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430595854|gb|ELB33732.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430605718|gb|ELB43100.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430607222|gb|ELB44549.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|430624005|gb|ELB60656.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430629510|gb|ELB65910.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 503
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|383767838|ref|YP_005446821.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
gi|381388108|dbj|BAM04924.1| ATP-dependent RNA helicase DeaD [Phycisphaera mikurensis NBRC
102666]
Length = 693
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 142/248 (57%), Gaps = 7/248 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE +L+ +P Q LFSATMP+ +K++++ L +P +I G K AE
Sbjct: 225 MLRMGFIEDVEYVLDEIPDAAQVALFSATMPAQIKRIAQSKLKDPQHIRTAGKT--KTAE 282
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
++ K L+ ++ +VF +T+ EV+ L + A+EAL G
Sbjct: 283 TVRQRYAYVPGRRKINALTRVLDAEPHEA-VLVFVRTRNACTEVADQLQARGHAAEALSG 341
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++ Q QRER + + G+ V+VATDVAARGLD+ V +I+Y++P DPE ++HR GRTG
Sbjct: 342 EVPQRQRERIVESLKDGRIDVVVATDVAARGLDVERVGHVINYDMPTDPEAYIHRIGRTG 401
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV--- 236
RAG+ G AIL T ++R + LER G E + PP +D+ + + +A ++
Sbjct: 402 RAGRSGEAILFVTPREKRMLGELERITGQAIEEMQPPSDKDIRDLRVSRFLAAVDAQPEE 461
Query: 237 HPESVEFF 244
PE+V FF
Sbjct: 462 QPEAVAFF 469
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 157/276 (56%), Gaps = 9/276 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +RQ++LFSATMP ++KLS KY+++P + + ++ E A
Sbjct: 155 MLDMGFIEDIEKIIQVSSEERQTLLFSATMPPPIRKLSNKYMNSPEQVTI--SKSEVTAP 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I +K L LI I+F +TK+ E++ AL + ++ LHG
Sbjct: 213 SINQVYYKVLEKNKLDSLCRLID-SENTDLGIIFCRTKKGVSELAEALQARGYRADGLHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QR+ + FR L+ATDVAARG+D+ NV +++Y++P DPE++VHR GRTG
Sbjct: 272 DLTQSQRDSVMKKFRDSSIDFLIATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE----QVVATLNG 235
RAG+EG A+ + T + + +RS+E ++ K + P VE+V+E + QV+ +
Sbjct: 332 RAGREGIALTLVTPREMKHLRSIENEIKMKIPSQNLPSVEEVIEKQQDVWKSQVIDMIEN 391
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271
E V + L++ + + AL +L+ +S
Sbjct: 392 -DDEGVSHYDAIVTDLLDHYQPEKVVTALMKLAFYS 426
>gi|392988049|ref|YP_006486642.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392335469|gb|AFM69751.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 503
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 155/280 (55%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ +P ++ + E A+
Sbjct: 155 MLNMGFLEDIENIISKVPEERQTLLFSATMPPAIKNIGVKFMKSPTHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKNGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ A L
Sbjct: 332 RAGKGGMSVTFVTPNEMSYLHVIENLTKKRMATLRPPTEKEAFKGQLGAAVEQIEAKL-- 389
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
++ + TA +L+EE L A L L ++ PS
Sbjct: 390 -EENGLDKYLQTADKLLEEYSAQDLVALL--LKTTAKDPS 426
>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 530
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 112/337 (33%), Positives = 176/337 (52%), Gaps = 17/337 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D++ +L+ LP +RQS+LFSATMP ++KL+++++ P ++V + A
Sbjct: 158 MLNMGFIDDIQAVLDTLPAERQSLLFSATMPMQIRKLAQQHM-KPDVKNIVIAKSTLTAT 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEAL 117
+ + + L ++ V + I+F +TKR DE+ + S I+ E +
Sbjct: 217 LTEQFYFEVKHRDRFETLCRILDV-DEPESAIIFCRTKRGVDELVENMQSRGYIV--EGM 273
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+ Q+QR+ TL FR G LVATDVAARG+DI N+ +I+YELP D E++VHR GR
Sbjct: 274 HGDMGQNQRQNTLKKFRDGNLDFLVATDVAARGIDIENISHVINYELPEDAESYVHRIGR 333
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GV 236
TGRA + G A + T + ++ +ER + P VED+ E + V+ + +
Sbjct: 334 TGRANRTGIAYSLVTPREYIILKQIERVTHGHIKRKEIPTVEDIYEVKYKNVLTKVKEEL 393
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAALAQLS-----GFSRPPSSRSL-INHEQGWVTLQ 290
E F P A L +E +AAAL ++S F S ++ + G L
Sbjct: 394 EKNDFEKFKPLASELDDEYNLVDVAAALLKISFENELNFDYASSEKAREVRQSAGETRLF 453
Query: 291 LTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
L +A ++ R ++ FL D +EIG I I
Sbjct: 454 L---NAGRMDKVTPRDILRFLCDNSGFTRNEIGHIDI 487
>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 533
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 142/233 (60%), Gaps = 14/233 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL PP RQ++LFSAT+P + +L+ KY+ P+++ + N + A
Sbjct: 162 MLDMGFIDDIESILNATPPSRQTLLFSATIPGPIARLAEKYMRTPVHVSI--NPEYVAAP 219
Query: 61 GI-----KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +L I R + ++ + + I+F +TKR DE++ AL S ++
Sbjct: 220 DIWQVYYELRNIDHLEALCRILDAEAVE------RAIIFCRTKRRVDELAEALRSRGYSA 273
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ +HGD+ Q+QR R + FR+G+ +LVATDVAARG+D+ N+ +I+Y+ P DPE++VHR
Sbjct: 274 DHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAARGIDVQNISHVINYDCPQDPESYVHR 333
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
GRTGRAG+ GTAI + + +R+++R V + E P + DV++ E
Sbjct: 334 IGRTGRAGRTGTAITLVYPKELPLLRTIQRLVKVRIERHPIPSLADVVDRRME 386
>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383327538|ref|YP_005353422.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867363|ref|YP_006374786.1| DEAD/DEAH box helicase [Enterococcus faecium DO]
gi|415892439|ref|ZP_11549927.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|416131873|ref|ZP_11597781.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|424795449|ref|ZP_18221304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|424819380|ref|ZP_18244487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|424856321|ref|ZP_18280560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|424949231|ref|ZP_18364921.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|424956289|ref|ZP_18371077.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|424967919|ref|ZP_18381589.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|424976047|ref|ZP_18389165.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|424981969|ref|ZP_18394659.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|424984734|ref|ZP_18397253.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|424987723|ref|ZP_18400084.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|424990961|ref|ZP_18403147.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|424995504|ref|ZP_18407380.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|424997413|ref|ZP_18409175.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|425000503|ref|ZP_18412062.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|425003235|ref|ZP_18414612.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|425006604|ref|ZP_18417774.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|425011167|ref|ZP_18422079.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|425013771|ref|ZP_18424487.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|425017560|ref|ZP_18428061.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|425022464|ref|ZP_18432645.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|425030171|ref|ZP_18435374.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|425033448|ref|ZP_18438416.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|425034930|ref|ZP_18439786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|425040930|ref|ZP_18445364.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|425044373|ref|ZP_18448536.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|425047569|ref|ZP_18451517.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|425053412|ref|ZP_18456957.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|430831942|ref|ZP_19449990.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430847435|ref|ZP_19465272.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430855628|ref|ZP_19473336.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431544298|ref|ZP_19518594.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431749300|ref|ZP_19538042.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431755816|ref|ZP_19544461.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431767952|ref|ZP_19556395.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431769544|ref|ZP_19557952.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431773402|ref|ZP_19561727.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431776500|ref|ZP_19564761.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779582|ref|ZP_19567775.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431782613|ref|ZP_19570746.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784440|ref|ZP_19572479.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364093335|gb|EHM35615.1| cold-shock deAd box protein a [Enterococcus faecium E4453]
gi|364093511|gb|EHM35776.1| cold-shock deAd box protein a [Enterococcus faecium E4452]
gi|378937232|gb|AFC62304.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388532612|gb|AFK57804.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium DO]
gi|402924387|gb|EJX44599.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
S447]
gi|402926241|gb|EJX46293.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R501]
gi|402930201|gb|EJX49880.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R499]
gi|402934931|gb|EJX54225.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R496]
gi|402946393|gb|EJX64674.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
R446]
gi|402952005|gb|EJX69866.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1137]
gi|402953338|gb|EJX71063.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
P1140]
gi|402962168|gb|EJX79137.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV99]
gi|402967955|gb|EJX84466.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV69]
gi|402973745|gb|EJX89845.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV38]
gi|402977156|gb|EJX92995.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV168]
gi|402978215|gb|EJX93973.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV26]
gi|402986313|gb|EJY01444.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV165]
gi|402988977|gb|EJY03941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV161]
gi|402992431|gb|EJY07139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV102]
gi|402996952|gb|EJY11308.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
ERV1]
gi|402997720|gb|EJY12029.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E422]
gi|403000335|gb|EJY14462.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
E417]
gi|403002697|gb|EJY16644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C497]
gi|403004081|gb|EJY17911.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C621]
gi|403004113|gb|EJY17941.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
C1904]
gi|403009946|gb|EJY23359.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 515]
gi|403018997|gb|EJY31633.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 514]
gi|403027273|gb|EJY39167.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 511]
gi|403029941|gb|EJY41662.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 510]
gi|403030418|gb|EJY42102.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 506]
gi|403033364|gb|EJY44870.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 509]
gi|430480583|gb|ELA57757.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430537055|gb|ELA77408.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430546683|gb|ELA86626.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430592410|gb|ELB30425.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430611728|gb|ELB48804.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430616431|gb|ELB53345.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430630040|gb|ELB66417.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430636649|gb|ELB72713.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430636858|gb|ELB72912.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640819|gb|ELB76647.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430641683|gb|ELB77478.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430647250|gb|ELB82698.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|430649535|gb|ELB84911.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
Length = 503
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|440297912|gb|ELP90553.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba invadens IP1]
Length = 759
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 25/287 (8%)
Query: 1 MLAVGFEEDVELILE--------------------NLPPKR---QSMLFSATMPSWVKKL 37
ML +GF+ED+ ILE NL Q++LFSAT+P WV ++
Sbjct: 263 MLNIGFKEDLNKILEAIHGNVTDDSKSGKDGYKKTNLNANNKVIQTLLFSATVPDWVTEV 322
Query: 38 SRKYL-DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96
S KYL ++ + ID+ + + K YA +K + LI Y G+TIVF
Sbjct: 323 SEKYLREDHVKIDVTSTTTQ-MPSNAKHYACMCFPYNKVETIVPLIKTYNPNGRTIVFCD 381
Query: 97 TKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156
TK++ ++ + + ++++ +HGDI+Q R +T+ GF++ +F+VL+ATDV ARG+DI V
Sbjct: 382 TKKECGDICIKIGEHLSAQMIHGDINQTLRTQTIKGFKEDRFSVLIATDVVARGIDISGV 441
Query: 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
DLII +P D +VHR+GRT RAGKEG + ++T ++ + +E+ V KFE + P
Sbjct: 442 DLIIMTRVPKDIPQYVHRAGRTARAGKEGITVTLYTMAEISALGMIEKSVNFKFERIGVP 501
Query: 217 VVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAA 263
E + + + + V TAQ++++E+ +A A
Sbjct: 502 QPETLARFAVLGLSGDMKDVKKSLYNVHMDTAQQVLDEEKDPKIAVA 548
>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
AHT 1]
Length = 470
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 152/271 (56%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +RQ++LFSATMP +++L+R+++ +P I + E
Sbjct: 156 MLNMGFIEDIEAILQETPQERQTLLFSATMPGPIEQLARRFMRDPQKISV--RSKEVTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ + + K +L L+ + IVF +TKR DE+ AL ++E +HG
Sbjct: 214 NTEQFHMVMEERQKFDVLCRLLDTQSPD-LAIVFGRTKRRVDELYEALNKRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R+ + F+ G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DMTQARRDSVMRQFKDGSIDILVATDVAARGLDITGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAG G A+ ++ + +R++E + +S P V++ +E V L V
Sbjct: 333 RAGNTGMAVTFVSNREVGHLRTIEYGTKSRIPRLSTPTVKEAIEGQQRIAVEKLLKTVES 392
Query: 239 ESVEFFTPTAQRLIEEKGTDA-LAAALAQLS 268
E + + P A L+ E + LAAAL L+
Sbjct: 393 EDITHYQPLADELLNEHDAETILAAALKMLT 423
>gi|447911698|ref|YP_007393110.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
gi|445187407|gb|AGE29049.1| Cold-shock DEAD-box protein A [Enterococcus faecium NRRL B-2354]
Length = 503
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
Length = 589
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 161 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 338 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 374
>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 131/216 (60%), Gaps = 4/216 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV I LP + Q++LFSATM + L R+ L PL I +
Sbjct: 177 MLDLGFVEDVRAIAARLPVRHQTLLFSATMSPAISALGRQLLHKPLQIAP--PEQAAPPP 234
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I+ I T A K L ++ A GG+T+VFT+TK+ AD ++ L T + + ALHG
Sbjct: 235 RIRQQVIFTPAARKAASLLAVLRREA-GGRTMVFTRTKQAADALARTLNTGGVTAAALHG 293
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D Q +R+RTL+ FR+G+ VLVATDV ARG+D+ V L++++++P PET++HR GRT
Sbjct: 294 DHGQVRRDRTLDDFRRGRLLVLVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTA 353
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215
RAG+ GTA+ + ++R +R +ER G + + P
Sbjct: 354 RAGRRGTALSLCDPAERLKLRDIERQSGARITVIDP 389
>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 502
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 145/256 (56%), Gaps = 5/256 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL +P +RQ++LFSATMP ++KL++ ++ P I + E E
Sbjct: 156 MLNMGFIEDIETILSEVPNERQTLLFSATMPKRIEKLAQTFMSEPKLIAV--KSKEVTME 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L I ++ IVF +TKR DE+S ALT +E +HG
Sbjct: 214 NIEQQYVEVHERQKFDTLCRFIDIHTPE-LAIVFGRTKRRVDELSEALTKRGYRAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R+ L F+ G VLVATDVAARGLDI V + +++LP DPE++VHR GRTG
Sbjct: 273 DLNQAKRDSVLRKFKNGLVDVLVATDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G A+ T +R V+++E+ K P E+ ++ E V L G+ E
Sbjct: 333 RAGKSGLALTFATPREREHVKTIEQVSKKKMTRREVPTYEEAIKGQQELAVEQLRGLIAE 392
Query: 240 -SVEFFTPTAQRLIEE 254
+ + A+ L++E
Sbjct: 393 GGADAYRAIAKDLLQE 408
>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
Length = 589
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 161 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 338 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 374
>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
Length = 589
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 161 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 338 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 374
>gi|397664785|ref|YP_006506323.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395128196|emb|CCD06401.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 566
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 138 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 195
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 196 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHG 254
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 255 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 314
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 315 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 351
>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
Length = 589
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 161 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 338 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 374
>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778243|ref|YP_005186682.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509059|gb|AEW52583.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 589
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE LP K+Q LFSATMP +++++ YL++P +I++ + +
Sbjct: 161 MLRMGFIEDVETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEI--RMETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASVHQKPDALIRVLEVEDYQG-VIVFVRTKSSTEEVAELLQQHGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + F+QG +LVATDVAARGLD+ V +I+Y++P+D ET+VHR GRTG
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG+ G IL T + R + S+ER + E V P
Sbjct: 338 RAGRSGVTILFVTPKESRLISSIERHTRQRIEKVQVP 374
>gi|417974638|ref|ZP_12615445.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|346328982|gb|EGX97294.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 497
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 148/266 (55%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++N+P +RQ++LFSATMP ++ + K++ P + + E +
Sbjct: 155 MLDMGFLEDIEAIIKNVPEERQTLLFSATMPKAIRSIGEKFMHEPQVVKIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ ++ V A TIVF +TKR DE+S L + + A +HG
Sbjct: 213 LVDQYFVKAREYEKFDIMTRILDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMNILKKFKEGRLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG G ++ T ++ +R +ER + E + PP ++ + + V
Sbjct: 332 RAGHHGISVTFVTPNEMEYLRVIERLTKKRMEPLRPPTEKEAFIGQISSALGDIKDLVEK 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
E + A L+E+ L AAL
Sbjct: 392 TETEKYEKQANELLEQYDAVELVAAL 417
>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
gi|225206051|gb|EEG88405.1| DEAD/DEAH box helicase [Coprococcus comes ATCC 27758]
Length = 531
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 148/267 (55%), Gaps = 19/267 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E +L +P +RQ++LFSATMP + ++++K+ +N I + + E
Sbjct: 159 MLNMGFREDIEFVLSGVPEERQTVLFSATMPKPIMEITKKFQNNAKVIKVT--KKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADE-VSLALTSIIASEALHG 119
I+ Y K +LS L+ +Y+ ++VF TK+ D V+ L + LHG
Sbjct: 217 NIEQYYYDVKPKKKEEVLSRLLDIYSPR-LSVVFCNTKKQVDLLVNALLGRGYFAAGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + GFR GK +LVATDVAARG+D+ V+ + +Y+LP D E +VHR GRTG
Sbjct: 276 DMKQEQRDRVMQGFRTGKTEILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+EG A + + ++ ++R CK + + Q V +LN V
Sbjct: 336 RAGREGRAFSFVSGKEVYKLKEIQR--YCKTKIYA-------------QKVPSLNDVANT 380
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQ 266
+E +R+IE++ D + A+ +
Sbjct: 381 KMENILDDVERVIEQEDLDMMINAIEE 407
>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
Length = 503
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAK--EVTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|365121590|ref|ZP_09338507.1| hypothetical protein HMPREF1033_01853 [Tannerella sp.
6_1_58FAA_CT1]
gi|363645308|gb|EHL84577.1| hypothetical protein HMPREF1033_01853 [Tannerella sp.
6_1_58FAA_CT1]
Length = 596
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 149/256 (58%), Gaps = 6/256 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E + IL +P +R +LFSATMP+ + K+++KY+ NP + ++G+++E AE
Sbjct: 158 MLNMGFTESINEILAAIPEERNMLLFSATMPAEIAKIAKKYMSNPKEV-VIGSKNEG-AE 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK A K L I Y I+F +T+R+ E++ L +++LHG
Sbjct: 216 NIKHVYYLVHAKDKYLALK-RIADYYPNIYGIIFCRTRRETQEIADQLIQDGYNADSLHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QR+ + FR +LVATDVAARGLD+ N+ +I+Y LP+D ET+ HRSGRTG
Sbjct: 275 ELSQAQRDAVMQKFRVKNLQLLVATDVAARGLDVDNLTHVINYGLPDDIETYTHRSGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN--GVH 237
RAGK+GT+I + ++ +R +E+ +G KFE P + E +V + V+
Sbjct: 335 RAGKKGTSIAIIHVKEKGRMRDIEKIIGKKFEKGHIPTGGQICEKQLFNLVDKIEKVKVN 394
Query: 238 PESVEFFTPTAQRLIE 253
E + + P+ R +E
Sbjct: 395 EEEIASYLPSIFRKLE 410
>gi|402298055|ref|ZP_10817779.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
gi|401726699|gb|EJS99915.1| ATP-dependent RNA helicase [Bacillus alcalophilus ATCC 27647]
Length = 534
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 165/296 (55%), Gaps = 25/296 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL + RQ++LFSATMP +KKLSRKY+ P + + N+ E A
Sbjct: 155 MLDMGFIDDIEHILREVKGVRQTLLFSATMPPAIKKLSRKYMTTPKMVTI--NKGEVTAP 212
Query: 61 GIKLYAISTTATSK-----RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I +K R I S+ I + I+F +TK+ E++ AL + +
Sbjct: 213 LINQIYFKVLERNKIDSLCRIIDSEEIDL------GILFCRTKKGVAELTEALQARGYLA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD++Q QR+ + FR L+ATDVAARG+D+ NV +I+Y++P DPE++VHR
Sbjct: 267 DGLHGDLTQSQRDSVMKKFRDSSIEFLIATDVAARGIDVDNVTHVINYDIPQDPESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVV 230
GRTGRAG++G A+ + T + + +RS+E ++ P +E+V+E S ++V
Sbjct: 327 IGRTGRAGRQGLALTLVTPREMKHLRSIEHEIKMSIPSQDVPTIEEVVEKQHDSWKKRVT 386
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGW 286
T+ E + F+P + ++E + + +AL +++ + P N E G+
Sbjct: 387 DTIEARGKE-FDLFSPLVKEILEVHSPEDVVSALLKMNFSTETP------NEEAGY 435
>gi|383785235|ref|YP_005469805.1| ATP-dependent RNA helicase [Leptospirillum ferrooxidans C2-3]
gi|383084148|dbj|BAM07675.1| putative ATP-dependent RNA helicase [Leptospirillum ferrooxidans
C2-3]
Length = 467
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 136/210 (64%), Gaps = 5/210 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D++ I+ LP RQS+LFSAT+P +++L+R + + I L N E +
Sbjct: 183 MLDMGFFPDIQAIVAGLPQDRQSLLFSATLPPRIQELARSFQRDAAIIRL--NSSEPSSP 240
Query: 61 GIKLYAISTTATSKR-TILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
I+ ++ + S++ IL ++ +V G+TIVFT+TKR A+E+S++L+ +++AL
Sbjct: 241 QIEQEIVTVSHGSQKLGILKTILDSVKNHTGQTIVFTRTKRGAEELSISLSGEGYSTDAL 300
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD SQH R R L FR+G +LVATDVAARGLDI + +I+Y+LP E +VHR GR
Sbjct: 301 HGDKSQHVRNRVLAKFRKGDLKILVATDVAARGLDIEGITHVINYDLPQTAEDYVHRIGR 360
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVG 207
TGRAG+ G AI + + T+RS+ER G
Sbjct: 361 TGRAGRTGKAISFYHPADTDTMRSIERMTG 390
>gi|373456662|ref|ZP_09548429.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
gi|371718326|gb|EHO40097.1| DEAD/DEAH box helicase domain protein [Caldithrix abyssi DSM 13497]
Length = 527
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 156/272 (57%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ + P ++++LFSAT+P +K L+RKY+D +++ + E+L
Sbjct: 160 MLNMGFIEDMEEIMRHTNPDKRTLLFSATIPPRIKDLARKYMDG---YEMITAKKEQLMP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLA---LTSIIASEAL 117
+ S++ I + ++F +T++DA SLA L ++EA+
Sbjct: 217 SLTEQIFYEVRVSEKFRALCRIIDFEDHFYGLIFCKTRKDA--ASLAEDLLERGYSAEAI 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ISQ QRER+LN F+ K +LVATDVAARG+D+ ++ +I+Y LP DPE++VHR GR
