Query 017020
Match_columns 379
No_of_seqs 415 out of 2894
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 8.6E-54 1.9E-58 446.6 35.1 352 1-362 161-555 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 1.7E-46 3.6E-51 374.2 19.6 206 1-206 251-460 (519)
3 COG0513 SrmB Superfamily II DN 100.0 4.3E-45 9.3E-50 374.2 25.2 220 1-221 186-409 (513)
4 PRK11776 ATP-dependent RNA hel 100.0 6.8E-44 1.5E-48 362.3 27.3 297 1-364 159-456 (460)
5 KOG0328 Predicted ATP-dependen 100.0 1.6E-44 3.4E-49 329.2 17.8 213 1-216 181-395 (400)
6 KOG0330 ATP-dependent RNA heli 100.0 6.9E-44 1.5E-48 337.2 20.0 213 1-216 216-429 (476)
7 KOG0342 ATP-dependent RNA heli 100.0 4.9E-43 1.1E-47 339.9 21.4 271 1-275 242-522 (543)
8 KOG0333 U5 snRNP-like RNA heli 100.0 4.4E-43 9.6E-48 341.8 18.8 203 1-206 408-636 (673)
9 KOG0345 ATP-dependent RNA heli 100.0 3.3E-41 7.2E-46 325.3 18.4 219 1-220 169-390 (567)
10 KOG0343 RNA Helicase [RNA proc 100.0 1.6E-40 3.6E-45 325.3 20.0 271 1-274 227-509 (758)
11 KOG0336 ATP-dependent RNA heli 100.0 7.6E-40 1.6E-44 311.1 17.4 203 1-204 379-582 (629)
12 KOG0338 ATP-dependent RNA heli 100.0 5.7E-39 1.2E-43 312.1 13.9 213 1-216 339-558 (691)
13 KOG0326 ATP-dependent RNA heli 100.0 1.2E-38 2.5E-43 295.1 14.9 210 1-214 239-449 (459)
14 KOG0340 ATP-dependent RNA heli 100.0 5.4E-38 1.2E-42 294.2 16.8 215 1-215 165-382 (442)
15 KOG0341 DEAD-box protein abstr 100.0 1.8E-38 4E-43 300.0 10.6 191 1-195 338-529 (610)
16 PRK04837 ATP-dependent RNA hel 100.0 1.9E-36 4.1E-41 304.6 20.3 211 1-214 169-382 (423)
17 KOG0327 Translation initiation 100.0 1.1E-36 2.3E-41 288.7 17.4 210 1-215 181-391 (397)
18 PRK10590 ATP-dependent RNA hel 100.0 4.5E-36 9.7E-41 304.6 22.2 214 1-217 161-375 (456)
19 KOG0332 ATP-dependent RNA heli 100.0 2.8E-36 6.1E-41 284.2 18.6 215 4-221 248-471 (477)
20 PTZ00110 helicase; Provisional 100.0 7.1E-36 1.5E-40 308.6 22.8 206 1-207 289-497 (545)
21 KOG0335 ATP-dependent RNA heli 100.0 3.2E-36 7E-41 296.2 17.2 202 1-204 238-454 (482)
22 PRK04537 ATP-dependent RNA hel 100.0 2E-35 4.3E-40 306.5 22.2 210 1-213 171-383 (572)
23 PRK11192 ATP-dependent RNA hel 100.0 1.5E-34 3.4E-39 291.7 22.5 209 1-212 159-370 (434)
24 PLN00206 DEAD-box ATP-dependen 100.0 2E-34 4.4E-39 296.5 23.0 204 1-207 282-488 (518)
25 PRK01297 ATP-dependent RNA hel 100.0 2.7E-33 5.8E-38 285.8 23.4 209 1-212 249-460 (475)
26 KOG0346 RNA helicase [RNA proc 100.0 2.3E-33 4.9E-38 269.2 16.7 206 1-207 182-423 (569)
27 KOG0339 ATP-dependent RNA heli 100.0 4.5E-33 9.8E-38 270.8 18.5 202 1-204 382-585 (731)
28 PTZ00424 helicase 45; Provisio 100.0 2.3E-32 4.9E-37 272.8 21.5 213 1-216 182-396 (401)
29 KOG0348 ATP-dependent RNA heli 100.0 2.5E-33 5.3E-38 274.3 13.4 207 1-207 299-567 (708)
30 KOG0347 RNA helicase [RNA proc 100.0 1.7E-33 3.6E-38 276.2 7.3 225 1-229 352-605 (731)
31 KOG0334 RNA helicase [RNA proc 100.0 8.6E-32 1.9E-36 281.5 16.6 204 1-206 527-732 (997)
32 TIGR03817 DECH_helic helicase/ 100.0 3.2E-30 6.9E-35 274.3 23.5 232 5-244 172-438 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 3E-31 6.5E-36 253.5 11.8 212 1-214 176-388 (529)
34 PLN03137 ATP-dependent DNA hel 100.0 5.1E-29 1.1E-33 266.5 21.5 199 1-204 593-797 (1195)
35 KOG4284 DEAD box protein [Tran 100.0 1.5E-29 3.2E-34 252.0 16.1 190 4-196 183-381 (980)
36 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-28 2.5E-33 251.3 22.2 196 2-204 140-343 (470)
37 KOG0344 ATP-dependent RNA heli 100.0 3.8E-29 8.2E-34 248.2 15.2 199 5-206 305-507 (593)
38 PHA02653 RNA helicase NPH-II; 100.0 1.8E-27 4E-32 248.7 22.1 235 2-271 304-566 (675)
39 PRK11057 ATP-dependent DNA hel 100.0 1.7E-27 3.8E-32 249.3 21.7 189 6-203 158-352 (607)
40 TIGR01970 DEAH_box_HrpB ATP-de 99.9 8.3E-27 1.8E-31 248.9 19.8 243 1-273 126-396 (819)
41 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.4E-26 3.1E-31 244.1 18.7 183 2-192 182-389 (844)
42 PRK11664 ATP-dependent RNA hel 99.9 1.7E-26 3.6E-31 246.9 17.7 233 11-273 140-399 (812)
43 TIGR01389 recQ ATP-dependent D 99.9 8.1E-26 1.8E-30 236.5 21.1 189 6-203 146-340 (591)
44 KOG0350 DEAD-box ATP-dependent 99.9 2.1E-26 4.5E-31 224.4 13.8 199 9-208 349-554 (620)
45 TIGR00580 mfd transcription-re 99.9 2.9E-24 6.3E-29 231.7 21.4 191 8-205 587-787 (926)
46 PRK11131 ATP-dependent RNA hel 99.9 1.6E-24 3.5E-29 236.6 19.4 240 1-271 199-469 (1294)
47 PRK09751 putative ATP-dependen 99.9 1E-23 2.2E-28 233.8 22.6 220 6-231 145-425 (1490)
48 PRK10689 transcription-repair 99.9 4.5E-24 9.8E-29 234.7 19.4 194 4-206 734-937 (1147)
49 TIGR01587 cas3_core CRISPR-ass 99.9 4E-24 8.6E-29 210.5 16.3 180 10-195 144-337 (358)
50 COG0514 RecQ Superfamily II DN 99.9 6.5E-24 1.4E-28 216.0 18.1 192 6-205 150-348 (590)
51 PRK13767 ATP-dependent helicas 99.9 4.6E-23 9.9E-28 223.6 22.4 219 10-230 197-437 (876)
52 PRK12898 secA preprotein trans 99.9 1.8E-23 3.8E-28 216.3 15.0 168 22-195 410-587 (656)
53 TIGR01967 DEAH_box_HrpA ATP-de 99.9 5E-23 1.1E-27 225.5 19.2 242 1-273 192-464 (1283)
54 PRK02362 ski2-like helicase; P 99.9 1.2E-22 2.7E-27 217.4 20.9 206 1-210 149-412 (737)
55 KOG0329 ATP-dependent RNA heli 99.9 4.9E-24 1.1E-28 192.8 5.4 169 5-209 202-371 (387)
56 PRK10917 ATP-dependent DNA hel 99.9 6.6E-22 1.4E-26 209.6 21.5 189 10-204 399-603 (681)
57 PRK00254 ski2-like helicase; P 99.9 5E-22 1.1E-26 212.2 19.8 206 1-212 150-404 (720)
58 TIGR00643 recG ATP-dependent D 99.9 2.7E-21 5.8E-26 203.5 20.7 167 20-192 386-564 (630)
59 KOG0349 Putative DEAD-box RNA 99.9 6.5E-22 1.4E-26 190.2 14.1 190 1-193 375-614 (725)
60 PRK04914 ATP-dependent helicas 99.9 2.2E-21 4.8E-26 209.0 19.4 163 73-236 479-647 (956)
61 PRK09200 preprotein translocas 99.9 1.5E-20 3.3E-25 198.4 19.4 169 22-196 365-543 (790)
62 PRK09401 reverse gyrase; Revie 99.9 4.6E-21 1E-25 211.5 15.1 163 4-180 227-430 (1176)
63 PRK01172 ski2-like helicase; P 99.9 1.1E-20 2.4E-25 200.8 17.2 188 2-195 148-379 (674)
64 PRK14701 reverse gyrase; Provi 99.8 2.9E-20 6.3E-25 209.4 15.4 187 4-202 226-464 (1638)
65 TIGR01054 rgy reverse gyrase. 99.8 1.1E-19 2.4E-24 200.8 18.0 150 4-166 225-409 (1171)
66 KOG0351 ATP-dependent DNA heli 99.8 1.4E-19 3.1E-24 193.8 18.3 194 6-205 404-603 (941)
67 PRK05298 excinuclease ABC subu 99.8 1.8E-19 3.9E-24 189.9 18.4 140 74-214 431-586 (652)
68 TIGR03714 secA2 accessory Sec 99.8 3E-19 6.6E-24 187.1 19.4 168 22-196 361-539 (762)
69 TIGR03158 cas3_cyano CRISPR-as 99.8 2.8E-19 6.1E-24 176.1 16.8 157 12-179 173-357 (357)
70 TIGR00963 secA preprotein tran 99.8 2.1E-19 4.5E-24 187.4 15.1 169 22-196 342-519 (745)
71 TIGR00631 uvrb excinuclease AB 99.8 5.9E-19 1.3E-23 185.2 18.1 132 73-205 426-564 (655)
72 PHA02558 uvsW UvsW helicase; P 99.8 9E-19 1.9E-23 179.9 18.8 113 74-186 329-444 (501)
73 cd00079 HELICc Helicase superf 99.8 5.1E-19 1.1E-23 147.9 12.4 127 63-190 3-131 (131)
74 PRK12906 secA preprotein trans 99.8 2E-18 4.4E-23 181.4 17.1 168 22-195 377-554 (796)
75 COG1201 Lhr Lhr-like helicases 99.8 3.9E-17 8.5E-22 172.1 24.8 201 10-217 174-387 (814)
76 COG1111 MPH1 ERCC4-like helica 99.8 1.8E-18 4E-23 170.2 12.9 123 72-195 347-482 (542)
77 PRK12900 secA preprotein trans 99.8 1.2E-17 2.6E-22 177.0 15.8 168 23-196 536-713 (1025)
78 COG1643 HrpA HrpA-like helicas 99.7 2.3E-17 5.1E-22 174.9 17.2 236 11-274 186-449 (845)
79 PF00271 Helicase_C: Helicase 99.7 3.4E-18 7.3E-23 131.2 7.3 76 107-182 2-78 (78)
80 KOG0352 ATP-dependent DNA heli 99.7 4.2E-18 9.2E-23 163.9 9.6 180 19-204 175-372 (641)
81 COG1202 Superfamily II helicas 99.7 1.9E-17 4.1E-22 164.5 13.2 175 14-195 366-554 (830)
82 PRK13766 Hef nuclease; Provisi 99.7 5.4E-17 1.2E-21 175.2 14.3 122 72-194 346-479 (773)
83 KOG0922 DEAH-box RNA helicase 99.7 3.3E-16 7.2E-21 158.6 16.4 231 13-272 189-449 (674)
84 COG1204 Superfamily II helicas 99.7 3E-16 6.6E-21 166.7 15.7 182 10-193 167-407 (766)
85 TIGR00603 rad25 DNA repair hel 99.7 1.2E-16 2.7E-21 167.5 12.0 120 73-196 480-609 (732)
86 KOG0923 mRNA splicing factor A 99.7 4.5E-16 9.9E-21 156.7 13.4 231 19-276 409-670 (902)
87 PRK09694 helicase Cas3; Provis 99.7 1.3E-15 2.8E-20 163.6 17.7 106 75-183 547-664 (878)
88 KOG0354 DEAD-box like helicase 99.7 6.6E-16 1.4E-20 159.8 13.7 125 72-198 394-533 (746)
89 KOG0353 ATP-dependent DNA heli 99.6 3.2E-15 7E-20 142.3 13.7 191 6-200 234-473 (695)
90 COG1200 RecG RecG-like helicas 99.6 1.8E-14 3.8E-19 147.4 18.5 170 20-195 411-592 (677)
91 TIGR00595 priA primosomal prot 99.6 1.5E-14 3.3E-19 148.3 16.8 95 101-195 271-382 (505)
92 smart00490 HELICc helicase sup 99.6 1.9E-15 4.1E-20 115.7 7.7 80 103-182 2-82 (82)
93 PRK05580 primosome assembly pr 99.6 4E-14 8.7E-19 150.1 18.6 103 100-202 438-557 (679)
94 KOG0924 mRNA splicing factor A 99.6 3.8E-14 8.2E-19 143.3 13.2 228 19-273 499-758 (1042)
95 PRK13104 secA preprotein trans 99.5 3.8E-13 8.2E-18 142.8 17.4 168 22-195 381-588 (896)
96 COG1205 Distinct helicase fami 99.5 3.9E-13 8.4E-18 144.9 17.3 189 15-207 227-437 (851)
97 PRK12904 preprotein translocas 99.5 2.2E-13 4.9E-18 144.2 14.2 168 22-195 367-574 (830)
98 KOG0950 DNA polymerase theta/e 99.5 3.4E-13 7.3E-18 141.3 14.2 116 87-202 459-619 (1008)
99 PRK13107 preprotein translocas 99.5 1.1E-12 2.4E-17 139.0 18.0 169 22-196 386-593 (908)
100 COG4098 comFA Superfamily II D 99.5 1.8E-12 3.9E-17 122.6 16.7 179 18-201 231-423 (441)
101 KOG0920 ATP-dependent RNA heli 99.5 2E-12 4.3E-17 137.6 18.5 233 17-269 316-603 (924)
102 COG0556 UvrB Helicase subunit 99.5 2.5E-12 5.5E-17 127.7 17.1 170 20-198 386-561 (663)
103 KOG0947 Cytoplasmic exosomal R 99.4 1.4E-12 2.9E-17 136.3 15.4 106 89-194 568-723 (1248)
104 COG1197 Mfd Transcription-repa 99.4 1.6E-12 3.5E-17 139.8 15.2 186 12-204 734-929 (1139)
105 COG1203 CRISPR-associated heli 99.4 1.3E-12 2.8E-17 139.9 13.8 174 19-196 369-552 (733)
106 KOG0951 RNA helicase BRR2, DEA 99.4 5.5E-12 1.2E-16 134.7 16.7 179 19-202 473-710 (1674)
107 KOG0952 DNA/RNA helicase MER3/ 99.4 2.3E-11 5E-16 128.5 18.8 180 19-202 274-499 (1230)
108 KOG0925 mRNA splicing factor A 99.3 6.4E-11 1.4E-15 116.4 18.3 221 14-267 186-442 (699)
109 KOG0948 Nuclear exosomal RNA h 99.3 6.1E-12 1.3E-16 128.7 10.3 174 16-194 262-539 (1041)
110 PF03880 DbpA: DbpA RNA bindin 99.3 5.2E-13 1.1E-17 101.6 1.7 72 287-365 1-72 (74)
111 KOG0926 DEAH-box RNA helicase 99.3 2E-11 4.4E-16 125.7 12.8 135 114-267 607-759 (1172)
112 PLN03142 Probable chromatin-re 99.3 1.9E-11 4.1E-16 133.2 12.0 134 72-205 470-612 (1033)
113 COG1061 SSL2 DNA or RNA helica 99.3 2.7E-11 5.9E-16 122.7 12.1 103 77-180 272-375 (442)
114 KOG4150 Predicted ATP-dependen 99.2 1.4E-09 3.1E-14 108.8 18.9 211 19-233 450-682 (1034)
115 PRK11448 hsdR type I restricti 99.1 2.7E-10 5.9E-15 126.1 11.4 93 88-182 698-801 (1123)
116 COG4581 Superfamily II RNA hel 99.1 2.2E-09 4.8E-14 115.8 15.1 106 88-193 379-536 (1041)
117 PRK12903 secA preprotein trans 99.0 1E-08 2.2E-13 108.5 16.9 167 22-195 363-540 (925)
118 KOG0953 Mitochondrial RNA heli 98.9 3.3E-09 7.1E-14 106.1 8.7 119 88-212 357-491 (700)
119 PRK12326 preprotein translocas 98.9 2.3E-08 4.9E-13 104.5 14.1 168 22-195 364-548 (764)
120 COG1110 Reverse gyrase [DNA re 98.9 1.2E-07 2.7E-12 100.9 19.4 131 19-165 275-416 (1187)
121 COG1198 PriA Primosomal protei 98.9 1.2E-07 2.6E-12 100.2 18.1 194 7-203 337-612 (730)
122 PRK12899 secA preprotein trans 98.8 9.9E-08 2.2E-12 102.1 15.9 168 22-195 505-682 (970)
123 PRK12901 secA preprotein trans 98.8 1.8E-07 3.9E-12 100.7 16.1 167 23-195 566-742 (1112)
124 PRK13103 secA preprotein trans 98.7 2.4E-07 5.2E-12 99.1 14.9 168 22-195 386-592 (913)
125 TIGR01407 dinG_rel DnaQ family 98.7 1.3E-07 2.9E-12 103.3 12.7 106 87-193 673-813 (850)
126 PF06862 DUF1253: Protein of u 98.6 3.3E-06 7.2E-11 84.6 18.8 181 21-202 216-423 (442)
127 PF08152 GUCT: GUCT (NUC152) d 98.6 6.9E-08 1.5E-12 77.2 4.9 81 269-356 1-82 (97)
128 CHL00122 secA preprotein trans 98.5 3.8E-06 8.3E-11 89.7 16.9 126 22-153 361-490 (870)
129 PRK12902 secA preprotein trans 98.3 1.4E-05 3E-10 85.5 15.3 126 22-153 376-505 (939)
130 KOG0390 DNA repair protein, SN 98.3 7.4E-06 1.6E-10 86.7 12.1 117 72-190 577-701 (776)
131 KOG0384 Chromodomain-helicase 98.3 3.8E-06 8.3E-11 91.0 10.0 128 74-201 684-820 (1373)
132 KOG0385 Chromatin remodeling c 98.3 7.7E-06 1.7E-10 85.1 11.7 124 71-194 469-599 (971)
133 KOG0949 Predicted helicase, DE 98.2 2.6E-06 5.6E-11 90.4 6.9 83 113-195 964-1049(1330)
134 PRK08074 bifunctional ATP-depe 98.1 1.9E-05 4.1E-10 87.2 12.8 80 87-166 751-835 (928)
135 KOG0387 Transcription-coupled 98.1 9.6E-06 2.1E-10 84.7 9.6 122 72-193 529-657 (923)
136 KOG0392 SNF2 family DNA-depend 98.1 2.2E-05 4.8E-10 85.2 10.9 123 72-194 1309-1454(1549)
137 COG1199 DinG Rad3-related DNA 98.0 0.00021 4.6E-09 76.2 16.2 77 87-166 478-559 (654)
138 KOG1123 RNA polymerase II tran 97.9 7E-05 1.5E-09 74.9 10.2 108 71-182 525-635 (776)
139 COG0553 HepA Superfamily II DN 97.9 8.2E-05 1.8E-09 81.3 11.2 122 73-194 692-822 (866)
140 TIGR00348 hsdR type I site-spe 97.8 0.00017 3.6E-09 77.1 12.9 93 88-181 514-634 (667)
141 PRK07246 bifunctional ATP-depe 97.8 6.6E-05 1.4E-09 81.8 9.8 77 86-165 645-724 (820)
142 PRK11747 dinG ATP-dependent DN 97.8 0.00061 1.3E-08 73.2 16.5 77 87-166 533-616 (697)
143 COG4096 HsdR Type I site-speci 97.8 4.6E-05 9.9E-10 80.4 7.5 92 88-181 426-525 (875)
144 PF13307 Helicase_C_2: Helicas 97.7 8E-05 1.7E-09 65.6 6.9 105 87-193 8-149 (167)
145 COG0653 SecA Preprotein transl 97.7 0.00012 2.5E-09 78.2 8.7 206 25-237 369-592 (822)
146 KOG0391 SNF2 family DNA-depend 97.6 0.00041 9E-09 75.3 11.1 123 72-194 1259-1387(1958)
147 KOG1000 Chromatin remodeling p 97.6 0.00011 2.3E-09 73.5 5.9 115 73-187 472-594 (689)
148 KOG0389 SNF2 family DNA-depend 97.6 0.00038 8.2E-09 73.0 9.8 124 72-195 760-889 (941)
149 TIGR03117 cas_csf4 CRISPR-asso 97.4 0.0023 5.1E-08 67.5 13.6 78 87-166 469-561 (636)
150 TIGR00604 rad3 DNA repair heli 97.4 0.0056 1.2E-07 66.0 16.3 78 88-166 522-615 (705)
151 TIGR00596 rad1 DNA repair prot 97.3 0.0007 1.5E-08 73.3 8.2 39 72-110 269-317 (814)
152 KOG0388 SNF2 family DNA-depend 97.2 0.0012 2.6E-08 68.7 8.4 122 72-193 1027-1153(1185)
153 KOG1002 Nucleotide excision re 97.2 0.0021 4.6E-08 64.4 9.5 123 72-194 619-749 (791)
154 COG4889 Predicted helicase [Ge 96.9 0.00045 9.8E-09 73.3 2.3 102 89-190 461-584 (1518)
155 KOG0386 Chromatin remodeling c 96.7 0.0062 1.4E-07 65.7 8.7 119 72-190 709-832 (1157)
156 PRK14873 primosome assembly pr 96.5 0.11 2.4E-06 55.5 16.8 69 127-202 462-546 (665)
157 KOG1015 Transcription regulato 96.5 0.012 2.6E-07 63.3 9.0 119 72-190 1125-1271(1567)
158 TIGR02562 cas3_yersinia CRISPR 96.3 0.015 3.3E-07 63.9 9.0 105 92-199 760-899 (1110)
159 KOG0951 RNA helicase BRR2, DEA 96.0 0.15 3.3E-06 56.7 14.7 118 80-202 1351-1502(1674)
160 PF13871 Helicase_C_4: Helicas 95.8 0.035 7.7E-07 52.7 8.0 78 128-205 52-141 (278)
161 PRK05580 primosome assembly pr 95.8 0.055 1.2E-06 58.1 10.3 91 72-163 173-266 (679)
162 PRK10917 ATP-dependent DNA hel 95.7 0.031 6.7E-07 60.0 8.1 90 72-161 293-389 (681)
163 TIGR00595 priA primosomal prot 95.6 0.052 1.1E-06 56.2 9.1 89 72-161 8-99 (505)
164 KOG0921 Dosage compensation co 95.4 0.039 8.4E-07 59.3 7.2 115 88-206 643-783 (1282)
165 KOG2340 Uncharacterized conser 95.2 0.056 1.2E-06 55.0 7.1 181 21-201 470-675 (698)
166 PF02399 Herpes_ori_bp: Origin 94.8 0.92 2E-05 49.0 15.2 113 74-193 268-387 (824)
167 TIGR00643 recG ATP-dependent D 94.8 0.089 1.9E-06 56.1 7.8 89 72-160 267-362 (630)
168 PRK14873 primosome assembly pr 94.8 0.11 2.3E-06 55.6 8.3 92 71-163 170-265 (665)
169 smart00492 HELICc3 helicase su 94.7 0.16 3.5E-06 43.4 8.0 46 121-166 31-79 (141)
170 KOG4439 RNA polymerase II tran 94.2 0.25 5.4E-06 52.1 9.1 118 72-189 728-851 (901)
171 smart00491 HELICc2 helicase su 94.2 0.18 4E-06 43.1 7.0 42 125-166 32-80 (142)
172 COG1198 PriA Primosomal protei 94.1 0.14 3.1E-06 54.9 7.5 91 69-160 225-318 (730)
173 KOG0701 dsRNA-specific nucleas 94.0 0.025 5.4E-07 64.7 1.6 94 89-182 293-399 (1606)
174 TIGR00580 mfd transcription-re 94.0 0.15 3.2E-06 56.5 7.6 90 72-161 483-579 (926)
175 COG1110 Reverse gyrase [DNA re 91.9 0.23 4.9E-06 54.4 5.1 61 87-147 124-191 (1187)
176 PRK10689 transcription-repair 91.9 0.44 9.6E-06 54.1 7.7 89 72-160 632-727 (1147)
177 COG0513 SrmB Superfamily II DN 91.5 0.65 1.4E-05 48.3 7.9 66 91-160 102-179 (513)
178 PRK14701 reverse gyrase; Provi 89.2 1.5 3.1E-05 51.7 8.9 60 87-146 121-187 (1638)
179 KOG0347 RNA helicase [RNA proc 88.8 0.57 1.2E-05 48.2 4.6 52 90-145 265-321 (731)
180 PF10593 Z1: Z1 domain; Inter 88.2 3.9 8.5E-05 38.1 9.5 104 95-203 90-202 (239)
181 TIGR01054 rgy reverse gyrase. 87.8 2.1 4.5E-05 48.9 8.8 60 87-146 120-187 (1171)
182 KOG0331 ATP-dependent RNA heli 86.2 3.6 7.7E-05 42.6 8.6 89 88-180 165-272 (519)
183 KOG0339 ATP-dependent RNA heli 85.5 6.2 0.00013 40.6 9.7 67 90-160 298-375 (731)
184 PRK11776 ATP-dependent RNA hel 85.2 3.1 6.8E-05 42.4 7.9 69 89-161 73-153 (460)
185 COG1200 RecG RecG-like helicas 85.1 3.5 7.6E-05 43.7 8.1 85 77-161 300-390 (677)
186 TIGR00614 recQ_fam ATP-depende 84.8 2.5 5.4E-05 43.3 7.0 60 87-146 50-110 (470)
187 cd00268 DEADc DEAD-box helicas 84.3 5.3 0.00011 35.4 8.1 69 88-160 69-148 (203)
188 PRK11634 ATP-dependent RNA hel 82.8 3.9 8.4E-05 43.7 7.5 69 88-160 74-154 (629)
189 smart00487 DEXDc DEAD-like hel 81.5 3 6.5E-05 35.8 5.3 46 5-50 145-190 (201)
190 TIGR01389 recQ ATP-dependent D 80.9 6 0.00013 41.8 8.2 60 87-146 52-112 (591)
191 KOG1016 Predicted DNA helicase 80.6 5.6 0.00012 42.9 7.4 103 88-190 719-843 (1387)
192 PRK11192 ATP-dependent RNA hel 80.2 4.9 0.00011 40.6 6.9 69 89-161 74-153 (434)
193 KOG0330 ATP-dependent RNA heli 80.1 12 0.00026 37.3 9.1 131 75-217 117-267 (476)
194 PRK04537 ATP-dependent RNA hel 80.1 4 8.6E-05 43.1 6.4 68 89-160 85-164 (572)
195 KOG1513 Nuclear helicase MOP-3 79.5 3 6.4E-05 45.0 5.0 62 130-191 850-920 (1300)
196 KOG1001 Helicase-like transcri 78.5 0.71 1.5E-05 49.4 0.2 118 72-189 521-643 (674)
197 PF00270 DEAD: DEAD/DEAH box h 77.9 29 0.00063 29.3 10.3 85 72-160 25-124 (169)
198 PRK10590 ATP-dependent RNA hel 77.5 6.6 0.00014 40.1 7.0 68 90-161 77-155 (456)
199 PRK04837 ATP-dependent RNA hel 75.3 8 0.00017 38.9 6.8 69 89-161 84-163 (423)
200 PLN03137 ATP-dependent DNA hel 72.7 9.7 0.00021 43.2 7.0 60 87-146 499-561 (1195)
201 PRK01297 ATP-dependent RNA hel 72.1 15 0.00033 37.5 8.1 69 89-160 163-242 (475)
202 PRK13766 Hef nuclease; Provisi 71.6 99 0.0021 33.8 14.6 72 86-162 56-138 (773)
203 cd01524 RHOD_Pyr_redox Member 70.7 11 0.00025 28.7 5.3 40 83-122 46-86 (90)
204 COG1197 Mfd Transcription-repa 70.5 15 0.00033 41.4 7.9 88 73-160 627-721 (1139)
205 cd01523 RHOD_Lact_B Member of 70.3 8.6 0.00019 30.0 4.6 41 82-122 55-96 (100)
206 PRK09401 reverse gyrase; Revie 70.3 15 0.00033 42.1 8.1 59 87-145 122-187 (1176)
207 PRK11057 ATP-dependent DNA hel 69.4 13 0.00029 39.5 7.1 59 87-145 64-123 (607)
208 PTZ00110 helicase; Provisional 67.4 13 0.00028 39.0 6.4 69 88-160 203-282 (545)
209 TIGR03817 DECH_helic helicase/ 63.9 19 0.00041 39.3 7.0 69 87-160 80-162 (742)
210 KOG1133 Helicase of the DEAD s 61.7 1.8E+02 0.004 31.4 13.2 76 88-166 629-720 (821)
211 KOG0389 SNF2 family DNA-depend 61.5 23 0.00049 38.5 6.7 67 81-150 441-512 (941)
212 KOG0329 ATP-dependent RNA heli 61.2 14 0.00029 34.9 4.5 68 90-161 112-191 (387)
213 PLN00051 RNA-binding S4 domain 60.9 37 0.00081 32.2 7.6 68 286-360 97-168 (267)
214 TIGR00963 secA preprotein tran 60.8 32 0.0007 37.4 7.9 61 79-146 89-154 (745)
215 COG1111 MPH1 ERCC4-like helica 60.6 1.4E+02 0.003 31.0 11.8 72 88-164 58-140 (542)
216 PRK09751 putative ATP-dependen 57.5 26 0.00056 41.2 6.9 70 88-161 37-130 (1490)
217 PF12683 DUF3798: Protein of u 54.3 42 0.00092 31.8 6.6 156 22-218 4-174 (275)
218 PRK13767 ATP-dependent helicas 53.0 33 0.00073 38.2 6.8 69 89-161 85-178 (876)
219 COG2519 GCD14 tRNA(1-methylade 52.2 59 0.0013 30.6 7.2 44 67-110 167-210 (256)
220 smart00450 RHOD Rhodanese Homo 52.1 21 0.00045 26.9 3.7 37 87-123 55-93 (100)
221 PRK13104 secA preprotein trans 52.0 45 0.00097 37.0 7.3 62 78-146 114-180 (896)
222 TIGR03069 PS_II_S4 photosystem 50.3 72 0.0016 30.0 7.6 69 286-360 88-159 (257)
223 PRK12898 secA preprotein trans 49.4 53 0.0012 35.3 7.3 60 87-153 143-207 (656)
224 cd01444 GlpE_ST GlpE sulfurtra 49.3 47 0.001 25.2 5.4 43 80-122 48-92 (96)
225 smart00493 TOPRIM topoisomeras 49.0 33 0.00071 25.1 4.2 59 91-150 2-60 (76)
226 cd01526 RHOD_ThiF Member of th 48.8 22 0.00049 28.9 3.6 37 86-122 70-109 (122)
227 PF04364 DNA_pol3_chi: DNA pol 48.5 78 0.0017 26.6 6.9 80 75-165 15-96 (137)
228 cd00046 DEXDc DEAD-like helica 48.0 1.2E+02 0.0027 23.6 8.0 71 72-146 11-88 (144)
229 KOG0338 ATP-dependent RNA heli 45.3 54 0.0012 34.0 6.2 69 89-161 253-333 (691)
230 cd01535 4RHOD_Repeat_4 Member 45.0 47 0.001 28.2 5.1 46 77-122 38-85 (145)
231 COG0514 RecQ Superfamily II DN 43.6 49 0.0011 35.0 5.8 58 88-145 57-115 (590)
232 PRK09200 preprotein translocas 43.0 76 0.0016 34.9 7.4 60 79-145 111-176 (790)
233 cd01527 RHOD_YgaP Member of th 42.3 43 0.00092 25.8 4.1 37 86-122 52-90 (99)
234 cd01529 4RHOD_Repeats Member o 42.1 37 0.0008 26.1 3.7 37 86-122 54-92 (96)
235 KOG0335 ATP-dependent RNA heli 41.2 42 0.00091 34.5 4.8 68 89-160 153-231 (482)
236 cd01521 RHOD_PspE2 Member of t 41.1 42 0.0009 26.6 4.0 38 85-122 61-101 (110)
237 PLN00206 DEAD-box ATP-dependen 41.0 66 0.0014 33.5 6.4 69 88-160 196-275 (518)
238 cd01534 4RHOD_Repeat_3 Member 40.5 41 0.00088 25.8 3.7 35 88-122 56-91 (95)
239 cd01528 RHOD_2 Member of the R 40.4 73 0.0016 24.6 5.3 37 87-123 57-95 (101)
240 PF11496 HDA2-3: Class II hist 40.1 2.8E+02 0.0061 26.7 10.1 123 72-194 95-245 (297)
241 cd01533 4RHOD_Repeat_2 Member 39.3 40 0.00086 26.7 3.6 36 88-123 66-104 (109)
242 PRK12899 secA preprotein trans 38.8 96 0.0021 34.8 7.3 53 88-146 135-192 (970)
243 cd01518 RHOD_YceA Member of th 38.8 33 0.00073 26.6 3.0 37 86-122 59-97 (101)
244 PRK00162 glpE thiosulfate sulf 38.8 93 0.002 24.4 5.7 45 78-122 48-94 (108)
245 TIGR00631 uvrb excinuclease AB 38.7 2.1E+02 0.0045 30.9 9.8 106 69-176 37-174 (655)
246 PRK02362 ski2-like helicase; P 38.0 53 0.0011 35.8 5.3 82 72-160 50-142 (737)
247 cd01520 RHOD_YbbB Member of th 37.7 44 0.00096 27.4 3.7 38 86-123 84-123 (128)
248 KOG0343 RNA Helicase [RNA proc 37.0 36 0.00077 35.7 3.5 53 88-145 141-198 (758)
249 TIGR00696 wecB_tagA_cpsF bacte 36.6 1.2E+02 0.0026 26.8 6.5 67 75-141 34-104 (177)
250 KOG0298 DEAD box-containing he 36.2 46 0.001 38.1 4.4 96 86-185 1219-1315(1394)
251 PRK05728 DNA polymerase III su 35.4 78 0.0017 26.8 4.9 82 70-164 10-94 (142)
252 COG3587 Restriction endonuclea 35.1 91 0.002 34.4 6.2 71 136-206 482-565 (985)
253 cd01447 Polysulfide_ST Polysul 34.7 46 0.00099 25.6 3.2 37 86-122 59-97 (103)
254 smart00487 DEXDc DEAD-like hel 34.6 2.7E+02 0.0059 23.2 8.7 85 72-160 35-134 (201)
255 cd01525 RHOD_Kc Member of the 34.5 61 0.0013 25.1 3.9 35 88-122 65-101 (105)
256 COG0610 Type I site-specific r 34.0 2.8E+02 0.0062 31.4 10.3 83 126-209 580-667 (962)
257 COG4359 Uncharacterized conser 33.0 2.6E+02 0.0056 25.2 7.8 47 2-51 74-122 (220)
258 KOG0350 DEAD-box ATP-dependent 32.9 91 0.002 32.4 5.5 72 89-160 216-300 (620)
259 PRK01172 ski2-like helicase; P 32.6 80 0.0017 33.9 5.6 82 72-160 48-140 (674)
260 KOG0340 ATP-dependent RNA heli 32.3 62 0.0013 32.1 4.1 54 88-145 75-133 (442)
261 cd01522 RHOD_1 Member of the R 32.1 1.1E+02 0.0024 24.6 5.2 38 86-123 62-101 (117)
262 PRK12904 preprotein translocas 31.7 1.5E+02 0.0032 32.9 7.3 62 78-146 113-179 (830)
263 PF03808 Glyco_tran_WecB: Glyc 31.5 1.6E+02 0.0035 25.6 6.4 67 75-141 34-105 (172)
264 cd01448 TST_Repeat_1 Thiosulfa 31.2 1.1E+02 0.0024 24.4 5.1 36 87-122 78-116 (122)
265 cd01449 TST_Repeat_2 Thiosulfa 31.0 76 0.0016 25.2 4.0 45 78-122 66-114 (118)
266 cd00158 RHOD Rhodanese Homolog 31.0 84 0.0018 23.0 4.1 37 86-122 48-86 (89)
267 cd01519 RHOD_HSP67B2 Member of 30.5 48 0.001 25.8 2.7 36 87-122 65-102 (106)
268 PF11248 DUF3046: Protein of u 29.8 51 0.0011 24.1 2.4 22 299-320 41-62 (63)
269 PRK00254 ski2-like helicase; P 29.3 1E+02 0.0022 33.5 5.7 67 87-160 67-143 (720)
270 KOG0385 Chromatin remodeling c 29.2 2E+02 0.0043 31.6 7.5 57 86-145 215-275 (971)
271 PRK05298 excinuclease ABC subu 29.0 3.9E+02 0.0084 28.8 10.0 106 69-176 40-177 (652)
272 PLN02160 thiosulfate sulfurtra 28.2 94 0.002 26.0 4.2 38 86-123 79-118 (136)
273 cd01532 4RHOD_Repeat_1 Member 27.5 81 0.0018 24.0 3.5 35 88-122 50-88 (92)
274 cd00032 CASc Caspase, interleu 27.3 3.7E+02 0.008 24.7 8.5 84 87-176 8-108 (243)
275 cd06533 Glyco_transf_WecG_TagA 26.4 2.3E+02 0.0051 24.6 6.6 67 75-141 32-103 (171)
276 PF13245 AAA_19: Part of AAA d 26.4 82 0.0018 23.5 3.2 40 69-108 18-62 (76)
277 smart00115 CASc Caspase, inter 26.3 3.2E+02 0.0069 25.2 7.8 83 87-175 7-106 (241)
278 TIGR00096 probable S-adenosylm 26.0 2.2E+02 0.0047 27.2 6.6 83 73-158 11-93 (276)
279 PF11019 DUF2608: Protein of u 25.9 4.5E+02 0.0098 24.5 8.8 53 66-118 155-209 (252)
280 COG4098 comFA Superfamily II D 25.8 6.8E+02 0.015 25.0 12.3 151 23-200 91-249 (441)
281 KOG0334 RNA helicase [RNA proc 25.7 97 0.0021 34.7 4.7 54 88-145 438-496 (997)
282 COG4152 ABC-type uncharacteriz 25.4 2.8E+02 0.0061 26.4 7.0 81 74-161 165-248 (300)
283 PF12689 Acid_PPase: Acid Phos 24.9 2.5E+02 0.0054 24.6 6.4 121 5-135 45-168 (169)
284 PRK06646 DNA polymerase III su 24.8 1.8E+02 0.0039 25.2 5.4 82 70-164 10-93 (154)
285 COG1201 Lhr Lhr-like helicases 24.5 1.9E+02 0.004 32.1 6.5 67 90-160 75-154 (814)
286 PTZ00424 helicase 45; Provisio 24.0 2.7E+02 0.0058 27.4 7.3 69 88-160 96-175 (401)
287 PF12614 RRF_GI: Ribosome recy 23.8 3E+02 0.0064 23.1 6.2 13 166-178 7-19 (128)
288 PRK15483 type III restriction- 23.2 2.4E+02 0.0052 31.9 7.1 70 137-206 501-580 (986)
289 cd01530 Cdc25 Cdc25 phosphatas 23.2 1.2E+02 0.0026 24.7 3.9 37 86-122 66-117 (121)
290 COG1205 Distinct helicase fami 22.7 1.7E+02 0.0036 32.7 5.9 100 87-190 114-237 (851)
291 COG0553 HepA Superfamily II DN 22.5 47 0.001 36.3 1.7 89 74-180 432-520 (866)
292 PRK06827 phosphoribosylpyropho 21.3 1.8E+02 0.0039 29.1 5.3 59 88-147 264-329 (382)
293 KOG0345 ATP-dependent RNA heli 21.3 1E+02 0.0022 31.7 3.5 68 90-160 81-162 (567)
294 KOG0352 ATP-dependent DNA heli 21.1 1.6E+02 0.0035 30.1 4.8 81 65-146 39-122 (641)
295 PF00581 Rhodanese: Rhodanese- 21.0 1.7E+02 0.0037 22.4 4.3 38 86-123 65-109 (113)
296 COG2302 Uncharacterized conser 20.7 2.2E+02 0.0048 26.7 5.3 78 285-366 86-163 (257)
297 PRK10287 thiosulfate:cyanide s 20.2 1.4E+02 0.003 23.8 3.5 34 88-121 60-94 (104)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.6e-54 Score=446.62 Aligned_cols=352 Identities=28% Similarity=0.440 Sum_probs=300.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||+|||.++++.|+..+|..+|+++||||+|+.+..+++.|+.+|..+.+... ......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~--~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS--VTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc--cccCCceEEEEEEechhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999988876532 2344567777777777789899998
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... ...++||||+|+..++.++..|.. ++.+..+||+|++.+|++++++|++|+++||||||++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88765 357999999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHHccc-Cc
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~-~~ 238 (379)
||||+|.++++|+||+|||||+|+.|.+++|+++.|...++.+++.++..+++..+|..+++.+.....+.+.+... ..