Sbjct: 275 HGEISQGQRERSLNRFKSRKVNILVATDVAARGIDVNDISHVINYALPQDPESYVHRIGR 334
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAGK+G A+ T + R + +++ G K P +D++ + ++ L +
Sbjct: 335 TGRAGKQGVAVTFVTPGETRKFQFIQQIAGRKIMKARLPRAQDIINAKRNKISEQLKNIS 394
Query: 238 PESVE-FFTPTAQRLIEEKGTDALAAALAQLS 268
++ + AQ L+++ + AA+ Q S
Sbjct: 395 EGKIDKHYLEWAQELLKDNDPAEVLAAVLQFS 426
>gi|383777440|ref|YP_005462006.1| putative RNA helicase [Actinoplanes missouriensis 431]
gi|381370672|dbj|BAL87490.1| putative RNA helicase [Actinoplanes missouriensis 431]
Length = 550
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 5/224 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ILE +RQ++LFSATMP + ++R++L P+ I + G + + E
Sbjct: 159 MLDMGFAEDIEAILEETAEERQTVLFSATMPGRIDAIARRHLREPVRIQM-GRAEPEPGE 217
Query: 61 G--IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA-SEAL 117
++ A K L ++ V A IVF +T+ + D+++ L +EAL
Sbjct: 218 APLVRQSAYVVARAHKPAALGRVLDVEAPTA-AIVFCRTREEVDQLTETLNGRGQRAEAL 276
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG +SQ R+R +N R G+ +LVATDVAARGLDI + +++Y LP PET+VHR GR
Sbjct: 277 HGGMSQEHRDRVVNRLRDGRADLLVATDVAARGLDIDRLSHVVNYSLPAAPETYVHRIGR 336
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
GRAG+EGTAI + + R V+++ER G + P V D+
Sbjct: 337 VGRAGREGTAITLVEPREHRMVKAVERTTGQRIHLQKVPTVADL 380
>gi|390454874|ref|ZP_10240402.1| DEAD/DEAH box helicase [Paenibacillus peoriae KCTC 3763]
Length = 524
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 136/214 (63%), Gaps = 9/214 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DVE IL+ +P +RQ+MLFSATMP+ ++KL+R Y++ P+++ + +++
Sbjct: 157 MLHMGFLNDVETILQEVPYRRQTMLFSATMPAGIRKLARVYMNEPIDVKVKSASSVPVSQ 216
Query: 61 GIKLYAISTTATSKRTILSDLITV---YAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I+ + TT K+ L D++ Y ++F +TKR A +++ L + AS
Sbjct: 217 -IRQVVVQTTDRGKQRALVDMLNTDRPYL----AVIFCRTKRRAAKLNEELQEMGFASGE 271
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ++RE+ + FR+ K +LVATDVAARGLD+ V + +Y++P D E+++HR G
Sbjct: 272 LHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIG 331
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RTGRAG +G A+ + T +R++++ G F
Sbjct: 332 RTGRAGGKGVAVTLATPRDVPELRNIQKVAGVTF 365
>gi|347524843|ref|YP_004831591.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345283802|gb|AEN77655.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 497
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 148/266 (55%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++N+P +RQ++LFSATMP ++ + K++ P + + E +
Sbjct: 155 MLDMGFLEDIEAIIKNVPEERQTLLFSATMPKTIRSIGEKFMHEPQVVKIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ ++ V A TIVF +TKR DE+S L + + A +HG
Sbjct: 213 LVDQYFVKAREYEKFDIMTRILDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++G+ +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLTQQRRMNILKKFKEGRLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG G ++ T ++ +R +ER + E + PP ++ + + V
Sbjct: 332 RAGHHGISVTFVTPNEMEYLRVIERLTKKRMEPLRPPTEKEAFIGQISSALGDIKDLVEK 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
E + A L+E+ L AAL
Sbjct: 392 TETEKYEKQANELLEQYDAVELVAAL 417
>gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
Length = 606
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E + IL+++P R ++LFSATM + ++S+ YL NP I +G ++E ++
Sbjct: 158 MLNMGFTESINSILQDVPKDRNTLLFSATMSPEIARISKNYLQNPKEI-TIGRKNEG-SQ 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
+K A K L + Y + I+F +T+R+ E++ L + +++LHG
Sbjct: 216 NVKHVVYKVHAKDKYAALKRIADFYPQI-YGIIFCRTRRETQEIADLLIKDGYNADSLHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QR+ + FR +LVATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTG
Sbjct: 275 ELSQAQRDAVMQKFRMRNIQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN--GVH 237
RAGK GT+I + + +R +E+ +G KFE P E + E +V+ + V+
Sbjct: 335 RAGKTGTSIAIINLRESGKLRDIEKIIGKKFENGELPTGEQICEQQIIKVIDEVEKVKVN 394
Query: 238 PESVEFFTPTAQRLIE 253
E +E F P R ++
Sbjct: 395 EEEIEHFLPEIYRKLD 410
>gi|335428790|ref|ZP_08555700.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|335430826|ref|ZP_08557712.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334887366|gb|EGM25698.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334891731|gb|EGM29977.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
Length = 528
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 4/226 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +RQ+ LFSATMP ++ ++ KY P I + + +
Sbjct: 158 MLKMGFREDLEYILQKTPTERQTTLFSATMPKAIQDIANKYQKKPKLIQI--ERKSLTVD 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
IK K +L L+ + IVF TKR+ DE+ + L +EALHG
Sbjct: 216 NIKQEYFELNNNQKFDLLVRLLD-HNHYQSAIVFCNTKREVDELVVRLQEHNYMTEALHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R +N FR +LVATDVAARG+D+ NV+ + +Y++P D E +VHR GRTG
Sbjct: 275 DLKQQQRDRVMNSFRNKNIKILVATDVAARGIDVNNVEAVFNYDIPLDDEAYVHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
RAG+ G + Q ++S+ER + K + S P V+D+ +S
Sbjct: 335 RAGQSGASYTFINPKQFHRLKSIERYIKHKIDKGSIPTVKDIQDSK 380
>gi|333920975|ref|YP_004494556.1| putative ATP-dependent RNA helicase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483196|gb|AEF41756.1| Putative ATP-dependent RNA helicase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 587
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL P RQS LFSATMP ++++SR YL +P + + K ++
Sbjct: 164 MLKMGFQEDVERILAMAPEGRQSALFSATMPRAIREISRTYLRDPAEVTI--KSTTKTSD 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K L+ + V ++F +TK+ DE++ L + AS +L+G
Sbjct: 222 TINQRWVLVSHARKLDALTRFLEVEPFDA-MLIFVRTKQATDELAEKLRARGFASTSLNG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RER + R GK +LVATDV ARGLD+ + ++++++P D +++VHR GRTG
Sbjct: 281 DIPQPVRERIVGELRAGKIDILVATDVVARGLDVERISHVVNFDIPTDNDSYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L T +RR +RS+ER G E + P VEDV
Sbjct: 341 RAGRSGEALLFVTPRERRLLRSIERSTGQPLEEIQVPTVEDV 382
>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 610
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 155/280 (55%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E ILE+ P +RQ LFSATMP +K+++ KYL P+++ + E
Sbjct: 161 MLKMGFIDDIEWILEHTPKQRQLALFSATMPEQIKRVANKYLSEPVHVKIAATT--TTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L ++ V G I+F +T+ E++ L + AS LHG
Sbjct: 219 TIEQRFVQVSQHNKLEALVRVLEVEKTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER ++ ++G +++ATDVAARGLD+ + +++Y++P D E +VHR GRTG
Sbjct: 278 DMNQQARERAVDQLKRGTLDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAG+ G AIL T + R +R++ER + + P E V E EQV
Sbjct: 338 RAGRTGMAILFVTHREMRMLRTIERATKSRISPMDVPSPETVTERRLSRLGEQVSEI--- 394
Query: 236 VHPESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+ +S++F +L + E TD LAAAL Q RP
Sbjct: 395 IAKDSLDFMKGAVAQLCQQLEVDTDILAAALLQQVQKDRP 434
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 161/279 (57%), Gaps = 8/279 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ+MLFSATMP +K+L+ ++L +P ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQSILKQVPDERQTMLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I K LS LI + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIEQAYIEVPERQKFEALSRLIDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVH 237
RAGKEG A T + + +ER + P + + LE ++++A L V
Sbjct: 333 RAGKEGEAWSFVTPREIDHLHFIERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEAVE 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPS 275
+ + A +++E+ L+AAL ++G R S
Sbjct: 392 KGELNEYKGLAIQMLEQYDSVQLLSAALKLMTGEKREAS 430
>gi|372488022|ref|YP_005027587.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359354575|gb|AEV25746.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 641
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 159/280 (56%), Gaps = 12/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE++P +RQ+ LFSATMP ++++++KYL +P + + A
Sbjct: 161 MLRMGFIDDVEWILEHIPAERQTALFSATMPEQIRRVAQKYLRDPQEVKIKSATSTVSAI 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ + +S K L+ ++ V I+F +TK +E++ L + A+ AL+G
Sbjct: 221 QQRYWQVS--GLHKLDALTRIMEVEDSLDAAIIFVRTKTATEELAQKLEARGYAAAALNG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + G +++ATDVAARG+D+P V +I+Y++P D E +VHR GRTG
Sbjct: 279 DMNQASRERVIEQLKSGGLDIVIATDVAARGIDVPRVSHVINYDIPYDVEAYVHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNG 235
RAG+ GTAIL + + R +R++E+ + P +DV + +QV+ TL
Sbjct: 339 RAGRTGTAILFVSPREMRMLRTIEKVTRQNISPLRLPTKQDVADRRVAQFKQQVIKTLEA 398
Query: 236 VHPESVEFFTPTAQRLIEEK--GTDALAAALAQLSGFSRP 273
+ FF ++ EE G +AAALA L SRP
Sbjct: 399 ---GELSFFEEVVTQIEEEANVGAHEVAAALAFLVQKSRP 435
>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
MI-1]
Length = 482
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 154/271 (56%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P +RQ++LFSAT+ +++L+R++L NP I + E
Sbjct: 156 MLNMGFIEDIEEILQQVPEERQTLLFSATISKPIQELARRFLKNPEFIAI--KAKEVTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K +LS + + + IVF +TKR DE+ AL+ ++E +HG
Sbjct: 214 SIDQSYVEVQEKQKFEVLSTFLDIQSPD-LAIVFGRTKRRVDELYEALSKRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +RE L F++G VLVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQSKRESVLRQFKEGIIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK+G AI T + +R +ER K P +++V+E V L V E
Sbjct: 333 RAGKKGEAITFVTPREMNHLRLIERITKHKISRRPIPTIKEVIEGQQRLAVEKLLKVVEE 392
Query: 240 -SVEFFTPTAQR-LIEEKGTDALAAALAQLS 268
E + A+ LIE+ +AAAL ++
Sbjct: 393 GGFEHYRRLAEDLLIEQDAATLVAAALRMIT 423
>gi|444380024|ref|ZP_21179191.1| Cold-shock DEAD-box protein A [Enterovibrio sp. AK16]
gi|443675845|gb|ELT82559.1| Cold-shock DEAD-box protein A [Enterovibrio sp. AK16]
Length = 624
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 159/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I+E P Q +LFSATMP VK++ ++L P ID+ G+ + E
Sbjct: 161 MLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVDRFLREPARIDVAGSN--RTVE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ K +S L+ + +IVF +T++D + ++ L++ + ALHG
Sbjct: 219 KVEQQFWVVKGVEKDEAMSRLLET-EETDASIVFVRTRQDTERLADWLSARGFKAAALHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ ++G +LVATDV ARGLD+P + + +Y++P D E+++HR GRTG
Sbjct: 278 DIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAG+ G AIL+ ++Q R +R++ER + E + P+ + V E+ ++ A L
Sbjct: 338 RAGRAGKAILLVRTNQIRMLRTIERVTSTRMEEIQLPLRDKVAEARLARLAADLQEQKES 397
Query: 239 ESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
+S+E F ++L E+ DA LAA L Q RP
Sbjct: 398 DSIEAFVGLVEKLQEQIDVDAATLAAMLLQRQQGKRP 434
>gi|406934671|gb|EKD68890.1| hypothetical protein ACD_47C00384G0003, partial [uncultured
bacterium]
Length = 637
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 135/226 (59%), Gaps = 6/226 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL++ P +RQ+++FSATMP + +L++K+ NP ID+ ++ A
Sbjct: 159 MLDMGFREDMETILKDTPAERQTIMFSATMPEDIAQLTKKFQKNPARIDVSCHKMN--AP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADE-VSLALTSIIASEALH 118
I+ + SK L+ LI Y G K +VF TK DE V + T +EALH
Sbjct: 217 KIEQFYYELLEKSKPEALARLIDFY--GVKLALVFCNTKMRVDELVEVLKTRGYLAEALH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q R++ ++GFR G +LVATDVA RG+D+ +V+ + +Y+LP D E +VHR GRT
Sbjct: 275 GDLNQRMRDKVMSGFRSGLIEILVATDVAGRGIDVNDVEAVFNYDLPRDDEDYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAGK G A TS Q ++ +ERD K P + D+ E+
Sbjct: 335 ARAGKSGKAFTFVTSRQLSNLKRIERDFDLKVSCRRVPSLSDLDET 380
>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 662
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I + P +RQ LFSATMP ++++++ L +P+ + + N + +
Sbjct: 164 MLNMGFAEDIDWIFDQAPAERQVALFSATMPPAIRRVAQTRLVDPVEVKIAANSE--TVD 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + T K +L+ ++ + G ++F +TK E++ L + A+E L+G
Sbjct: 222 TIEQHHCIVTRFHKLDVLTRIMELEPFDG-LLIFVRTKNATTELADKLKAHGFAAEPLNG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RERT+ +QG+ VLVATDVAARGLD+ + +++Y++P DP +VHR GRTG
Sbjct: 281 DMNQEMRERTVERLKQGQLDVLVATDVAARGLDVERISHVVNYDIPTDPSAYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL+ +R ++S+ER + + PP + ES ++ + + E
Sbjct: 341 RAGRAGRAILLVEPRERGLLKSIERVIRRPIPSMEPPSAAALSESRIDRFIGEIRKAQSE 400
Query: 240 S-VEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
++FF R+ +E+ + L AAALA L+ RP
Sbjct: 401 QDLDFFYRLLARISQEQEIEMLDIAAALAYLNQRERP 437
>gi|374261655|ref|ZP_09620233.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
gi|363537749|gb|EHL31165.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
Length = 584
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 155/271 (57%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ LP ++Q LFSATMP +++++ YL+NP +I++ + +
Sbjct: 161 MLRMGFIEDIETIMAKLPEQKQIGLFSATMPHRIRQIANTYLNNPASIEI--RSETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASGHQKPDALVRVLAVEEYQG-VIVFVRTKSSTEEVAELLQQQGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + FRQG +LVATDVAARGLD+ V +I+Y+LP+D ET+VHR GRTG
Sbjct: 278 DITQALRERIIAQFRQGAIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G AIL T + R + S+ER + V+ P + + ++ +A + +
Sbjct: 338 RAGRSGVAILFVTPKESRLISSVERHTRQRITKVNVPNDHMIQVARQQRFMANITARLEH 397
Query: 239 ESVEFFTPTAQRLIEEKGTDA--LAAALAQL 267
E++ + + I+E A +AA LA L
Sbjct: 398 ENIHSYRKIVEEYIKEHEVSAVDVAATLALL 428
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 161/279 (57%), Gaps = 8/279 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ+MLFSATMP +K+L+ ++L +P ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQSILKQVPDERQTMLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I K LS LI + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIEQAYIEVPERQKFEALSRLIDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVH 237
RAGKEG A T + + +ER + P + + LE ++++A L V
Sbjct: 333 RAGKEGEAWSFVTPREIDHLHFIERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEAVE 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSRPPS 275
+ + A +++E+ L+AAL ++G R S
Sbjct: 392 KGELNEYKGLAIQMLEQYDSVQLLSAALKLMTGEKREAS 430
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 156/274 (56%), Gaps = 12/274 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I+ N+P +RQ++LFSATMP + ++ K++ P + + E +
Sbjct: 155 MLDMGFLDDIEKIISNVPGQRQTLLFSATMPKAILRIGEKFMTEPEVVKIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ ++ V A TIVF +TKR DE+S L + + A +HG
Sbjct: 213 LVDQYFVKVRDYEKFDIMTRILDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F++GK +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQRRMSILKRFKEGKLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG+ G ++ T ++ +R +ER + + + PP E E+ QV + L+ V
Sbjct: 332 RAGRHGVSVTFVTPNEMDYLRVIERLTKKRMDPLRPPTEE---EAFVGQVSSALDDVKEL 388
Query: 239 ----ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
E+ ++ T + L E D +AA L ++
Sbjct: 389 VAKTETSKYETQAKELLAEYDDVDLVAALLNNMT 422
>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
Length = 528
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 178/342 (52%), Gaps = 26/342 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P RQ++LFSATM + +LS+KY +N I +V Q
Sbjct: 159 MLDMGFRDDIETIIQEIPQNRQTILFSATMAKAIIELSKKYQNNAEFIKVVHKQ--LTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ + +K +LS LI + + K +++F TK+ DEV L + +E LH
Sbjct: 217 NIEQRYLEVKENNKLEVLSRLIDM--RNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QR+R +N FR G +LVATDVAARG+D+ +V+ + +Y+LP D E +VHR GRT
Sbjct: 275 GDMKQPQRDRVMNKFRNGTIEILVATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLN 234
GRAG+ G A R +R +ER K + P DV E A E+V T+
Sbjct: 335 GRAGRSGIAFTFVAGKAIRKLRDIERYTKTKVKRAEIPSASDVEEFKANTFLEKVKNTIE 394
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS-GFSRPPSSRSLINH------EQGWV 287
H ++ L E+ T +AAAL ++S G + ++ + E G V
Sbjct: 395 EGHLG--KYIDYIENLLDEDYATIDIAAALLKMSLGEEKKEEILNISDDIGDTGAEPGMV 452
Query: 288 TL--QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHI 327
L + R++ + AR V+G ++ A IGKI I
Sbjct: 453 RLFINIGRNNK-----VQARDVIGAIAGETGIAGKVIGKIDI 489
>gi|357589095|ref|ZP_09127761.1| hypothetical protein CnurS_02800 [Corynebacterium nuruki S6-4]
Length = 686
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 140/225 (62%), Gaps = 4/225 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL P +RQ LFSATMPS +++LS++YL++ + Q + A+
Sbjct: 197 MLNMGFQEDVERILSETPEERQVALFSATMPSAIRRLSKQYLNDAQEYTVKSEQ--RTAD 254
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + T +K L+ ++ V I+F +TK D ++V+ L + + A++G
Sbjct: 255 NITQDYLFVTFRNKMNALTRILEV-TDFDAMILFVRTKSDTEDVAEKLRAQGFKAAAING 313
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRERT++ + G +LVATDVAARGLD+ + + +Y++P D E++VHR GRTG
Sbjct: 314 DIAQNQRERTVDQLKDGTLDILVATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTG 373
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
RAG+ G AIL T ++R ++++ER + P VE+V E+
Sbjct: 374 RAGRHGRAILFVTPREKRMLKNIERATKSHINEIDLPGVEEVNEA 418
>gi|402573181|ref|YP_006622524.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402254378|gb|AFQ44653.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 537
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 146/235 (62%), Gaps = 5/235 (2%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E +L +P + +Q +LFSATMP ++KL++ Y+++P ++ + ++DE
Sbjct: 161 MLDMGFIDDIESLLREVPAEGKQVLLFSATMPPGIRKLAQTYMNSPRSVTV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I T + K L +I + G+ I+F +TKR DE+ +AL + ++ALH
Sbjct: 219 PLIDQVFYETRESIKVDALGRIIDM-EDIGQGIIFCRTKRGVDELVVALEARGYFADALH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +L+ATDVAARGLDI NV +I++++P DP ++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKRFRDGKTELLIATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
GR G++G AI + + + R +R +E + + + P + D+ E AE + L
Sbjct: 338 GRIGRKGQAITLISPKEYRQLRLIENLIKTRIKRQELPSLADISERQAENIKMQL 392
>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
Rt17-B1]
Length = 571
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 150/273 (54%), Gaps = 13/273 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I++ +++ LFSATMP + ++RK++ +++ V +DE E
Sbjct: 174 MLDMGFLDDVLEIIKRTGENKRTFLFSATMPKEIVDIARKFMKEYIHVSTV--KDELTTE 231
Query: 61 GIKLYAISTTATSKRTILSDLITV----YAKGGKTIVFTQTKRDADEVSLALTSI-IASE 115
+ K +L +I + Y IVF QTK + DE+S L + ++
Sbjct: 232 NAEQLYFEVDEKDKLPLLCRIIDMNPDFYG-----IVFCQTKLEVDEISKKLLDLGYNAD 286
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
LHGD SQ+QRER L+ FR+ + +LV TDVAARG+DI + +I+Y +P DPE +VHR
Sbjct: 287 GLHGDYSQYQRERVLDKFRKKQLRILVTTDVAARGIDIDGLTHVINYSVPRDPEYYVHRI 346
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
GRTGRAGK+G AI T ++R K S P VED+L E+++ TL
Sbjct: 347 GRTGRAGKKGFAITFVTRDDYFHFARVKRFAKAKIIKDSIPQVEDILNRQLEKLLDTLKN 406
Query: 236 VHPESVEFFTPTAQRLIEEKG-TDALAAALAQL 267
S E + AQ++IEE G T+A+ L L
Sbjct: 407 APKVSNELYKRAAQQIIEEMGPTEAVEMLLHTL 439
>gi|319780673|ref|YP_004140149.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166561|gb|ADV10099.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 624
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 141/235 (60%), Gaps = 10/235 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +R++++FSAT+P + L++ Y + + I G + + L
Sbjct: 160 MLDLGFREDLEFILDAAPAERRTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHL-- 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----SIIASEA 116
I+ A+S + + +++ Y + +VF T+ + ++ S++A
Sbjct: 218 DIEYRALSVAQPDRENAIINVLRYY-EAKNALVFCNTRAAVNHLTARFNNRNFSVVA--- 273
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
L G++SQ++R L R G+ V +ATDVAARG+D+PN++L+IH +LP +PET +HRSG
Sbjct: 274 LSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNPETLLHRSG 333
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
RTGRAG++G + L+ +S R+ L ++ G K + SPP +DV+ E+++A
Sbjct: 334 RTGRAGRKGVSALIVPNSARKRTERLLQNAGLKATWASPPSADDVMRRDDERILA 388
>gi|218777997|ref|YP_002429315.1| DEAD/DEAH box helicase [Desulfatibacillum alkenivorans AK-01]
gi|218759381|gb|ACL01847.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
alkenivorans AK-01]
Length = 567
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 138/240 (57%), Gaps = 10/240 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG-NQDEKLA 59
ML +GF+ED+ IL +LP +R++ LFSATMP V ++ KY NP+ + + G NQ
Sbjct: 157 MLNMGFQEDINAILSSLPDERRTWLFSATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDI 216
Query: 60 EGI--KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I ++A + A KR I Y +VF +T++D E++ AL + ++A
Sbjct: 217 SHICYMIHAKNRYAALKR------ILDYCPDMFGLVFCRTRKDTQEIAEALMADGYNADA 270
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ QR++ + FR+ VL ATDVAARGLD+ ++ +IHY LP+DPE + HRSG
Sbjct: 271 LHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARGLDVDDISHVIHYVLPDDPEAYTHRSG 330
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV 236
RT RAGK+G +I + T + ++ LER F+ S P D+ + + L V
Sbjct: 331 RTARAGKQGKSIALITPRENYRLKDLERRGKFSFQLDSLPQGRDICQKQVAGLAEKLASV 390
>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
33656]
gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
33656]
gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
17629]
gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
Length = 530
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 158/285 (55%), Gaps = 12/285 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E +LE LP + Q++LFSATMP + +++RKY + +NI +V + E
Sbjct: 159 MLNMGFREDIETVLEYLPQEHQTVLFSATMPKPILEITRKYQHDAINIKIV--KKELTVA 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y K +L+ L+ Y ++VF TK+ DE++ L ++E LHG
Sbjct: 217 NIDQYYYDVKRKDKIDVLTRLLDYYNPK-LSLVFCNTKKMVDELAYELCGRGYSAEGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR GK +L+ATDVAARG+D+ +V+ + +Y+LP D E +VHR GRTG
Sbjct: 276 DMKQVQRDRVMKNFRNGKTDILIATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVATLNG-V 236
RAG+ G A + ++ ++R CK + + P+ +DV + AE+++ ++ +
Sbjct: 336 RAGRCGKAFSFVKGKEVYKLKDIQR--YCKTKIYAQPIPSSDDVAKIRAEKIMDQISTII 393
Query: 237 HPESVEFFTPTAQRLIEEK---GTDALAAALAQLSGFSRPPSSRS 278
E++ + I E D AA L Q G S ++ S
Sbjct: 394 DEENLTSVIDIIENQINESDYTAMDIAAAFLYQAMGASEISTAES 438
>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
100599]
Length = 529
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 146/235 (62%), Gaps = 14/235 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ ++P +RQ++LFSATMP +K+L+ +Y+ P I + +++E A
Sbjct: 155 MLDMGFIEDIETIINHMPDERQTLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAP 212
Query: 61 GI-----KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I K++ + + R + S+ + + I+F +TKR DE+S L S +
Sbjct: 213 LIEQVYYKVFDRNKVESLCRILDSEDVEL------GIIFCRTKRGVDELSEVLQSRGYLA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR++ +N FR+G L+ATDVAARG+D+ NV +I+Y++P D E++VHR
Sbjct: 267 DGLHGDLSQAQRDKVMNAFREGSIEFLIATDVAARGIDVGNVSHVINYDIPQDSESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GRTGRAG++G A+ + T + R + +++ + + P +E+V E EQ+
Sbjct: 327 IGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKAQVLSRNVPSLEEVAERKQEQL 381
>gi|13473704|ref|NP_105272.1| DEAD/DEAH box helicase [Mesorhizobium loti MAFF303099]
gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
MAFF303099]
Length = 620
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 140/235 (59%), Gaps = 10/235 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +R++++FSAT+P + L++ Y + + I G + + L
Sbjct: 158 MLDLGFREDLEFILDAAPAERRTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHL-- 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----SIIASEA 116
I+ A++ + + +++ Y + +VF T+ + ++ S++A
Sbjct: 216 DIEYRALNVAQADRENAIINVLRFY-EAKNALVFCNTRAAVNHLTARFNNRNFSVVA--- 271
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
L G++SQ++R L R G+ V +ATDVAARG+D+PN++L+IH +LP +PET +HRSG
Sbjct: 272 LSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNPETLLHRSG 331
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
RTGRAG++G + L+ S RR L ++ G K + SPP +DV+ E+++A
Sbjct: 332 RTGRAGRKGVSALIVPGSARRRTERLLQNAGLKATWASPPSADDVIRRDDERILA 386
>gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 581
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 133/217 (61%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+ED+ IL N P ++ + LFSATMP V+++++KY+ +P + VGN++ A
Sbjct: 158 MLNMGFQEDINNILSNTPEEKTTWLFSATMPQEVRRIAQKYMSDPFEL-TVGNKNSGNAN 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
Y + K L ++ Y I+FT+TK ++ E++ +L ++ALHG
Sbjct: 217 IEHEYYV-VRPREKYAALKRIVD-YNPEIFGIIFTRTKIESQEIAESLIRDGYNADALHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QR++ + FR+ VLVATDVAARG+D+ NV +I+YELP+D E + HRSGRT
Sbjct: 275 DLTQQQRDKVMKRFREKSLQVLVATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTA 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAGK G +I + T +R +ER +G KF V P
Sbjct: 335 RAGKSGISIAIITGRDTGKIRQIERVIGKKFTKVDVP 371
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 156/274 (56%), Gaps = 14/274 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+ELIL +P RQ++LFSATMP+ + KL++++ +P LV +K+