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888887777543 33
Q ss_pred cchhchHHHHHHHHhh-----hCHHHHHHHHHHHcCCCCC------C-----C---CCc-----------------c--c
Q 017020 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP------P-----S---SRS-----------------L--I 280 (379)
Q Consensus 239 ~~~~~~~~~~~~l~~~-----~~~~~~a~al~~~~~~~~~------~-----~---~~~-----------------~--~ 280 (379)
..++.|.+.++++.++ .+++.+|+||+.+.....+ + . .++ . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4577788888888754 5789999999988533211 0 0 000 0 0
Q ss_pred c---CCCCeEEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHHhhhhcccCcce
Q 017020 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYASVRLGLFNTKSV 357 (379)
Q Consensus 281 ~---~~~~~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (379)
. ..++|++|++++|+ +|++.|++|+++|++++|+++.+||+|+|+++++ .++||..+++.++..+++.++
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s----~v~~~~~~~~~~~~~~~~~~~ 550 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASHS----TIELPKGMPGEVLQHFTRTRI 550 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCce----EEEcChhhHHHHHHHhccccc
Confidence 0 12269999999999 9999999999999999999999999999999999 666666666666666655555
Q ss_pred Eeeee
Q 017020 358 IWLTY 362 (379)
Q Consensus 358 ~~~~~ 362 (379)
.++..
T Consensus 551 ~~~~~ 555 (629)
T PRK11634 551 LNKPM 555 (629)
T ss_pred cCCce
Confidence 55444
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-46 Score=374.19 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=192.0
Q ss_pred CCCCChHHHHHHHHHhC-CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHH
Q 017020 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~-p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (379)
||||||.++|+.|+..+ ++.+|+++||||+|.+++.++..||++|..+.+..........++.|....++...|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56779999999999999999999999999998875545667788999999999889999999
Q ss_pred HHHHHHc--CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCcc
Q 017020 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (379)
Q Consensus 80 ~ll~~~~--~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v 156 (379)
.+|..+. .++++||||+|++.|++++..|.. ++++.+|||+.+|.+|+.+++.|++|+..||||||+|+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998874 567999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHh
Q 017020 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (379)
Q Consensus 157 ~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (379)
++|||||+|.++++|+||+|||||+|++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777776554
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-45 Score=374.22 Aligned_cols=220 Identities=43% Similarity=0.724 Sum_probs=201.2
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCcc-HHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (379)
||||||.+|++.|++.+|.++|+++||||||..+.++++.++++|..+.+.......+...+.|+++.++..+ |.++|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888764444447788999999998766 999999
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
.+++... ..++||||+|+..|+.++..|.. ++.+..+||+|+|++|.++++.|++|+.+||||||+++||||||++++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998764 56899999999999999999985 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChh-hHHHHHHHHHHhCCCce-eeCCCCHHHH
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVEDV 221 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~-~~~~p~~~~i 221 (379)
|||||+|.++++|+||+|||||+|++|.+++|+++. |...+..+|+..+..++ ...+|..+..
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~~ 409 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPE 409 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchhh
Confidence 999999999999999999999999999999999986 99999999999887766 4555554433
No 4
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.8e-44 Score=362.35 Aligned_cols=297 Identities=29% Similarity=0.473 Sum_probs=257.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|++|||.++++.|++.+|..+|+++||||+|+.+..++..++.+|..+.+.... ....+.++++.++...|.+.+..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999988765322 23557788888888889999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... .+.++||||+|+..++.++..|.. ++.+..+||+|++.+|+.+++.|++|+.+||||||+++||+|+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 98765 467899999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHHcccCcc
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~ 239 (379)
||||+|.+.++|+||+|||||+|+.|.|++|+++.|...++.+++..+..+++..+|..... .
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~---------------~-- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPL---------------S-- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhc---------------c--
Confidence 99999999999999999999999999999999999999999999999988887766642210 0
Q ss_pred chhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCCccccCCCCeEEEEEeeCCcccCCCCChhHHHHHHhhhCCCCC
Q 017020 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (379)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~ 319 (379)
..+ ....+.++.+..|+ ++++.+++++|++++..++..
T Consensus 378 -------------------------------~~~--------~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GVP--------LLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------ccc--------CCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 000 12468899999998 889999999999999999999
Q ss_pred CccccEEeeeCCceeeeecchhhHHHHhhhhcccCcceEeeeehh
Q 017020 320 DEIGKIHIIADDRVCIDTVILLYFYASVRLGLFNTKSVIWLTYRF 364 (379)
Q Consensus 320 ~~ig~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (379)
.++|.|++.+.++ ..+++....+.....+++.+++++.+++
T Consensus 416 ~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (460)
T PRK11776 416 AQIGKINVTDFHA----YVAVERAVAKKALKKLQNGKIKGKSFRV 456 (460)
T ss_pred hhcCCcccccccc----eeecchhhHHHHHHHhccCCccCceeEE
Confidence 9999999999998 4455555555555566666666666654
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-44 Score=329.20 Aligned_cols=213 Identities=35% Similarity=0.603 Sum_probs=198.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCcc-HHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (379)
||+-||.+++-.|.+.+|++.|++++|||+|.++.+..++||.+|+.+-+. ..+.+.+++++||+.+..++ |.+.|.
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 789999999999999999999999999999999999999999999998554 34566788999999887655 999999
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
++.+.+. -.+++|||||++.++.|.+.+.. ++.+..+||+|+|++|++++++||+|+.+||++||+.+||+|+|.|++
T Consensus 259 dLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 9988774 68999999999999999999985 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
|||||+|.+.+.|+||+||.||.|++|.++-|+...|.+.++.+|++++..+++.+..
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999888876543
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-44 Score=337.23 Aligned_cols=213 Identities=36% Similarity=0.591 Sum_probs=200.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
+|||-|.+++..||+.+|.++|++|||||||+.+.++.+..+++|+.|.+. ....+.++++++|+.++..+|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999998764 456677889999999999999999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
+++.. .+.++||||+|...++.++-.|.. ++.+..+||+|+|..|...++.|++|...||||||+++||+|+|.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99977 478999999999999999999986 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
||||+|.+..+|+||+|||||+|++|.+|.|++..|.+.+.+||...+.+.+..+.+
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999999999999887654333
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.9e-43 Score=339.87 Aligned_cols=271 Identities=33% Similarity=0.491 Sum_probs=221.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcC-CCceEEeecccccccccceEEEEEEcCCccHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (379)
+|||||.+||+.|++.+|..+|++|||||+|++|+++++..|+ +|+.|++++.....+.+.+.|-|+.++...+...+.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 4899999999999999999999999999999999999998887 699999988778888999999888888888888889
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
.+|+.+....++||||+|...+..+++.|.. .++|..+||+++|..|..+..+|++.+..|||||||+|||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 9998875558999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHH-HHHHHHHHHHHHHHcccC
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQVVATLNGVH 237 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~-~i~~~~~~~~~~~l~~~~ 237 (379)
||+||+|.++++|+||+|||||.|++|.++++..|.|...++.++ ..++++.+.|+.. +-.+...+.++..--.+.
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~ 478 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLK 478 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999998 4455554444432 233334444443222222
Q ss_pred ccchhchHHHHHHHHhh-----h--CHHHHHHHHHHHcCCCCCCC
Q 017020 238 PESVEFFTPTAQRLIEE-----K--GTDALAAALAQLSGFSRPPS 275 (379)
Q Consensus 238 ~~~~~~~~~~~~~l~~~-----~--~~~~~a~al~~~~~~~~~~~ 275 (379)
....+.|..+..-+-.. + +.-.++ ++++.+|++.||.
T Consensus 479 ~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp~ 522 (543)
T KOG0342|consen 479 EAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPPA 522 (543)
T ss_pred HHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCcc
Confidence 22222222222221111 1 123456 8899999987763
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.4e-43 Score=341.82 Aligned_cols=203 Identities=40% Similarity=0.640 Sum_probs=185.3
Q ss_pred CCCCChHHHHHHHHHhCCC---C----------------------CcEEEEeeeCChHHHHHHHHhcCCCceEEeecccc
Q 017020 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~---~----------------------~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~ 55 (379)
|+||||.+|+..||.++|. . +|+++||||||+.+..+++.||.+|+.+.+. ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999983 1 7999999999999999999999999998764 33
Q ss_pred cccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhccc
Q 017020 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (379)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~ 134 (379)
....+.++|.++.++..+|...|..++..+ ...++|||+|+++.|+.+++.|.+ ++.+..|||+-+|++|+.+++.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888889999999999876 468999999999999999999986 899999999999999999999999
Q ss_pred CCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHh
Q 017020 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (379)
Q Consensus 135 ~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (379)
+|...||||||+|+||||||+|++|||||++.+.++|+||+|||||+|+.|++++|+++.+...+..|...+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999966555554443
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-41 Score=325.34 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=198.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
+|||||.++++.||+.+|+++.|-|||||+..++.++++..++||+.|.+.......++..+..+|+.|++..|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988766555678889999999999999999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
+|..+ ..+++|||.+|+..+++.+..+.. ...+..+||.|++.+|.++++.|++....+|+|||++|||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99876 478999999999999999988874 67899999999999999999999998889999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHH
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (379)
+||+||+|.++++|+||+|||||+|+.|.+++|+.+.|..++..+.-.-....++...|....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999999888887655445555555554433
No 10
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=325.32 Aligned_cols=271 Identities=29% Similarity=0.425 Sum_probs=219.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||||||.+.++.|++.+|+.+||+|||||.+..+.++++..++||..|.+-......++.+++|+|+.++..+|.++|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988755567789999999999999999999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
++..+ ...+.|||++|++++..+++.+.+ +++..++||.|+|..|..++.+|-....-||+|||+++||+|+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99887 468999999999999999998864 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh-HHHHHHHHHHhCCCceeeCCCCHHHH--HHHHHHHHHHHHc
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV--LESSAEQVVATLN 234 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~i--~~~~~~~~~~~l~ 234 (379)
|||++|+|.++++|+||+|||+|.+..|.++++++|.| ..++..|++.. +.++.+.+. .+.+ .+..++.+...-.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~-~~k~~~i~~~l~~ll~~~~ 463 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKID-PEKLTSIRNKLEALLAKDP 463 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccC-HHHhhhHHHHHHHHHhhCH
Confidence 99999999999999999999999999999999999998 66677777653 555543332 1211 2222222222222
Q ss_pred ccCccchhchHHHHHHHHhhhCHHH------HHHHHHHHcCCCCCC
Q 017020 235 GVHPESVEFFTPTAQRLIEEKGTDA------LAAALAQLSGFSRPP 274 (379)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~------~a~al~~~~~~~~~~ 274 (379)
.+..-....|..+++.+....++.. -+.|++..+|.+..|
T Consensus 464 eLk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p 509 (758)
T KOG0343|consen 464 ELKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTP 509 (758)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCc
Confidence 2222222345555555544333321 156777777765544
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-40 Score=311.13 Aligned_cols=203 Identities=37% Similarity=0.619 Sum_probs=186.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||||||..+|..||-.+.+++|+++.|||+|+.+.+++..|+++|..+- ++.-.-.....+++..+.....+|.+.+..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~-vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVY-VGSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEE-ecccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998774 343333445567788888888899999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++...++..++||||..+..|+.|...|. .++.+..+||+-+|.+|+..++.|++|+++||||||+++||+|+|+++||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99988888999999999999999999887 58999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
+|||+|.+.+.|+||+|||||+|++|.+++|++.+++.+...|-+
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 999999999999999999999999999999999999887776643
No 12
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-39 Score=312.11 Aligned_cols=213 Identities=35% Similarity=0.564 Sum_probs=188.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC---ccHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTI 77 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 77 (379)
||+-||.++|.+|+..+|+++|++||||||+.+|.++++..|++|+.|-+.+ +..+...+.+.|+...+ .++...
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~--~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP--NKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC--ccccchhhhHHHheeccccccccHHH
Confidence 8999999999999999999999999999999999999999999999996643 34456667776665543 357777
Q ss_pred HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCcc
Q 017020 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (379)
Q Consensus 78 L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v 156 (379)
|..++... ...++|||+.|++.|..+.-.|.- ++.+.-+||.|+|.+|-..++.|+++++++|||||+|+||+||++|
T Consensus 417 l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 88887765 368999999999999999988874 8999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHH---hCCCceeeCCC
Q 017020 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD---VGCKFEFVSPP 216 (379)
Q Consensus 157 ~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~---~~~~~~~~~~p 216 (379)
..||||++|.+.+.|+||+|||+|+|+.|.+++|+...|+..++.+-+. .+.++....+|
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~ 558 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIP 558 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCC
Confidence 9999999999999999999999999999999999999999999998766 44555443333
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=295.05 Aligned_cols=210 Identities=30% Similarity=0.540 Sum_probs=198.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||+.-|.+-++.++..+|+++|++|||||+|-.+..+..++|++|..|.+- ++.+..++.+||..+.+.+|...|..
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 578889999999999999999999999999999999999999999999875 45567889999999999999999998
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
+...+. -.++|||||+...++.+|..+.. ++++.++|+.|-|++|.+++.+|++|..+.|||||.+-||||++.+++|
T Consensus 316 LfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 887774 67899999999999999999986 9999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
||||+|.+.++|+||+||.||.|.-|.++.+++-.|+..+.++|..+|..+++++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999988755
No 14
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-38 Score=294.23 Aligned_cols=215 Identities=32% Similarity=0.512 Sum_probs=192.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||+-+|-++++.|.+.+|..+|+++||||+.+.+.++..--..++............+.+.+.+.|+.++...|...|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888876544444222222233455677888999999999899999999
Q ss_pred HHHHHcC--CCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 81 ll~~~~~--~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
+|..+.. .+.++||+||..+|+.++..|.. .+.+..+||.|+|.+|...+.+|+++..+||||||||+||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9987744 67899999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCC
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (379)
+|||||+|.++.+|+||+|||+|+|+.|.+++++++.+.+.+..||...|.+.++...
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999876443
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=299.97 Aligned_cols=191 Identities=32% Similarity=0.576 Sum_probs=164.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|+||||.+||..|+..+...+|++|||||||..|..+++..+-+|+.|++- .. ...+-++-+..-.+..+.|.-.|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVG-RA-GAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVG-RA-GAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecc-cc-cccchhHHHHHHHHHhhhhhhhHHH
Confidence 899999999999999999999999999999999999999999999999864 22 2222222222222333445444444
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.|. ....+++|||..+.+++.+.++|- ++..+.++||+-.|++|...++.|+.|+-+||||||+|+.|+|+|++.||
T Consensus 416 CLQ--KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQ--KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhc--cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 443 246799999999999999999986 69999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
||||+|.+.+.|+||+|||||.|++|.+.+|+..+.
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999998754
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-36 Score=304.65 Aligned_cols=211 Identities=34% Similarity=0.554 Sum_probs=188.8
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH
Q 017020 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~--~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (379)
|+++||..++..|+..+|. .+|+++||||+|..+..++..++.+|..+.+... ......+.+.++.+....|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~--~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE--QKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC--CcCCCceeEEEEeCCHHHHHHHH
Confidence 6899999999999999984 6788999999999999999999999988876432 23345666666666667788888
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
..++... ...++||||+|+..|+.++..|.. ++.+..+||+|++++|..++++|++|+++||||||+++||||+|+++
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8888764 468999999999999999999975 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
+|||||+|.+.++|+||+|||||+|+.|.+++|+++.+...+..++++.+..++..+
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999988875433
No 17
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-36 Score=288.75 Aligned_cols=210 Identities=34% Similarity=0.605 Sum_probs=197.2
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||.-||.|+|..|++.+|++.|++++|||+|+++..+.++|+.+|+.|.+.. ...+...++++|+.+....|.+.|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk--~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKK--DELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecc--hhhhhhheeeeeeeccccccccHHHH
Confidence 7899999999999999999999999999999999999999999999997653 34567889999999888889999888
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
+.+ .-.+++|||||++.++.+...|.. ++.+.++||+|.|.+|+.++..|+.|+.+|||+||.++||+|+.+++.|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 887 357899999999999999999975 7999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCC
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (379)
|||++|...++|+||+||+||.|++|.++.+++..+...++.+|+.++..+++.+.
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999987653
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.5e-36 Score=304.61 Aligned_cols=214 Identities=39% Similarity=0.605 Sum_probs=192.2
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|+++||..++..|+..+|..+|+++||||+|+++..++.+++.+|..+.+... ......+.+++..++...+.+++..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR--NTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc--cccccceeEEEEEcCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999988876432 2334567777777777778888877
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... ...++||||+|+..++.++..|.. ++.+..+||+|++.+|..++++|++|+++||||||+++||+|+|++++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 77653 457999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCC
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~ 217 (379)
|||++|.++++|+||+|||||+|..|.+++|+...|...++.+|+.++.+++...++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~~ 375 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPG 375 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccccCC
Confidence 9999999999999999999999999999999999999999999999988886655443
No 19
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=284.21 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=192.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHHHHH
Q 017020 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (379)
.||.|+--.|...+|++.|.++||||+...+..++.+..++|..+.+. .+.....++.++|+.|+. .+|.++|..+.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 499999999999999999999999999999999999999999888664 344556888888887765 57999988876
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 017020 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
... .-++.||||.|++.|..++..|.. |+.|..+||+|.-.+|..++++||.|..+|||+|+|++||||++.|++|||
T Consensus 326 g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 655 368999999999999999999985 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHHHHhhccCCCCCceEEEEeChh-hHHHHHHHHHHhCCCceeeCCCCHHHH
Q 017020 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPPVVEDV 221 (379)
Q Consensus 162 ~~~P~------~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~p~~~~i 221 (379)
||+|. +.+.|+||+|||||.|+.|.++.++... ....+..|+++++.++....+.+.+++
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99995 7899999999999999999999999765 567888999999999988777555544
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.1e-36 Score=308.64 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=183.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcC-CCceEEeecccccccccceEEEEEEcCCccHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (379)
||+|||.+++..|+..+++++|+++||||+|.++..+++.++. +|..+.+... ......++.+.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 5777765322 2233456777777777778888888
Q ss_pred HHHHHHc-CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 80 ~ll~~~~-~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
.++.... .+.++||||+|++.|+.++..|.. ++.+..+||+|++++|+.++++|++|+.+||||||+++||||+|+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887653 567999999999999999999984 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhC
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (379)
+|||||+|.+.++|+||+|||||+|+.|.|++|+++.+...++.+.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888877766643
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=296.16 Aligned_cols=202 Identities=41% Similarity=0.657 Sum_probs=178.3
Q ss_pred CCC-CChHHHHHHHHHhCCC----CCcEEEEeeeCChHHHHHHHHhcCC-CceEEeecccccccccceEEEEEEcCCccH
Q 017020 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (379)
Q Consensus 1 mL~-~GF~~di~~Il~~~p~----~~Q~llfSAT~p~~i~~l~~~~l~~-p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (379)
||| |||.++|.+|+..... ++|++|||||.|+++..++..|+.+ ...+.+. .......++.+....+...+|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998854 8999999999999999999999986 5555543 234456888888888888889
Q ss_pred HHHHHHHHHHHc---CCC-----cEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 75 ~~~L~~ll~~~~---~~~-----~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
...|.+++.... ..+ +++|||.|++.|+.++..|.. ++++..+||+-+|.+|++.++.|++|+..+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888887542 223 899999999999999999985 89999999999999999999999999999999999
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
+++||+|+|+|+||||||+|.+..+|+||+|||||+|+.|.+..|++.......+.|-+
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999766555555433
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-35 Score=306.53 Aligned_cols=210 Identities=34% Similarity=0.539 Sum_probs=188.0
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH
Q 017020 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~--~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (379)
|+++||.+++..|+..+|. .+|+++||||++..+..++..++.+|..+.+.. .......+.++++.+...+|...+
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6899999999999999997 789999999999999999999999987765432 223445677777777767788887
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
..++... .+.++||||+|+..|+.+++.|.. ++.+..+||+|++.+|+.+++.|++|+.+||||||++++|||+|+++
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777654 467999999999999999999975 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceee
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (379)
+|||||+|.+.++|+||+|||||.|+.|.|++|+++.+...+..+++.++.+++..
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999999999999988777543
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.5e-34 Score=291.67 Aligned_cols=209 Identities=31% Similarity=0.534 Sum_probs=186.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCCh-HHHHHHHHhcCCCceEEeecccccccccceEEEEEEcC-CccHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~-~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L 78 (379)
|+++||..+++.|...++...|+++||||++. .+..++..++.+|..+.+... .....++.+++..+. ...|.+.|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999999999985 588999999999988876532 233456677766654 35688888
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
..++... ...++||||+++..++.++..|.. ++.+..+||+|++.+|..+++.|++|+++||||||++++|+|+|+++
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8887653 468999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCcee
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
+|||||+|.+.+.|+||+|||||+|..|.++++++..|...+..+++++...++.
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999988776644
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2e-34 Score=296.53 Aligned_cols=204 Identities=28% Similarity=0.452 Sum_probs=179.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|+++||.+++..|+..++ ++|+++||||+|+++..++..++.++..+.+.. .......+.+.++.+....|...+..
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 789999999999999986 689999999999999999999999998887642 22334556777777777777777888
Q ss_pred HHHHHc-CCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 81 LITVYA-KGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 81 ll~~~~-~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
++.... ...++||||+|+..++.++..|.. ++.+..+||+|++.+|..++++|++|+.+||||||+++||+|+|+++
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 776542 236899999999999999999963 78999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhC
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (379)
+|||||+|.+.++|+||+|||||+|..|.+++|+++.+...+..+.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877777766543
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-33 Score=285.75 Aligned_cols=209 Identities=33% Similarity=0.578 Sum_probs=186.5
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH
Q 017020 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~--~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (379)
|+++||..++..|+..++. ++|+++||||++..+.++++.++.+|..+.+... .....++.+++..+...+|...+
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEecchhHHHHH
Confidence 4789999999999999975 6799999999999999999999999988766432 22334556666666667888888
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc
Q 017020 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~ 157 (379)
..++... ...++||||++++.++.++..|.. ++.+..+||+|++++|.++++.|++|++++|||||++++|||+|+++
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8887654 357999999999999999999975 78999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCcee
Q 017020 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 158 ~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
+||+|++|.+..+|+||+||+||.|+.|.+++|++++|..++..+|+.++.+++.
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~ 460 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISC 460 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999999999999988753
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=269.21 Aligned_cols=206 Identities=26% Similarity=0.477 Sum_probs=188.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
||..||.+|+..|.+.+|+..|.+|+|||+..++..+-+.++++|+.+.+... +...+.++.||++.|..++|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~-el~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG-ELPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc-cCCCcccceEEEEEeccchhHHHHHH
Confidence 68899999999999999999999999999999999999999999999887643 33456889999999999999999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-------------
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------------- 146 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv------------- 146 (379)
+++..--.++.|||+||.+.|..+...|+. |+..+.+.|.||.+.|-.++++|..|.++|+||||.
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 987654468999999999999999999987 899999999999999999999999999999999992
Q ss_pred ----------------------cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 147 ----------------------AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 147 ----------------------~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
++||||+.+|.+|+|||+|.++.+|+||+|||+|++++|.+++|+.|.|..-...+|.
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 3699999999999999999999999999999999999999999999999876666665
Q ss_pred HhC
Q 017020 205 DVG 207 (379)
Q Consensus 205 ~~~ 207 (379)
...
T Consensus 421 ~~~ 423 (569)
T KOG0346|consen 421 ILK 423 (569)
T ss_pred HHh
Confidence 543
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-33 Score=270.85 Aligned_cols=202 Identities=35% Similarity=0.552 Sum_probs=176.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcC-CccHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~ 79 (379)
|.+|||..++..|-+++.+++|+|+||||++..|..+++.+|.+|+.+... .-...+..|.|.+..++ ...|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcHHHHHHHH
Confidence 899999999999999999999999999999999999999999999987443 22233455655554444 456777766
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
.-|......+++|||+..+..+++++..|. +++.+..+||+|.|.+|.+++.+|+.+...||||||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 666555557899999999999999999997 5899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
|||||+-.+++.|.||+|||||+|..|.+|+++++++....-.|-+
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHH
Confidence 9999999999999999999999999999999999999765554433
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.3e-32 Score=272.77 Aligned_cols=213 Identities=32% Similarity=0.586 Sum_probs=185.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~ 79 (379)
+++.||...+..++..++++.|++++|||+|.++.++...++.+|..+.+... .....++.+++...+. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD--ELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC--CcccCCceEEEEecChHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999887754322 2234556666666543 34566666
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
.++... ...++||||+|++.++.++..|.. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 666544 357899999999999999999975 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCC
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (379)
||+||+|.+..+|+||+||+||.|+.|.|++++++++...++.+|+.....++..+++
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 9999999999999999999999999999999999999999999999999887765443
No 29
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=274.26 Aligned_cols=207 Identities=30% Similarity=0.481 Sum_probs=176.5
Q ss_pred CCCCChHHHHHHHHHhC-------------CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeeccc-------------
Q 017020 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ------------- 54 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~-------------p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~------------- 54 (379)
+||+||.+||+.|++.+ |...|.+|+||||...|.+++...++||+.|......
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999887 2358999999999999999999999999999722100
Q ss_pred ----------ccccccceEEEEEEcCCccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhcC----------
Q 017020 55 ----------DEKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (379)
Q Consensus 55 ----------~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~~---------- 111 (379)
...+++++.+.|..+|+.-++-.|..+|... ....++|||.++.+.++.=+..+...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 0223556678888888888887777777543 23568999999999999777665421
Q ss_pred -------------CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhc
Q 017020 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (379)
Q Consensus 112 -------------~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRt 178 (379)
..+.-+||+|+|++|..+++.|+.....||.||||++||+|+|+|++||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 1356799999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeChhhHHHHHHHHHHhC
Q 017020 179 GRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (379)
Q Consensus 179 gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (379)
+|+|..|.+++|..|.|.++++.++.+..
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999999999999999999999987754
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.7e-33 Score=276.19 Aligned_cols=225 Identities=33% Similarity=0.522 Sum_probs=183.7
Q ss_pred CCCCChHHHHHHHHHhCC-----CCCcEEEEeeeCChH---------------------HHHHHHH--hcCCCceEEeec
Q 017020 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPSW---------------------VKKLSRK--YLDNPLNIDLVG 52 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p-----~~~Q~llfSAT~p~~---------------------i~~l~~~--~l~~p~~i~~~~ 52 (379)
|++-|+.+++..||..+. ..+|++.||||++-. +..+.+. +..+|..|++..
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~ 431 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP 431 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCc
Confidence 789999999999999986 468999999998431 2222221 224677777653
Q ss_pred ccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHh
Q 017020 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (379)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~ 131 (379)
...+...+..-.+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-.|.. +++...+|+.|.|.+|.+.++
T Consensus 432 --q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 432 --QSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred --chhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 3334444444455566666666666666555 68999999999999999999986 899999999999999999999
Q ss_pred cccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCce
Q 017020 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (379)
Q Consensus 132 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (379)
+|++....|||||||||||+|||+|+|||||.+|.+.+.|+||+|||+|++..|.++.++.|.|...+++|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877766
Q ss_pred eeCCCCHHHHHHHHHHHH
Q 017020 212 FVSPPVVEDVLESSAEQV 229 (379)
Q Consensus 212 ~~~~p~~~~i~~~~~~~~ 229 (379)
.-..|..+.++....+++
T Consensus 588 lpifPv~~~~m~~lkeRv 605 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKERV 605 (731)
T ss_pred CCceeccHHHHHHHHHHH
Confidence 544666677766554444
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.6e-32 Score=281.47 Aligned_cols=204 Identities=36% Similarity=0.609 Sum_probs=188.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcC-CccHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~ 79 (379)
|+||||.+.+..|++.+++.+|+++||||+|..+..+++..++.|+.|.+.+ .......+.+.+..++ ...|...|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~--~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGG--RSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEcc--ceeEeccceEEEEEecCchHHHHHHH
Confidence 7899999999999999999999999999999999999999999999876543 3345566777776666 788999999
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
.+|..+....++||||.....|+.+...|.+ ++.+..+||+.+|.+|+.+++.|+++.+++||||++++||+|++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9998887789999999999999999999986 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHh
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (379)
|||||+|...++|+||+|||||+|++|.|++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999888888888877
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=3.2e-30 Score=274.34 Aligned_cols=232 Identities=19% Similarity=0.271 Sum_probs=176.7
Q ss_pred ChHHHHHHHHHhC-------CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcC-------
Q 017020 5 GFEEDVELILENL-------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT------- 70 (379)
Q Consensus 5 GF~~di~~Il~~~-------p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~------- 70 (379)
.|..++..+++.+ +.++|+++||||++.... ++++++.+|..+ +. ... .......+.++..+
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~-~~~-~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VT-EDG-SPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-EC-CCC-CCcCceEEEEecCCccccccc
Confidence 3777766666543 567899999999998754 677888877544 22 111 11122222222221
Q ss_pred ---------CccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc---------CCcEEEeeCCCCHHHHHHHHhc
Q 017020 71 ---------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNG 132 (379)
Q Consensus 71 ---------~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---------~~~v~~lhg~m~~~~R~~~~~~ 132 (379)
...+...+..++. .+.++||||+|++.|+.++..|.. +..+..+||+|++++|.+++++
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 1124444555543 468999999999999999998753 3578899999999999999999
Q ss_pred ccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeC--hhhHHHHHHHHHHhCCCc
Q 017020 133 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKF 210 (379)
Q Consensus 133 F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~--~~e~~~l~~le~~~~~~~ 210 (379)
|++|++++|||||++++|||||++++||||+.|.+.++|+||+|||||.|+.|.++++.. +.|...+..+++.++.++
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999986 567778888898988888
Q ss_pred eee-CCCCHHHHHHHHHHHHHHHHcccCccchhch
Q 017020 211 EFV-SPPVVEDVLESSAEQVVATLNGVHPESVEFF 244 (379)
Q Consensus 211 ~~~-~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 244 (379)
+.. ..|....++..++..+..++ .+..++.+.|
T Consensus 405 e~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~ 438 (742)
T TIGR03817 405 EATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELF 438 (742)
T ss_pred ccceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhh
Confidence 763 44777778888777766554 3444444444
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3e-31 Score=253.55 Aligned_cols=212 Identities=33% Similarity=0.484 Sum_probs=196.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
+++|||.+++.+|+..+|..+|+++||||+|....++++..+.+|..|.+. -+..+.+.++..+..+...+|..+|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999998764 245567788888888888999999999
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++.....+.+++|||.|+..|+.+...|.. ++.+..++|.|.+..|...+.+|+.++..+||.||+++||+|||-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 988765567899999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
||||+|.+...|+||+||+.|+|++|.+|.++.+.+..++-.|.-.++..+....
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 9999999999999999999999999999999999999999999999988776543
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.96 E-value=5.1e-29 Score=266.47 Aligned_cols=199 Identities=19% Similarity=0.252 Sum_probs=156.4
Q ss_pred CCCCC--hHHHHHHH--HHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCcc-HH
Q 017020 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KR 75 (379)
Q Consensus 1 mL~~G--F~~di~~I--l~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~ 75 (379)
|++.| |+++...+ +....++.|+++||||+++.+.+.+...+.-...+.+... . ...++. |...+... ..
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-f--~RpNL~--y~Vv~k~kk~l 667 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-F--NRPNLW--YSVVPKTKKCL 667 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-c--CccceE--EEEeccchhHH
Confidence 35667 88888764 4444567899999999999988866666653222222211 1 123332 22222222 23
Q ss_pred HHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC
Q 017020 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (379)
Q Consensus 76 ~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip 154 (379)
..+..++.....+.++||||+|+++|+.++..|.. ++.+..+||+|++++|..++++|++|+++|||||+++++|||+|
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 747 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCcc
Confidence 44555554433456899999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 155 ~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
+|++||||++|.++++|+||+|||||.|..|.|++||+..|...++.+..
T Consensus 748 DVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 748 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988877776653
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=1.5e-29 Score=252.05 Aligned_cols=190 Identities=29% Similarity=0.509 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCc--------cHH
Q 017020 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (379)
-.|.++|..|+..+|..+|++.||||.|........+||++|..|..... ....-++++|++..+.. .|.