Sbjct: 158 MLDMGFREDIELILTKVPDDRQTILFSATMPALIMKLTKRFQRDP---QLVKTIHKKVTV 214
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALH 118
++ +K +L LI +Y ++VF TKR DE+ L T ++ LH
Sbjct: 215 PNVEQSYFEVKFHTKPEVLCRLIDIYDVKS-SLVFCNTKRAVDELVDTLKTRGYLADGLH 273
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QRER + FR+G LVATDVAARG+D+ N++++ +++LP D E++VHR GRT
Sbjct: 274 GDMKQQQRERVMASFRKGDIETLVATDVAARGIDVENIEVVFNFDLPQDEESYVHRIGRT 333
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLN 234
GRAG++G A T + ++S+++ K P D E A++V T++
Sbjct: 334 GRAGRQGRAFTFVTGRELYKIKSIQKYTNVKILSQKVPTRSDAEEIKANMLAQKVKDTID 393
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDA-LAAALAQL 267
H + + +R+ EE+ T +AAAL ++
Sbjct: 394 SGH---MGKYVNWVERMTEEEYTSVDVAAALVKM 424
>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
DSM 20162]
Length = 602
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 154/261 (59%), Gaps = 19/261 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P +Q LFSATMP ++K+++KYL +P+ I + K A
Sbjct: 183 MLTMGFQEDVERILADTPEFKQVALFSATMPPAIRKIAKKYLHDPVEISV----KAKTAT 238
Query: 61 GIKLYAISTTATSKRTI--LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
G + +R + L+ L+ V G I+F +TK +E++ L + A+ A+
Sbjct: 239 GSNITQRYLQVAHQRKLDALTRLLEVEEFDG-MIIFVRTKSATEELAEKLRARGHAAAAI 297
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
+GDI Q QRERT+ + GK +LVATDVAARGLD+ + +++Y++P+D E++VHR GR
Sbjct: 298 NGDIVQAQRERTIGQLKDGKVDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGR 357
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL 233
TGRAG++G A+L T +R +R++E+ + P VEDV +E E + L
Sbjct: 358 TGRAGRKGDALLFVTPRERHLLRAIEKATRQPLTEIGLPSVEDVNAHRVEKFGESITENL 417
Query: 234 NGVHPESVEFFTPTAQRLIEE 254
+ H ++ F +RLIE+
Sbjct: 418 SNDH---LQMF----RRLIED 431
>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
Length = 607
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 132/223 (59%), Gaps = 16/223 (7%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL+ LP +RQ +LFSATMP +++LS++YL +P + + E +
Sbjct: 212 MLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEIRRLSKRYLKDPAEVTIRTKDQE--GK 269
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA---- 116
I+ +I+ K L ++ G I+F +TK ++ LT EA
Sbjct: 270 RIRQRSITVPMPHKLEALQRVLDACGSEG-VIIFARTK------AITLTVAETLEAGGHQ 322
Query: 117 ---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
L+GD+ Q+QRERT+ R G +LVATDVAARGLD+ + L+I+Y++P D E +VH
Sbjct: 323 VAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYVH 382
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
R GRTGRAG+ G A+L T +RR +R+LER G E + P
Sbjct: 383 RIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQPIEAMEVP 425
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 141/234 (60%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE P RQ LFSATMP ++++++ +L +P I + +
Sbjct: 163 MLRMGFIDDVEWILEQTPATRQIALFSATMPDAIRRIAKTHLQSPQEITI--KRKTVTNA 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ K L+ ++ G I+F +T+ E++ L + A+ AL+G
Sbjct: 221 SIRQRVWIMAGVQKLDALTRILETEDYDG-VIIFVRTRIATQELADKLAARGFATAALNG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRE+T++ F++G+ +LVATDVAARGLD+ V +I+Y++PNDPE ++HR GRTG
Sbjct: 280 DIAQNQREKTVDSFKRGQLDLLVATDVAARGLDVDRVSHVINYDIPNDPEAYIHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAG+ G AIL +RR + ++ER G K + ++ P E V++ A + A +
Sbjct: 340 RAGRTGEAILFAAKRERRLLHAIERTTGQKIDQMTLPSAEQVVDKRAARFKARI 393
>gi|398814336|ref|ZP_10573017.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398036605|gb|EJL29814.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 529
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 146/235 (62%), Gaps = 14/235 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ ++P +RQ++LFSATMP +K+L+ +Y+ P I + +++E A
Sbjct: 155 MLDMGFIEDIETIINHMPDERQTLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAP 212
Query: 61 GI-----KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I K++ + + R + S+ + + I+F +TKR DE+S L S +
Sbjct: 213 LIEQVYYKVFDRNKVESLCRILDSEDVEL------GIIFCRTKRGVDELSEVLQSRGYLA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR++ +N FR+G L+ATDVAARG+D+ NV +I+Y++P D E++VHR
Sbjct: 267 DGLHGDLSQAQRDKVMNAFREGSIEFLIATDVAARGIDVGNVSHVINYDIPQDSESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GRTGRAG++G A+ + T + R + +++ + + P +E+V E EQ+
Sbjct: 327 IGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKAQVLSRNVPSLEEVAERKQEQL 381
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 158/273 (57%), Gaps = 10/273 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +P +RQ+MLFSATMP +K++ +++ P ++ + E A+
Sbjct: 155 MLNMGFLEDIESIIKQVPDERQTMLFSATMPPEIKRIGVQFMKEPHHVKI--KSKEMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ L V A TIVF +TKR DE+S L + + A +HG
Sbjct: 213 TVDQYYVKAKEFEKFDIMTRLFDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R + + F+ GK +LVATDVAARGLD+ V + +Y++P DP+++VHR GRTG
Sbjct: 272 DLSQQRRTQIMRQFKAGKLDILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGV 236
RAG +G ++ T ++ +R +E+ + + PP + ++AE V +L V
Sbjct: 332 RAGHKGVSLTFVTPNEMEYLRVIEKLTKKRMLPLKPPTESEAFAGQLAAAEANVDSL--V 389
Query: 237 HPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
S E + A L+++ TD +AA L L+
Sbjct: 390 AKTSTEKYADQAAELLQKYDATDLVAALLNDLT 422
>gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B']
Length = 472
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 180/356 (50%), Gaps = 35/356 (9%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ ILE++P RQ +LFSAT+P + +++ KY N + I+ Q +
Sbjct: 83 MLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIANKYQTNAVKINTTKKQ--VTVK 140
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSI-IASEALH 118
I + + K +L+ LI + K +VF TK+ D++ L S +EALH
Sbjct: 141 TISQHYLDVNEKKKSEVLARLID--SNNFKLMLVFCNTKKRVDDLCKDLMSRGYKAEALH 198
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q R+ +N FR+G +L+ATDVAARG+DI +VD + +Y+LP D E +VHR GRT
Sbjct: 199 GDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFNYDLPIDDEYYVHRIGRT 258
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP 238
GRA ++GT+ + +R +ER K ++ P ++D+ +V + L+ +
Sbjct: 259 GRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDDI---KGNKVNSILDEIKE 315
Query: 239 E--------SVEFFTPTAQRLIEE------KGTDALAA----ALAQLSGFSRPPSSRSLI 280
E ++ F T AQ L E T+ AA A+ ++ S P + +
Sbjct: 316 EIKEGKITTNLAFITQIAQELNAECEELDITSTEVAAAFLNVAMKKMVTGSNPRVKLADL 375
Query: 281 NHEQGWVTLQLTRDSAFSRGFMS--------ARSVMGFLSDVYPTAADEIGKIHII 328
HE T + + R F++ + ++ F++ + EIGKI ++
Sbjct: 376 EHEDKKTTTYGYNEKGYKRLFINLGNKDKLESSQLVKFVASNTSVSGKEIGKIDML 431
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 158/273 (57%), Gaps = 10/273 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +P +RQ+MLFSATMP +K++ +++ P ++ + E A+
Sbjct: 155 MLNMGFLEDIESIIKQVPDERQTMLFSATMPPEIKRIGVQFMKEPHHVKI--KSKEMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ L V A TIVF +TKR DE+S L + + A +HG
Sbjct: 213 TVDQYYVKAKEFEKFDIMTRLFDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R + + F+ GK +LVATDVAARGLD+ V + +Y++P DP+++VHR GRTG
Sbjct: 272 DLSQQRRTQIMRQFKAGKLDILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGV 236
RAG +G ++ T ++ +R +E+ + + PP + ++AE V +L V
Sbjct: 332 RAGHKGVSLTFVTPNEMEYLRVIEKLTKKRMLPLKPPTESEAFAGQLAAAEANVDSL--V 389
Query: 237 HPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
S E + A L+++ TD +AA L L+
Sbjct: 390 AKTSTEKYADQAAELLQKYDATDLVAALLNDLT 422
>gi|336322978|ref|YP_004602945.1| DEAD/DEAH box helicase [Flexistipes sinusarabici DSM 4947]
gi|336106559|gb|AEI14377.1| DEAD/DEAH box helicase domain protein [Flexistipes sinusarabici DSM
4947]
Length = 527
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 153/272 (56%), Gaps = 9/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P ++ +LFSATMP + ++++++ ++ + E+LA
Sbjct: 160 MLNMGFIEDIESILKRANPDKRMLLFSATMPREILNIAKRFMGE---FEIFRTKSEELAA 216
Query: 61 GI--KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
G+ ++Y K L I K I+F +TK D D+++ L +EAL
Sbjct: 217 GLTEQIY-FEVREPDKFEALC-RIRDMEKEFYGIIFCRTKVDVDKLANRLIDRGYNAEAL 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDISQHQRER L FR + +LVATDVAARG+DI ++ +I+Y LP DPE ++HR GR
Sbjct: 275 HGDISQHQRERILKKFRNKQVNMLVATDVAARGIDIQDLTHVINYALPQDPEAYIHRIGR 334
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGV 236
TGRAGKEGTAI T + R + + R S P V +++E+ E + L +
Sbjct: 335 TGRAGKEGTAITFVTPEEYRKLLFIMRKAKTDIRKESLPGVGEIIEAKKENIKEEILEAL 394
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
+ + + + A+ L+E D L +AL ++
Sbjct: 395 NSDELRNYKDIAEDLLENAEPDKLVSALLNIA 426
>gi|433545971|ref|ZP_20502309.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182587|gb|ELK40150.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 549
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 146/235 (62%), Gaps = 14/235 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ ++P +RQ++LFSATMP +K+L+ +Y+ P I + +++E A
Sbjct: 175 MLDMGFIEDIETIITHMPEERQTLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAP 232
Query: 61 GI-----KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I K++ + + R + S+ + + I+F +TKR DE+S L S +
Sbjct: 233 LIEQVYYKVFDRNKVESLCRILDSEDVEL------GIIFCRTKRGVDELSEVLQSRGYLA 286
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR++ +N FR+G L+ATDVAARG+D+ NV +I+Y++P D E++VHR
Sbjct: 287 DGLHGDLSQAQRDKVMNAFREGSIEFLIATDVAARGIDVGNVSHVINYDIPQDSESYVHR 346
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GRTGRAG++G A+ + T + R + +++ + + P +E+V E EQ+
Sbjct: 347 IGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKAQVLSRNVPSLEEVAERKQEQL 401
>gi|399055613|ref|ZP_10743308.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398046822|gb|EJL39406.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 529
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 146/235 (62%), Gaps = 14/235 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ ++P +RQ++LFSATMP +K+L+ +Y+ P I + +++E A
Sbjct: 155 MLDMGFIEDIETIITHMPEERQTLLFSATMPPEIKRLATRYMKQPQTIAV--SREEVTAP 212
Query: 61 GI-----KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
I K++ + + R + S+ + + I+F +TKR DE+S L S +
Sbjct: 213 LIEQVYYKVFDRNKVESLCRILDSEDVEL------GIIFCRTKRGVDELSEVLQSRGYLA 266
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ LHGD+SQ QR++ +N FR+G L+ATDVAARG+D+ NV +I+Y++P D E++VHR
Sbjct: 267 DGLHGDLSQAQRDKVMNAFREGSIEFLIATDVAARGIDVGNVSHVINYDIPQDSESYVHR 326
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GRTGRAG++G A+ + T + R + +++ + + P +E+V E EQ+
Sbjct: 327 IGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKAQVLSRNVPSLEEVAERKQEQL 381
>gi|417810743|ref|ZP_12457421.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
gi|335348538|gb|EGM50040.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
Length = 499
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P +RQ++LFSATMP + K+ K++ NP + + E +
Sbjct: 163 MLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTD 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + T K I++ LI V A TIVF +TKR DE+S L + + A +HG
Sbjct: 221 LVDQYFVKTKEFEKFDIMTRLIDVQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 280 DLTQQRRMNVLRKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-- 237
RAG GT++ T ++ +R +E+ + + + PP + E+ QV + L+ +
Sbjct: 340 RAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDL 396
Query: 238 --PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E + AQ L+E+ DA+ A L+ ++ +S
Sbjct: 397 IADTDTERYKAQAQALLEQ--YDAVEVVAAFLNNMTKKDAS 435
>gi|410639150|ref|ZP_11349703.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
gi|410141678|dbj|GAC16908.1| ATP-dependent RNA helicase DeaD [Glaciecola lipolytica E3]
Length = 575
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 160/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL + P RQ+ LFSATMP+ +KK++ +YL+NP ++ + A
Sbjct: 162 MLRMGFIDDVEWILSHAPETRQTALFSATMPAPIKKITERYLNNPKHVKIASKVS--TAS 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ K L+ ++ V G I+F +TK E++ L++ E L+G
Sbjct: 220 TIRQRFCQVAGHHKLEALTRIMEVEEFDG-VIIFVRTKTATVELADKLSARGYDVEPLNG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+ RERT++ +QGK +LVATDV ARGLD+ V +I+Y++P D E++VHR GRTG
Sbjct: 279 DIAQNARERTVDRLKQGKIDILVATDVVARGLDVERVSHVINYDVPYDTESYVHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV-VATLNGVHP 238
RAG++G AIL + ++R + S+E+ E + P + ++ ++ + + + +
Sbjct: 339 RAGRQGDAILFISHREKRMLFSIEKATKQNIEQMPIPSISEINQTRLSRFKTSVIEAIQD 398
Query: 239 ESVEFFTPTAQRLIE--EKGTDALAAALAQLSGFSRP 273
+S+E P + + + E + + AALA+++ P
Sbjct: 399 DSIESLIPIVESIQKETEAAPEKIMAALAKIAQGDEP 435
>gi|403738909|ref|ZP_10951510.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
gi|403191559|dbj|GAB78280.1| putative DEAD-box RNA helicase [Austwickia chelonae NBRC 105200]
Length = 513
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 124/193 (64%), Gaps = 5/193 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI-DLVGNQDEKLA 59
ML +GF DVE IL P RQ+MLFSATMP V L+R+Y+ P +I + D
Sbjct: 196 MLDLGFLPDVERILGETPTSRQTMLFSATMPGAVVALARRYMTQPTHIRAMTTGDDSHTV 255
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS-IIASEAL 117
+ I+ + A K +LS ++ AKG G TIVFT+TKR A +V+ LT A+ +L
Sbjct: 256 QAIEQFIYRAHAMDKTEMLSRIL--QAKGRGLTIVFTRTKRTAAKVADELTDRGFAAASL 313
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+ Q RE+ + FR+GK VLVATDVAARG+D+ NV +++Y+ P D +T++HR+GR
Sbjct: 314 HGDLGQGAREQAMRAFRKGKVDVLVATDVAARGIDVENVTHVVNYQCPEDEKTYLHRTGR 373
Query: 178 TGRAGKEGTAILM 190
TGRAG+ G AI +
Sbjct: 374 TGRAGQTGIAITL 386
>gi|357026262|ref|ZP_09088366.1| DEAD/DEAH helicase [Mesorhizobium amorphae CCNWGS0123]
gi|355541877|gb|EHH11049.1| DEAD/DEAH helicase [Mesorhizobium amorphae CCNWGS0123]
Length = 621
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 142/235 (60%), Gaps = 10/235 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P +R++++FSAT+P + L++ Y + + I G + + L
Sbjct: 160 MLDLGFREDLEFILDAAPAERRTLMFSATVPRSIATLAQGYQRDTVRISAAGEEKQHL-- 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----SIIASEA 116
I+ A++ + + +++ Y + +VF T+ + ++ S++A
Sbjct: 218 DIEYRALNVAQADRENAIINVLRYY-EAKNALVFCNTRAAVNHLTARFNNRNFSVVA--- 273
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
L G++SQ++R L R G+ V +ATDVAARG+D+PN++L+IH +LP +PET +HRSG
Sbjct: 274 LSGELSQNERSHALQAMRDGRAKVCIATDVAARGIDLPNLELVIHADLPTNPETLLHRSG 333
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
RTGRAG++G + L+ +S R+ L ++ G K + SPP +DV++ E+++A
Sbjct: 334 RTGRAGRKGVSALIVPNSARKRTERLLQNAGLKATWASPPSADDVIQRDDERILA 388
>gi|392947743|ref|ZP_10313371.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|334881219|emb|CCB82055.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
gi|339637663|emb|CCC16621.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392437023|gb|EIW14919.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 526
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 158/273 (57%), Gaps = 10/273 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +P +RQ+MLFSATMP +K++ +++ P ++ + E A+
Sbjct: 155 MLNMGFLEDIESIIKQVPDERQTMLFSATMPPEIKRIGVQFMKEPHHVKI--KSKEMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ L V A TIVF +TKR DE+S L + + A +HG
Sbjct: 213 TVDQYYVKAKEFEKFDIMTRLFDVQAPE-LTIVFGRTKRRVDELSKGLEARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R + + F+ GK +LVATDVAARGLD+ V + +Y++P DP+++VHR GRTG
Sbjct: 272 DLSQQRRTQIMRQFKAGKLDILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE---SSAEQVVATLNGV 236
RAG +G ++ T ++ +R +E+ + + PP + ++AE V TL V
Sbjct: 332 RAGHKGVSLTFVTPNEMEYLRVIEKLTKKRMLPLKPPTESEAFAGQLAAAEADVDTL--V 389
Query: 237 HPESVEFFTPTAQRLIEE-KGTDALAAALAQLS 268
S + + A L+++ TD +AA L L+
Sbjct: 390 AKTSTDKYATQAAELLQKYDATDLVAALLNDLT 422
>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
Length = 607
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 134/224 (59%), Gaps = 18/224 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL+ LP +RQ +LFSATMP +++LS++YL +P + + K E
Sbjct: 212 MLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEIRRLSKRYLKDPAEVTI----RTKDQE 267
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSIIASEA--- 116
G ++ S T + + + A GG+ I+F +TK ++ LT EA
Sbjct: 268 GKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFARTK------AITLTVAETLEAGGH 321
Query: 117 ----LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
L+GD+ Q+QRERT+ R G +LVATDVAARGLD+ + L+I+Y++P D E +V
Sbjct: 322 QVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERIGLVINYDMPFDSEAYV 381
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
HR GRTGRAG+ G A+L T +RR +R+LER G E + P
Sbjct: 382 HRIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQPIEAMEVP 425
>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 484
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 140/243 (57%), Gaps = 6/243 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
M +GF + +E I+++L KR +ML SATMPS ++ LS +Y+ +P++ ++ ++ +
Sbjct: 158 MFNMGFVDQIETIIKDLSKKRVTMLLSATMPSAIETLSNRYMKDPIHAEI--EEESSAVD 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K +LSD IT+ I+F TK+ DEV+ L + E +HG
Sbjct: 216 RISQERYTVEYRDKMKLLSD-ITIVENPDSCIIFCNTKQRVDEVNDELIRLNYTCEKIHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ Q R R +N F+QG F LVATDVAARG+DI N+ L+I+Y++P D E++VHR GRTG
Sbjct: 275 GMEQRDRVRVMNEFKQGYFRYLVATDVAARGIDIDNISLVINYDIPQDKESYVHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
R +EG AI T + + ++ + R +G + + P +E V S E+ V +N PE
Sbjct: 335 RISREGRAITFVTQYEDKFLKDIHRYIGKEIPLMQRPEIETV-NDSKEEFVEKIN-TKPE 392
Query: 240 SVE 242
E
Sbjct: 393 VKE 395
>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 654
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 156/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I+E P Q +LFSATMP VK++ ++L NP ID+ G + +
Sbjct: 187 MLKMGFVDDVTWIMEQAPETAQRVLFSATMPPIVKEIVDRFLRNPARIDVAG--ENRTVS 244
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ K +S L+ +IVF +T++D + ++ L+S + ALHG
Sbjct: 245 KVEQQFWVVKGVEKDEAMSRLLETEDTDA-SIVFVRTRQDTERLADWLSSRGFKAAALHG 303
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ ++G +LVATDV ARGLD+P + + +Y++P D E+++HR GRTG
Sbjct: 304 DIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTG 363
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL+ ++Q R +R++ER + E + P+ + V S ++ L +
Sbjct: 364 RAGRTGKAILLVRTNQIRMLRTIERVTKSRMEEIQLPLRDLVAASRLNRLGEELAAQKEQ 423
Query: 240 -SVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
SVE F ++L E DA LAA L Q +RP
Sbjct: 424 TSVEAFVELVEKLQESIDVDAATLAAMLLQRQQGNRP 460
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 131/205 (63%), Gaps = 4/205 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + + I++ LP +RQ++ FSATMP+ + KL+ L NP + + K A+
Sbjct: 161 MLDLGFVKAIHRIVKTLPQRRQNLFFSATMPTEIAKLAADLLKNPAQVSV--TPVAKTAD 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ + KR IL DL+ AK +TI+FT+TKR AD+V+ L +++ A+HG
Sbjct: 219 RVEQQVLFVETHRKRDILVDLL-ADAKMARTIIFTRTKRGADKVAQHLEVCGVSAAAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ QRER+L FR G+ LVATD+AARG+D+ V +++++LP PE +VHR GRT
Sbjct: 278 NKSQSQRERSLASFRAGRVRALVATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTA 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLER 204
RAG EG AI + ++R +R++ER
Sbjct: 338 RAGAEGVAISLCDGAERDLLRNIER 362
>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase [Chloroflexus aggregans DSM 9485]
gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
9485]
Length = 550
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E++E IL+ P +RQ+ LFSAT+P V+ L+ +Y P+ + + Q
Sbjct: 155 MLDMGFAEELEAILQLTPAERQTALFSATLPPAVQSLTLRYTRQPVRVSIAAEQ--LTTP 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ A K L ++ IVF +T+++ DE+ L A+E+LHG
Sbjct: 213 HIRQIYYEILARDKLDALCRVLDAEMPQ-LAIVFCRTRQEVDEIGERLQGRGYAAESLHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ R+R + FR+G+ VLVATDVAARGLDI V +I+Y++P DPE++VHR GRTG
Sbjct: 272 DLSQAVRDRVMRRFREGQLDVLVATDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AI T +RR ++++ER + E P + DV
Sbjct: 332 RAGRAGVAITFITPRERRMLQTIERVTRTRIERCQMPTLADV 373
>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
Length = 499
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P +RQ++LFSATMP + K+ K++ NP + + E +
Sbjct: 163 MLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTD 220
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + T K I++ LI V A TIVF +TKR DE+S L + + A +HG
Sbjct: 221 LVDQYFVKTKEFEKFDIMTRLIDVQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHG 279
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 280 DLTQQRRMNVLRKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 339
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-- 237
RAG GT++ T ++ +R +E+ + + + PP + E+ QV + L+ +
Sbjct: 340 RAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDL 396
Query: 238 --PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E + AQ L+E+ DA+ A L+ ++ +S
Sbjct: 397 IADTDTERYEAQAQALLEQ--YDAVEVVAAFLNNMTKKDAS 435
>gi|404444837|ref|ZP_11009988.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
gi|403653206|gb|EJZ08205.1| DNA/RNA helicase [Mycobacterium vaccae ATCC 25954]
Length = 562
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 136/224 (60%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK++ KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ L+ +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 225 NITQRYYQVSYPRKMDALTRLLET-EQGDAMIVFVRTKQATEEVAEKLRARGFAAAAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTISQLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAG+ GTA+L T +R + ++ER K P V+DV E
Sbjct: 344 RAGRSGTALLFVTPRERHLLGAIERVTRQKLVESELPSVDDVNE 387
>gi|398334959|ref|ZP_10519664.1| ATP-dependent RNA helicase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 531
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 138/243 (56%), Gaps = 10/243 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+E IL++ P RQ+++FSATM + L +++ NP ID+ +KL A
Sbjct: 164 MLDMGFREDMEFILKDTPADRQTIMFSATMTDDILTLMKRFQKNPQIIDVT---HQKLSA 220
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ +K L+ LI Y +VF TK D V L S +EALH
Sbjct: 221 PKIEQIYYEIQENAKGEALARLIE-YRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALH 279
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QR++ +NGFR G +LVATDVA RG+D+ NV+ + +Y+LP D E +VHR GRT
Sbjct: 280 GDLNQKQRDKVMNGFRNGSIEILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRT 339
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE----SSAEQVVATLN 234
GRAGK+G A Q ++ +ER G K E P ++D+ E S E+V + ++
Sbjct: 340 GRAGKKGIAFSFIVGKQIYNLKKIERINGIKIELGKIPTLDDLEETKIHSYTEKVRSIVD 399
Query: 235 GVH 237
H
Sbjct: 400 AGH 402
>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 492
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P +RQ++LFSATMP + K+ K++ NP + + E +
Sbjct: 156 MLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + T K I++ LI V A TIVF +TKR DE+S L + + A +HG
Sbjct: 214 LVDQYFVKTKEFEKFDIMTRLIDVQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLTQQRRMNVLRKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-- 237
RAG GT++ T ++ +R +E+ + + + PP + E+ QV + L+ +
Sbjct: 333 RAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDL 389
Query: 238 --PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E + AQ L+E+ DA+ A L+ ++ +S
Sbjct: 390 IADTDTERYEAQAQALLEQ--YDAVEVVAAFLNNMTKKDAS 428
>gi|385840089|ref|YP_005863413.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|418961874|ref|ZP_13513758.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|380343682|gb|EIA32031.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
Length = 492
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P +RQ++LFSATMP + K+ K++ NP + + E +
Sbjct: 156 MLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + T K I++ LI V A TIVF +TKR DE+S L + + A +HG
Sbjct: 214 LVDQYFVKTKEFEKFDIMTRLIDVQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLTQQRRMNVLRKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-- 237
RAG GT++ T ++ +R +E+ + + + PP + E+ QV + L+ +
Sbjct: 333 RAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDL 389
Query: 238 --PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E + AQ L+E+ DA+ A L+ ++ +S
Sbjct: 390 IADTDTERYEAQAQALLEQ--YDAVEVVAAFLNNMTKKDAS 428
>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
Length = 512
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 159/272 (58%), Gaps = 11/272 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+++P +RQ++LFSATMP +++++ +++ +P + + E A
Sbjct: 158 MLNMGFIDDIEAILKSVPSERQTLLFSATMPDPIRRIAERFMHSPELVRIKAK--EMTAL 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I+ + + K +LS L+ V A I+F +TKR DE+S AL +E +HG
Sbjct: 216 LIEQFFVKVHEKEKFDVLSRLLDVQAPE-LAIIFGRTKRRVDELSRALDMRGYVAEGIHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F++GK VLVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 275 DLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGKEG AI + +R +E + E + PP ++ L + E++