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 35999999999999999999999999999999999999999999977532 33456788887765542 277
Q ss_pred HHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC
Q 017020 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (379)
Q Consensus 76 ~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip 154 (379)
+.|.++++.+ +..++||||+....|+.++..|.. |+.|.++.|.|+|.+|..+++.+|.-..+|||+||+.+||||-|
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 7788888776 467999999999999999999985 99999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhH
Q 017020 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 155 ~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
++++|||.|+|.+.++|.||+||+||.|..|.+++|+...+.
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999876543
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.2e-28 Score=251.26 Aligned_cols=196 Identities=23% Similarity=0.378 Sum_probs=154.3
Q ss_pred CCCC--hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHhc--CCCceEEeecccccccccceEEEEEEcCCccH
Q 017020 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (379)
Q Consensus 2 L~~G--F~~di~~I---l~~~p~~~Q~llfSAT~p~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (379)
++.| |+++...| .... ++.|++++|||+++.+.......+ .+|..+... .. ..++.. .+.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~--r~nl~~-~v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FD--RPNLYY-EVRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CC--CCCcEE-EEEeCCccH
Confidence 4555 77776654 3444 578999999999998876655554 355544221 11 123322 222222234
Q ss_pred HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCC
Q 017020 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi 153 (379)
.+.+..++....++..+||||+|++.|+.++..|.. ++.+..+||+|++++|..++++|++|+++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444555554333456779999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred CccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 154 p~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
|+|++||||++|.+.++|+||+|||||.|..|.|++++++.+...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888877754
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.8e-29 Score=248.18 Aligned_cols=199 Identities=30% Similarity=0.469 Sum_probs=173.9
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEc-CCccHHHHHHHHH
Q 017020 5 GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST-TATSKRTILSDLI 82 (379)
Q Consensus 5 GF~~di~~Il~~~p-~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~-~~~~k~~~L~~ll 82 (379)
+|.+++..|++.+. ++..+-+||||+|..++++++..+.++..|.+. ..+. ....+.|..+.+ ....|.-++..++
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg-~~~s-a~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG-LRNS-ANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe-cchh-HhhhhhhhheeeecchhHHHHHHHHH
Confidence 89999999999885 466777999999999999999999999888553 2222 244555554444 4457888888888
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHh--cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE
Q 017020 83 TVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~--~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 160 (379)
..- -..+++||+.+.+.|.+|...|. .++.+.++||+.++.+|+.++++||.|++++|||||+++||+|+.+++.||
T Consensus 383 ~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 383 ASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred hcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 764 46899999999999999999995 488999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHh
Q 017020 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (379)
Q Consensus 161 ~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (379)
|||+|.+.-+|+||+||+||+|+.|.+|+||+..+..+++.++...
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 9999999999999999999999999999999999999988886654
No 38
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=1.8e-27 Score=248.73 Aligned_cols=235 Identities=16% Similarity=0.243 Sum_probs=166.9
Q ss_pred CCCChHHHHHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC---------
Q 017020 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA--------- 71 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p-~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~--------- 71 (379)
+.+| +.+..++...+ ..+|+++||||+|.++..+ ..|+++|..+.+.+ .+...++++|+....
T Consensus 304 ~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~ 376 (675)
T PHA02653 304 DQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYI 376 (675)
T ss_pred ccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhh
Confidence 4455 45666666554 4469999999999998887 57999998887642 233556777764331
Q ss_pred -ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcc-cCCceeEEEecc
Q 017020 72 -TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATD 145 (379)
Q Consensus 72 -~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F-~~g~~~iLVaTd 145 (379)
..+..++..+.... ..++++||||+++.+++.+++.|.. ++.+..+||+|++. ++.+++| ++|+.+||||||
T Consensus 377 ~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATd 454 (675)
T PHA02653 377 EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTP 454 (675)
T ss_pred HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccC
Confidence 12333333333222 1356899999999999999999985 58899999999985 5677777 789999999999
Q ss_pred ccccCCCCCccceEEecC---CCC---------ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceee
Q 017020 146 VAARGLDIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~---~P~---------~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (379)
+|+||||||+|++||++| .|. +.++|+||+|||||. ++|.|+.|+++.+...+
T Consensus 455 IAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI-------------- 519 (675)
T PHA02653 455 YLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPI-------------- 519 (675)
T ss_pred hhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHH--------------
Confidence 999999999999999999 665 888999999999999 79999999999874222
Q ss_pred CCCCHHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 017020 214 SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (379)
Q Consensus 214 ~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~ 271 (379)
.++....+..++..++.+.....+.+ +++.++.+.+.+|+..|...+
T Consensus 520 -----~ri~~~~L~~~vL~lk~~g~~~~~~~------~ldpP~~~~l~~A~~~L~~lg 566 (675)
T PHA02653 520 -----KRIDSEFLHNYILYAKYFNLTLPEDL------FVIPSNLDRLRKTEEYIDSFN 566 (675)
T ss_pred -----HHHhHHHHHHHHHHHHHcCCCCcccc------cCCCCCHHHHHHHHHHHHHcC
Confidence 22222223444444444433221111 566677777777666664443
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=1.7e-27 Score=249.27 Aligned_cols=189 Identities=20% Similarity=0.371 Sum_probs=148.7
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHhc--CCCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 6 F~~di~~I---l~~~p~~~Q~llfSAT~p~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|++++..| .+.. ++.|++++|||+++.+.......+ .+|... ... . ...++.. .......+...+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~--~r~nl~~--~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--F--DRPNIRY--TLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--C--CCCccee--eeeeccchHHHHHH
Confidence 77665444 4444 478999999999988766444443 344432 211 1 1223322 22222334444555
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... .+.++||||+|+++|+.++..|.. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 55443 468999999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHH
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le 203 (379)
||||+|.+.++|+||+|||||.|..|.|++|+++.+...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987777664
No 40
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=8.3e-27 Score=248.90 Aligned_cols=243 Identities=17% Similarity=0.240 Sum_probs=175.9
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHH----
Q 017020 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (379)
Q Consensus 1 mL~~GF~~d-i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (379)
||+.+|.-. +..+.+.++++.|+++||||++... ...|+.++..|.+.+. ...++++|...+..++.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 355444322 3455666788999999999998754 3568877766765432 12356777665444432
Q ss_pred -HHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccC
Q 017020 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (379)
Q Consensus 76 -~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rG 150 (379)
..+..++.. ..+++||||+++.+++.++..|.. ++.+..+||+|++++|.++++.|++|..+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333332 357899999999999999999974 5789999999999999999999999999999999999999
Q ss_pred CCCCccceEEecCCCC------------------ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCcee
Q 017020 151 LDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 151 iDip~v~~VI~~~~P~------------------~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
||||+|++|||+++|. +..+|.||+||+||. +.|.||.+++..+...+ ..+
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l---~~~------- 344 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRL---PAQ------- 344 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhh---hcC-------
Confidence 9999999999999885 335699999999999 69999999998775433 221
Q ss_pred eCCCCHHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 017020 213 VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (379)
Q Consensus 213 ~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~ 273 (379)
...+|....+..++-.+..+...+...| .+++.+...++.+|+..|...+..
T Consensus 345 ----~~PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lgal 396 (819)
T TIGR01970 345 ----DEPEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGAL 396 (819)
T ss_pred ----CCcceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCCC
Confidence 1234455555556666665543333323 356677778888887777554433
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=1.4e-26 Score=244.12 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=141.9
Q ss_pred CCCChHHHHHHHHHhC--CCC---CcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH
Q 017020 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (379)
Q Consensus 2 L~~GF~~di~~Il~~~--p~~---~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (379)
|+|||.++++.|++.+ |+. +|+++||||+|.++.+++..++.+|..+.+.. ......++.++ +.++...|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999988988887776542 22333455554 3333334443
Q ss_pred HHHHHH-HHH-cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHH-----HHHhcccC----Cc-------
Q 017020 77 ILSDLI-TVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRE-----RTLNGFRQ----GK------- 137 (379)
Q Consensus 77 ~L~~ll-~~~-~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~-----~~~~~F~~----g~------- 137 (379)
.+...+ ... ..++++||||||++.|+.+++.|.. ++ ..+||+|+|.+|+ .++++|++ |+
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 322222 111 2457899999999999999999975 44 8999999999999 88999987 44
Q ss_pred eeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCC-ceEEEEeC
Q 017020 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMFT 192 (379)
Q Consensus 138 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~-g~~i~l~~ 192 (379)
..||||||++++|+||+. ++||++..| .++|+||+||+||.|+. +..+.++.
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 689999999999999986 899998776 69999999999999975 34355553
No 42
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=1.7e-26 Score=246.93 Aligned_cols=233 Identities=18% Similarity=0.251 Sum_probs=177.1
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH-----HHHHHHHHH
Q 017020 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (379)
Q Consensus 11 ~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~L~~ll~~~ 85 (379)
..+++.++++.|+++||||++.+ .+ ..|+.++..|.+.+. ...++++|+..+..++.+ .+..++..
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 34567788899999999999875 23 467877776755432 123677777665544443 23333322
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
..+.+||||+++.+++.+++.|.. ++.+..+||+|++.+|.++++.|++|+.+||||||++++|||||+|++|||
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 368999999999999999999974 577999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------------ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHH
Q 017020 162 YELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (379)
Q Consensus 162 ~~~P~------------------~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~ 223 (379)
+++|. +.++|.||+||+||. ..|.||.++++.+...+ ......||+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l--------------~~~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA--------------AAQSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhC--------------ccCCCCceec
Confidence 88774 346899999999999 59999999999775321 1222346777
Q ss_pred HHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 017020 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (379)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~ 273 (379)
..+..++-.++.+...+...| .+++.+....+.+|+..|...+..
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lgal 399 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLGAL 399 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCCCC
Confidence 777777777777654433333 467778888888888877554443
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=8.1e-26 Score=236.51 Aligned_cols=189 Identities=23% Similarity=0.414 Sum_probs=152.5
Q ss_pred hHHHHHHHH---HhCCCCCcEEEEeeeCChHHHHHHHHhcC--CCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 6 F~~di~~Il---~~~p~~~Q~llfSAT~p~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|+++...|. ..+| +.+++++|||+|+.+.......+. ++..+ ... . ...++. +.......+...+..
T Consensus 146 frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~--~~~-~--~r~nl~--~~v~~~~~~~~~l~~ 217 (591)
T TIGR01389 146 FRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF--ITS-F--DRPNLR--FSVVKKNNKQKFLLD 217 (591)
T ss_pred cHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE--ecC-C--CCCCcE--EEEEeCCCHHHHHHH
Confidence 777665554 4444 456999999999998876666665 33333 211 1 122332 222233456666667
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
++... .+.++||||+|++.|+.+++.|.. ++.+..+||+|++++|+.+++.|.+|+++|||||+++++|||+|++++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 76654 367999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHH
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le 203 (379)
|||++|.+.++|+||+||+||.|..|.|++++++.+...++.+.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777664
No 44
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=224.44 Aligned_cols=199 Identities=27% Similarity=0.420 Sum_probs=168.8
Q ss_pred HHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecc--cccccccceEEEEEEcCCccHHHHHHHHHHHHc
Q 017020 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYA 86 (379)
Q Consensus 9 di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~--~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~ 86 (379)
++...+..+++..+.++||||+...-.++..--++.|....+... ..-.++..+.++++.+...-|.-.+..++...
T Consensus 349 e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~- 427 (620)
T KOG0350|consen 349 ELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN- 427 (620)
T ss_pred HHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-
Confidence 344444445667789999999988777778777888866554421 12345677888888888777888888888876
Q ss_pred CCCcEEEEecccccHHHHHHHHh-c----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 017020 87 KGGKTIVFTQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~-~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
+..++|+|+++.+.+..++..|. . .+.+..+.|.+++..|.+.+++|+.|.+++|||||+++||+|+.+++.|||
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 47899999999999999999987 1 467788999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCC
Q 017020 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (379)
Q Consensus 162 ~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~ 208 (379)
||+|.+...|+||+|||||+|+.|.||.+.+..+.+.+.++-+..+.
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999888887766654
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=2.9e-24 Score=231.73 Aligned_cols=191 Identities=18% Similarity=0.280 Sum_probs=150.8
Q ss_pred HHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcC
Q 017020 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (379)
Q Consensus 8 ~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~ 87 (379)
.+....++.++.+.|+++||||+++....++...+.++..|...+. . ...+.+++.... ...+...++.....
T Consensus 587 v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~--R~~V~t~v~~~~---~~~i~~~i~~el~~ 659 (926)
T TIGR00580 587 VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--D--RLPVRTFVMEYD---PELVREAIRRELLR 659 (926)
T ss_pred hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--C--ccceEEEEEecC---HHHHHHHHHHHHHc
Confidence 3456677888889999999999888777777667777777754321 1 123455444322 11222233333445
Q ss_pred CCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~ 164 (379)
+++++||||+++.++.+++.|.. ++.+..+||+|++.+|++++++|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 78999999999999999999985 578999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhHHHHHHhhccCCCCCceEEEEeCh------hhHHHHHHHHHH
Q 017020 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERD 205 (379)
Q Consensus 165 P~-~~~~yiqR~GRtgR~G~~g~~i~l~~~------~e~~~l~~le~~ 205 (379)
|. +..+|+||+||+||.|+.|.||+++.+ .....++.+++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 678999999999999999999999864 345566666554
No 46
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.92 E-value=1.6e-24 Score=236.56 Aligned_cols=240 Identities=18% Similarity=0.339 Sum_probs=174.3
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCcc---HHH
Q 017020 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (379)
Q Consensus 1 mL~~GF~~d-i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (379)
||+++|... +..++... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 688999853 44444433 46899999999975 46776665555 46554321 23456665543221 233
Q ss_pred HHHHHHHH---H--cCCCcEEEEecccccHHHHHHHHhc-CC---cEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc
Q 017020 77 ILSDLITV---Y--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (379)
Q Consensus 77 ~L~~ll~~---~--~~~~~~IIF~~t~~~~~~l~~~L~~-~~---~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~ 147 (379)
.+..++.. . ...+.+||||+++.+++.+++.|.. ++ .+.++||+|++++|.++++. .|..+|+||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 34333322 1 2457899999999999999999985 43 47899999999999999987 4788999999999
Q ss_pred ccCCCCCccceEEecC---------------CC---CChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCC
Q 017020 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (379)
Q Consensus 148 ~rGiDip~v~~VI~~~---------------~P---~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (379)
++|||||+|++|||++ +| .+.++|.||+|||||. .+|.||.+|++.+...+ .
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~---~------ 417 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR---P------ 417 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh---h------
Confidence 9999999999999986 34 4568999999999999 69999999998764322 1
Q ss_pred ceeeCCCCHHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCC
Q 017020 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (379)
Q Consensus 210 ~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~ 271 (379)
.-+..+|++..+..++..++.+...++..| .+++.++.+.+..++..|...+
T Consensus 418 -----~~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~Lg 469 (1294)
T PRK11131 418 -----EFTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEELG 469 (1294)
T ss_pred -----cccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHCC
Confidence 112346777777788888877765555555 4677888888888877775444
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=1e-23 Score=233.81 Aligned_cols=220 Identities=23% Similarity=0.336 Sum_probs=154.4
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcC-CCceEEeecccccccccceEEEEEEcCCccH----------
Q 017020 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSK---------- 74 (379)
Q Consensus 6 F~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k---------- 74 (379)
|...++.|...++.+.|+|++|||+++ ..++++.... +|+.| +.....+ ...+..+ +......+
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~~ 219 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTGE 219 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhcccccccccc
Confidence 556778888888888999999999987 4666653332 35444 2211111 1223221 22111000
Q ss_pred -----------HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC--------------------------------
Q 017020 75 -----------RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------- 111 (379)
Q Consensus 75 -----------~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-------------------------------- 111 (379)
..+...++.....+.++||||||++.|+.++..|.+.
T Consensus 220 ~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1490)
T PRK09751 220 DSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSS 299 (1490)
T ss_pred ccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccc
Confidence 0112334444445689999999999999999988642
Q ss_pred --CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCC-CCCceEE
Q 017020 112 --IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAI 188 (379)
Q Consensus 112 --~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~-G~~g~~i 188 (379)
+.+.+|||+|++++|..+++.|++|++++||||+++++|||++++++||||+.|.++.+|+||+||+||. |..+.++
T Consensus 300 ~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 300 DVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred cceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 1256899999999999999999999999999999999999999999999999999999999999999996 3345555
Q ss_pred EEeChhhHHHHH---HHHHHhCCCceeeCCCC-HHHHHHHHHHHHHH
Q 017020 189 LMFTSSQRRTVR---SLERDVGCKFEFVSPPV-VEDVLESSAEQVVA 231 (379)
Q Consensus 189 ~l~~~~e~~~l~---~le~~~~~~~~~~~~p~-~~~i~~~~~~~~~~ 231 (379)
++... ....+. -++.+....+|...+|. .-+++..++-.+..
T Consensus 380 i~p~~-r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~ 425 (1490)
T PRK09751 380 FFPRT-RRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAA 425 (1490)
T ss_pred EEeCc-HHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHh
Confidence 44333 222232 47888888898866654 44677666555444
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=4.5e-24 Score=234.68 Aligned_cols=194 Identities=16% Similarity=0.243 Sum_probs=149.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHH
Q 017020 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (379)
Q Consensus 4 ~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (379)
+|+.. ..+++.++.++|+++||||+++.+..++..++.++..|..... . ...++++...... ......++.
T Consensus 734 fG~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~~---~~~k~~il~ 804 (1147)
T PRK10689 734 FGVRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYDS---LVVREAILR 804 (1147)
T ss_pred cchhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecCc---HHHHHHHHH
Confidence 45542 4567888899999999999988888888888889988764321 1 1234444433221 112233343
Q ss_pred HHcCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE
Q 017020 84 VYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (379)
Q Consensus 84 ~~~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 160 (379)
....+++++||||+++.++.+++.|.. +..+..+||+|++.+|++++.+|++|+.+|||||+++++|+|+|++++||
T Consensus 805 el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VI 884 (1147)
T PRK10689 805 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 (1147)
T ss_pred HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEE
Confidence 344578999999999999999999975 46899999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CChhHHHHHHhhccCCCCCceEEEEeCh------hhHHHHHHHHHHh
Q 017020 161 HYELP-NDPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERDV 206 (379)
Q Consensus 161 ~~~~P-~~~~~yiqR~GRtgR~G~~g~~i~l~~~------~e~~~l~~le~~~ 206 (379)
..+.+ .+...|+||+||+||.|+.|.|++++.+ .....++.|+...
T Consensus 885 i~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1147)
T ss_pred EecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhc
Confidence 44332 3556799999999999999999999854 3355666666654
No 49
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.91 E-value=4e-24 Score=210.46 Aligned_cols=180 Identities=24% Similarity=0.321 Sum_probs=132.1
Q ss_pred HHHHHHhCC-CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEE--EcCCccHHHHHHHHHHHHc
Q 017020 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (379)
Q Consensus 10 i~~Il~~~p-~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~L~~ll~~~~ 86 (379)
+..+++.++ .+.|+++||||+|+.+.++++.+...+....... ... .....+.+. ......+...+..++....
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL-KEE--RRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC-ccc--cccccccceeeccccccCHHHHHHHHHHhh
Confidence 555665554 5789999999999888887766544322111110 000 001122221 1222356677777777665
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CC--cEEEeeCCCCHHHHHH----HHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDISQHQRER----TLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~--~v~~lhg~m~~~~R~~----~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.++++||||||++.|+.++..|.. +. .+..+||+|++.+|.+ +++.|++|..++|||||++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 678999999999999999999975 33 5899999999999976 48999999999999999999999995 8899
Q ss_pred EecCCCCChhHHHHHHhhccCCCCC----ceEEEEeChhh
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTSSQ 195 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~----g~~i~l~~~~e 195 (379)
|++..| +++|+||+||+||.|+. |..+++....+
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 998876 78999999999998844 36677765433
No 50
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=6.5e-24 Score=215.99 Aligned_cols=192 Identities=26% Similarity=0.388 Sum_probs=150.7
Q ss_pred hHHHHHHHH---HhCCCCCcEEEEeeeCChHHHHHHHHhcC--CCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 6 F~~di~~Il---~~~p~~~Q~llfSAT~p~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|++|-..+- ..+| +.+++.++||.++.+..-+...|. +|..+... . ..+|+........ +.+.... .
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---f--dRpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---F--DRPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---C--CCchhhhhhhhcc-cHHHHHH-H
Confidence 777766554 4455 889999999999998887766665 44333221 1 1233332222221 1222222 2
Q ss_pred HHH-HHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 81 ll~-~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
+.+ .....+..||||.|++.|+.+++.|.. ++.+..+||||+.++|+.+.++|.+++.+|+|||..+++|||-|||.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 222 123456799999999999999999985 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHH
Q 017020 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (379)
Q Consensus 159 VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (379)
|||||+|.++++|+|-+||+||.|....|++|+++.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877776544
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=4.6e-23 Score=223.56 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=143.3
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCC-----CceEEeecccccccccceEEEE-----EEcCCccHHHHHH
Q 017020 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN-----PLNIDLVGNQDEKLAEGIKLYA-----ISTTATSKRTILS 79 (379)
Q Consensus 10 i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~-----p~~i~~~~~~~~~~~~~i~~~~-----~~~~~~~k~~~L~ 79 (379)
++.+....+...|++++|||+++ ..++++..... +..+.++...... ...+.... ...........+.
T Consensus 197 L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~ 274 (876)
T PRK13767 197 LERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVK-PFDIKVISPVDDLIHTPAEEISEALY 274 (876)
T ss_pred HHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCc-cceEEEeccCccccccccchhHHHHH
Confidence 44444555568899999999975 33444332221 2222222111100 01111100 0011111112222
Q ss_pred H-HHHHHcCCCcEEEEecccccHHHHHHHHhc-------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCC
Q 017020 80 D-LITVYAKGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (379)
Q Consensus 80 ~-ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGi 151 (379)
. +......++++||||||++.|+.++..|.. +..+.++||+|++++|..++++|++|+.++||||+++++||
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GI 354 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGI 354 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcC
Confidence 2 223334468999999999999999999875 25799999999999999999999999999999999999999
Q ss_pred CCCccceEEecCCCCChhHHHHHHhhccCC-CCCceEEEEeChh-h-HHHHHHHHHHhCCCceeeCCCC-HHHHHHHHHH
Q 017020 152 DIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTSS-Q-RRTVRSLERDVGCKFEFVSPPV-VEDVLESSAE 227 (379)
Q Consensus 152 Dip~v~~VI~~~~P~~~~~yiqR~GRtgR~-G~~g~~i~l~~~~-e-~~~l~~le~~~~~~~~~~~~p~-~~~i~~~~~~ 227 (379)
|+|++++||+|+.|.++.+|+||+||+||. |..+.++++.... | .+....++......++...+|. ..+++..++.
T Consensus 355 Dip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~ 434 (876)
T PRK13767 355 DIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIV 434 (876)
T ss_pred CCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999986 4444555554432 2 2223344566666777755553 3556655544
Q ss_pred HHH
Q 017020 228 QVV 230 (379)
Q Consensus 228 ~~~ 230 (379)
.+.
T Consensus 435 ~~~ 437 (876)
T PRK13767 435 GMA 437 (876)
T ss_pred HHH
Confidence 433
No 52
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.8e-23 Score=216.35 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=136.4
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHH-cCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~ 100 (379)
.+..||||.+.+..++.+.|..++..|..... . .....+.++.+...+|..+|.+++... ..+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp---~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRP---S-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCC---c-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 45679999999999999999888776654211 1 122334455566678888888888764 335789999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC---ccc-----eEEecCCCCChhHH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip---~v~-----~VI~~~~P~~~~~y 171 (379)
++.++..|.. ++++..+||++++.++ .+..|+.+...|+||||+|+||+||+ +|. |||||++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE~--~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEEA--AIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHHH--HHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999985 8999999999665554 44555555557999999999999999 676 99999999999999
Q ss_pred HHHHhhccCCCCCceEEEEeChhh
Q 017020 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 172 iqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
.||+|||||+|..|.+++|++..|
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhH
Confidence 999999999999999999999866
No 53
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.90 E-value=5e-23 Score=225.52 Aligned_cols=242 Identities=17% Similarity=0.292 Sum_probs=174.5
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC------cc
Q 017020 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (379)
Q Consensus 1 mL~~GF~~d-i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (379)
||+++|.-. +..++...| +.|+|+||||++. ..+++.|.+.| .|.+.+.. ..+..+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~rp-dLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRRP-DLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhCC-CCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888865 677776654 7899999999974 56776554444 45554321 223444443321 12
Q ss_pred HHHHHHHHHHHH--cCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc
Q 017020 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (379)
Q Consensus 74 k~~~L~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~ 147 (379)
+.+.+...+... ...+.+|||+++..+++.+++.|.. .+.+..+||+|++++|.++++.+. ..+|+||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 333343333322 2358999999999999999999974 345889999999999999987653 36899999999
Q ss_pred ccCCCCCccceEEecCCC------------------CChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCC
Q 017020 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (379)
Q Consensus 148 ~rGiDip~v~~VI~~~~P------------------~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (379)
++|||||+|++||+++++ .+.++|.||+||+||.| .|.||.+++..+...+. .
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~---~----- 411 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP---E----- 411 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh---h-----
Confidence 999999999999999853 36689999999999998 99999999987753321 1
Q ss_pred ceeeCCCCHHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 017020 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (379)
Q Consensus 210 ~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~ 273 (379)
-+..+|++..+..++..+..+...++..| .+++.++.+.+..|+..|...+..
T Consensus 412 ------~~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LGAl 464 (1283)
T TIGR01967 412 ------FTDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELGAL 464 (1283)
T ss_pred ------ccCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCCCC
Confidence 12346777778888888877655444444 467788888888888777544433
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=1.2e-22 Score=217.40 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=142.0
Q ss_pred CCCCChHHHHHHHHHhC---CCCCcEEEEeeeCChHHHHHHHHhcCC-------CceEEeecccccccccceEEEEEEcC
Q 017020 1 MLAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDN-------PLNIDLVGNQDEKLAEGIKLYAISTT 70 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~---p~~~Q~llfSAT~p~~i~~l~~~~l~~-------p~~i~~~~~~~~~~~~~i~~~~~~~~ 70 (379)
|++.++...++.++..+ +++.|++++|||+|. ..+++.+.-.. |+.+...-.........-.+..+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~- 226 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV- 226 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC-
Confidence 34667888888887665 568999999999975 45555543211 2111100000000000001111111
Q ss_pred CccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC-------------------------------------Cc
Q 017020 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-------------------------------------~~ 113 (379)
..+...+..+++....++++||||+|++.|+.++..|... ..
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 227 -PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred -ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1223344444444446789999999999999988877531 36
Q ss_pred EEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe----cC-----CCCChhHHHHHHhhccCCCC-
Q 017020 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGK- 183 (379)
Q Consensus 114 v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~-----~P~~~~~yiqR~GRtgR~G~- 183 (379)
+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||+|.
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 889999999999999999999999999999999999999999999997 76 68999999999999999995
Q ss_pred -CceEEEEeChhhHHHHHHHHHHhCCCc
Q 017020 184 -EGTAILMFTSSQRRTVRSLERDVGCKF 210 (379)
Q Consensus 184 -~g~~i~l~~~~e~~~l~~le~~~~~~~ 210 (379)
.|.+++++.+.+. .-+.+++++....
T Consensus 386 ~~G~~ii~~~~~~~-~~~~~~~~l~~~~ 412 (737)
T PRK02362 386 PYGEAVLLAKSYDE-LDELFERYIWADP 412 (737)
T ss_pred CCceEEEEecCchh-HHHHHHHHHhCCC
Confidence 4999999976532 2223445554333
No 55
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=4.9e-24 Score=192.78 Aligned_cols=169 Identities=28% Similarity=0.565 Sum_probs=143.1
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH
Q 017020 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (379)
Q Consensus 5 GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 84 (379)
..+.|+++|.+.+|.+.|+++||||++++++.++++||.||..|-+. .....+..++++||+......|...+.++|+.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 35789999999999999999999999999999999999999988543 44556678899999999999999999999998
Q ss_pred HcCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC
Q 017020 85 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (379)
Q Consensus 85 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~ 164 (379)
+. -.+++||+.+... | + | ..+ +||||+.+||+||..++.|+|||+
T Consensus 281 Le-FNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LE-FNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hh-hcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 84 6799999987653 1 0 3 123 899999999999999999999999
Q ss_pred CCChhHHHHHHhhccCCCCCceEEEEeChh-hHHHHHHHHHHhCCC
Q 017020 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCK 209 (379)
Q Consensus 165 P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~ 209 (379)
|.++++|.||+||+||.|..|.++.|++.. +...+..++......
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~ 371 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVN 371 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhcc
Confidence 999999999999999999999999999865 445555555544433
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=6.6e-22 Score=209.61 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=135.9
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCC
Q 017020 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG 89 (379)
Q Consensus 10 i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~ 89 (379)
....+...+..+|+++||||..+....+......++..++.. ... ...+..++.. ...+..++..+......+.
T Consensus 399 qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~--p~~--r~~i~~~~~~--~~~~~~~~~~i~~~~~~g~ 472 (681)
T PRK10917 399 QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL--PPG--RKPITTVVIP--DSRRDEVYERIREEIAKGR 472 (681)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC--CCC--CCCcEEEEeC--cccHHHHHHHHHHHHHcCC
Confidence 344455556679999999998766555543222233333211 111 1234444332 2333344444444445678
Q ss_pred cEEEEecccc--------cHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccce
Q 017020 90 KTIVFTQTKR--------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (379)
Q Consensus 90 ~~IIF~~t~~--------~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~ 158 (379)
+++|||++.+ .++.+++.|.. ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|+|+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 9999999654 45566777764 367999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-ChhHHHHHHhhccCCCCCceEEEEeC-h---hhHHHHHHHHH
Q 017020 159 IIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT-S---SQRRTVRSLER 204 (379)
Q Consensus 159 VI~~~~P~-~~~~yiqR~GRtgR~G~~g~~i~l~~-~---~e~~~l~~le~ 204 (379)
||+++.|. ....|.||+||+||.|..|.|+++++ + .....++.+++
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 99999997 57888899999999999999999995 3 24445555554
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.89 E-value=5e-22 Score=212.23 Aligned_cols=206 Identities=23% Similarity=0.301 Sum_probs=141.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccce-EEEEEEcCCc--cHH-H
Q 017020 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SKR-T 76 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i-~~~~~~~~~~--~k~-~ 76 (379)
|.+.++...++.++..++...|++++|||+|. ..+++. ++..+... . ..........+ .+.+...... .+. .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~-~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV-S-DWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc-C-CCCCCcceeeEecCCeeeccCcchhcchH
Confidence 34678889999999999999999999999976 466776 44432211 1 00110110011 0111111111 110 1
Q ss_pred HH-HHHHHHHcCCCcEEEEecccccHHHHHHHHhc----------------------------------CCcEEEeeCCC
Q 017020 77 IL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDI 121 (379)
Q Consensus 77 ~L-~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~----------------------------------~~~v~~lhg~m 121 (379)
.. ..+.+....++++||||+|++.|+.++..|.. ...+.++||+|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 11 11222233468999999999999887766531 12588999999
Q ss_pred CHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe-------cCCCC-ChhHHHHHHhhccCCC--CCceEEEEe
Q 017020 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMF 191 (379)
Q Consensus 122 ~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~-------~~~P~-~~~~yiqR~GRtgR~G--~~g~~i~l~ 191 (379)
++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+||+||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 55544 5679999999999976 679999999
Q ss_pred ChhhHHHHHHHHHHhCCCcee
Q 017020 192 TSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 192 ~~~e~~~l~~le~~~~~~~~~ 212 (379)
.+.+... .++++....++.
T Consensus 386 ~~~~~~~--~~~~~~~~~pe~ 404 (720)
T PRK00254 386 TTEEPSK--LMERYIFGKPEK 404 (720)
T ss_pred cCcchHH--HHHHHHhCCchh
Confidence 8755222 245555555544
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=2.7e-21 Score=203.54 Aligned_cols=167 Identities=22% Similarity=0.283 Sum_probs=123.3
Q ss_pred CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccc
Q 017020 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (379)
Q Consensus 20 ~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~ 99 (379)
.+|+++||||+++....+.....-+...++... .. ...+..+++. ...+..++..+......+.+++|||++.+
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--~~--r~~i~~~~~~--~~~~~~~~~~i~~~l~~g~q~~v~~~~i~ 459 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--PG--RKPITTVLIK--HDEKDIVYEFIEEEIAKGRQAYVVYPLIE 459 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC--CC--CCceEEEEeC--cchHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 689999999986654444321111222222111 11 1233333332 23344444444444456789999999764
Q ss_pred --------cHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCC-C
Q 017020 100 --------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-D 167 (379)
Q Consensus 100 --------~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~-~ 167 (379)
.++.+++.|.. ++.+..+||+|++++|+.++++|++|+.+|||||+++++|+|+|++++||+++.|. +
T Consensus 460 ~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~g 539 (630)
T TIGR00643 460 ESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFG 539 (630)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCC
Confidence 45567777764 57799999999999999999999999999999999999999999999999999986 6
Q ss_pred hhHHHHHHhhccCCCCCceEEEEeC
Q 017020 168 PETFVHRSGRTGRAGKEGTAILMFT 192 (379)
Q Consensus 168 ~~~yiqR~GRtgR~G~~g~~i~l~~ 192 (379)
...|.||+||+||.|+.|.|++++.
T Consensus 540 ls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 540 LSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHhhhcccCCCCcEEEEEEC
Confidence 7888999999999999999999993
No 59
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.87 E-value=6.5e-22 Score=190.19 Aligned_cols=190 Identities=31% Similarity=0.493 Sum_probs=151.1
Q ss_pred CCCCChHHHHHHHHHhCCC------CCcEEEEeeeCCh-HHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCc-
Q 017020 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (379)
Q Consensus 1 mL~~GF~~di~~Il~~~p~------~~Q~llfSAT~p~-~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~- 72 (379)
+|..|+-|-|......+|. ..|.+++|||+.. ++..+.++.|+-|..+++.+. ...++.+.|....+.+.
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge--D~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE--DLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc--cccchhhccceeecCCcc
Confidence 3567888888888888873 5799999999954 688899999999999987643 23344444433322110
Q ss_pred c---------------------------------HHHHH-----HHHHHHHcCCCcEEEEecccccHHHHHHHHhc----
Q 017020 73 S---------------------------------KRTIL-----SDLITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (379)
Q Consensus 73 ~---------------------------------k~~~L-----~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---- 110 (379)
+ ...+| ...++.+ ...++||||.|+.+|+.|...+..
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 0 00011 1111222 246999999999999999999973
Q ss_pred CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEE
Q 017020 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 111 ~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
.+++.++||+..+.+|.+.++.|+.+..+.|||||+++||+||.++.++||.-+|.+...|+||+||.||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eCh
Q 017020 191 FTS 193 (379)
Q Consensus 191 ~~~ 193 (379)
+..