Sbjct: 335 RAGKEGMAITFVQPREMGYLRIVEETTKKRMEPLKPPTWDEAFAGQLRVAQEKIE---EA 391
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
+ E++ + A +L+E+ +AAA+ ++
Sbjct: 392 ITQENLADYAVFAGQLLEKYDATDIAAAMLKM 423
>gi|347530409|ref|YP_004837172.1| DEAD/DEAH box helicase-like protein [Roseburia hominis A2-183]
gi|345500557|gb|AEN95240.1| DEAD/DEAH box helicase-like protein [Roseburia hominis A2-183]
Length = 566
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 142/238 (59%), Gaps = 9/238 (3%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E ILE +P + RQ++LFSATMP + ++RKY + +NI +V + E
Sbjct: 195 MLNMGFRDDIETILEYIPAEGRQTILFSATMPKPILDITRKYQHDAVNIKVV--KKELTV 252
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ Y + K +L+ L+ Y ++VF TKR DE++ L +E LH
Sbjct: 253 PSIEQYYYDVKRSDKVEVLTRLLDYYNPK-LSLVFCNTKRMVDELAEELKGRGYFAEGLH 311
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QR+R + GFR GK +L+ATDVAARG+D+ +V+ + +Y++P D E +VHR GRT
Sbjct: 312 GDMKQSQRDRVMKGFRSGKTEILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRT 371
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV--VEDVLESSAEQVVATLN 234
GRAG+ G A + ++ + R CK + V+ P+ +DV + AE+V+ +
Sbjct: 372 GRAGRTGRAFTFVKGKEVYKLKDIMR--YCKTKIVAMPIPSTDDVAQIKAEKVMEEIG 427
>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|417787885|ref|ZP_12435568.1| cold-shock DEAD-box protein A [Lactobacillus salivarius NIAS840]
gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|334308062|gb|EGL99048.1| cold-shock DEAD-box protein A [Lactobacillus salivarius NIAS840]
Length = 492
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 13/281 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ +P +RQ++LFSATMP + K+ K++ NP + + E +
Sbjct: 156 MLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK--ELTTD 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + T K I++ LI V A TIVF +TKR DE+S L + + A +HG
Sbjct: 214 LVDQYFVKTKEFEKFDIMTRLIDVQAPE-LTIVFGRTKRRVDELSRGLEARGYNAAGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 273 DLTQQRRMNVLRKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH-- 237
RAG GT++ T ++ +R +E+ + + + PP + E+ QV + L+ +
Sbjct: 333 RAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLKPPTQD---EAFIGQVSSALDDIKDL 389
Query: 238 --PESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276
E + AQ L+E+ DA+ A L+ ++ +S
Sbjct: 390 IADTDTERYEAQAQALLEQ--YDAVEVVAAFLNNMTKKDAS 428
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DVE IL+ +P +RQ+MLFSATMP+ ++KL+R Y++ P+++ + +++
Sbjct: 157 MLHMGFLNDVETILQEVPYRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ 216
Query: 61 GIKLYAISTTATSKRTILSDLITV---YAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I+ + TT K+ L D++ Y ++F +TKR A +++ L + S
Sbjct: 217 -IRQVVVQTTDRGKQQALVDMLNTDRPYL----AVIFCRTKRRASKLNEELQEMGFESGE 271
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ++RE+ + FR+ K +LVATDVAARGLD+ V + +Y++P D E+++HR G
Sbjct: 272 LHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIG 331
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RTGRAG +G A+ + T +R+++R G F
Sbjct: 332 RTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTF 365
>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 654
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 156/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I+E P Q +LFSATMP VK++ ++L NP ID+ G + +
Sbjct: 187 MLKMGFVDDVTWIMEQAPETAQRVLFSATMPPIVKEIVDRFLRNPARIDVAG--ENRTVS 244
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ K +S L+ +IVF +T++D + ++ L+S + ALHG
Sbjct: 245 KVEQQFWVVKGVEKDEAMSRLLETEDTDA-SIVFVRTRQDTERLADWLSSRGFKAAALHG 303
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ ++G +LVATDV ARGLD+P + + +Y++P D E+++HR GRTG
Sbjct: 304 DIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTG 363
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL+ ++Q R +R++ER + E + P+ + V S ++ L +
Sbjct: 364 RAGRAGKAILLVRTNQIRMLRTIERVTKSRMEEIQLPLRDLVAASRLNRLGEELAAQKEQ 423
Query: 240 -SVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
SVE F ++L E DA LAA L Q +RP
Sbjct: 424 TSVEAFVELVEKLQESIDVDAATLAAMLLQRQQGNRP 460
>gi|431931469|ref|YP_007244515.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829772|gb|AGA90885.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 629
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 158/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I P +RQ LFSATMP ++++++ +L P+ I + + +
Sbjct: 179 MLNMGFAEDIDWIFAQAPAERQVALFSATMPPAIRRVAQTHLREPVEIKVAARSE--TVD 236
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + T K +L+ ++ + ++F +TK + E++ L + A+EAL+G
Sbjct: 237 TIEQHHCLVTRYHKLDLLTRVLEIQPFDA-ILIFVRTKTETVELAERLCAHGFAAEALNG 295
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RERT+ FR G+ +LVATDVAARGLD+ V+L+++Y++PNDP +VHR GRTG
Sbjct: 296 DMNQVMRERTVERFRDGRLDILVATDVAARGLDVERVNLVVNYDIPNDPAAYVHRIGRTG 355
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G A+L +R +R++ER + + P E V ES + L +
Sbjct: 356 RAGRAGRAVLFVEPRERGLLRAIERTIRQSVPAMDIPSAEAVSESRIGRFTEDLRTALAD 415
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQLSGFSRP 273
+ ++FF R+ E+ + + AAALA L RP
Sbjct: 416 QDMDFFYRLVGRIAHEQELEVMDIAAALAYLVQRERP 452
>gi|335428124|ref|ZP_08555043.1| DEAD/DEAH box helicase domain-containing protein [Haloplasma
contractile SSD-17B]
gi|335431048|ref|ZP_08557933.1| DEAD/DEAH box helicase domain-containing protein [Haloplasma
contractile SSD-17B]
gi|334887214|gb|EGM25551.1| DEAD/DEAH box helicase domain-containing protein [Haloplasma
contractile SSD-17B]
gi|334893347|gb|EGM31563.1| DEAD/DEAH box helicase domain-containing protein [Haloplasma
contractile SSD-17B]
Length = 482
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 172/335 (51%), Gaps = 54/335 (16%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + +E I+ NLP R +MLFSATMP ++ L +KY++ PL +++
Sbjct: 158 MLNMGFVDQIETIITNLPKDRVTMLFSATMPKDIELLCKKYMNKPLRVEIESESSAIDRI 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
+ Y + + K ++L+DL+ V I+F T++ D+V+ +TSI ++ E +HG
Sbjct: 218 TQERYEVRN-SRDKNSLLNDLLVV-ENPDSCIIFCNTRQMVDDVNEEMTSIKSTCETIHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ Q R+R +N F+ G F LVATDVAARG+DI ++ L+I+Y+LP + E++VHR GRTG
Sbjct: 276 GMEQRDRQRVMNDFKLGYFRYLVATDVAARGIDIDDISLVINYDLPREKESYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
R G+EG AI T ++R +++ +E+ +
Sbjct: 336 RIGREGKAITFVTRNERESLKDIEQYI--------------------------------- 362
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD----- 294
+R I K ++A S F++ ++R I E+G +L +D
Sbjct: 363 ---------ERSIPVKDRPGISAVENAQSAFNKTINTRPEIREEKGA---ELNKDIMKIH 410
Query: 295 -SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
+A + M ++G L ++ D+IG I+I+
Sbjct: 411 INAGKKQKMRPVDIVGTLCNIDGVTKDDIGIINIL 445
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 148/270 (54%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P +RQ++LFSATMP + +++KY + I +V + E
Sbjct: 159 MLNMGFREDIESILKEVPEERQTLLFSATMPKAILDITKKYQKDSKLIKVV--RKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y K +L L+ +++ +IVF TKR DEV+ L +E +HG
Sbjct: 217 NIEQYYYEVRPKQKVEVLCRLLDMHSPK-LSIVFCNTKRMVDEVTGELKGRGYFAEGIHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR G+ +LVATDVAARG+D+ +VD + +Y+LP D E +VHR GRTG
Sbjct: 276 DLKQSQRDRVMKSFRGGRVDILVATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G A + +R ++R K + P + DV + AE+ + + G +
Sbjct: 336 RAGRTGNAFTFVAGKEIYKLRDVQRYCKTKIKARPIPSLNDVQATRAEKSLEEITGLIEE 395
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
+++ + I E AL A A L
Sbjct: 396 NNLDKYVDMLDEFINETDFTALEIAAAFLK 425
>gi|430747243|ref|YP_007206372.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018963|gb|AGA30677.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 466
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 128/212 (60%), Gaps = 2/212 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF VE IL+++P RQ++L SATMP V+ L++ YL NP+++ L+ ++
Sbjct: 169 MLDIGFRPAVETILKSVPKTRQTLLLSATMPPEVRDLAQTYLVNPVDVRLIREDEDATIP 228
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
I+ + A K +L L+ A + IVF +TKR AD V + L S + ++ +HG
Sbjct: 229 AIRQLYLMVAAERKFELLIKLLRREA-APRAIVFCRTKRGADRVGMLLRSEGLLADTMHG 287
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QR R L GFR G+ T+LVATDV RG+D+ V +I+++LP DP +VHR GRTG
Sbjct: 288 NLSQAQRNRVLQGFRSGRLTILVATDVVGRGIDVRGVSHVINFDLPEDPTHYVHRIGRTG 347
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
R G +G A + Q + + +ER + + E
Sbjct: 348 RMGSDGVAFSLVLPDQGKLLDQIERCISRELE 379
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DVE IL+ +P +RQ+MLFSATMP+ ++KL+R Y++ P+++ + +++
Sbjct: 167 MLHMGFLNDVETILQEVPYRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ 226
Query: 61 GIKLYAISTTATSKRTILSDLITV---YAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I+ + TT K+ L D++ Y ++F +TKR A +++ L + S
Sbjct: 227 -IRQVVVQTTDRGKQQALVDMLNTDRPYL----AVIFCRTKRRASKLNEELQEMGFESGE 281
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ++RE+ + FR+ K +LVATDVAARGLD+ V + +Y++P D E+++HR G
Sbjct: 282 LHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIG 341
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RTGRAG +G A+ + T +R+++R G F
Sbjct: 342 RTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTF 375
>gi|348169282|ref|ZP_08876176.1| ATP-dependent RNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 576
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL+++P RQ LFSATMP ++K+S+ YL+ P+ I + A
Sbjct: 157 MLRMGFIEDVEKILQSVPASRQVALFSATMPGAIRKISQNYLNEPVEISV--KTKTSTAT 214
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + A +K L+ ++ V IVF +TK+ +E++ L + ++ A++G
Sbjct: 215 NINQRHVPVRAANKLDALTRILEVETFDA-MIVFVRTKQLTEELAEKLQARGFSAAAING 273
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ R GK +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 274 DIAQAQRERTIGHLRDGKIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRVGRTG 333
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AIL + +R +RS+ER + + P ++ V
Sbjct: 334 RAGRSGEAILFVSPRERHLLRSIERATRQHIQQMELPSIDAV 375
>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 536
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ P ++ + E A+
Sbjct: 176 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAK--EMTAD 233
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 234 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 292
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 293 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 352
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G ++ T ++ + +E + + PP ++ + V T+ +
Sbjct: 353 RAGKGGMSVTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDIEE 412
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + +A+ L+E+ LAA L
Sbjct: 413 NGLDKYLESAEALLEKYSATDLAALL 438
>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
Length = 498
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 151/269 (56%), Gaps = 11/269 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ P +RQ++LFSATMP +K++ +++ NP + + E +
Sbjct: 155 MLNMGFLEDIEAIIKETPAERQTLLFSATMPPEIKRIGEQFMTNPETVRIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ LI V TIVF +TKR DE+S L + + A +HG
Sbjct: 213 LVDQYYVRARDYEKFDIMTRLIDV-QDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R + + F+ G +LVATDVAARGLDI V + +Y++P+DP+++VHR GRTG
Sbjct: 272 DLTQDRRTKIMKKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG GT++ T ++ + +E+ + + PP E+ + QV + N +
Sbjct: 332 RAGHHGTSLTFVTPNEMEYLHEIEKLTRVRMLPLKPPSAEEAFKG---QVASAFNDIDEL 388
Query: 239 ---ESVEFFTPTAQRLIEEKGTDALAAAL 264
+S + + A+ L+E L AAL
Sbjct: 389 IAQDSTDRYKEAAEELLESHDATDLVAAL 417
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/271 (35%), Positives = 153/271 (56%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I+ ++P RQ++LFSATMP +++++ K++ P + + E E
Sbjct: 156 MLNMGFIEDIQTIMASVPDTRQTLLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVE 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + + K LS L+ V + IVF +TKR DE++ AL +E +HG
Sbjct: 214 NIEQFYVKSVEREKFDFLSRLLNVQ-QPELAIVFGRTKRRVDELAKALNIRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ GK +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHP 238
RAGK+G A+ T + + +ER K E + PP E VL + L
Sbjct: 333 RAGKKGVAVTFVTPREMGYLSIVERTTKKKMEALVPPTANEAVLGQKRVAMEQLLEMTEK 392
Query: 239 ESVEFFTPTAQRLIEEK-GTDALAAALAQLS 268
++ + A +++E+ D +AAAL ++
Sbjct: 393 NNLGDYRDFATQMLEKHDAVDLIAAALKTMT 423
>gi|386845669|ref|YP_006263682.1| Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Actinoplanes
sp. SE50/110]
gi|359833173|gb|AEV81614.1| Pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Actinoplanes
sp. SE50/110]
Length = 648
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/189 (47%), Positives = 117/189 (61%), Gaps = 2/189 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL LP +RQ+MLFSATMP + LSR++L NP+ I D
Sbjct: 180 MLDLGFLDDVEKILAMLPEQRQTMLFSATMPDPIVALSRRFLRNPMTIHAGHTTDSGPNP 239
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
K T +K ++S ++ +G T++FT+TKR AD+VS L A A+HG
Sbjct: 240 LTKQVVYRTHPLNKIEMVSRILQARDRG-LTMIFTRTKRAADKVSEELDFRGFAVAAVHG 298
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q RER L FR GK VLVATDVAARGLD+ V +++Y+ P DPET+ HR GRTG
Sbjct: 299 DLGQGARERALRAFRSGKIDVLVATDVAARGLDVSGVTHVLNYDCPEDPETYTHRIGRTG 358
Query: 180 RAGKEGTAI 188
RAG G A+
Sbjct: 359 RAGATGVAV 367
>gi|333989860|ref|YP_004522474.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
gi|333485828|gb|AEF35220.1| cold-shock DEAD-box protein DeaD [Mycobacterium sp. JDM601]
Length = 547
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +++++ +YL +P+ + + AE
Sbjct: 145 MLQMGFAEDVERILADTPEYKQVALFSATMPPAIRRITTRYLHDPVEVTV--EAKTTTAE 202
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ ++ V IVF +TK+ +EV+ L + A+ A++G
Sbjct: 203 NISQRYIEVAGPRKMDALTRVLEVETFEA-MIVFVRTKQATEEVAEKLRARGFAAAAING 261
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT+ + G +LVATDVAARGLD+ + +++Y++P+D E +VHR GRTG
Sbjct: 262 DIAQAQRERTIASLKSGNIDILVATDVAARGLDVERISHVVNYDIPHDTEAYVHRIGRTG 321
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ GTA+L + +R ++++ER K + P VEDV
Sbjct: 322 RAGRSGTALLFVSPRERHLLKAIERATRQKLTESTLPTVEDV 363
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 135/214 (63%), Gaps = 9/214 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DVE IL+ +P +RQ+MLFSATMP+ ++KL+R Y++ P+++ + +++
Sbjct: 167 MLHMGFLNDVETILQEVPYRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ 226
Query: 61 GIKLYAISTTATSKRTILSDLITV---YAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I+ + TT K+ L D++ Y ++F +TKR A +++ L + S
Sbjct: 227 -IRQVVVQTTDRGKQQALVDMLNTDRPYL----AVIFCRTKRRAAKLNEELQEMGFESGE 281
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ++RE+ + FR+ K +LVATDVAARGLD+ V + +Y++P D E+++HR G
Sbjct: 282 LHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIG 341
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RTGRAG +G A+ + T +R+++R G F
Sbjct: 342 RTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTF 375
>gi|417885327|ref|ZP_12529482.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
gi|341595982|gb|EGS38619.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
Length = 498
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 151/269 (56%), Gaps = 11/269 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ P +RQ++LFSATMP +K++ +++ NP + + E +
Sbjct: 155 MLNMGFLEDIEAIIKETPAERQTLLFSATMPPEIKRIGEQFMTNPETVRIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ LI V TIVF +TKR DE+S L + + A +HG
Sbjct: 213 LVDQYYVRARDYEKFDIMTRLIDV-QDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R + + F+ G +LVATDVAARGLDI V + +Y++P+DP+++VHR GRTG
Sbjct: 272 DLTQDRRTKIMKKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG GT++ T ++ + +E+ + + PP E+ + QV + N +
Sbjct: 332 RAGHHGTSLTFVTPNEMEYLHEIEKLTRVRMLPLKPPSAEEAFKG---QVASAFNDIDEL 388
Query: 239 ---ESVEFFTPTAQRLIEEKGTDALAAAL 264
+S + + A+ L+E L AAL
Sbjct: 389 IAQDSTDRYKEAAEELLESHDATDLVAAL 417
>gi|383775706|ref|YP_005460272.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
gi|381368938|dbj|BAL85756.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
Length = 622
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/190 (48%), Positives = 120/190 (63%), Gaps = 4/190 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE IL LP +RQ+MLFSATMP + LSR++L NP+ I G+ E A
Sbjct: 180 MLDLGFLDDVEKILAMLPDQRQTMLFSATMPDPIVALSRRFLRNPVTIH-AGHTAESAAS 238
Query: 61 GI-KLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
+ K T +K +++ ++ +G T++FT+TKR AD V+ L A A+H
Sbjct: 239 PLTKQVVYRTHPMNKLEMVARILQARGRG-LTMIFTRTKRAADRVAEDLDFRGFAVAAVH 297
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q RER L FR GK VLVATDVAARGLD+ V +I+Y+ P DPET+ HR GRT
Sbjct: 298 GDLGQGARERALRAFRTGKIDVLVATDVAARGLDVSGVTHVINYDCPEDPETYTHRIGRT 357
Query: 179 GRAGKEGTAI 188
GRAG G AI
Sbjct: 358 GRAGATGVAI 367
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 148/270 (54%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ +P +RQ++LFSATMP + +++KY + I +V + E
Sbjct: 168 MLNMGFREDIESILKEVPEERQTLLFSATMPKAILDITKKYQKDSKLIKVV--RKELTVP 225
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ Y K +L L+ +++ +IVF TKR DEV+ L +E +HG
Sbjct: 226 NIEQYYYEVRPKQKVEVLCRLLDMHSPK-LSIVFCNTKRMVDEVTGELKGRGYFAEGIHG 284
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR G+ +LVATDVAARG+D+ +VD + +Y+LP D E +VHR GRTG
Sbjct: 285 DLKQSQRDRVMKSFRGGRVDILVATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTG 344
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG+ G A + +R ++R K + P + DV + AE+ + + G +
Sbjct: 345 RAGRTGNAFTFVAGKEIYKLRDVQRYCKTKIKARPIPSLNDVQATRAEKSLEEITGLIEE 404
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
+++ + I E AL A A L
Sbjct: 405 NNLDKYVDMLDEFINETDFTALEIAAAFLK 434
>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
Length = 515
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G ++ T ++ + +E + + PP ++ + V T+ +
Sbjct: 332 RAGKGGMSVTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDIEE 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + +A+ L+E+ LAA L
Sbjct: 392 NGLDKYLESAEALLEKYSATDLAALL 417
>gi|403717110|ref|ZP_10942499.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
gi|403209372|dbj|GAB97182.1| putative ATP-dependent RNA helicase, partial [Kineosphaera limosa
NBRC 100340]
Length = 479
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKL 58
ML +GF DVE IL P RQ+MLFSATMP V L+R+Y+ P +I V + D +
Sbjct: 197 MLDLGFLPDVEKILAQTPASRQTMLFSATMPGAVVALARRYMTQPTHIRAVSDAGDDRQT 256
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTS-IIASEA 116
I+ + A K +LS ++ AKG G TI+F++TKR A +V+ L A+ A
Sbjct: 257 VAAIEQFVYRAHAMDKVELLSRVL--QAKGRGLTIIFSRTKRTAAKVADELVDRGFAAAA 314
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
+HGD+ Q RE+ L FR GK +LVATDVAARG+D+PNV +++Y+ P D +T++HR+G
Sbjct: 315 IHGDLGQGAREQALRAFRNGKVDILVATDVAARGIDVPNVTHVVNYQCPEDEKTYLHRTG 374
Query: 177 RTGRAGKEGTAILM 190
RTGRAG G AI +
Sbjct: 375 RTGRAGLTGVAITL 388
>gi|425733846|ref|ZP_18852166.1| DNA/RNA helicase [Brevibacterium casei S18]
gi|425482286|gb|EKU49443.1| DNA/RNA helicase [Brevibacterium casei S18]
Length = 503
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 122/192 (63%), Gaps = 3/192 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF DVE I+ +P RQ+MLFSATMP V L+R+Y++ P +I N+D L
Sbjct: 171 MLDLGFLPDVERIIAAVPANRQTMLFSATMPGAVITLARRYMNRPTHIRAHDNEDLSLTG 230
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALH 118
+ Y A K +++ L+ +G +TI+FT+TKR AD+++ L+ A ALH
Sbjct: 231 KNTTQYVYRAHAMDKSELVARLLQAEGRG-RTIIFTRTKRTADKLAAELSDRGFAVRALH 289
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QRE+ L FR G VLVATDVAARG+DI +V +++++ P D +T+VHR GRT
Sbjct: 290 GDLGQAQREKALKSFRDGTVDVLVATDVAARGIDIDDVTHVVNFQSPEDEKTYVHRIGRT 349
Query: 179 GRAGKEGTAILM 190
GRAG G A+ +
Sbjct: 350 GRAGNSGVAVTL 361
>gi|397779795|ref|YP_006544268.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
gi|396938297|emb|CCJ35552.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
Length = 521
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 160/271 (59%), Gaps = 6/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL+ P RQ++LFSAT+P + ++S+++ NP I V ++ + +
Sbjct: 160 MLDMGFREDIEKILDETPGDRQTILFSATLPGPILEISKRFQKNPEVIS-VARREVTVPQ 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+LY + + +K IL L+ +Y ++VF+ TKR D+++ L + +E LHG
Sbjct: 219 IEQLY-LEVRSRNKLEILCRLLDMYDPE-LSLVFSNTKRGVDDLTAHLQARGYFAEGLHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR G +LVATDVAARG+D+ +VDL+I+YE+P D E ++HR GRT
Sbjct: 277 DMKQSQRDRVMAKFRAGTIDILVATDVAARGIDVEDVDLVINYEVPQDIEYYIHRIGRTA 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AI + +R+++ + + P DV ES ++V + V E
Sbjct: 337 RAGRTGRAITFVGPREYYKLRTIQDYTKIRIGRIPLPTPGDVEESRTRKLVDRVQQVIDE 396
Query: 240 -SVEFFTPTAQRLIEEKGTD-ALAAALAQLS 268
S+E + A+R++ E T +AAAL +L
Sbjct: 397 GSLERYMTLAERIVSEDYTSLEVAAALLKLE 427
>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 447
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 136/206 (66%), Gaps = 6/206 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ++ I+ LP +RQ++ F+ATMP V +L+ L+NP+ I++ + AE
Sbjct: 155 MLDMGFMPALKTIVSKLPKQRQTIFFTATMPPKVAQLASGLLNNPVRIEVA--PESTTAE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALT-SIIASEALH 118
++ + + KR +L ++ A+G G+T+VFT+TK AD ++ L S I ++A+H
Sbjct: 213 RVEQRLMYVSQGDKRALLEH--SLQAEGVGRTLVFTKTKHGADRLAKELNASGIRTDAIH 270
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
G+ +Q++R R L FR G+ VLVATDVAARG+D+ V +++++LP DPE++VHR GRT
Sbjct: 271 GNKTQNKRNRALESFRSGRLQVLVATDVAARGIDVDGVTHVVNFDLPIDPESYVHRIGRT 330
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLER 204
GRAGKEG A+ S+ T+R++ER
Sbjct: 331 GRAGKEGIALSFCDFSEHGTLRAIER 356
>gi|357060810|ref|ZP_09121574.1| hypothetical protein HMPREF9332_01131 [Alloprevotella rava F0323]
gi|355375643|gb|EHG22926.1| hypothetical protein HMPREF9332_01131 [Alloprevotella rava F0323]
Length = 630
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E ++ ILE +P +R ++LFSATM V+ +++ YL N I +VG+++E AE
Sbjct: 180 MLNMGFSESIDAILEGVPEERNTLLFSATMSKEVENIAKNYLHNHKEI-VVGSRNEG-AE 237
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
+ A K L ++ Y + IVF +T+ + EV+ L +EALHG
Sbjct: 238 KVNHVYYMVQARDKYAALKRVVDYYPRI-YAIVFCRTRMETQEVADNLIRDGYNAEALHG 296
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+ T+ FRQ +LVATDVAARGLD+ ++ +I+Y LP+D E++ HRSGRTG
Sbjct: 297 DLSQAQRDLTMQKFRQHTIQLLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTG 356
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL--NGVH 237
RAGK GT+I + ++ VR++ER +G +FE P +++ V+ L V
Sbjct: 357 RAGKRGTSICIIHQREKGKVRAIERILGKEFEVGVLPEPKEICTKQLYHVIDRLERQEVD 416
Query: 238 PESVEFFTPTAQRLIE 253
+ F P R ++
Sbjct: 417 ENEIAPFMPEVLRKLD 432
>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
gi|423388260|ref|ZP_17365486.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG1X1-3]
gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
gi|401643448|gb|EJS61145.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG1X1-3]
Length = 481
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSRKY+D+P +I++ G +K+
Sbjct: 158 MLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKI 217
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ T K ++L D+ T+ I+F +T+ + D V L + + +
Sbjct: 218 EHTL----FETREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKI 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR+GR
Sbjct: 273 HGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
TGRAG +G AI T + R + +E +G + P E+V++ A
Sbjct: 333 TGRAGNKGKAITFITPYENRFLEEIEEYIGFEIPKALAPSKEEVMKGKA 381
>gi|423416636|ref|ZP_17393725.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG3X2-1]
gi|401110020|gb|EJQ17936.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG3X2-1]
Length = 481
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSRKY+D+P +I++ G +K+
Sbjct: 158 MLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKI 217
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ T K ++L D+ T+ I+F +T+ + D V L + + +
Sbjct: 218 EHTL----FETREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKI 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR+GR
Sbjct: 273 HGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
TGRAG +G AI T + R + +E +G + P E+V++ A
Sbjct: 333 TGRAGNKGKAITFITPYENRFLEEIEEYIGFEIPKALAPSKEEVMKGKA 381
>gi|423451298|ref|ZP_17428151.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG5X1-1]
gi|401146306|gb|EJQ53822.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG5X1-1]
Length = 481
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 136/229 (59%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSRKY+D+P +I++ G +K+
Sbjct: 158 MLNMGFIDQVEAIIDELPKKRMTMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKI 217