T Consensus 612 vat 614 (725)
T KOG0349|consen 612 VAT 614 (725)
T ss_pred eec
Confidence 753
No 60
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=2.2e-21 Score=209.04 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=139.8
Q ss_pred cHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHh-c-CCcEEEeeCCCCHHHHHHHHhcccCC--ceeEEEeccccc
Q 017020 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (379)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~-~-~~~v~~lhg~m~~~~R~~~~~~F~~g--~~~iLVaTdv~~ 148 (379)
.|.+.|.++++.. .+.++||||+++..++.+++.|. . ++.+..+||+|++.+|+++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4666777777665 36899999999999999999995 3 89999999999999999999999984 599999999999
Q ss_pred cCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCC--CceeeCCCCHHHHHHHHH
Q 017020 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (379)
Q Consensus 149 rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~--~~~~~~~p~~~~i~~~~~ 226 (379)
+|+|++.+++|||||+|++++.|.||+||+||.|+++.+.+++...+......+.+.+.. .+-....|+.+++.+...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988777765555556666665544 556788999999999888
Q ss_pred HHHHHHHccc
Q 017020 227 EQVVATLNGV 236 (379)
Q Consensus 227 ~~~~~~l~~~ 236 (379)
..+...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 8887777554
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.5e-20 Score=198.42 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=132.9
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH-HcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~ 100 (379)
.+..+|.|...+-.++.+.|--+ .+.+ +...........- .+.....+|..++...+.. +..+.++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~I-Pt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME--VVQI-PTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc--EEEC-CCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 45678999876666776666332 2222 2111111111111 2234456788888777754 3457899999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCC---Cccc-----eEEecCCCCChhHH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi---p~v~-----~VI~~~~P~~~~~y 171 (379)
++.++..|.. ++++..+||+++++++..+..+++.| .|+||||+|+||+|| |+|. |||||++|.+...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999985 89999999999999999999888877 699999999999999 7998 99999999999999
Q ss_pred HHHHhhccCCCCCceEEEEeChhhH
Q 017020 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 172 iqR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
.||+|||||.|.+|.++.|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999998663
No 62
>PRK09401 reverse gyrase; Reviewed
Probab=99.85 E-value=4.6e-21 Score=211.46 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=133.3
Q ss_pred CChH-HHHHHHHHhCCC------------------------CCcEEEEeeeCChH-HHHHHHHhcCCCceEEeecccccc
Q 017020 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (379)
Q Consensus 4 ~GF~-~di~~Il~~~p~------------------------~~Q~llfSAT~p~~-i~~l~~~~l~~p~~i~~~~~~~~~ 57 (379)
|||. ++|+.|++.+|. +.|+++||||+++. +.. .++.++..+.+.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999998875 78999999999875 332 2334555555432 223
Q ss_pred cccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEeccccc---HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcc
Q 017020 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (379)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~---~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F 133 (379)
...++.+.|+.++ ++.+.|..++... +.++||||+|+.. |+.++..|.. ++.+..+||+| ++.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777888888765 3589999999988 9999999985 89999999999 2345999
Q ss_pred cCCceeEEEe----ccccccCCCCCc-cceEEecCCCC------ChhHHHHHHhhccC
Q 017020 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (379)
Q Consensus 134 ~~g~~~iLVa----Tdv~~rGiDip~-v~~VI~~~~P~------~~~~yiqR~GRtgR 180 (379)
++|+++|||| ||+++||||+|+ |++|||||+|. ..+.|.||+||+-.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 77899999999953
No 63
>PRK01172 ski2-like helicase; Provisional
Probab=99.85 E-value=1.1e-20 Score=200.75 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=127.7
Q ss_pred CCCChHHHHHHHHHh---CCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceE---EEEEEcCCccHH
Q 017020 2 LAVGFEEDVELILEN---LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKR 75 (379)
Q Consensus 2 L~~GF~~di~~Il~~---~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~---~~~~~~~~~~k~ 75 (379)
.|.++...++.++.. .+++.|++++|||++. ..+++++ +..+. +... ....+....+. ..+.........
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~w-l~~~~-~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQW-LNASL-IKSN-FRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHH-hCCCc-cCCC-CCCCCeEEEEEecCeeeecccccccc
Confidence 455666777777654 4568999999999975 5667764 33221 1100 00000000010 011111111111
Q ss_pred HHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhcC--------------------------CcEEEeeCCCCHHHHHH
Q 017020 76 TILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRER 128 (379)
Q Consensus 76 ~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~~--------------------------~~v~~lhg~m~~~~R~~ 128 (379)
. +..++.. ...++++||||+|++.|+.++..|... ..+..+||+|++++|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1 2233332 345789999999999999999887531 24788999999999999
Q ss_pred HHhcccCCceeEEEeccccccCCCCCccceEEecC---------CCCChhHHHHHHhhccCCC--CCceEEEEeChhh
Q 017020 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (379)
Q Consensus 129 ~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~---------~P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e 195 (379)
+++.|++|.++|||||+++++|+|+|+..+|| ++ .|.++.+|.||+|||||.| ..|.+++++...+
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999999999999876555 33 3568899999999999998 4677888876543
No 64
>PRK14701 reverse gyrase; Provisional
Probab=99.83 E-value=2.9e-20 Score=209.44 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=144.5
Q ss_pred CChHHHHHH----HHH----------------------hCCCCCc-EEEEeeeCChHHHHHHHHhcCCCceEEeeccccc
Q 017020 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (379)
Q Consensus 4 ~GF~~di~~----Il~----------------------~~p~~~Q-~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~ 56 (379)
|||.+|+.. |+. .+|..+| +++||||+++.-. ...+++++..+.+.. ..
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~--~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGS--GR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEecC--CC
Confidence 799999975 543 3456667 5779999986311 123446666665532 23
Q ss_pred ccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccH---HHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhc
Q 017020 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDA---DEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (379)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~---~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~ 132 (379)
....++.+.|+.+....+ ..+.++++.. +..+||||+|++.+ ++++..|.. ++.+..+||+ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 445678888876654445 5667777665 46899999999875 899999985 8999999996 8999999
Q ss_pred ccCCceeEEEec----cccccCCCCCc-cceEEecCCCC---ChhHHHHHH-------------hhccCCCCCceEEEEe
Q 017020 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (379)
Q Consensus 133 F~~g~~~iLVaT----dv~~rGiDip~-v~~VI~~~~P~---~~~~yiqR~-------------GRtgR~G~~g~~i~l~ 191 (379)
|++|+.+||||| |+++||||+|+ |.+|||||+|. +.+.|.|.. ||+||.|..+.++..+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888777766 9999999888887766
Q ss_pred ChhhHHHHHHH
Q 017020 192 TSSQRRTVRSL 202 (379)
Q Consensus 192 ~~~e~~~l~~l 202 (379)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.83 E-value=1.1e-19 Score=200.79 Aligned_cols=150 Identities=23% Similarity=0.405 Sum_probs=115.7
Q ss_pred CChHHH-HHHHH----------------------HhCCCCCc--EEEEeee-CChHHHHHHHHhcCCCceEEeecccccc
Q 017020 4 VGFEED-VELIL----------------------ENLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEK 57 (379)
Q Consensus 4 ~GF~~d-i~~Il----------------------~~~p~~~Q--~llfSAT-~p~~i~~l~~~~l~~p~~i~~~~~~~~~ 57 (379)
|||.+| ++.|+ +.+|..+| +++|||| +|..+.. .+++++..+++.. ...
T Consensus 225 lGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~ 299 (1171)
T TIGR01054 225 LGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSD 299 (1171)
T ss_pred cCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccc
Confidence 899875 66654 34566666 5679999 5765543 3455666666532 233
Q ss_pred cccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEeccc---ccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcc
Q 017020 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (379)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~---~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F 133 (379)
...++.+.++.+.. +...|.+++... +.++||||+|+ +.|++++..|.. ++.+..+||+|++ .++++|
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHH
Confidence 45678888775543 345667777665 46899999999 999999999985 8999999999973 689999
Q ss_pred cCCceeEEEe----ccccccCCCCCc-cceEEecCCCC
Q 017020 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN 166 (379)
Q Consensus 134 ~~g~~~iLVa----Tdv~~rGiDip~-v~~VI~~~~P~ 166 (379)
++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999 599999999999 89999999873
No 66
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.83 E-value=1.4e-19 Score=193.78 Aligned_cols=194 Identities=21% Similarity=0.324 Sum_probs=154.2
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeeeCChHHHHHHHHhcC--CCceEEeecccccccccceEEEEEEcCCccHHHHHHH
Q 017020 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (379)
Q Consensus 6 F~~di~~I---l~~~p~~~Q~llfSAT~p~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (379)
|+++-.++ ....| ...+|.++||.+..+.+-+-..|+ +|..+.- . ....|+...+......+....+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~---s--fnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKS---S--FNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecc---c--CCCCCceEEEEeccCccchHHHHH
Confidence 55554443 34444 489999999999888876655554 6664321 1 223444443333222233333444
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.+..+.+...+||||.++.+|+.++..|.. ++.+.+||+||+..+|+.+..+|..++++|+|||=++++|||.|+|..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 445555788999999999999999999986 8899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHH
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (379)
|||.+|.+.+.|.|-+||+||.|....|++|+...+...++.+-..
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999988888776543
No 67
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=1.8e-19 Score=189.88 Aligned_cols=140 Identities=27% Similarity=0.385 Sum_probs=120.9
Q ss_pred HHHHHHHHHH-HHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCC
Q 017020 74 KRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (379)
Q Consensus 74 k~~~L~~ll~-~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGi 151 (379)
+.+.+..-+. ....+.++||||+|+..++.++..|.. ++.+..+||++++.+|..+++.|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 3444444443 334578999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CCCccceEEecCC-----CCChhHHHHHHhhccCCCCCceEEEEeCh---------hhHHHHHHHHHHhCCCceeeC
Q 017020 152 DIPNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 152 Dip~v~~VI~~~~-----P~~~~~yiqR~GRtgR~G~~g~~i~l~~~---------~e~~~l~~le~~~~~~~~~~~ 214 (379)
|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++. .|...++.++..++.+....+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999885 78999999999999996 78999999984 577788888888877765543
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=3e-19 Score=187.14 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=130.7
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH-HcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|...+..++.+-|--+- +.+. ........... -.+......|..++...+.. +..+.++||||+|++.
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~v--~~IP-t~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLSV--VKIP-TNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCCE--EEcC-CCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH
Confidence 456788898777777776663222 2222 11111111111 12334445788777776654 3567899999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC---------ccceEEecCCCCChhH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPET 170 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip---------~v~~VI~~~~P~~~~~ 170 (379)
++.++..|.. ++++..+||++.++++..+..+++.| .|+||||+|+||+||| ++.+|++|++|....+
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid 514 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD 514 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH
Confidence 9999999985 89999999999999999999888888 6999999999999999 9999999999998777
Q ss_pred HHHHHhhccCCCCCceEEEEeChhhH
Q 017020 171 FVHRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 171 yiqR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
.||+|||||+|.+|.++.|++..|.
T Consensus 515 -~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 515 -LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred -HHhhhcccCCCCceeEEEEEccchh
Confidence 9999999999999999999998664
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.82 E-value=2.8e-19 Score=176.12 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=112.6
Q ss_pred HHHHhCCCCCcEEEEeeeCChHHHHHHHHh--cCCCceEEeecc--cc---------------cccccceEEEEEEcCCc
Q 017020 12 LILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTAT 72 (379)
Q Consensus 12 ~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~--l~~p~~i~~~~~--~~---------------~~~~~~i~~~~~~~~~~ 72 (379)
.++...+...+++++|||+|+++.+..+.. +..|..+ +.+. .. ..+.+.+.+.+.. ...
T Consensus 173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD 250 (357)
T ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccccccccceeccceEEEEEe-CCc
Confidence 444444456799999999999988877654 4444322 1221 00 0111345555554 334
Q ss_pred cHHHHHHHHHHHH------cCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEe
Q 017020 73 SKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (379)
Q Consensus 73 ~k~~~L~~ll~~~------~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVa 143 (379)
.+.+.+..+++.. .+++++||||||++.++.++..|.. ++.+..+||.+++.+|++.. +..||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVa 324 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLG 324 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEE
Confidence 4555554444322 2457999999999999999999985 35788999999999997653 6789999
Q ss_pred ccccccCCCCCccceEEecCCCCChhHHHHHHhhcc
Q 017020 144 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (379)
Q Consensus 144 Tdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtg 179 (379)
||+++||+|+|.+ +|| ++ |.+.++|+||+||||
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999999987 666 55 899999999999997
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=2.1e-19 Score=187.41 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=132.0
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH-HHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD-LITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|...+..++.+-|--+-+.| . ...........-. +.....+|..++.. +...+..+.++||||+|+..
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv~I--P-tnkp~~R~d~~d~-i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVVVV--P-TNRPVIRKDLSDL-VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEEEe--C-CCCCeeeeeCCCe-EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 455689999877777777774432222 2 1111111111111 22233456665544 44555678999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCc-------cceEEecCCCCChhHHH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETFV 172 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~-------v~~VI~~~~P~~~~~yi 172 (379)
++.++..|.. ++++..+||+ +.+|+..+..|+.+...|+||||+|+||+||+. ..|||+++.|.+...|.
T Consensus 418 se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~ 495 (745)
T TIGR00963 418 SELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDN 495 (745)
T ss_pred HHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHH
Confidence 9999999985 8999999999 899999999999999999999999999999998 55999999999999999
Q ss_pred HHHhhccCCCCCceEEEEeChhhH
Q 017020 173 HRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 173 qR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
||.|||||.|.+|.+..|++..|.
T Consensus 496 q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 496 QLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHhccccCCCCCcceEEEEeccHH
Confidence 999999999999999999998764
No 71
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.81 E-value=5.9e-19 Score=185.18 Aligned_cols=132 Identities=24% Similarity=0.388 Sum_probs=114.9
Q ss_pred cHHHHHHHHH-HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccC
Q 017020 73 SKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (379)
Q Consensus 73 ~k~~~L~~ll-~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rG 150 (379)
.+.+.|..-+ .....+.++||||+|++.++.++..|.. ++.+..+||++++.+|.++++.|+.|++.|||||+++++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 3444444444 3345678999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred CCCCccceEEecC-----CCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHH
Q 017020 151 LDIPNVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (379)
Q Consensus 151 iDip~v~~VI~~~-----~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (379)
+|+|++++||++| .|.+..+|+||+|||||. ..|.++++++..+..+.+.++..
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999988 799999999999999998 58999999998776666655443
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.81 E-value=9e-19 Score=179.92 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEec-cccccC
Q 017020 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (379)
Q Consensus 74 k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT-dv~~rG 150 (379)
+...+..++... ..+.+++|||++.+.++.+++.|.. +..+..+||+|++++|..+++.|++|+..+|||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 444444444332 3467899999999999999999985 8899999999999999999999999999999998 999999
Q ss_pred CCCCccceEEecCCCCChhHHHHHHhhccCCCCCce
Q 017020 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT 186 (379)
Q Consensus 151 iDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~ 186 (379)
+|+|++++||++.+|.+...|+||+||++|.+..+.
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 999999999999999999999999999999875543
No 73
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=5.1e-19 Score=147.89 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=112.3
Q ss_pred EEEEEEcCCccHHHHHHHHHHHHc-CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeE
Q 017020 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (379)
Q Consensus 63 ~~~~~~~~~~~k~~~L~~ll~~~~-~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~i 140 (379)
.+++...+ ..|...+..++.... .++++||||++...++.++..|.. ...+..+||++++.+|..+++.|+++...+
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444433 267777777776553 468999999999999999999975 788999999999999999999999999999
Q ss_pred EEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEE
Q 017020 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 141 LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
|++|+++++|+|+|++++||.+++|.+...|.|++||++|.|..|.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999998888764
No 74
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2e-18 Score=181.40 Aligned_cols=168 Identities=22% Similarity=0.243 Sum_probs=130.8
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHH-HHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~-~~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|...+..++.+-|--+ .+.+. ........... -.+......|..++...+. .+..+.|+||||+|+..
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IP-tnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIP-TNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcC-CCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 45568899877777777666433 22222 11111111111 1122334567777766664 34567899999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCC---Cccc-----eEEecCCCCChhHH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi---p~v~-----~VI~~~~P~~~~~y 171 (379)
++.++..|.. ++++..+||++.+.+++.+.++++.|. |+||||+|+||+|| ++|. |||+++.|.+...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 9999999985 899999999999999999998888886 99999999999999 5899 99999999999999
Q ss_pred HHHHhhccCCCCCceEEEEeChhh
Q 017020 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 172 iqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
.|+.|||||.|.+|.+..|++.+|
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999998875
No 75
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=3.9e-17 Score=172.14 Aligned_cols=201 Identities=22% Similarity=0.334 Sum_probs=141.2
Q ss_pred HHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCC--CceEEeecccccccccceEEEEEEcCCc------cHHHHHHHH
Q 017020 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN--PLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTILSDL 81 (379)
Q Consensus 10 i~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~--p~~i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~L~~l 81 (379)
++.+....+ +.|.|.+|||..+ ...+++..... +..|--+ ... ...+...+.+... .-..++..+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~--~~~---k~~~i~v~~p~~~~~~~~~~~~~~~~~i 246 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDV--SAA---KKLEIKVISPVEDLIYDEELWAALYERI 246 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEc--ccC---CcceEEEEecCCccccccchhHHHHHHH
Confidence 344444555 8999999999953 34445433333 3333211 111 1122222222111 112233333
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhcC--CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.+.......+|||+||+..++.++..|... ..+..+||.++.++|..+.++|++|+.+++|||+.++-|||+.+++.|
T Consensus 247 ~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlV 326 (814)
T COG1201 247 AELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLV 326 (814)
T ss_pred HHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEE
Confidence 333344568999999999999999999863 689999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccC-CCCCceEEEEeChhh--HHHHHHHHHHhCCCceeeCCCC
Q 017020 160 IHYELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQ--RRTVRSLERDVGCKFEFVSPPV 217 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR-~G~~g~~i~l~~~~e--~~~l~~le~~~~~~~~~~~~p~ 217 (379)
|||+.|.++...+||+||+|+ .|....++++....+ ..-..-........++...+|.
T Consensus 327 Iq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 327 IQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred EEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 999999999999999999996 455677777777632 1223334556666777555543
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.8e-18 Score=170.16 Aligned_cols=123 Identities=33% Similarity=0.555 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-CCcE--EEe-------eCCCCHHHHHHHHhcccCCce
Q 017020 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIAS--EAL-------HGDISQHQRERTLNGFRQGKF 138 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v--~~l-------hg~m~~~~R~~~~~~F~~g~~ 138 (379)
..|++.+.+++... ..+.++|||++.+++++.+...|.. +..+ .++ ..||+|.++.+++++|++|++
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 35777777777654 3457999999999999999999986 4433 222 257999999999999999999
Q ss_pred eEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 139 ~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
++||||++++.|+|||+++.||.|++-.|+--++||.|||||. +.|.++++++...
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 9999999999999999999999999999999999999999997 7999999998763
No 77
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.2e-17 Score=176.95 Aligned_cols=168 Identities=21% Similarity=0.231 Sum_probs=130.4
Q ss_pred EEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH-HcCCCcEEEEecccccH
Q 017020 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDA 101 (379)
Q Consensus 23 ~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~ 101 (379)
+-.||.|...+-.++.+-|--+-+.| +...........- .+......|..++...+.. +..+.++||||+|+..+
T Consensus 536 LaGMTGTA~te~~Ef~~iY~L~Vv~I---PTnrP~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 536 LAGMTGTAETEASEFFEIYKLDVVVI---PTNKPIVRKDMDD-LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hcccCCCChhHHHHHHHHhCCcEEEC---CCCCCcceecCCC-eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 44578888777777776664332222 1111111111111 2233445688888777754 34578999999999999
Q ss_pred HHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC---ccc-----eEEecCCCCChhHHH
Q 017020 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETFV 172 (379)
Q Consensus 102 ~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip---~v~-----~VI~~~~P~~~~~yi 172 (379)
+.++..|.. ++++..||+ .|.+|+..+..|+.+...|+||||+|+||+||+ +|. +||+++.|.+...|.
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~ 689 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDR 689 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHH
Confidence 999999985 899999997 599999999999999999999999999999998 554 459999999999999
Q ss_pred HHHhhccCCCCCceEEEEeChhhH
Q 017020 173 HRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 173 qR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
||+|||||+|.+|.+++|++..|.