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ T K ++L D+ T+ I+F +T+ + D V L + + +
Sbjct: 218 EHTL----FETREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKI 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR+GR
Sbjct: 273 HGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
TGRAG G AI T + R + +E +G + P E+V++ A
Sbjct: 333 TGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAPSKEEVMKGKA 381
>gi|359774481|ref|ZP_09277848.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
gi|359308367|dbj|GAB20626.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia effusa NBRC
100432]
Length = 574
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP + +L++KYL NP + + A+
Sbjct: 162 MLTMGFAEDVERILSDTPDSKQVALFSATMPKAIGRLAKKYLKNPTEVAV--ESKTATAQ 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K L+ ++ V G IVF +TK+ +E++ L + ++ A++G
Sbjct: 220 NITQKYLQVSHQRKLDALTRVLEVETFDG-MIVFVRTKQATEELAERLRARGFSAVAING 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRERT+N + +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 279 DLAQAQRERTINQLKNSTIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ GTA+L + +R +R++E+ E + P V+DV E A+ + A L
Sbjct: 339 RAGRSGTALLFVSPRERHLLRAIEKMTRQPLEEIDLPSVDDVNTQRKEKFADSITANLGS 398
Query: 236 VH 237
H
Sbjct: 399 DH 400
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 156/274 (56%), Gaps = 10/274 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ++LFSATMP+ ++KL+ ++L +P ++ ++ A
Sbjct: 156 MLDMGFMEDIQSILKLVPEERQTLLFSATMPANIQKLASQFLKDPEHVSVIPKHVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K LS L+ + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIDQAYIEVPERQKFEALSRLLDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQHQR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAGKEGTA T + + +ER + P + + +E AE+V+ +
Sbjct: 333 RAGKEGTAWSFVTPREMDHLYFIERVTRHRIPRKPLPTIAEAIEGKQRIIAERVLEIIE- 391
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269
E E+ Q L + LAAA+ L+G
Sbjct: 392 -QGELTEYKGLAIQLLEQYDSVQLLAAAMKILTG 424
>gi|388455441|ref|ZP_10137736.1| ATP-dependent RNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 565
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 151/260 (58%), Gaps = 17/260 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ LP ++Q LFSATMP +++++ YL NP++I++ + +
Sbjct: 160 MLRMGFIEDIETIMAKLPEEKQIGLFSATMPYRIRQIANTYLHNPVSIEI--RAETATVK 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 218 SIEQRFLFASGHQKPDALLRVLAVEEYQG-VIVFVRTKSSTEEVAEVLQQQGMRAMAIHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + FRQG +LVATDVAARGLD+ V +I+Y+LP+D ET+VHR GRTG
Sbjct: 277 DITQALRERIIAQFRQGAIDILVATDVAARGLDVDRVTHVINYDLPHDNETYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQ-----VVATLN 234
RAG+ G A+L T + R + S+ER + V+ P + +++ + +Q + A L
Sbjct: 337 RAGRSGVAVLFVTPKESRLISSIERHTRQRIAKVTVP-NDHMIQVARQQRFMANITARLE 395
Query: 235 GVHPESVEFFTPTAQRLIEE 254
H P+ +R+IEE
Sbjct: 396 HEH-------LPSYKRIIEE 408
>gi|381159935|ref|ZP_09869167.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380877999|gb|EIC20091.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 629
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 155/277 (55%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I E+ P KRQ LFSATMP +K+++R L NP+ + + + + +
Sbjct: 219 MLNMGFAEDIDWIFEHCPEKRQVALFSATMPEAIKRVARVRLKNPVEVRVRASAE--TVD 276
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ L+ + G ++F +TK E++ L + A+EAL+G
Sbjct: 277 TIDQHHCVVARGHKLDALTRLLEMETFDG-MVIFVRTKNATTELADKLKAHGFAAEALNG 335
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RERT+ + G+ +L+ATDVAARGLD+ + +I+Y++P DP ++VHR GRTG
Sbjct: 336 DMNQELRERTIGRLKDGQLDILIATDVAARGLDVERLSHVINYDIPTDPASYVHRIGRTG 395
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G AIL+ +R +R++ER + + PP + S ++ L E
Sbjct: 396 RAGRTGRAILLVEPRERSLLRAIERTIRRNIPAMDPPSAAALSASRIDRFTQDLRSTLSE 455
Query: 240 S-VEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
++FF RL +E+ D +AAAL L RP
Sbjct: 456 QDLDFFYRLVARLSKEQELDPVDMAAALCFLLQRERP 492
>gi|442320812|ref|YP_007360833.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
gi|441488454|gb|AGC45149.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
Length = 497
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 9/221 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DV +++ LP KRQ++ FSATMP + LSR L +P+ +++ AE
Sbjct: 160 MLDMGFIHDVRKVIKALPSKRQTLFFSATMPPEIVDLSRNLLTDPVRVEV--TPVSSTAE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
+ KR +L+ L+ K + +VFT+TK A+ V+ L S +++ A+HG
Sbjct: 218 TVAQQVFFVEREQKRGLLTHLLK-DGKISRALVFTRTKHGANRVAKQLEGSGVSAAAIHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ+ RER L+ FR G VLVATD+AARG+DI + +I+Y+LPN PE +VHR GRTG
Sbjct: 277 NKSQNARERALDDFRSGTLRVLVATDIAARGIDIDGLSFVINYDLPNVPEQYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220
RAG +GTA+ + +R +R +ER + S PVVED
Sbjct: 337 RAGAQGTALSFCDAEERAYLRDIERTI-----RRSVPVVED 372
>gi|336233335|ref|YP_004590081.1| ATP-dependent RNA helicase [Buchnera aphidicola (Cinara
tujafilina)]
gi|335345276|gb|AEH39822.1| ATP-dependent RNA helicase [Buchnera aphidicola (Cinara
tujafilina)]
Length = 603
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 36/291 (12%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I+ LP K Q+ LFSATMP ++++S++++ P+ I
Sbjct: 161 MLRMGFIEDVENIMSKLPKKHQTALFSATMPDIIRRISKRFMVKPVEI------------ 208
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-------------TIVFTQTKRDADEVSLA 107
I +T ++ I VY K + TI+F +TK EV+
Sbjct: 209 -----KIQSTGITRPNIQQSYWMVYGKKTEALIRFLEMEDFSATIIFVKTKSATLEVADV 263
Query: 108 L-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166
L + AL+GD++Q RE+TL+ R GK +L+ATDVAARGLD+ + +I+Y++P
Sbjct: 264 LEKNGYNCAALNGDMNQSLREQTLDRLRNGKLDILIATDVAARGLDVDRISFVINYDIPM 323
Query: 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----L 222
D E++VHR GRTGRAG+ G A+L + +RR +R++ER V V P E + L
Sbjct: 324 DAESYVHRIGRTGRAGRTGRALLFVENRERRLLRNIERIVKLTIPEVILPKSELLSQRRL 383
Query: 223 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273
+ +E++ LN E P +L E + L+AAL +L+ RP
Sbjct: 384 QKFSEKIQKELNSPDLEEYRLLLPKF-KLKEPVNFEKLSAALLKLAQGERP 433
>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
Length = 527
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 150/272 (55%), Gaps = 7/272 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ILE +P +RQ++LFSATMP + +++++ N + + + E
Sbjct: 159 MLNMGFREDIETILEGVPEERQTVLFSATMPQAILDITKRFQKNAEIVKV--TKKELTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDAD-EVSLALTSIIASEALHG 119
I+ Y SK +L+ L+ +Y+ ++VF TK+ D V+ L + LHG
Sbjct: 217 NIEQYYYEVKPKSKEEVLARLLDIYSPK-LSVVFCNTKKQVDILVNGLLGRGYFAAGLHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + GFR GK +LVATDVAARG+D+ V+ + +Y+LP D E +VHR GRTG
Sbjct: 276 DLKQQQRDRVMQGFRSGKTDILVATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+EG + + + ++ ++R K P + DV + E ++ + N +
Sbjct: 336 RAGREGRSFSFVSGKEVYKLKEIQRYCKTKIYAQKVPSLNDVANTKMENILGEIDNIIET 395
Query: 239 ESVEFFTPTAQRLIEEKGTDA--LAAALAQLS 268
E + + + + E A +AAA +LS
Sbjct: 396 EDLTKYLQAIENKVNESDYTAMDMAAAFLKLS 427
>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 710
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 158/280 (56%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I + P RQ LFSATMPS ++++S++YL+NP I V ++ A
Sbjct: 228 MLRMGFAEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGAN 286
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y + K ++ ++ V G I F +TK ++++ L S + A++G
Sbjct: 287 TRQRY-LQVMGPHKLDAMTRILEVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAING 344
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT++ ++G+ +LVATDVAARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 345 DIPQQQRERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTG 404
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G AIL T ++ +RS+E+ E + P E V L AE++ TL
Sbjct: 405 RAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLAS 464
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
E V F EE A +AAALA ++ +P
Sbjct: 465 ---EDVAPFRDLIASYEEEHNVPASEIAAALAVMAQGGQP 501
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 155/269 (57%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+ED+E IL+ P +RQ+ +FSAT+ ++++++KY+ P I + Q
Sbjct: 159 MLDMGFQEDMEAILKETPTERQTAMFSATISREIERIAQKYMKQPEKIMVA--QKALTVP 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y K L ++ + K I+F +TKR DE++ L + ++ A+HG
Sbjct: 217 QISQYYFEVKPHEKVEALCRILDM-DKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R + FR +LVATDVAARG+D+ +V+++++Y++P D E +VHR GRTG
Sbjct: 276 DLKQTQRDRVMKKFRNRTIDLLVATDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238
RAGKEG A + T Q RT+++LE + K P V DV+E + + ++ V
Sbjct: 336 RAGKEGVAYTLATGKQMRTLKALESYIKGKIVRRKIPTVNDVVEKQKDSIADQIHAVIEK 395
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQL 267
+ +T ++L ++ + +AAAL ++
Sbjct: 396 GGLTEYTNFVEKLSDDHNSMDIAAALFKM 424
>gi|397677505|ref|YP_006519043.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395398194|gb|AFN57521.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 458
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 133/219 (60%), Gaps = 7/219 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + I + LP RQ++ FSATMP +++LS ++L +P+ + + AE
Sbjct: 165 MLDLGFIHALRRIDKLLPKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVA--PQSSTAE 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEAL 117
++ + I + K+ +L+ IT+ G + +VFT+TK AD V L + + + A+
Sbjct: 223 RVEQFGIFVNQSEKQALLT--ITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAI 280
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ QRER LN FR G+ +LVATD+AARG+D+P V + +YELPN E +VHR GR
Sbjct: 281 HGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGR 340
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
T RAG++G AI + +R +RS+ER K + + P
Sbjct: 341 TARAGRDGQAISFIANDERSYLRSIERLTRVKLQILPLP 379
>gi|423484523|ref|ZP_17461212.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG6X1-2]
gi|401137984|gb|EJQ45559.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG6X1-2]
Length = 481
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSRKY+D+P +I++ G +K+
Sbjct: 158 MLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKI 217
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ T K ++L D+ T+ I+F +T+ + D V L + + +
Sbjct: 218 EHTL----FETREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKI 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR+GR
Sbjct: 273 HGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
TGRAG +G AI T + R + +E +G + P E+V++ A
Sbjct: 333 TGRAGNKGKAITFITPYENRFLEEIEEYIGFEIPKALAPSKEEVMKGKA 381
>gi|335419959|ref|ZP_08551002.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
gi|334895605|gb|EGM33773.1| Cold-shock DEAD-box protein A [Salinisphaera shabanensis E1L3A]
Length = 609
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 137/227 (60%), Gaps = 9/227 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I E+ PP+RQ LFSATMPS ++++++ +L P I + K
Sbjct: 170 MLRMGFIEDVEWIFEHTPPQRQVALFSATMPSAIRRIAKTHLREPQEITI----QTKTTT 225
Query: 61 GIKL---YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I + Y I TSK L+ L+ IVF +TK+ DE++ L++ A A
Sbjct: 226 AINIRQRYWIVGGGTSKLDALTRLLEAEPFDA-MIVFARTKKSTDELAERLSARGYACAA 284
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
L+GDI Q QRERT+ + G+ ++VATDVAARGLD+ + +I++++P+D E +VHR G
Sbjct: 285 LNGDIVQAQRERTVAKLKNGQLDIIVATDVAARGLDVERISHVINFDIPHDTEAYVHRIG 344
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RTGRAG+EG AIL T ++R +++ER E + P + +V E
Sbjct: 345 RTGRAGREGDAILFVTMREKRLFKAIERATRQAIEPMDLPSIAEVNE 391
>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430842364|ref|ZP_19460279.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431081588|ref|ZP_19495678.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431118220|ref|ZP_19498174.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431592214|ref|ZP_19521450.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|431738949|ref|ZP_19527889.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431740772|ref|ZP_19529683.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
gi|430493445|gb|ELA69748.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430565520|gb|ELB04666.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430568177|gb|ELB07234.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430591839|gb|ELB29866.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430596492|gb|ELB34316.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430602855|gb|ELB40405.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 503
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ +P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKNGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
Length = 573
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 155/277 (55%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE+ P RQ LFSATMP +KK++ KYL NP +I + A
Sbjct: 164 MLRMGFIDDVEWILEHTPKSRQIALFSATMPKEIKKVADKYLVNPKHIKI--ETKTSTAT 221
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
I+ K + ++ V G IVF +TK E++ L++ S AL+G
Sbjct: 222 TIRQRFSIVNRNQKLDAFTRILEVEDFDG-VIVFVRTKVATLELAEKLSARGHSCAALNG 280
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q+QRE + ++G +L+ATDV ARGLD+ + +I+Y++P D E++VHR GRTG
Sbjct: 281 DIPQNQRENIVEKLKRGTLDILIATDVVARGLDVKRISHVINYDIPLDTESYVHRIGRTG 340
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN-GVHP 238
RAG+ G AIL TS +R +R++ERD E + P DV + AE +N +
Sbjct: 341 RAGRSGEAILFVTSRERHLLRAIERDTNSVVEPMDVPSASDVNQKRAEVFKKRINDAITQ 400
Query: 239 ESVEFFTPTAQRLIEEKG--TDALAAALAQLSGFSRP 273
+ + + + I+E +++AAALA L+ S+P
Sbjct: 401 KDLGIYHDIINQTIQENDHPMESIAAALAYLAQGSQP 437
>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384412590|ref|YP_005621955.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932964|gb|AEH63504.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 458
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 133/219 (60%), Gaps = 7/219 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + I + LP RQ++ FSATMP +++LS ++L +P+ + + AE
Sbjct: 165 MLDLGFIHALRRIDKLLPKNRQTLFFSATMPKTIQELSSQFLSDPVTVSVA--PQSSTAE 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEAL 117
++ + I + K+ +L+ IT+ G + +VFT+TK AD V L + + + A+
Sbjct: 223 RVEQFGIFVNQSEKQALLT--ITLKNTPGLDRALVFTRTKHGADRVVRHLEAAGLPAAAI 280
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ QRER LN FR G+ +LVATD+AARG+D+P V + +YELPN E +VHR GR
Sbjct: 281 HGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNYELPNVAEQYVHRIGR 340
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
T RAG++G AI + +R +RS+ER K + + P
Sbjct: 341 TARAGRDGQAISFIANDERSYLRSIERLTRVKLQILPLP 379
>gi|333394485|ref|ZP_08476304.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145287|ref|ZP_14652757.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403063|gb|EJN56338.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 515
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 159/270 (58%), Gaps = 5/270 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ +P RQ++LFSAT+P+ ++K++ +++ +P + + E A+
Sbjct: 155 MLDMGFLEDIEKIVQQVPDTRQTLLFSATIPAAIRKIADRFMHDPKMVQIKAK--ELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ Y + T K +++ L V + TIVF +TKR DE+S L + +E +HG
Sbjct: 213 LLDQYFVQTKEFEKFDVMTRLFDV-QQPELTIVFGRTKRRVDELSKGLRARGYNAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G+ +LVATDVAARGLDI V + +Y++P DP+++VHR GRT
Sbjct: 272 DLSQQKRMSVLRSFKAGRLDILVATDVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTA 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG +GT+I T ++ +R++E+ K + + P ++ L+ + ++ +
Sbjct: 332 RAGHKGTSITFVTPNEMGYLRTIEKLTRLKMQPLKAPTAKEALQGQLSSAIESIQELIDN 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLS 268
+ + + ++L++ LAAAL +++
Sbjct: 392 KDLSNYEAQGEKLLDSYTPLQLAAALLKVT 421
>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
gi|374627718|ref|ZP_09700120.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
gi|167702881|gb|EDS17460.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
gi|373912957|gb|EHQ44800.1| hypothetical protein HMPREF0978_03440 [Coprobacillus sp.
8_2_54BFAA]
Length = 535
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 140/235 (59%), Gaps = 5/235 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLA 59
ML +GF ED+E ILE + RQ++LFSATMP+ +KK+++ Y+ DN ++ ++ Q A
Sbjct: 159 MLNMGFVEDIETILEKVDDDRQTILFSATMPAGIKKIAQNYMHDNFEHVAVLSKQ--TTA 216
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALH 118
+K + + + LI V A I+F +TKR DEV+ + + EA+H
Sbjct: 217 TSVKQFYYEVKQKDRFEAMCRLIDV-ANVQTGIIFCRTKRSVDEVTEQMQQANYNVEAMH 275
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+ R TL F++G L+ATDVAARG+D+ NV +I+YELP D E++VHR GRT
Sbjct: 276 GDLSQNHRMNTLRKFKKGTINFLIATDVAARGIDVENVTHVINYELPQDIESYVHRIGRT 335
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
GRA KEG A + T ++ +R +ER + P ++++ E+ +V+ +
Sbjct: 336 GRADKEGQAYSIITPREKGFLRQIERVTKSSITKATIPTLQEISEAKIGTLVSKV 390
>gi|444919637|ref|ZP_21239637.1| Cold-shock DEAD-box protein A [Cystobacter fuscus DSM 2262]
gi|444708189|gb|ELW49282.1| Cold-shock DEAD-box protein A [Cystobacter fuscus DSM 2262]
Length = 553
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 140/239 (58%), Gaps = 9/239 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ILE P +RQ+ LFSAT+P + ++ ++L P+++ + EKL
Sbjct: 146 MLDMGFAEDLEAILEATPQERQTALFSATLPPRIASIAERHLHAPVHVKIA---KEKLPA 202
Query: 61 G----IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASE 115
G ++ A K L ++ V A IVF +T+ + DE++++L ++
Sbjct: 203 GTGPRVRQVAYIVPRPFKAATLGRVLDVEAPTA-AIVFCRTRTEVDELTVSLNGRGWRAQ 261
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
ALHG + Q QR+R L F+ +L+ATDVAARGLDI + +++Y++PN PE +VHR
Sbjct: 262 ALHGGMDQTQRDRVLKQFKSHAVELLIATDVAARGLDIEKLSHVVNYDVPNAPEAYVHRI 321
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
GRTGRAG+EG AI + + R +R++E+ G K E + P V D+ E V A+L
Sbjct: 322 GRTGRAGREGVAITLAEPREHRLLRNIEKLTGQKIELATVPTVADLRARRLELVRASLR 380
>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
gi|357051322|ref|ZP_09112516.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
gi|355380144|gb|EHG27289.1| hypothetical protein HMPREF9478_02499 [Enterococcus saccharolyticus
30_1]
Length = 502
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 155/280 (55%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPEERQTLLFSATMPPAIKSIGVKFMKNPEHVQIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRSKDYEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK G ++ T ++ + +E + + PP ++ L ++ EQV ++
Sbjct: 332 RAGKGGISVTFVTPNEMSYLHVIENLTKKRMSPMRPPTEKEAFKGQLGAAIEQVEVKMD- 390
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPS 275
++ + A L+E LAA L L ++ PS
Sbjct: 391 --ENGLDKYLQAADDLLERYSAQDLAALL--LKTIAKDPS 426
>gi|424762589|ref|ZP_18190093.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1337RF]
gi|431757804|ref|ZP_19546433.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|402424479|gb|EJV56656.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium
TX1337RF]
gi|430618309|gb|ELB55156.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 503
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ +P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 130/207 (62%), Gaps = 5/207 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + I+ LP RQ++ FSATMP+ V +L+ K L +PL +++ AE
Sbjct: 161 MLDMGFIHSLRKIMAKLPANRQTLFFSATMPADVSELAGKMLRDPLRVEV--TPVSTTAE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ I A KR +L DLI A ++IVFT+TK A+ VS L I + A+HG
Sbjct: 219 RIEQKVIFVPAAEKRHVLVDLIRGDAGMQRSIVFTRTKHGANRVSAQLEQAGIEAAAIHG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ+ R++ L+GFR G VLVATD+AARG+D+ V ++++ELPN+PET+VHR GRT
Sbjct: 279 NKSQNARQKALDGFRAGTVRVLVATDIAARGIDVDGVTHVVNFELPNEPETYVHRIGRTA 338
Query: 180 RAGKEGTAILMFTS--SQRRTVRSLER 204
RAG G A+ + T+ +R +R +E+
Sbjct: 339 RAGASGVAVSLCTADGDERIYLRDIEK 365
>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431036552|ref|ZP_19492322.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|431752972|ref|ZP_19541651.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|431763081|ref|ZP_19551634.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
TX1330]
gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430563092|gb|ELB02323.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|430612933|gb|ELB49957.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430622775|gb|ELB59485.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 503
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 151/271 (55%), Gaps = 15/271 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ +P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATL-- 233
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAE 391
Query: 234 NGVHPESVEFFTPTAQRLIEEKGTDALAAAL 264
NG ++ + TA +L+EE L A L
Sbjct: 392 NG-----LDKYLQTADKLLEEYSAQDLVALL 417
>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
Length = 472
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 135/211 (63%), Gaps = 7/211 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DVE IL+ L P+RQ++LF+AT+P+ ++ L++ Y +P+ I L ++
Sbjct: 158 MLDMGFLPDVETILKALHPERQTLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSI 217
Query: 61 GIKLYAISTTATS---KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEA 116
++ AIS A +TIL++ T G+T++FT+TKR A++++ L S+A
Sbjct: 218 DQEVVAISHGAQKWGLLKTILTEPQTTE---GQTLIFTRTKRGAEDLANQLLAEGFPSDA 274
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD SQ QR R L+ FR G+ +LVATDVAARGLDI V +I+Y+LP PE +VHR G
Sbjct: 275 LHGDKSQSQRNRVLSKFRAGQTRILVATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIG 334
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207
RTGRAG+ G AI + R +R +ER +G
Sbjct: 335 RTGRAGRSGRAISFCHPADRNLLRDIERLLG 365
>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 405
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 141/229 (61%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKL 58
ML +GF DV +++ +P KRQS+LFSATMP + L+ L +P++I + E++
Sbjct: 163 MLDMGFIRDVRKLMKVMPRKRQSILFSATMPKEIATLAEDILKDPVHITIPAKTVAVERI 222
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEAL 117
+ + L T +K T+L+ L+ + + IVFT+TKR A+ V+ L + +EA+
Sbjct: 223 DQRVHL----VTTGNKPTMLAGLLD-QPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAI 277
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ R++ L RQGK VLVATD+ ARG+D+ ++ +I+YELPNDPE +VHR GR
Sbjct: 278 HGNKSQAARQKALENLRQGKARVLVATDILARGIDVDSISHVINYELPNDPENYVHRIGR 337
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
T RAG +G AI S+R ++R++ER +G V+ P V+ + A
Sbjct: 338 TARAGSDGIAISFCDLSERASLRNIERFLGRSLTQVNDPAPSKVVAAVA 386
>gi|345876610|ref|ZP_08828376.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344226322|gb|EGV52659.1| thioesterase superfamily protein [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 628
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 156/271 (57%), Gaps = 7/271 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE P RQ LFSATMPS ++K+++++L++P I + A
Sbjct: 166 MLRMGFIDDVEWILEQTPQTRQIALFSATMPSIIRKVAQRHLNDPTEIKIAAKT--STAT 223
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L+ ++ + +VF +TK E++ L + ASEAL+G
Sbjct: 224 TIRQRYWQVSGLHKLDALTRILECESFDA-MLVFVRTKIATVELAEKLEARGYASEALNG 282
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT+ F+ G+ +LVATDVAARGLD+ + +I+Y++P D E++VHR GRTG
Sbjct: 283 DIPQKQRERTVERFKAGRLDILVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTG 342
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVHP 238
RAG+ G AIL + +RR +R++ER E + P D+ E ++ + + +
Sbjct: 343 RAGRTGDAILFVSPKERRLLRTIERATRQPIERMQMPSAGDINEKRMQRFKDRISDALAG 402
Query: 239 ESVEFFTPTAQRLIEEKGTDAL--AAALAQL 267
+ ++ + + +E D L AAA+A+L
Sbjct: 403 DDLDLYYQIVSAVQQESDADPLDVAAAVARL 433
>gi|374581781|ref|ZP_09654875.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374417863|gb|EHQ90298.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 535
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 142/231 (61%), Gaps = 5/231 (2%)
Query: 1 MLAVGFEEDVELILENLPPK-RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E +L +P + RQ +LFSATMP ++KL++ Y++ P ++ + ++DE
Sbjct: 161 MLDMGFIDDIESLLREVPEEGRQVLLFSATMPPGIRKLAQTYMNAPRSVTV--SRDELTV 218
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I T + K L +I G+ I+F +TKR DE+ ++L + ++ALH
Sbjct: 219 PLIDQVFYETRESIKVDALGRIIDT-EDIGQGIIFCRTKRGVDELVVSLEARGYFADALH 277
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ QR+R + FR GK +LVATDVAARGLDI NV +I++++P DP ++VHR GRT
Sbjct: 278 GDLSQQQRDRVMKRFRDGKTELLVATDVAARGLDINNVTHVINFDIPQDPVSYVHRIGRT 337
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
GR G++G AI + + + R +R +E + + P + D+ E AE +
Sbjct: 338 GRVGRKGQAITLISPKEYRQLRLIENLIKTRIRRQELPSLADISERQAENL 388
>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
Length = 522
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 149/269 (55%), Gaps = 5/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P RQ++LFSATMP +K + K++ NP ++ + E A+
Sbjct: 155 MLNMGFLEDIESIISKVPSTRQTLLFSATMPPAIKSIGVKFMQNPEHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
I Y + + K I++ L+ V TI+F +TKR DE++ L T +E +HG
Sbjct: 213 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIIFGRTKRRVDELARGLETRGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK G ++ T ++ + ++E + + PP ++ + + + E
Sbjct: 332 RAGKGGMSVTFVTPNEMSYLHTIENLTKKRMTPLRPPTEKEAFKGQLGAALEEIESKMDE 391
Query: 240 S-VEFFTPTAQRLIEEKGTDALAAALAQL 267
+ ++ + A L+E LAA L ++
Sbjct: 392 NGLDRYLSAADDLLERYSAQDLAALLVKI 420
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 155/274 (56%), Gaps = 10/274 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ++LFSATMP+ ++KL+ ++L P ++ ++ A
Sbjct: 156 MLDMGFMEDIQSILKLVPEERQTLLFSATMPANIQKLASQFLKEPEHVSVIPKHVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K LS L+ + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIDQAYIEVPERQKFEALSRLLDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQHQR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQHQRDTVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS----AEQVVATLNG 235
RAGKEGTA T + + +ER + P + + +E AE+V+ +
Sbjct: 333 RAGKEGTAWSFVTPREMDHLYFIERVTRHRIPRKPLPTIAEAIEGKQRIIAERVLEIIE- 391
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269
E E+ Q L + LAAA+ L+G
Sbjct: 392 -QGELTEYKGLAIQLLEQYDSVQLLAAAMKILTG 424
>gi|443325427|ref|ZP_21054123.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
gi|442794981|gb|ELS04372.1| DNA/RNA helicase, superfamily II [Xenococcus sp. PCC 7305]
Length = 494
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 153/269 (56%), Gaps = 4/269 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL P RQ+ FSAT+P +K+L ++L +P+ + V QD
Sbjct: 157 MLSMGFIDDVKKILRQSPETRQTACFSATLPREIKELISQFLTSPVVVK-VKQQDAAPTR 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
+ + K L ++ + + I+F +TKR A E+++ L S + HG
Sbjct: 216 IDQKVYMVPRGWQKHQALQPILEI-EEPDTAIIFVRTKRTASELTIKLQEAGHSVDEYHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QRER + FR GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTG
Sbjct: 275 NLSQIQRERLVKRFRDGKVKMIVATDIAARGLDVENLTHVINYDLPDNAETYIHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK GTAI + RR ++ +ER + + E P V +++ AT+ +
Sbjct: 335 RAGKTGTAIALIQPMDRRMLKQIERRLRVRLETAKIPNRAQVEAKRIDKLQATVKATLAG 394
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + F P + L +E A+AAA+ Q+
Sbjct: 395 ERMASFLPLVRELSDEYDPQAIAAAVLQM 423
>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 650
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 154/277 (55%), Gaps = 6/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE ILE+ P RQ+ LFSATMP +++++ ++L P + + A
Sbjct: 160 MLRMGFIEDVEWILEHTPSGRQTALFSATMPDAIRRVAHQHLREPKEVKIRAATSTVSAI 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ + + K L+ ++ K IVF +TK E++ L + A+ AL+G
Sbjct: 220 SQRYWLVR--GVDKLDALTRILDAEEKLDAAIVFVRTKTATTELADKLEARGYAAAALNG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + G ++VATDVAARG+D+P + +I+Y++P D E +VHR GRTG
Sbjct: 278 DMTQGLRERVIEQLKNGSLDIVVATDVAARGIDVPRISHVINYDIPYDTEAYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA-TLNGVHP 238
RAG+EG+AIL + R ++++ER E ++ P E+V Q L+ +
Sbjct: 338 RAGREGSAILFVAPRESRMLKAIERATRQPIEAIALPSREEVAGRRVAQFKQLVLDTLQQ 397
Query: 239 ESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
E + FF L++E DA +AAALA L+ +P
Sbjct: 398 EDLGFFMEVVNGLVDEHEIDAHEIAAALAFLAQRDKP 434
>gi|29375434|ref|NP_814588.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|384512540|ref|YP_005707633.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|422686078|ref|ZP_16744289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422689795|ref|ZP_16747899.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692134|ref|ZP_16750156.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422694449|ref|ZP_16752440.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422696585|ref|ZP_16754542.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|422699736|ref|ZP_16757597.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|422703461|ref|ZP_16761283.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|422707307|ref|ZP_16765002.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422711628|ref|ZP_16768555.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422713329|ref|ZP_16770079.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717645|ref|ZP_16774329.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422720386|ref|ZP_16777004.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422722778|ref|ZP_16779327.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|422726299|ref|ZP_16782750.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|422729834|ref|ZP_16786229.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|422731038|ref|ZP_16787419.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422735346|ref|ZP_16791620.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|422738996|ref|ZP_16794181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|424670976|ref|ZP_18107991.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|424676386|ref|ZP_18113259.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|424679344|ref|ZP_18116169.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|424682393|ref|ZP_18119164.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|424686115|ref|ZP_18122786.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|424689249|ref|ZP_18125835.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|424692828|ref|ZP_18129304.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|424696170|ref|ZP_18132529.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|424699415|ref|ZP_18135635.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|424703855|ref|ZP_18139979.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|424705957|ref|ZP_18141971.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|424716207|ref|ZP_18145521.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|424719149|ref|ZP_18148371.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|424722510|ref|ZP_18151560.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|424726330|ref|ZP_18154998.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|424734532|ref|ZP_18163044.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|424746519|ref|ZP_18174750.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
gi|424757333|ref|ZP_18185087.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX0104]
gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
HH22]
gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
ATCC 29200]
gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
TX1322]
gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
gi|402356926|gb|EJU91644.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV103]
gi|402357040|gb|EJU91755.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV116]
gi|402359536|gb|EJU94161.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
599]
gi|402367689|gb|EJV02027.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV129]
gi|402368059|gb|EJV02386.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV25]
gi|402368986|gb|EJV03284.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV31]
gi|402376373|gb|EJV10318.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV62]
gi|402376784|gb|EJV10706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV37]
gi|402378414|gb|EJV12272.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV41]
gi|402383780|gb|EJV17363.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV63]
gi|402388552|gb|EJV21987.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV68]
gi|402388773|gb|EJV22199.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV65]
gi|402397103|gb|EJV30139.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV72]
gi|402399841|gb|EJV32699.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV81]
gi|402401968|gb|EJV34706.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV73]
gi|402407406|gb|EJV39938.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
R508]
gi|402407938|gb|EJV40436.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV85]
gi|402409246|gb|EJV41678.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
ERV93]
Length = 536
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ P ++ + E A+
Sbjct: 176 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAK--EMTAD 233
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 234 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 292
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 293 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 352
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G ++ T ++ + +E + + PP ++ + V T+ +
Sbjct: 353 RAGKGGMSVTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEE 412
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + +A+ L+E+ LAA L
Sbjct: 413 NGLDKYLESAEALLEKYSATDLAALL 438
>gi|375290654|ref|YP_005125194.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 241]
gi|376245487|ref|YP_005135726.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC01]
gi|371580325|gb|AEX43992.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae 241]
gi|372108117|gb|AEX74178.1| ATP-dependent RNA helicase [Corynebacterium diphtheriae HC01]
Length = 679
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 140/225 (62%), Gaps = 7/225 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE ILE+ P +Q LFSATMP+ +++LSR Y+ +P I + +
Sbjct: 222 MLNMGFQEDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQV--KSQTRTNT 279
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ +K L+ ++ V + I+F +TK + +EV+ L + ++ A++G
Sbjct: 280 NITQRYLNVAHRNKLDALTRILEV-TEFEAMIMFVRTKHETEEVAEKLRARGFSAAAING 338
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q QRERT++ + G+ +LVATDVAARGLD+ + + +Y++PND E++VHR GR G
Sbjct: 339 DIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRAG 398
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
R+G+ AIL T +RR +RS+ER K + P V++V ES
Sbjct: 399 RSGE---AILFVTPRERRMLRSIERATNAKLIEMDLPTVDEVNES 440
>gi|422868322|ref|ZP_16914868.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1467]
gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TX1467]
Length = 457
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ P ++ + E A+
Sbjct: 97 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAK--EMTAD 154
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 155 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 213
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 214 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 273
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G ++ T ++ + +E + + PP ++ + V T+ +
Sbjct: 274 RAGKGGMSVTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEE 333
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + +A+ L+E+ LAA L
Sbjct: 334 NGLDKYLESAEALLEKYSATDLAALL 359
>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase [Nocardioides sp. JS614]
gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
Length = 589
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 136/222 (61%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P + LFSATMP+ ++++S+KYLD+P I + G A
Sbjct: 169 MLNMGFAEDVETILADTPDDKNVALFSATMPAQIRRISKKYLDDPAEITVKGKT--ATAS 226
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I ++ + K L+ ++ V G IVF +TK + + ++ L + +++ A++G
Sbjct: 227 NITQRYLTVSYPQKVDALTRILEVENFEG-MIVFVRTKNETETLAEKLRARGLSAMAING 285
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRERT+N + GK +LVATDVAARGLD+ + +++Y++P D E++VHR GRTG
Sbjct: 286 DVAQAQRERTVNQLKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTG 345
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G AI T +R ++ +E+ + P VEDV
Sbjct: 346 RAGRSGDAISFVTPRERYLLKHIEKATRQPLTQMQLPTVEDV 387
>gi|359778006|ref|ZP_09281280.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
gi|359304860|dbj|GAB15109.1| ATP-dependent RNA helicase DeaD [Arthrobacter globiformis NBRC
12137]
Length = 697
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I + P RQ LFSATMPS ++++S++YL+NP I +
Sbjct: 214 MLRMGFAEDVEQIFQQTPESRQVALFSATMPSQIRRMSKQYLNNPAEISV--KSKTSTGT 271
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK + K ++ ++ V G I F +TK ++++ L S + A++G
Sbjct: 272 NIKQRYLQVMGPHKLDAMTRILEVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAING 330
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT++ ++G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 331 DIPQQQRERTVDALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTG 390
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G AIL T ++ +R++E+ E + P E V L AE++ TL
Sbjct: 391 RAGRAGDAILFMTPREKYLLRAIEKATRQTVEQMHLPTAETVNSLRLGKFAERITETL-- 448
Query: 236 VHPESVEFF 244
E V F
Sbjct: 449 -ESEDVSMF 456
>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
DC2201]
Length = 719
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 35/291 (12%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL P ++Q LFSATMP +++++++YL +P +
Sbjct: 237 MLRMGFSEDVEKILAQTPVEKQVALFSATMPKAIRRIAQQYLRDP--------------Q 282
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKT-----------IVFTQTKRDADEVSLALT 109
I + A +TT T+ R ++ + T IVF +TK +E++ L
Sbjct: 283 EITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVEDYDGVIVFVRTKAATEEIADKLK 342
Query: 110 SI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168
+ + A++GDI Q+ RERT++ R+GK +LVATDVAARGLD+ + L+++Y++P+D
Sbjct: 343 ARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAARGLDVERISLVVNYDIPHDT 402
Query: 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS--- 225
E++VHR GRTGRAG++G AIL T ++ +R++E+ E + P ++V ++
Sbjct: 403 ESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQPVEQMRVPTTDEVNQTRKDN 462
Query: 226 -AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
A+Q+ T + E + F +R E DA +AAALA ++ RP
Sbjct: 463 FAQQIEET---IESEDLGLFRELVERYESEHDVDAVEIAAALAVIAQNGRP 510
>gi|425055862|ref|ZP_18459326.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
gi|403033019|gb|EJY44552.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecium 505]
Length = 503
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 149/269 (55%), Gaps = 11/269 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ +P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPDQRQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + K I++ L V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRAKEYEKFDIMTRLFDVQTPE-LTIVFGRTKRRVDELARGLEARGYRAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK G ++ T ++ + +E + + PP ++ L ++ EQ+ L
Sbjct: 332 RAGKGGMSVTFVTPNEMDYLHVIENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLE- 390
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + TA +L+EE L A L
Sbjct: 391 --ENGLDKYLQTADKLLEEYSAQDLVALL 417
>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 561
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK++ KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ L+ +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 225 NITQRYFLVSYPRKMDALTRLLET-EQGDAMIVFVRTKQATEEVAEKLRARGFAASAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTITQLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAG+ GTA+L T +R + ++ER K P V+DV E
Sbjct: 344 RAGRSGTALLFVTPRERHLLGAIERVTRQKLVESELPSVDDVNE 387
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/280 (35%), Positives = 162/280 (57%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV+ +LE LP +RQ LFSATMP+ ++K+++ +L NP ++ + A
Sbjct: 160 MLRMGFIDDVKWVLEQLPEQRQIALFSATMPAVIRKIAQSHLKNPQHVTI--KDKTTTAP 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + +K L+ ++ G I+F +TK DEV+ L + A+ AL+G
Sbjct: 218 TIRQRFWMVSGRNKIDALTRILEFEPFDG-MIIFVRTKTATDEVAERLEARGYAASALNG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRE+ +N + GK ++VATDVAARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 277 DVKQSQREQIVNRLKSGKIDIVVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG++G AIL ++R + S+E+ + E + P ED+ + +++ TL
Sbjct: 337 RAGRKGDAILFVAPREKRMLYSIEKATNQRVEQLEMPTTEDINNLRIADFKQRISDTLAA 396
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
+ +E F ++ +E A +AAALA L+ +P
Sbjct: 397 ---DGLELFAGIVEQYEQEHNVPAQEIAAALAFLAQGDKP 433
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 142/232 (61%), Gaps = 5/232 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D++ IL+ +P RQ+MLFSATMP+ ++KL++++L NP ++ ++ Q A
Sbjct: 156 MLDMGFMDDIQSILKLVPEDRQTMLFSATMPANIQKLAQQFLKNPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K L+ L+ + + IVF +TKR DE+S AL +++ LHG
Sbjct: 214 LIDQAYIEVHERQKFDALTRLLDMESPE-LAIVFGRTKRRVDELSEALQKQGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA 231
RAGKEG A T + +R +ER K P + + +E ++++A
Sbjct: 333 RAGKEGVAWSFVTPREMDHLRFIERITRHKIARKPLPSIAEAIEGK-QRIIA 383
>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
Length = 513
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G ++ T ++ + +E + + PP ++ + V T+ +
Sbjct: 332 RAGKGGMSVTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEE 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + +A+ L+E+ LAA L
Sbjct: 392 NGLDKYLESAEALLEKYSATDLAALL 417
>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|384517892|ref|YP_005705197.1| DEAD/DEAH box helicase [Enterococcus faecalis 62]
gi|397699239|ref|YP_006537027.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|428766354|ref|YP_007152465.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|430358725|ref|ZP_19425485.1| helicase [Enterococcus faecalis OG1X]
gi|430367031|ref|ZP_19427744.1| helicase [Enterococcus faecalis M7]
gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
TUSoD Ef11]
gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
gi|397335878|gb|AFO43550.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|427184527|emb|CCO71751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|429513550|gb|ELA03129.1| helicase [Enterococcus faecalis OG1X]
gi|429516845|gb|ELA06321.1| helicase [Enterococcus faecalis M7]
Length = 515
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 149/266 (56%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ +P +RQ++LFSATMP +K + K++ P ++ + E A+
Sbjct: 155 MLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAK--EMTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + + K I++ L+ V TIVF +TKR DE++ L + +E +HG
Sbjct: 213 LIDQYYVRSKDFEKFDIMTRLLDVQTPE-LTIVFGRTKRRVDELARGLEARGYKAEGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ G +LVATDVAARGLDI V + +Y++P DPE++VHR GRTG
Sbjct: 272 DLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAGK G ++ T ++ + +E + + PP ++ + V T+ +
Sbjct: 332 RAGKGGMSVTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEE 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
++ + +A+ L+E+ LAA L
Sbjct: 392 NGLDKYLESAEALLEKYSATDLAALL 417
>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
Length = 604
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 141/243 (58%), Gaps = 22/243 (9%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE PP+RQ LFSATMP ++++++++L P I
Sbjct: 163 MLRMGFIDDVEWILEQTPPERQIALFSATMPDAIRRIAQQHLSKPEEIT----------- 211
Query: 61 GIKLYAISTTATSKRTILS------DLITVYAKGGKT---IVFTQTKRDADEVSLALTSI 111
IKL ++ + +R + D +T + T I+F +T+ E++ L +
Sbjct: 212 -IKLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTDGIIIFVRTRIATQELADKLAAR 270
Query: 112 -IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+ AL+GDI Q+ RE+T+ ++G +LVATDVAARGLD+ + +I+Y++PNDPE
Sbjct: 271 GYGTAALNGDIPQNLREKTVENLKKGALDILVATDVAARGLDVERISHVINYDIPNDPEA 330
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
+VHR GRTGRAG+ G AIL + +RR +R++ER G K E + P E V + A +
Sbjct: 331 YVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVTGQKIESMELPTSEQVSDKRAARFK 390
Query: 231 ATL 233
A +
Sbjct: 391 ARI 393
>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
[Legionella longbeachae NSW150]
gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
protein A) [Legionella longbeachae NSW150]
Length = 569
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 150/266 (56%), Gaps = 13/266 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I+ LP K+Q LFSATMP +++++ YL NP I++ + +
Sbjct: 161 MLRMGFIEDIETIMSKLPEKKQIGLFSATMPHRIRQIANTYLHNPAAIEI--RAETATVK 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L ++ V G IVF +TK +EV+ L + + A+HG
Sbjct: 219 SIEQRFLFASGHQKYDALLRVLAVEDYQG-VIVFVRTKSSTEEVAEILQQQGLRAMAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q RER + FRQG +LVATDVAARGLD+ V +I+Y+LP+D ET+VHR GRTG
Sbjct: 278 DITQALRERIIAQFRQGAIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG--VH 237
RAG+ G AIL T + R + S+ER + V+ P + + ++ +A + H
Sbjct: 338 RAGRSGVAILFVTPKEGRLITSIERHTRQRITKVAVPTDHMIHVTRQQRFMANITARLEH 397
Query: 238 PESVEFFTPTAQRLIEE--KGTDALA 261
+ + +R+IEE K DA A
Sbjct: 398 EHIISY-----KRIIEEYIKENDASA 418
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 138/222 (62%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL P +Q LFSATMPS +++L+++YL++P I + A+
Sbjct: 171 MLTMGFAEDVERILAETPDSKQVALFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQ 228
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K L+ + V + IVF +TK+ +E++ L S +++ A++G
Sbjct: 229 NITQRYLQVSHQRKLDALTRFLEV-EEFDAMIVFVRTKQATEELAEKLRSRGLSAVAING 287
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 288 DLAQAQRERTINQLKNGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 347
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L + +R +R++ER + + P V+DV
Sbjct: 348 RAGRSGNALLFVSPRERHLLRAIERATRQELTEIGLPSVDDV 389
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 133/223 (59%), Gaps = 4/223 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ I+ ++P RQ++LFSATMP +++++ K++ P + + E E
Sbjct: 156 MLNMGFIEDIQTIMASVPDTRQTLLFSATMPDAIRRIAEKFMKTPEIVKI--KSKEMTVE 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHG 119
I+ + + + K LS L+ V + IVF +TKR DE++ AL +E +HG
Sbjct: 214 NIEQFYVKSVEREKFDFLSRLLNV-QQPELAIVFGRTKRRVDELAKALNIRGYLAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ +R L F+ GK +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
RAGK+G A+ T + + +ER K E + PP + +
Sbjct: 333 RAGKKGVAVTFVTPREMGYLGIVERTTKKKMEALVPPTANEAV 375
>gi|365903699|ref|ZP_09441522.1| ATP-dependent RNA helicase [Lactobacillus malefermentans KCTC 3548]
Length = 541
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E I++ LP RQ++LFSATMP +K++ +++ +P ++ + E +
Sbjct: 155 MLNMGFLDDIEDIIKQLPEDRQTLLFSATMPPEIKRVGVQFMTDPQHVKIKAK--ELTTD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K +++ L V + T+VFT+TKR DE++ L + + A +HG
Sbjct: 213 LVDQYYVKVKDFEKFDVMTRLFDVQSPD-LTLVFTRTKRRVDELTSGLQARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R + LN F+ GK +LVATDVAARG+D+ N+ + ++++P DP+++VHR GRTG
Sbjct: 272 DLTQKRRMQILNEFKTGKLDILVATDVAARGIDVNNITHVYNFDIPQDPDSYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG G ++ S+ +R +E+ + + PP E+ L S +T+ V
Sbjct: 332 RAGHHGVSLTFVAPSEMDYMREIEKLTKVRLLPLKPPTDEEALVSQLANAKSTVEDLVKS 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
+ ++ A+ L+E+ T L AAL
Sbjct: 392 TDTDKYSEVAKSLLEQYDTVDLVAAL 417
>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8801]
gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8802]
gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
Length = 485
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 152/272 (55%), Gaps = 10/272 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF +DV+ IL+ P R + FSATMP +++L ++L +P+ + + Q
Sbjct: 157 MLSMGFIDDVKKILKQTPDTRSTACFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKI 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIAS-EALHG 119
LY + SK L ++ + A I+F +TK+ A E++ L S + HG
Sbjct: 217 EQHLYNVPR-GWSKLKALQPILELEAPES-AIIFVRTKQTAAELTCKLQEAGQSVDEYHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ QRER + FR+GK ++VATD+AARGLD+ N+ +I+Y+LP++ ET++HR GRTG
Sbjct: 275 NLSQSQRERLVYRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAGK GTAI + RR ++ +ER + + E P V LE Q+ +L G
Sbjct: 335 RAGKTGTAISLVEPIDRRMIKQIERKLRQQLEICQIPSRSQVESKRLEKLQRQIQESLAG 394
Query: 236 VHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + F P + L E A+AAA Q+
Sbjct: 395 ---ERMASFLPIVRELSAEYDPQAIAAAALQM 423
>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase [Arthrobacter sp. FB24]
gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
Length = 747
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 158/280 (56%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I + P RQ LFSATMPS ++++S++YL+NP I V ++ A
Sbjct: 251 MLRMGFAEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEIS-VKSKTTTGAN 309
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG 119
+ Y + K L+ ++ V G I F +TK ++++ L S + A++G
Sbjct: 310 TRQRY-LQVMGPHKLDALTRILEVEEFDG-VIAFVRTKMATEDLADKLKSRGFQAAAING 367
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT++ ++G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 368 DIPQQQRERTVDALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTG 427
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G AIL T ++ +RS+E+ E + P E V L AE++ TL
Sbjct: 428 RAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLAS 487
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
E V F EE A +AAALA ++ +P
Sbjct: 488 ---EDVAPFRDLISSYEEEHNVPASEIAAALAIMAQGGQP 524
>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
Length = 547
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 150/266 (56%), Gaps = 13/266 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA- 59
ML +GF++D+E IL+ P RQ++LFSATMP+++KK+++ Y NP +L+ + + L
Sbjct: 158 MLKMGFQDDIERILQTTPETRQTVLFSATMPAFIKKIAKNYQKNP---ELIKIEAKSLTV 214
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
+ I K+++L L+ + I+F TK AD ++ +L ++ALH
Sbjct: 215 DRITQAYFLVKEKEKQSLLERLLD-FENPSTAIIFVNTKAGADRITESLQKAGFTADALH 273
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q QR +N FR + ++LVATDVAARGLD+ +V++I++Y+LP E +VHR GRT
Sbjct: 274 GDLKQSQRTYVMNRFRSKQLSILVATDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRT 333
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLN 234
GRAGK+G A T +RR + L + + P +DV L++ ++ L
Sbjct: 334 GRAGKKGKAFTFVTPLKRRMLDMLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELA 393
Query: 235 GVHPESVEFFTPTAQRLIEEKGTDAL 260
+P +E + L++E D L
Sbjct: 394 NEYPNHLEAI---KELLVDEGSKDQL 416
>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 556
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 134/216 (62%), Gaps = 5/216 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+ I + +P KRQ+MLFSATMP + L+ +YL NP+ +++ + K A+
Sbjct: 177 MLDLGFIHDLRKISKMVPAKRQTMLFSATMPKTIADLAAEYLTNPVKVEV--SPPGKAAD 234
Query: 61 GIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ Y + + +T IL + I+ G + +VF +TK A+++ L + A+ ++H
Sbjct: 235 KVEQYVHFVSGQNHKTEILKESISANPDG-RAMVFLRTKHGAEKLMKHLEHVGFAAASIH 293
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
G+ SQ QRER L GFR G+ VLVATDVAARG+DIP V + +Y+LP P+ +VHR GRT
Sbjct: 294 GNKSQGQRERALKGFRDGEVRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRT 353
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214
RAG++G AI + R +R +ER +G + S
Sbjct: 354 ARAGRDGIAIAFCAPDEARLLRDIERLMGIEIAVAS 389
>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
Length = 631
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 131/225 (58%), Gaps = 20/225 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE I+E LP +RQ +LFSATMP+ ++++S YL+NP I + Q A
Sbjct: 216 MLRMGFIDDVEWIIEQLPKQRQVVLFSATMPTEIRRISLNYLNNPAEITI--RQKGSDAS 273
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE----- 115
I+ + A K L+ ++ G I+F +TK A+T IA
Sbjct: 274 RIRQRYLMVHAPHKLEALNRVLEAETGEG-VIIFGRTK--------AITVTIAESLELTG 324
Query: 116 ----ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 171
L+GD++Q QRERT+ R+G +LVATDVAARGLD+ V L+I+Y++P D E +
Sbjct: 325 HDVAVLNGDVAQSQRERTIERLRKGSINILVATDVAARGLDVDRVSLVINYDIPFDSEAY 384
Query: 172 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
VHR GRTGRAG+ G AIL T +RR + LER VG E + P
Sbjct: 385 VHRIGRTGRAGRTGDAILFLTPRERRFLGGLERAVGRPIEPMDVP 429
>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
antri DSM 16041]
gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
antri DSM 16041]
Length = 512
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 156/274 (56%), Gaps = 12/274 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E I++ P +RQ++LFSATMP +K++ +++ +P + + E +
Sbjct: 169 MLNMGFLEDIEAIIKETPAERQTLLFSATMPPEIKRIGEQFMTDPETVRIKAK--ELTTD 226
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + K I++ LI V TIVF +TKR DE+S L + + A +HG
Sbjct: 227 LVDQYYVRARDYEKFDIMTRLIDV-QDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHG 285
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R + + F+ G +LVATDVAARGLDI V + +Y++P+DP+++VHR GRTG
Sbjct: 286 DLTQDRRTKIMKKFKHGDLDILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTG 345
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG GT++ T ++ + +E+ + + PP E+ + QV + N +
Sbjct: 346 RAGHHGTSLTFVTPNEMEYLHEIEKLTRVRMLPLKPPSAEEAFKG---QVASAFNDIDEL 402
Query: 239 ---ESVEFFTPTAQRLIE-EKGTDALAAALAQLS 268
+S + + A++L+E TD +AA L ++
Sbjct: 403 IAQDSTDRYKEAAEQLLESHDATDLVAALLNNMT 436
>gi|407648258|ref|YP_006812017.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311142|gb|AFU05043.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 593
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 140/222 (63%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL++ P +Q LFSATMP+ ++K+S++YL++P+ I + A
Sbjct: 175 MLKMGFQEDVERILKDTPAGKQVALFSATMPAAIRKISKQYLNDPVEITV--KSKTSTAT 232
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K L+ ++ V + I+F +TK+ +E++ L + ++ A++G
Sbjct: 233 NITQRWVQVSHQRKLDALTRILEVESFEA-MIIFVRTKQATEELAEKLRARGFSAAAING 291
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI+Q+QRERT+ + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 292 DIAQNQRERTIGHLKSGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 351
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L +R ++S+ER E + P V+DV
Sbjct: 352 RAGRSGEALLFVAPRERHLLKSIERATRHPLEEMQLPSVDDV 393
>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 520
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 120/190 (63%), Gaps = 3/190 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA- 59
ML +GF EDVE IL PP R +MLFSATMP V ++R+Y+ + +I + DE
Sbjct: 201 MLDLGFLEDVEKILSATPPTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDESTTV 260
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
+ ++ A +K +L+ ++ +G TI+FT+TKR A V+ L + A+ ALH
Sbjct: 261 QSVRQVVYRAHALNKIEVLARILQARGRG-LTIIFTRTKRTAARVAEDLAARGFATGALH 319
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q RE+ L FR GK VLVATDVAARG+D+ NV +I+Y+ P D +T+VHR GRT
Sbjct: 320 GDLGQGAREQALRAFRHGKIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRT 379
Query: 179 GRAGKEGTAI 188
GRAG GTAI
Sbjct: 380 GRAGHSGTAI 389
>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal, partial [Dechloromonas aromatica RCB]
gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
Length = 606
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 154/280 (55%), Gaps = 12/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE P + Q+ LFSATMP ++++++KYL P I +
Sbjct: 161 MLRMGFIDDVEWILERTPAQHQTALFSATMPEQIRRVAQKYLVEPREIKI--KSATATVA 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K L+ ++ V I+F +TK E++ L++ A+ AL+G
Sbjct: 219 AIRQVYWQVSGMHKLDALTRILEVEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNG 278
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q RER + + G +++ATDVAARG+D+P V +++Y++P D E +VHR GRTG
Sbjct: 279 DLNQQMRERVIEQLKSGALDIVIATDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTG 338
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA----EQVVATLNG 235
RAG+ G AIL + R +R++ER ++ P DV +VV LN
Sbjct: 339 RAGRTGNAILFVAPREIRMLRTIERATRSPIAPLTLPSRADVTNKRVADFKSKVVEVLNA 398
Query: 236 VHPESVEFFTPTAQRLIEEK--GTDALAAALAQLSGFSRP 273
E ++FF+ ++ EE+ G + +AAALA ++ +P
Sbjct: 399 ---EGLDFFSNIVSQIAEEQNVGAEEVAAALAMMAQEGKP 435
>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 516
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 120/193 (62%), Gaps = 7/193 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE---- 56
ML +GF D+E IL P RQ+MLFSATMPS + LSRKYL P ++ + DE
Sbjct: 151 MLDLGFLPDIERILTRTPDDRQTMLFSATMPSEIVSLSRKYLRRPTHV-RASDDDEIDGS 209
Query: 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE 115
+ I +A T K +L+ L+ + G+++VF QTKR D V+ L + A
Sbjct: 210 AITGQITQHAFRTHQMDKIEMLARLLQA-SDHGQSMVFCQTKRACDRVAGDLEARGFAVA 268
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
A+HGD+ Q QRER L FR GK +LVATDVAARGLD+ +V +++YE P D +T+ HR
Sbjct: 269 AVHGDLGQSQRERALRAFRNGKINILVATDVAARGLDVDDVTHVVNYETPEDEKTYTHRI 328
Query: 176 GRTGRAGKEGTAI 188
GRTGRAG+ GTA+
Sbjct: 329 GRTGRAGRSGTAV 341
>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
Length = 559
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 4/224 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +KK++ KYL +P+ + + + AE
Sbjct: 167 MLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITAKYLHDPVEVTV--KSKTQTAE 224
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + K L+ L+ +G IVF +TK+ +EV+ L + A+ A++G
Sbjct: 225 NITQRYFLVSYPRKMDALTRLLET-EQGDAMIVFVRTKQATEEVAEKLRARGFAASAING 283
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT+ + G +LVATDVAARGLD+ + ++++++P+DPE++VHR GRTG
Sbjct: 284 DIPQAVRERTIAQLKDGTIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTG 343
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223
RAG+ GTA+L T +R + ++ER K P V+DV E
Sbjct: 344 RAGRSGTALLFVTPRERHLLGAIERVTRQKLVESELPSVDDVNE 387
>gi|378549072|ref|ZP_09824288.1| hypothetical protein CCH26_03255 [Citricoccus sp. CH26A]
Length = 631
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 158/277 (57%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E+V+ IL P ++Q+ LFSATMP ++++S KYL++P+ + + A
Sbjct: 193 MLRMGFAEEVDQILSATPDQKQTALFSATMPRAIQRISGKYLNDPVEVTVAAKN--TTAG 250
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + T K ++ ++ G I F +T+ +E++ L + + A+ G
Sbjct: 251 NIRQRFLQVTHQWKLEAMTRILETEEHDG-VIAFVRTRNATEELTTKLNARGFRAAAISG 309
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q+QRE+T+ R G+ +LVATDVAARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 310 DVAQNQREKTVENLRAGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTG 369
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+L T ++ +RS+E+ E + P V DV S ++ + + E
Sbjct: 370 RAGRSGDAVLFMTPREKYLLRSIEKATRQTVEQMPMPSVADVNSSRLDKFSSQITQTLAE 429
Query: 240 S-VEFFTPTAQRLIEEK--GTDALAAALAQLSGFSRP 273
+E F +EE + +AAALA+++ RP
Sbjct: 430 GELEVFRDLVDSYVEENDVAPEDVAAALAKMAQGGRP 466
>gi|423613596|ref|ZP_17589456.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD107]
gi|401241661|gb|EJR48048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD107]
Length = 481
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 135/231 (58%), Gaps = 14/231 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSR Y+D+P +I++ A
Sbjct: 158 MLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRTYMDSPTHIEI-------KAA 210
Query: 61 GIKLYAISTT-----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
GI I T K ++L D+ T+ I+F +T+ + D V L +
Sbjct: 211 GITTDKIEHTLFEVREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFRQLKRVNYPC 269
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ +HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR
Sbjct: 270 DKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR 329
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
+GRTGRAGK G AI T + R + +E +G + + P E+V++
Sbjct: 330 TGRTGRAGKNGKAITFITPYENRFLEEIEEYIGFEIQRAHAPSKEEVMKGK 380
>gi|340374345|ref|XP_003385698.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3,
chloroplastic-like [Amphimedon queenslandica]
Length = 588
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 165/288 (57%), Gaps = 14/288 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
+L F+ ++ +L + P +Q +LFSATMP VK++ R+Y+ + IDL + + +L
Sbjct: 211 LLTPNFKIQIDDVLADTPSDKQMLLFSATMPPNVKEVIRQYMKQSVVIDLTASSN-RLPP 269
Query: 61 GIKLYAIS-TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
IK + K + DLI VY+ + IVFT TK A ++ L+ + +++ +LH
Sbjct: 270 AIKHKVLRLDRGMDKFGTILDLINVYSPQ-RAIVFTTTKIQASDLGSFLSRNGVSATSLH 328
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGR 177
GD+SQ RE L FR GK ++ ATDVAARG+DIP +D ++ E P+ +++VHRSGR
Sbjct: 329 GDLSQQMRETCLERFRSGKIKIIAATDVAARGIDIPEIDFVLQIEPPPSGIDSYVHRSGR 388
Query: 178 TGRAGKEGTAILMFTSSQRRT--VRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
TGR G GT+IL+ +SSQ +R L+R V + E + P ++V+ S + V ++
Sbjct: 389 TGRKGLPGTSILLLSSSQDSQYFLRELKRVV--QVEEIKRPSRDEVITRSLDSAVKSIKA 446
Query: 236 VHPES-VEFFTPTAQRLIEEKGTDALAAALAQLSG---FSRPPS-SRS 278
E + P A+ LI E G ALA+A+ + G + RP S SRS
Sbjct: 447 KKDEKLINAALPLAEELISEDGAKALASAIISICGIRVYDRPESMSRS 494
>gi|333378025|ref|ZP_08469758.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
Length = 374
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 135/217 (62%), Gaps = 4/217 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D++ +L LP ++Q++ FSATMPS + LSR L +PL +++ + +
Sbjct: 160 MLDMGFIHDIKRLLPKLPKEKQTLFFSATMPSTIASLSRSILRDPLKVEVT--PASSVID 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
IK Y K+ +L +L+ K +VF++TK AD+++ L + I SEA+HG
Sbjct: 218 TIKQYLYFVEKQEKKDLLINLLK-KDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ+ R+R L F+ K VL+ATD+AARG+D+ ++L+I+Y+LP+ PET+VHR GRTG
Sbjct: 277 NKSQNARQRALTNFKSQKTRVLIATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG GTA+ ++ + + +++ G K +S P
Sbjct: 337 RAGNSGTALTFCSAEENAMLNDIQKLTGKKLNQLSIP 373
>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 634
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 158/274 (57%), Gaps = 7/274 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL P ++ + FSATMP+ ++ L+++++ +P + +V L
Sbjct: 160 MLDMGFIEDIENILSRTPADKRMLCFSATMPAPIQNLAQRFMKDPKIVRVVSQDMTNLLT 219
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHG 119
Y + + K L +I V A +VF +TK DEV+ L + ++ALHG
Sbjct: 220 NQVCYEVRES--DKLEALCRVIDV-AVDFYGLVFCRTKLQCDEVTEKLVARGQDADALHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QRE LN FR+ + +VLVATDVAARG+DIP++ +I+Y +P +PE ++HR GRTG
Sbjct: 277 DLSQKQREAILNRFRRRQLSVLVATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA-TLNGVHP 238
RAG+ GTA+ T + ++ ++R + + P + D++E+ ++ T + +
Sbjct: 337 RAGRSGTAVTFITPREYSKLKYIQRIAHTEIHRETVPAISDIMEAKRNRIATETESLLTV 396
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272
+ F P A+ L+E + + AAL L+G ++
Sbjct: 397 AESDQFRPLARHLLESHAAEDVVAAL--LTGLNK 428
>gi|377809005|ref|YP_005004226.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361055746|gb|AEV94550.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 518
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+E I+E P RQ++LFSATMP +KK+ K++ +P + + E A+
Sbjct: 155 MLDMGFLPDIEQIIEKTPNDRQTLLFSATMPQAIKKIGVKFMHDPKQVTV--KSKELTAD 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-LHG 119
+ Y + + K IL+ ++ V A ++F +TKR DEVS L + + A +HG
Sbjct: 213 LVDQYYVRSKEFEKFDILTRVLDVQAPK-LAVIFGRTKRRVDEVSKGLVARGYNAAGIHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R L+ FR G +LVATDVAARGLDI V + +Y++ DPE++VHR GRTG
Sbjct: 272 DLTQQRRMSILHQFRNGDLDILVATDVAARGLDITGVTHVYNYDITQDPESYVHRIGRTG 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG-VHP 238
RAG GT++ T+ + +R +ER + + PP +D A + V
Sbjct: 332 RAGAHGTSVTFVTNWEMDYLRDIERLTKKRLLPLKPPTEQDAFAGRAAAAEDNIKDLVKH 391
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAAL 264
V ++ A L+EE LAAAL
Sbjct: 392 TDVTKYSEQADHLLEEYDAKTLAAAL 417
>gi|398384210|ref|ZP_10542256.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397723230|gb|EJK83737.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 578
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL++ P R+++LFSATMP + ++++Y + L I VG +E+
Sbjct: 159 MLDMGFREDLEGILDSAPEGRRTLLFSATMPKPIVAMAKRYQSDALRISTVG--EERGHG 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I AI+ + + +L+ Y + I+F T+ + + +LT A+ AL G
Sbjct: 217 DISYQAITVAPSDIENAVVNLLR-YHEAETAILFCATRDNVRHLHSSLTERGFAAVALSG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ++R L R + V VATDVAARG+D+P++ L++H ELP D ET HRSGRTG
Sbjct: 276 EHSQNERNHALQALRDKRARVCVATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAGK+GTA+L+ +RR V S+ R E+ +PP E +LE ++ +TL
Sbjct: 336 RAGKKGTAVLIVPYPRRRRVESMLRGAKIPVEWGTPPSKEAILEQDNARLRSTL 389
>gi|365875004|ref|ZP_09414534.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
Ag1]
gi|442589352|ref|ZP_21008160.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
R26]
gi|365757116|gb|EHM99025.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
Ag1]
gi|442560962|gb|ELR78189.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
R26]
Length = 560
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML++GF++D+E I+ P +Q+ LFSATM V+++S+ YL P I VG+ +E + +
Sbjct: 158 MLSMGFKDDLETIISETPETKQTFLFSATMSKEVERISKNYLTKPHRIS-VGSINE-VKK 215
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
IK K+ L LI +I+F +T+ + EV+ + + A++ALHG
Sbjct: 216 NIKHEYYVVGYRQKKEALKRLID-NNPNQYSIIFCRTRMETQEVADFLMQNGYAADALHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ QR+ + FR +LVATDVAARGLD+ ++ +IH+ LP+DPE FVHRSGRTG
Sbjct: 275 DLSQAQRDTVMKKFRLKNIDILVATDVAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK+G +I + + R ++ ++ + + P ++++++ E V L H
Sbjct: 335 RAGKDGISIALIKPEESRKLKQIKSQSKIEINEMKIPTGKEIIKAQVEGVFEKLFSEHEN 394
Query: 240 SVEF 243
EF
Sbjct: 395 YFEF 398
>gi|418063902|ref|ZP_12701506.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373556194|gb|EHP82728.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 417
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 138/235 (58%), Gaps = 10/235 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ++ I++ LP KRQS+ FSATMP + L+ +YL NP+ + + AE
Sbjct: 161 MLDLGFIHALKRIVKMLPAKRQSLFFSATMPKNIAGLADQYLSNPVQVAV--TPVATTAE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
+ I +K+ +L+ ++ K + +VFT+TK AD V L + + S A+HG
Sbjct: 219 RVDQQVIFCHTGAKQALLNHVLR-DPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ QRER L FR G + VLVATD+AARG+D+ V +++Y+LPN PE++VHR GRT
Sbjct: 278 NKSQPQRERALAAFRDGSYRVLVATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTA 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLER------DVGCKFEFVSPPVVEDVLESSAEQ 228
RAG EG AI +R +R +ER VG E PP ++ +++AE+
Sbjct: 338 RAGAEGQAISFCNDEERAYLRDIERTTRQKIPVGGFPEGFVPPTRQEAQDNAAEE 392
>gi|311743209|ref|ZP_07717016.1| DeaD protein, partial [Aeromicrobium marinum DSM 15272]
gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
Length = 567
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 141/235 (60%), Gaps = 4/235 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL + P +Q LFSATMP +++L++KYL++P +D+ +
Sbjct: 161 MLTMGFAEDVERILADTPEDKQVALFSATMPPAIRRLAKKYLNDP--VDVATPAATRSTT 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ IS K L+ L+ V G I+F +TK+ +E++ L S + AL+G
Sbjct: 219 TVRQRWISVPHHGKFDALTRLLEVE-NGDGMIIFVRTKQATEELAEKLRSRGFDAAALNG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRER + + G +LVATDVAARGLD+ + +I++++P+D E++VHR GRTG
Sbjct: 278 DLVQAQRERIVGQLKGGSLDILVATDVAARGLDVDRITHVINHDIPHDAESYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
RAG+ G A+L T +RR + ++E+ G E +S P E+V +E+ A +
Sbjct: 338 RAGRSGEAVLFVTPRERRMLSAIEKVSGRPVEEMSVPSAEEVNTQRSERFAAAIT 392
>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
gi|423595372|ref|ZP_17571402.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD048]
gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
gi|401222048|gb|EJR28650.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD048]
Length = 481
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSRKY+D+P +I++ G +K+
Sbjct: 158 MLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKI 217
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ T K ++L D +T I+F +T+ + D V L + + +
Sbjct: 218 EHTL----FETREEEKLSLLKD-VTTTENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKI 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR+GR
Sbjct: 273 HGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
TGRAG G AI T + R + +E +G + P E+V++ A
Sbjct: 333 TGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAPSKEEVMKGKA 381
>gi|433460289|ref|ZP_20417922.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
gi|432191745|gb|ELK48677.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
Length = 470
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 160/273 (58%), Gaps = 10/273 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+ IL+ LP +RQ++LFSATMP ++ ++ +++P + + E E
Sbjct: 136 MLNMGFIDDIRDILKALPEERQTLLFSATMPKEIRDIATTLMNSPEEVKVKAK--EMTVE 193
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + K L+ L+ ++ IVF +TKR DEV+ L + ++E +HG
Sbjct: 194 NIEQFFVEIPEKHKFDTLTRLLDIHDPS-LAIVFGRTKRRVDEVADGLQARGFSAEGIHG 252
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R TLN F++G+ +LVATDVAARGLDI +V + ++++P DPE++VHR GRTG
Sbjct: 253 DLTQGKRMSTLNKFKRGRIEILVATDVAARGLDISDVTHVYNFDIPQDPESYVHRIGRTG 312
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT---LNGV 236
RAG++G +I T ++ + +E+ K E + P E+ + +Q VA L +
Sbjct: 313 RAGRKGKSISFVTPREKDQLHLIEKITKKKVERLKVPSSEEA--ARGQQKVAVEKLLEMI 370
Query: 237 HPESVEFFTPTAQRLIEEK-GTDALAAALAQLS 268
++ + A L+++ TD +AAAL ++
Sbjct: 371 EKNDLKNYKQAADELLQQHDSTDLIAAALKMMT 403
>gi|374320874|ref|YP_005074003.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
gi|357199883|gb|AET57780.1| ATP-dependent RNA helicase [Paenibacillus terrae HPL-003]
Length = 541
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 134/214 (62%), Gaps = 9/214 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DVE IL+ +P +RQ+MLFSATMP+ ++KL+R Y++ P+++ + +++
Sbjct: 157 MLHMGFLNDVETILQEVPYRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQ 216
Query: 61 GIKLYAISTTATSKRTILSDLITV---YAKGGKTIVFTQTKRDADEVSLALTSI-IASEA 116
I+ + TT K+ L D++ Y ++F +TKR A ++ L + S
Sbjct: 217 -IRQVVVQTTDRGKQQALVDMLNADRPYL----AVIFCRTKRRAAALNEQLQEMGFESGE 271
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
LHGD+SQ++RE+ + FR+ K +LVATDVAARGLD+ V + +Y++P D E+++HR G
Sbjct: 272 LHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIG 331
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
RTGRAG +G A+ + T +R++++ G F
Sbjct: 332 RTGRAGGKGVAVTLATPRDVPELRNIQKVAGVTF 365
>gi|423471617|ref|ZP_17448361.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG6O-2]
gi|402431428|gb|EJV63496.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BAG6O-2]
Length = 481
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 135/232 (58%), Gaps = 14/232 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSRKY+D+P +I++ A
Sbjct: 158 MLNMGFIDQVEAIIDELPKKRMTMLFSATLPEDVEKLSRKYMDSPTHIEI-------KAA 210
Query: 61 GIKLYAISTT-----ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IAS 114
GI I T K ++L D+ T+ I+F +T+ + D V L +
Sbjct: 211 GITTDKIEHTLFEMREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFQQLKWVNYPC 269
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHR 174
+ +HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR
Sbjct: 270 DKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHR 329
Query: 175 SGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
+GRTGRAG G AI T + R + +E +G + P E+V++ A
Sbjct: 330 TGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAPSKEEVMKGKA 381
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 12/244 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF DV +++ LPPKRQ++ FSAT+P + L+R L +P+ +++ + AE
Sbjct: 160 MLDMGFIHDVRRVIKALPPKRQTLFFSATLPPDIVDLARSILTDPIRVEV--SPASSTAE 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
+ KR +L+ L+ + +VFT+TK A+ V+ L ++S A+HG
Sbjct: 218 TVSQQVYFVEREQKRGLLTHLLK-EGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ+ RER L+ FR G VLVATD+AARG+DI + +++Y+LPN PE +VHR GRTG
Sbjct: 277 NKSQNARERALDEFRSGTLRVLVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS---AEQVVATLNGV 236
RAG GTA+ + +R +R +ER + PVVED S A + V+ G
Sbjct: 337 RAGASGTAVSFCDAEERAYLRDIERTIRRNV-----PVVEDHPYRSGQPAPRPVSHATGA 391
Query: 237 HPES 240
PE+
Sbjct: 392 APEA 395
>gi|409399600|ref|ZP_11249870.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131219|gb|EKN00931.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 414
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 135/214 (63%), Gaps = 8/214 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF D+ ++ LP +RQS LFSATMP+ + KL+ L P+ +++ V + ++
Sbjct: 165 MLDLGFMPDIRKVVNVLPARRQSALFSATMPAEIAKLANGLLREPVRVEIEAVASTPSRI 224
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEAL 117
+ + KR +L L+ + KT+VFT+TKR AD V+L L +S I++ AL
Sbjct: 225 EQSVYF----AEGPEKRNLLIKLLH-QPEFSKTVVFTRTKRGADRVALMLNSSKISAAAL 279
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG++SQ+QR+R L+ F+ G+ LVATD+AARG+D+ V +I++ELPN+PE++VHR GR
Sbjct: 280 HGNLSQNQRQRALDAFKAGEVRALVATDIAARGIDVNAVSHVINFELPNEPESYVHRIGR 339
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
T R G +G A+ +++ + +E+ G K +
Sbjct: 340 TARNGADGVAVAFCDATELPYLTQIEKLTGIKMK 373
>gi|393725579|ref|ZP_10345506.1| putative helicase [Sphingomonas sp. PAMC 26605]
Length = 571
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 192/363 (52%), Gaps = 20/363 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+ELIL+ P +R+++LFSATMP + L+++Y + L I VG +++
Sbjct: 159 MLDMGFREDLELILDASPSERRTLLFSATMPKSIVALAKRYQKDALRISTVG--EDRGHG 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ A++ + +L+ ++ + ++F T+ + + L A+ AL G
Sbjct: 217 DIEYQAVTVAPADIENAVVNLLRLH-EAETAMLFCATRDNVRHLHAGLIERGFAAVALSG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ++R + R + V VATDVAARG+D+P++ L+IH ELP D ET HRSGRTG
Sbjct: 276 EHSQNERNAAMQALRDKRARVCVATDVAARGIDLPSLSLVIHVELPRDAETMQHRSGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAGK+GTAIL+ ++R V + R E+++ P V+D+ ++ +++ L E
Sbjct: 336 RAGKKGTAILIVPYQRKRRVEMMLRGARIAVEWMNAPTVDDIRKADKSRLMTMLMEDV-E 394
Query: 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI-------------NHEQGW 286
+ AQ+L+E+K + +AAAL + S +R P+ +I +H G+
Sbjct: 395 VDDDDRALAQQLLEKKSPEDIAAALVR-SYRARMPAPEEMIEAGGSSPREAGKEHHRDGF 453
Query: 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRV-CIDTVILLYFYA 345
+ R R R ++ + +E+G I I A++ + + + I F A
Sbjct: 454 DDIVWFRMDIGRRQNADPRWILPLICRRGHITKNEVGAIRIAANETMFQVPSGIAGKFMA 513
Query: 346 SVR 348
+V+
Sbjct: 514 AVK 516
>gi|410938346|ref|ZP_11370199.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
gi|410786575|gb|EKR75513.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
Length = 513
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+E IL++ P RQ+++FSATM + L +K+ ++P ID+ +KL A
Sbjct: 159 MLDMGFREDMEFILKDTSPDRQTVMFSATMTEDILTLMKKFQNHPQIIDVT---HQKLSA 215
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
I+ +K L+ LI Y +VF TK D V L S +EALH
Sbjct: 216 PKIEQIYYEIQENAKGEALARLIE-YRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALH 274
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD++Q QR++ +NGFR+G +LVATDVA RG+D+ NV+ + +Y+LP D E +VHR GRT
Sbjct: 275 GDLNQKQRDKVMNGFRKGSIEILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGRT 334
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLES 224
GRAGK+G A Q ++ +ER G K E P ++D+ E+
Sbjct: 335 GRAGKKGIAFSFIVGKQIYNLKKIERINGIKIEAGKIPTLDDLEET 380
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 147/250 (58%), Gaps = 7/250 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+ IL NLP RQS+L+SAT ++ L++K+L+NP+ I + N A
Sbjct: 166 MLDMGFMPDLLRILSNLPKSRQSLLYSATFSENIRSLAQKFLNNPVEITVASNNST--AS 223
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK S + + K L ++T A I+F+ K + L + +A ++LHG
Sbjct: 224 TIKQEVYSVSESDKNAALVYILTSRA-FNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHG 282
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D SQ +R + L+ F+ K +LVATDVAARGLDI +VD +I+YELP E +VHR GRTG
Sbjct: 283 DKSQLERTKALDLFKSSKCNILVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTG 342
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS---PPVVEDVLESSAEQVVATLNGV 236
RAGK+G AI + +S + +++ +E G KF+ +S P V ++ + + + +A++
Sbjct: 343 RAGKKGIAISLCSSEEGKSLSEIETLTGLKFQKLSLSIPDVFKNGVSHNMKTSLASIKAE 402
Query: 237 HPESVEFFTP 246
+ ++ F+ P
Sbjct: 403 YSKNKFFYQP 412
>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
Length = 702
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 153/255 (60%), Gaps = 7/255 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+EDVE IL + P +Q LFSATMP+ +++LS++YL P I + + A+
Sbjct: 216 MLQMGFQEDVERILADTPDDKQVALFSATMPASIRRLSKQYLTEPEEITV--KSQTRTAD 273
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + +K L+ ++ V + I+F +TK + +E++ L + ++ A++G
Sbjct: 274 NIRQRFLMVSHRNKLDALTRILEV-EEFEAMIMFVRTKHETEELAEKLRARGFSAAAING 332
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ + G+ +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 333 DIPQTLRERTIDQLKDGRLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 392
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG+ G A+L T + R +RS+ER + + P V++V +S ++ L +
Sbjct: 393 RAGRSGEALLFVTPREGRLLRSIERATKSQLHEMKLPTVDEVNDSRKQKFADDLTEALAD 452
Query: 240 SVEFFTPTAQRLIEE 254
S P + LIEE
Sbjct: 453 SQ---VPVFRELIEE 464
>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 620
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 156/277 (56%), Gaps = 7/277 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DV I+E+ P Q +LFSATMP +K + ++L NP+ ID+ G +
Sbjct: 161 MLNMGFVDDVTAIMEHAPESAQRVLFSATMPPMLKNIVERFLRNPITIDVAGKN--HTVD 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
++ K +S L+ +IVF +T++D + ++ L + + ALHG
Sbjct: 219 KVEQQFWVVKGVEKDEAMSRLLETEETDA-SIVFVRTRQDTERLADWLCARGFKASALHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q RERT++ +QG +LVATDV ARGLD+P + + +Y++P D E+++HR GRTG
Sbjct: 278 DIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHP- 238
RAG++G AIL+ ++Q R +R++ER E + P + V + E++ A L
Sbjct: 338 RAGRKGKAILLVRTNQLRMLRTIERVTKSTMEEIQLPHRDKVAAARLEKLGAELETEKEH 397
Query: 239 ESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
+++E FT ++L + DA LAA L + RP
Sbjct: 398 KALEKFTELVEKLQDTLELDAATLAAILLKRQQGKRP 434
>gi|152992584|ref|YP_001358305.1| DEAD/DEAH box helicase [Sulfurovum sp. NBC37-1]
gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
NBC37-1]
Length = 492
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 137/234 (58%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ++++ I LP +RQ+++FSATMP+ ++KL+ + L+NP + + + E
Sbjct: 152 MLDMGFLDEIKNIFTFLPKERQTLMFSATMPNGIRKLAEQILNNPKTVSIT--KSESTNS 209
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I Y + L LI Y K I+F + K++ D + LT+ LHG
Sbjct: 210 KITQYYYVVQERERDDALVRLID-YKNPEKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHG 268
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QRE T+ F+QG + VATDVAARGLD+ +V + +Y +P D E++VHR GRTG
Sbjct: 269 DMEQKQREVTIRAFKQGGIDIFVATDVAARGLDVNDVTHVFNYHIPFDSESYVHRIGRTG 328
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAGK G AI + + ++ RT++ +E+DVG K P +V + ++++A +
Sbjct: 329 RAGKTGEAITLVSPNELRTIKRIEKDVGTKMTTQVIPTRIEVQNNRNDELIAKI 382
>gi|403528202|ref|YP_006663089.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
gi|403230629|gb|AFR30051.1| cold-shock DEAD box protein A [Arthrobacter sp. Rue61a]
Length = 726
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 153/280 (54%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE I + P RQ LFSATMP ++++S++YL+NP I +
Sbjct: 232 MLRMGFADDVEQIFQQTPETRQVALFSATMPGQIRRMSKQYLNNPAEISV--KSKTTTGA 289
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K + K L+ ++ V G I F +TK ++++ L + + A++G
Sbjct: 290 NTKQRYLQVMGPHKLDALTRILEVEEFDG-VIAFVRTKMATEDLADKLKARGFQAAAING 348
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT++ ++G+ +LVATDVAARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 349 DIPQQQRERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTG 408
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G AIL T ++ +RS+E+ E + P E V L AE++ TL
Sbjct: 409 RAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETL-- 466
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
E V F EE A +AAALA ++ +P
Sbjct: 467 -ESEDVAAFRDLISSYEEEHNVPASEIAAALAVMAQGGQP 505
>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
8102]
Length = 598
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 133/224 (59%), Gaps = 18/224 (8%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE ILE LP +RQ +LFSATMP +++LS++YL +P + + K E
Sbjct: 200 MLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRYLKDPAEVTI----RTKDQE 255
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK-TIVFTQTKRDADEVSLALTSIIASEA--- 116
G ++ S T + + + A GG+ I+F +TK ++ LT EA
Sbjct: 256 GKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFARTK------AITLTVAETLEAGGH 309
Query: 117 ----LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
L+GD+ Q+QRERT+ R G +LVATDVAARGLD+ + L+I+Y++P D E +V
Sbjct: 310 QVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVDRIGLVINYDMPFDSEAYV 369
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
HR GRTGRAG+ G A+L T +RR + +LER G E + P
Sbjct: 370 HRIGRTGRAGRTGEAVLFVTPRERRFINNLERATGQPIEAMEVP 413
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 4/230 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
M +GF +D++ I++ P RQ+ FSATM + + + S+ Y + P I + Q E E
Sbjct: 155 MFDMGFRDDMKTIIDQTNPNRQTCFFSATMGNDIMEFSKLYQNIPQQILI--EQKELTVE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
IK Y + + K+ IL+ L+ +Y +IVF TKR D++ LT + +ALHG
Sbjct: 213 KIKQYYLEMDSKMKKEILNRLLGMYNPN-LSIVFCNTKRMVDQLVTDLTKLGYNVDALHG 271
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+ + FR +L+ATD+AARGLD+ NVDL+++Y+LP + +VHR GRT
Sbjct: 272 DMKQSQRDNVMKRFRASTIEILIATDIAARGLDVENVDLVVNYDLPQQNDYYVHRIGRTA 331
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQV 229
RAGK+G + TS R + +ER K E + P + DV +S Q+
Sbjct: 332 RAGKKGISFTFVTSRDRNKLGEIERYTNSKMEKMELPTIYDVRNNSRNQL 381
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 159/276 (57%), Gaps = 8/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED++ IL+ +P +RQ+MLFSATMP +K+L+ ++L +P ++ ++ Q A
Sbjct: 156 MLDMGFMEDIQSILKQVPDERQTMLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVS--AP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I I K LS LI + + IVF +TKR DE++ AL +++ LHG
Sbjct: 214 LIDQAYIEVPERQKFEALSRLIDMESPE-LAIVFGRTKRRVDELAEALQKRGYSADGLHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+SQ+QR+ + FR G VLVATDVAARGLD+ V +++++LP DPE++VHR GRTG
Sbjct: 273 DLSQNQRDAVMRKFRDGSIDVLVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT--LNGVH 237
RAGKEG A T + + +ER + P + + LE ++++A L V
Sbjct: 333 RAGKEGEAWSFVTPREIDHLHFIERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEVVE 391
Query: 238 PESVEFFTPTAQRLIEE-KGTDALAAALAQLSGFSR 272
+ + A +++E+ L+AAL ++G R
Sbjct: 392 KGELNEYKGLAIQMLEQYDSVQLLSAALKLMTGEKR 427
>gi|408786057|ref|ZP_11197796.1| cold-shock dead-box protein A [Rhizobium lupini HPC(L)]
gi|408487927|gb|EKJ96242.1| cold-shock dead-box protein A [Rhizobium lupini HPC(L)]
Length = 615
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 160/282 (56%), Gaps = 19/282 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E ILE P R++++FSAT+P + KL+ Y N + I Q + +
Sbjct: 160 MLDLGFREDLEFILEESPEDRRTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHV-- 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----SIIASEA 116
I+ A+ + + + + + + Y + IVF T+ + ++ L S++A
Sbjct: 218 DIEYRALLVSPSDRENAIINALRFY-EARNAIVFCSTRAAVNHLTARLNNRGFSVVA--- 273
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSG 176
L G+++Q++R L R G+ V VATDVAARG+D+P ++L+IH +LP + ET +HRSG
Sbjct: 274 LSGELTQNERTHALQAMRDGRARVCVATDVAARGIDLPGLELVIHADLPTNSETLLHRSG 333
Query: 177 RTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVA--TLN 234
RTGRAG++G + ++ SQRR L +V PP VE+++E +++A TL+
Sbjct: 334 RTGRAGQKGVSAIVVPVSQRRKAERLLEGAKVSAAWVHPPSVEEIVERDGARLLADPTLS 393
Query: 235 -GVHPESVEFFTPTAQRLIEEKGTDALAAALAQL--SGFSRP 273
V + +F T +L+E+ G + +AAA +L +G S P
Sbjct: 394 EAVADDERDFVT----KLLEQHGAEKVAAAFVRLYHAGRSAP 431
>gi|398379083|ref|ZP_10537228.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397723550|gb|EJK84044.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 580
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 134/216 (62%), Gaps = 5/216 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+ I + +P KRQ+MLFSATMP + L+ +YL NP+ +++ + K A+
Sbjct: 203 MLDLGFIHDLRKISKMVPAKRQTMLFSATMPKTIADLAAEYLTNPVKVEV--SPPGKAAD 260
Query: 61 GIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
++ Y + + +T IL + I+ G + +VF +TK A+++ L + A+ ++H
Sbjct: 261 KVEQYVHFVSGQNHKTEILKESISANPDG-RAMVFLRTKHGAEKLMKHLEHVGFAAASIH 319
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
G+ SQ QRER L GFR G+ VLVATDVAARG+DIP V + +Y+LP P+ +VHR GRT
Sbjct: 320 GNKSQGQRERALKGFRDGEVRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRT 379
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214
RAG++G AI + R +R +ER +G + S
Sbjct: 380 ARAGRDGIAIAFCAPDEARLLRDIERLMGIEIAVAS 415
>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
Length = 571
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 131/218 (60%), Gaps = 6/218 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL P +RQ++LFSATMP + +++RK+ + I +V + E
Sbjct: 156 MLDMGFREDMETILTETPEERQTVLFSATMPKPIMEIARKFQKDARIIKVV--RKELTVS 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + +K ILS LI +Y ++VF TKR DE+ L ++ +HG
Sbjct: 214 NIDQFYYEVRPKNKTEILSRLIDIY-NPKLSVVFCNTKRQVDELISELKGRGYFADGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q QR+R ++ FR GK +L+ATDVAARG+D+ VD++ +Y+LP D E +VHR GRTG
Sbjct: 273 DMKQQQRDRVMDDFRSGKTEILIATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217
RAGK G A+ + + ++ +ER CK + ++ P+
Sbjct: 333 RAGKSGLALSFISGREVYKLKDIER--YCKTKILAKPI 368
>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337736000|ref|YP_004635447.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384457509|ref|YP_005669929.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336293433|gb|AEI34567.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 374
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 123/206 (59%), Gaps = 8/206 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF+ DVE IL+N P KRQ + FSAT+ VKKL+ +Y+ NPL I + E E
Sbjct: 155 MLLMGFKNDVEEILKNAPKKRQMLCFSATISPAVKKLAYRYMTNPLTIST--KKKEVTLE 212
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK--TIVFTQTKRDADEVSLALTSI-IASEAL 117
I+ + + TT K L DL T + I+F +TKR DE+ + L + L
Sbjct: 213 NIEQFVVETTDRKK---LEDLCTALKQDNPFMAIIFGRTKRRVDELEVELYRRGFDCQKL 269
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
H D++Q +RER + FR G F L+ATDVA+RGLDI V I +Y++P++PE+++HR GR
Sbjct: 270 HSDLTQTKRERIMKSFRNGDFQYLLATDVASRGLDISGVSHIYNYDVPDNPESYIHRIGR 329
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLE 203
TGRAG+EG L +R + +E
Sbjct: 330 TGRAGEEGYTCLFAAERDKRKLEDIE 355
>gi|339007892|ref|ZP_08640466.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338775095|gb|EGP34624.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 506
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 155/276 (56%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF E++E ILE +P +RQ++LFSATMP ++ L+++YL NP I + E
Sbjct: 156 MLNMGFIEEIESILEQIPDERQTLLFSATMPRQIESLAQRYLKNPEKITV--KAKEVTVP 213
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + K +++ L+ + + IVF +TKR DE+S AL ++E +HG
Sbjct: 214 NIEQVYMEVQEKLKFDVMTRLLDIQSPE-LAIVFGRTKRRVDELSEALNKRGYSAEGIHG 272
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q +R+ L F++G +LVATDVAARGLDI V + ++++P DPE++VHR GRTG
Sbjct: 273 DLTQAKRDSVLRQFKEGTIDILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTG 332
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT-LNGVHP 238
RAGK G A TS + +R +E K P + + +E + V L +
Sbjct: 333 RAGKTGVATTFVTSRELDHLRMIEHVTKRKMSRRPVPTLTEAIEGAQRITVEKLLTVIGE 392
Query: 239 ESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274
E+ + A+ L++E TD++ A L ++ P
Sbjct: 393 ENYRDYHGLAETLLQE--TDSVTLVAAALKMLTKEP 426
>gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 729
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 154/276 (55%), Gaps = 7/276 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+ P +R++++FSAT+PS + L+++Y + + G Q + L
Sbjct: 160 MLDLGFRDDLEFILDAAPDQRRTLMFSATVPSGIANLAKRYQTKAVRVTTAGEQKQHL-- 217
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ A+S + + +++ Y IVF T+ + ++ ++ A AL G
Sbjct: 218 DIEYRALSVAPNDRENAVINVLRFY-DAKNAIVFCSTRATVNHLTARFSNRGFAVVALSG 276
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
++SQ++R L R G+ V VATDVAARGLD+P+++L+IH +LP PET +HRSGRTG
Sbjct: 277 ELSQNERSHALQALRDGRAKVCVATDVAARGLDLPDLELVIHADLPKSPETLLHRSGRTG 336
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239
RAG++G + ++ + RR L D + PP E++L E+++A + E
Sbjct: 337 RAGRKGVSAMIVPYNARRRTERLLSDARISAAWARPPSAEEILARDDERLLADPH-FEAE 395
Query: 240 SVEFFTPTAQRLIEEKGTDALAAAL--AQLSGFSRP 273
E + L+E G + +AAAL A +G S P
Sbjct: 396 IGEDEADMVKALLERHGPEKVAAALMRAHRAGRSAP 431
>gi|374628683|ref|ZP_09701068.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373906796|gb|EHQ34900.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 529
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 150/271 (55%), Gaps = 9/271 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-A 59
ML +GF ED+E IL P +RQ++LFSATMP+ + ++S+ + NP + V + L
Sbjct: 160 MLDMGFREDLEEILGYAPKERQTVLFSATMPAPILRISKSFQHNP---EFVSITPKTLTV 216
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI-IASEAL 117
I+ + I + K +L I + KG G++IVF TK+ DE+S + S +E L
Sbjct: 217 PSIEQFYIEVRESEKADLLCRFIDI--KGPGQSIVFCNTKKRVDELSSIMRSRGYFAEGL 274
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD+ Q QR+R + FR G +L+ATDVAARG+D+ +++ + +Y++P D E +VHR GR
Sbjct: 275 HGDLKQQQRDRVMGKFRNGTIDILIATDVAARGIDVEDIETVYNYDVPQDTEYYVHRIGR 334
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV- 236
TGRAGK G + + ++ L+R + + P ++DV S E+ + + V
Sbjct: 335 TGRAGKSGASYTFVGPREYGKLKMLKRISQSGLKRIQKPGLKDVENSRVERYIENVKDVM 394
Query: 237 HPESVEFFTPTAQRLIEEKGTDALAAALAQL 267
E + +R +EE DA A A L
Sbjct: 395 SEEDSGCYLTVIERFLEENDCDASDVAAAML 425
>gi|338708626|ref|YP_004662827.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
gi|336295430|gb|AEI38537.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 448
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 134/219 (61%), Gaps = 7/219 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF + I + LP +RQ++ FSATMP +++LS ++L +P+ + + AE
Sbjct: 165 MLDLGFIHALRRIDKLLPKQRQTLFFSATMPKSIQELSSQFLSDPVTVSVAPQSST--AE 222
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEAL 117
++ + + K+ +L+ IT+ + G + +VFT+TK AD V L + I + A+
Sbjct: 223 RVEQFGVFVNQQEKQALLT--ITLKSTPGLDRALVFTRTKHGADRVVRHLEAAGIPAAAI 280
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ QRER LN FR G+ +LVATD+AARG+D+P V + ++ELPN E +VHR GR
Sbjct: 281 HGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVPGVSHVFNFELPNVAEQYVHRIGR 340
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
T RAG++G AI + +R +RS+ER K + + P
Sbjct: 341 TARAGRDGQAISFVANDERTYLRSIERLTRVKLQILPLP 379
>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 726
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 153/280 (54%), Gaps = 13/280 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +DVE I + P RQ LFSATMP ++++S++YL+NP I +
Sbjct: 232 MLRMGFADDVEQIFQQTPETRQVALFSATMPGQIRRMSKQYLNNPAEISV--KSKTTTGA 289
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
K + K L+ ++ V G I F +TK ++++ L + + A++G
Sbjct: 290 NTKQRYLQVMGPHKLDALTRILEVEEFDG-VIAFVRTKMATEDLADKLKARGFQAAAING 348
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
DI Q QRERT++ ++G+ +LVATDVAARGLD+ + +I+Y++P+D E++VHR GRTG
Sbjct: 349 DIPQQQRERTVDALKEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTG 408
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV----LESSAEQVVATLNG 235
RAG+ G AIL T ++ +RS+E+ E + P E V L AE++ TL
Sbjct: 409 RAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETL-- 466
Query: 236 VHPESVEFFTPTAQRLIEEKGTDA--LAAALAQLSGFSRP 273
E V F EE A +AAALA ++ +P
Sbjct: 467 -ESEDVAAFRDLISSYEEEHNVPASEIAAALAVMAQGGQP 505
>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
43247]
Length = 597
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE IL P +Q LFSATMPS +++L+++YL++P I + A+
Sbjct: 177 MLTMGFAEDVERILAETPDDKQVALFSATMPSAIRRLAQRYLNDPQEITV--KSKTATAQ 234
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I + + K L+ + V IVF +TK+ +E++ L S ++ A++G
Sbjct: 235 NITQRYLQVSHQRKLDALTRFLEVETFDA-MIVFVRTKQATEELAEKLRSRGFSAVAING 293
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D++Q QRERT+N + G +LVATDVAARGLD+ + +++Y++P+D E++VHR GRTG
Sbjct: 294 DMAQAQRERTINQLKSGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG 353
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDV 221
RAG+ G A+L + +R +RS+ER + P VEDV
Sbjct: 354 RAGRAGNALLFVSPRERHLLRSIERATRSTLTEIGLPSVEDV 395
>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
gi|337738217|ref|YP_004637664.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459728|ref|YP_005672148.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
ortholog [Clostridium acetobutylicum ATCC 824]
gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
acetobutylicum EA 2018]
gi|336293434|gb|AEI34568.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 528
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/336 (30%), Positives = 176/336 (52%), Gaps = 17/336 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLA 59
ML +GF +D+E I++N+ RQ+MLFSATMP+ +KKL+ Y+ + +I ++ N
Sbjct: 160 MLDMGFIDDIEGIIKNISGDRQTMLFSATMPAPIKKLASNYMKKEVKHIAIIKNS--LTV 217
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALH 118
E I+ + K L +I V + TI+F +TKR DE+ ++ E +H
Sbjct: 218 ERIQQFYFEVKNKDKFEALCRIIDV-EEPETTIIFCRTKRGVDELVESMQFRGYNVEGMH 276
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+SQ+QR TL F++ LVATDVAARG+D+ NV +I+Y++P D E++VHR GRT
Sbjct: 277 GDMSQNQRINTLKKFKENNIDFLVATDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRT 336
Query: 179 GRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL-NGVH 237
GRA EG A + T + ++ +E+ K P ++D+ E+ + + +
Sbjct: 337 GRANAEGIAYSLVTPREYVMIKQIEKFTKSKIRRKEIPTIDDIFETKYNTLTDKITKNIE 396
Query: 238 PESVEFFTPTAQRLIEEKGTDALAAALAQL-----SGFSRPPSSRSLINHEQGWVTLQLT 292
+ + + P Q+L +E ++AAL ++ GF + L + E +
Sbjct: 397 KDDFKKYIPFVQKLDDEFNLVDVSAALVKMIFDKEMGFDYSDDDK-LKSDESVRLFF--- 452
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
SA + ++ + ++ F+ + +EIG I I+
Sbjct: 453 --SAGRKDKLTVKKLLEFIDNASGVEGNEIGDIDIL 486
>gi|423618846|ref|ZP_17594679.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD115]
gi|401252322|gb|EJR58583.1| ATP-dependent RNA helicase dbpA [Bacillus cereus VD115]
Length = 481
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 8/229 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL--VGNQDEKL 58
ML +GF + VE I++ LP KR +MLFSAT+P V+KLSR Y+D+P +I++ G +K+
Sbjct: 158 MLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVEKLSRTYMDSPTHIEIKAAGITTDKI 217
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ T K ++L D+ T+ I+F +T+ + D V L + + +
Sbjct: 218 EHTL----FETREEEKLSLLKDVTTI-ENPDSCIIFCRTQENVDHVFRQLNRVNYPCDKI 272
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG + Q R ++ FR+GKF LVATDVAARG+DI N+ +I+Y++P + E++VHR+GR
Sbjct: 273 HGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGR 332
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226
TGRAG +G AI T + R + +E +G + P E+V++ A
Sbjct: 333 TGRAGNKGKAITFITPYENRFLEEIEEYIGFEIPKAYAPSKEEVMKGKA 381
>gi|427408196|ref|ZP_18898398.1| hypothetical protein HMPREF9718_00872 [Sphingobium yanoikuyae ATCC
51230]
gi|425713535|gb|EKU76548.1| hypothetical protein HMPREF9718_00872 [Sphingobium yanoikuyae ATCC
51230]
Length = 578
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 139/234 (59%), Gaps = 4/234 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF ED+E IL++ P R+++LFSATMP + ++++Y + L I VG +E+
Sbjct: 159 MLDMGFREDLEGILDSAPEDRRTLLFSATMPKPIVAMAKRYQSDALRISTVG--EERGHG 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I A++ + + +L+ Y + I+F T+ + + +LT A+ AL G
Sbjct: 217 DISYQAVTVAPSDIENAVVNLLR-YHEAETAILFCATRDNVRHLHSSLTERGFAAVALSG 275
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ SQ++R L R + V VATDVAARG+D+P++ L++H ELP D ET HRSGRTG
Sbjct: 276 EHSQNERNHALQALRDKRARVCVATDVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTG 335
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RAGK+GTA+L+ +RR V S+ R E+ +PP E +LE ++ +TL
Sbjct: 336 RAGKKGTAVLIVPYPRRRRVESMLRGAKIPVEWGTPPSKEAILEQDNARLRSTL 389
>gi|407768377|ref|ZP_11115756.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407289090|gb|EKF14567.1| DEAD/DEAH box helicase [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 602
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 4/212 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDV + E LP Q+++FSATMP VK L+ + L+NP+ ++ + E
Sbjct: 161 MLDMGFSEDVLTVAEVLPRDHQTVMFSATMPPAVKHLTDRLLNNPVKVETA--PQSSVTE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHG 119
+ + K ++L L+ + + +VFT+TK DADE+S L + ++A+HG
Sbjct: 219 RVTQRGMFVKRHDKTSLLVQLLK-RQESERVLVFTKTKADADELSFQLRDEGVDTDAIHG 277
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D Q R++ L FR G+F VL+ATDVAARG+D+P + +I+Y+LP DPE +VHR GRTG
Sbjct: 278 DKQQRIRQKILRNFRNGQFPVLIATDVAARGIDVPGITHVINYDLPTDPENYVHRIGRTG 337
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
R EG AI R +R++ER +G + E
Sbjct: 338 RGSAEGIAISFCEPRDVRHLRNIERVIGQQVE 369
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,475,439,119
Number of Sequences: 23463169
Number of extensions: 213854818
Number of successful extensions: 669987
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 39821
Number of HSP's successfully gapped in prelim test: 12240
Number of HSP's that attempted gapping in prelim test: 592378
Number of HSP's gapped (non-prelim): 56912
length of query: 379
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 235
effective length of database: 8,980,499,031
effective search space: 2110417272285
effective search space used: 2110417272285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)