T Consensus 690 Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 690 QLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHhhhhhcCCCCcceEEEechhHH
Confidence 999999999999999999998764
No 78
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.3e-17 Score=174.93 Aligned_cols=236 Identities=19% Similarity=0.313 Sum_probs=179.7
Q ss_pred HHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-cc-HHHHHHHHHHHH--c
Q 017020 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TS-KRTILSDLITVY--A 86 (379)
Q Consensus 11 ~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~-k~~~L~~ll~~~--~ 86 (379)
..++...+++-.+|++|||+. .+++++ |+.++..+.+.+.. -.++.+|..... .. -.+.+...+..+ .
T Consensus 186 k~~~~~rr~DLKiIimSATld--~~rfs~-~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~ 257 (845)
T COG1643 186 KDLLARRRDDLKLIIMSATLD--AERFSA-YFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLRE 257 (845)
T ss_pred HHHHhhcCCCceEEEEecccC--HHHHHH-HcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhccC
Confidence 345677777899999999995 445554 66766667665432 334555543332 23 334444555443 3
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
..+.+|||.+..++.+.+++.|.+ ...+.++||.|+.+++.++++.-..|..+|++||++|+.+|.||+|.+||+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 468999999999999999999975 366899999999999999999999898889999999999999999999997
Q ss_pred cCC------------------CCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHH
Q 017020 162 YEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (379)
Q Consensus 162 ~~~------------------P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~ 223 (379)
-+. |.+..+..||.||+||.+ +|.||-+|+..+.. ..+.-+..||+.
T Consensus 338 sG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~--------------~~~~~t~PEIlr 402 (845)
T COG1643 338 SGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL--------------AFPEFTLPEILR 402 (845)
T ss_pred CCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH--------------hcccCCChhhhh
Confidence 553 557889999999999996 99999999996642 112334568999
Q ss_pred HHHHHHHHHHcccCcc-chhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCCC
Q 017020 224 SSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274 (379)
Q Consensus 224 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~~ 274 (379)
..+..++..++++... +...| .+++.++..++.+|+..+...+...
T Consensus 403 tdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LGAld 449 (845)
T COG1643 403 TDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQELGALD 449 (845)
T ss_pred cchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHHcCCcC
Confidence 9999999999998763 55555 5677888888888887776554443
No 79
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.74 E-value=3.4e-18 Score=131.20 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.6
Q ss_pred HHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCC
Q 017020 107 ALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (379)
Q Consensus 107 ~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G 182 (379)
.|+ .++.+..+||++++.+|+.+++.|+++...+||||+++++|+|+|++++||++++|.++..|.|++||+||.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 354 3899999999999999999999999999999999999999999999999999999999999999999999986
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.74 E-value=4.2e-18 Score=163.92 Aligned_cols=180 Identities=22% Similarity=0.349 Sum_probs=141.1
Q ss_pred CCCcEEEEeeeCChHHHHHHH--HhcCCCceEEeecccccccccceEEEEEE-c--CCccHHHHHHHHHHH-Hc------
Q 017020 19 PKRQSMLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIS-T--TATSKRTILSDLITV-YA------ 86 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~--~~l~~p~~i~~~~~~~~~~~~~i~~~~~~-~--~~~~k~~~L~~ll~~-~~------ 86 (379)
++...+.++||.++++++-+- ..+++|+.+--.+. -..|+ +|-. . .-++-...|.++... ++
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~----FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT----FRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc----hhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 478899999999998887443 44568876622111 01111 1100 0 012333344443321 11
Q ss_pred -----CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE
Q 017020 87 -----KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (379)
Q Consensus 87 -----~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 160 (379)
..+-.||||.|+++|+.++-.|.. |+++.++|.|+...+|..+.++|-+++..|++||..+++|+|-|+|..||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 124679999999999999999985 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHH
Q 017020 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (379)
Q Consensus 161 ~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~ 204 (379)
|+++|.+...|.|.+||+||.|+...|-++|+.++...+..|-+
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999888877643
No 81
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=164.46 Aligned_cols=175 Identities=23% Similarity=0.343 Sum_probs=135.2
Q ss_pred HHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHH-------c
Q 017020 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-------A 86 (379)
Q Consensus 14 l~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-------~ 86 (379)
|+.+-++.|+|.+|||+.. -.++++++--+++.. . .+..+--.|..++....+|.+.+..+.+.. +
T Consensus 366 Lr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y--~----~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLY--D----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEee--c----CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 3444568999999999943 356676654444332 1 111122244555555778999988888653 2
Q ss_pred CCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe---c
Q 017020 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---Y 162 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~---~ 162 (379)
-.+++|||++|++.|++++..|. +++.+.++|+||+..+|..+...|.++++.++|+|-.++.|+|+|.-.+|.. .
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 24799999999999999999998 4999999999999999999999999999999999999999999997664431 2
Q ss_pred CCC-CChhHHHHHHhhccCCC--CCceEEEEeChhh
Q 017020 163 ELP-NDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (379)
Q Consensus 163 ~~P-~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e 195 (379)
+.- -++.+|.|+.||+||.+ ..|.+|+++.+..
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 222 38999999999999988 5699999987743
No 82
>PRK13766 Hef nuclease; Provisional
Probab=99.71 E-value=5.4e-17 Score=175.15 Aligned_cols=122 Identities=35% Similarity=0.558 Sum_probs=109.8
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCC--------CCHHHHHHHHhcccCCcee
Q 017020 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~--------m~~~~R~~~~~~F~~g~~~ 139 (379)
..|.+.|.+++... .++.++||||++++.|+.++..|.. ++.+..+||. |++.+|..++++|++|+.+
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 45778888888654 3568999999999999999999964 7888899886 9999999999999999999
Q ss_pred EEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChh
Q 017020 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (379)
Q Consensus 140 iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~ 194 (379)
+||||+++++|+|+|++++||+||+|.++..|+||+||+||.| .|.+++++...
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCC
Confidence 9999999999999999999999999999999999999999987 58888888653
No 83
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.70 E-value=3.3e-16 Score=158.65 Aligned_cols=231 Identities=20% Similarity=0.344 Sum_probs=173.6
Q ss_pred HHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH-HHHHHHHHH--cCCC
Q 017020 13 ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGG 89 (379)
Q Consensus 13 Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~~~~ 89 (379)
|++.- ++-.+|++|||+. ...+ +.|+.+...+.+.+. .-.++.+|...+..+-.+ .+.-+++.+ .+++
T Consensus 189 i~~~R-~~LklIimSATld--a~kf-S~yF~~a~i~~i~GR-----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~G 259 (674)
T KOG0922|consen 189 ILKKR-PDLKLIIMSATLD--AEKF-SEYFNNAPILTIPGR-----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPG 259 (674)
T ss_pred HHhcC-CCceEEEEeeeec--HHHH-HHHhcCCceEeecCC-----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCC
Confidence 34433 3578999999995 3344 457777666666543 234566666655555443 333333333 4567
Q ss_pred cEEEEecccccHHHHHHHHhcC---C------cEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE
Q 017020 90 KTIVFTQTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~~~---~------~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 160 (379)
-+|||.+..++.+.+++.|.+. . -+.++||.||.+++.++++.-..|..+|++||++|+..+.||++.+||
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVV 339 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVV 339 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEE
Confidence 9999999999999999998741 1 246899999999999999999999999999999999999999999999
Q ss_pred ecC------------------CCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHH
Q 017020 161 HYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (379)
Q Consensus 161 ~~~------------------~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~ 222 (379)
+.+ .|-|..+-.||.||+||.| .|.||-+|+..+. +.....+..+|.
T Consensus 340 DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~--------------~~~~~~~~PEI~ 404 (674)
T KOG0922|consen 340 DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY--------------DKMPLQTVPEIQ 404 (674)
T ss_pred cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH--------------hhcccCCCCcee
Confidence 655 3668889999999999997 9999999999774 222344456777
Q ss_pred HHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCC
Q 017020 223 ESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (379)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~ 272 (379)
...+..++..++.+..+++-.| .+++.+.++.+.+||..+.....
T Consensus 405 R~~Ls~~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lga 449 (674)
T KOG0922|consen 405 RVNLSSAVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSLGA 449 (674)
T ss_pred eechHHHHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcCc
Confidence 7888888888888776655555 56778888999999988864443
No 84
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.69 E-value=3e-16 Score=166.74 Aligned_cols=182 Identities=23% Similarity=0.379 Sum_probs=130.8
Q ss_pred HHHHHHhCC---CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCc-------cHHHHHH
Q 017020 10 VELILENLP---PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-------SKRTILS 79 (379)
Q Consensus 10 i~~Il~~~p---~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-------~k~~~L~ 79 (379)
++.|+..+. ...|++.+|||+|. ..+++.+.-.++..-..-..+........... +..... .....+.
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~-~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAF-LGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEE-EEecCccccccccchHHHHH
Confidence 344555443 34799999999976 67778765545542222111111111111222 222211 2345556
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc---C-C----------------------------------cEEEeeCCC
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS---I-I----------------------------------ASEALHGDI 121 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~-~----------------------------------~v~~lhg~m 121 (379)
.++.....++++||||+|++.+...+..+.. + + .+..+|++|
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 6666777789999999999999999988872 1 0 356799999
Q ss_pred CHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE----ecC-----CCCChhHHHHHHhhccCCC--CCceEEEE
Q 017020 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (379)
Q Consensus 122 ~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----~~~-----~P~~~~~yiqR~GRtgR~G--~~g~~i~l 190 (379)
+.++|..+.+.|+.|.++|||||+.+|+|+|.|.-.+|| -|+ .+.++-+|+|+.|||||.| ..|.++++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL 404 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEE
Confidence 999999999999999999999999999999999888877 466 5678999999999999999 56788887
Q ss_pred eCh
Q 017020 191 FTS 193 (379)
Q Consensus 191 ~~~ 193 (379)
.+.
T Consensus 405 ~~~ 407 (766)
T COG1204 405 ATS 407 (766)
T ss_pred ecC
Confidence 743
No 85
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.2e-16 Score=167.49 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCC-ceeEEEeccccccC
Q 017020 73 SKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (379)
Q Consensus 73 ~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g-~~~iLVaTdv~~rG 150 (379)
.|..++..++..+ ..+.++||||++...++.++..| .+..+||++++.+|++++++|++| .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 4666777777665 35689999999999988888877 356799999999999999999875 88999999999999
Q ss_pred CCCCccceEEecCCC-CChhHHHHHHhhccCCCCCceE-------EEEeChhhH
Q 017020 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAGKEGTA-------ILMFTSSQR 196 (379)
Q Consensus 151 iDip~v~~VI~~~~P-~~~~~yiqR~GRtgR~G~~g~~-------i~l~~~~e~ 196 (379)
+|+|++++||+++.| .+...|+||+||++|.+..|.+ |.|+++...
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 999999999999998 4999999999999999877665 778876543
No 86
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=4.5e-16 Score=156.69 Aligned_cols=231 Identities=19% Similarity=0.306 Sum_probs=174.9
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHH--cCCCcEEEEe
Q 017020 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--AKGGKTIVFT 95 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~--~~~~~~IIF~ 95 (379)
++-..++.||||. .+++.. |+.+...+.+.+. .-.+..+|-..+..+-.++. ..+++.+ .+.+-+|||.
T Consensus 409 pdLKllIsSAT~D--AekFS~-fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFl 480 (902)
T KOG0923|consen 409 PDLKLLISSATMD--AEKFSA-FFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFL 480 (902)
T ss_pred CcceEEeeccccC--HHHHHH-hccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEe
Confidence 6789999999995 345554 6666555555433 23456677777776666543 3344333 4568899999
Q ss_pred cccccHHHHHHHHhc----------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecC--
Q 017020 96 QTKRDADEVSLALTS----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-- 163 (379)
Q Consensus 96 ~t~~~~~~l~~~L~~----------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~-- 163 (379)
...++.+...+.|.. .+-++++|+.||+..+.++++.--.|..+|++||++|+..+.|++|.+||+-+
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~ 560 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFV 560 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccc
Confidence 998888877766642 24688999999999999999999999999999999999999999999999644
Q ss_pred ----------------CCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHH
Q 017020 164 ----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227 (379)
Q Consensus 164 ----------------~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~ 227 (379)
.|.+..+-.||.||+||.| +|.|+-+|+... +.+.+|.. . ..+|.+..+.
T Consensus 561 K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a--Y~~eLE~~--------t---~PEIqRtnL~ 626 (902)
T KOG0923|consen 561 KQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA--YEHELEEM--------T---VPEIQRTNLG 626 (902)
T ss_pred cccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh--hhhhhccC--------C---Ccceeeccch
Confidence 3668888999999999998 999999999733 33444322 2 2345666677
Q ss_pred HHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCC
Q 017020 228 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSS 276 (379)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~~~~ 276 (379)
.++..++++...++-.| .+++.++.+.+..||..|.+++.....
T Consensus 627 nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~ 670 (902)
T KOG0923|consen 627 NVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHL 670 (902)
T ss_pred hHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccc
Confidence 78888888877776666 678888999999999999877766543
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.67 E-value=1.3e-15 Score=163.64 Aligned_cols=106 Identities=25% Similarity=0.452 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcC----CcEEEeeCCCCHHHH----HHHHhcc-cCCc---eeEEE
Q 017020 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVLV 142 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~----~~v~~lhg~m~~~~R----~~~~~~F-~~g~---~~iLV 142 (379)
..++..+++....+++++|||||++.|+++++.|... ..+..+||.+++.+| +++++.| ++|+ ..|||
T Consensus 547 ~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 547 LTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 4556666666556789999999999999999999852 579999999999999 4678888 6665 47999
Q ss_pred eccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCC
Q 017020 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (379)
Q Consensus 143 aTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~ 183 (379)
||+++++|+|| +++++|....| .+.|+||+||+||.++
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999999 68999998888 6899999999999885
No 88
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.66 E-value=6.6e-16 Score=159.81 Aligned_cols=125 Identities=32% Similarity=0.519 Sum_probs=106.8
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc----CCcEEEee--------CCCCHHHHHHHHhcccCC
Q 017020 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lh--------g~m~~~~R~~~~~~F~~g 136 (379)
..|.+.+.+++..+ .+..++||||.++..|..+..+|.. ++.+..+- .+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 56788777777544 4567999999999999999999873 33333333 389999999999999999
Q ss_pred ceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHH
Q 017020 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 198 (379)
Q Consensus 137 ~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~ 198 (379)
++++||||+++++|+||+++++||-||.-.++-..+||.|| ||+ +.|.++++++..+...
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIE 533 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHH
Confidence 99999999999999999999999999999999999999999 998 5899999998655433
No 89
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.63 E-value=3.2e-15 Score=142.32 Aligned_cols=191 Identities=21% Similarity=0.323 Sum_probs=150.0
Q ss_pred hHHHHH--HHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHH
Q 017020 6 FEEDVE--LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (379)
Q Consensus 6 F~~di~--~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (379)
|+.|-. .||+.--++..++.++||.+..+.+-++..+.-...+.+.. .-..+++.+.... .+..-.+.+.++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a---~fnr~nl~yev~q-kp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA---GFNRPNLKYEVRQ-KPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec---ccCCCCceeEeee-CCCChHHHHHHHHH
Confidence 444433 46666667899999999999998888877765333333321 1112444433333 33344445555554
Q ss_pred HH---cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 84 ~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.. -.+...||||-+.++++.++..|.+ ++.+..+|..|.+.+|..+-+.|-.|++.|+|||-..+.|||-|+|++|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 43 2366889999999999999999986 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHH-------------------------------------------HHhhccCCCCCceEEEEeChhhH
Q 017020 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 160 I~~~~P~~~~~yiq-------------------------------------------R~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
||..+|.+.+.|.| ..||+||.+.+..|+++|.-.+.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999987665
Q ss_pred HHHH
Q 017020 197 RTVR 200 (379)
Q Consensus 197 ~~l~ 200 (379)
....
T Consensus 470 fk~s 473 (695)
T KOG0353|consen 470 FKIS 473 (695)
T ss_pred HhHH
Confidence 4443
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.62 E-value=1.8e-14 Score=147.43 Aligned_cols=170 Identities=19% Similarity=0.268 Sum_probs=130.5
Q ss_pred CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccc
Q 017020 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (379)
Q Consensus 20 ~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~ 99 (379)
.+-.++||||.-+....+..-.--+-..|+- ...-...|.-+.+ +.+.+.+++..+-.....+.++.+.|+-.+
T Consensus 411 ~Ph~LvMTATPIPRTLAlt~fgDldvS~IdE----lP~GRkpI~T~~i--~~~~~~~v~e~i~~ei~~GrQaY~VcPLIe 484 (677)
T COG1200 411 NPHVLVMTATPIPRTLALTAFGDLDVSIIDE----LPPGRKPITTVVI--PHERRPEVYERIREEIAKGRQAYVVCPLIE 484 (677)
T ss_pred CCcEEEEeCCCchHHHHHHHhccccchhhcc----CCCCCCceEEEEe--ccccHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 6789999999866665555322112222321 1111233444444 346677777777777777899999998665
Q ss_pred cH--------HHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCC-CC
Q 017020 100 DA--------DEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-ND 167 (379)
Q Consensus 100 ~~--------~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P-~~ 167 (379)
+. .++++.|.. ++.+..+||.|++.+++++|++|++|+++|||||.|.+.|||+|+.++.|..+.- ..
T Consensus 485 ESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFG 564 (677)
T COG1200 485 ESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFG 564 (677)
T ss_pred ccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhh
Confidence 44 456666664 4679999999999999999999999999999999999999999999998877754 36
Q ss_pred hhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 168 PETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 168 ~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
.....|-.||.||.+..+.|++++.+..
T Consensus 565 LaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 565 LAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 8899999999999999999999998876
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=1.5e-14 Score=148.34 Aligned_cols=95 Identities=26% Similarity=0.430 Sum_probs=79.0
Q ss_pred HHHHHHHHhc---CCcEEEeeCCCCHHHH--HHHHhcccCCceeEEEeccccccCCCCCccceEE--ecCC----CC---
Q 017020 101 ADEVSLALTS---IIASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 166 (379)
Q Consensus 101 ~~~l~~~L~~---~~~v~~lhg~m~~~~R--~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI--~~~~----P~--- 166 (379)
++.+.+.|.+ +.++..+|+++++..+ +.++++|++|+.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 5777777775 4678999999988766 8999999999999999999999999999999875 6664 32
Q ss_pred ---ChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 167 ---DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 167 ---~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
....|+|++||+||.++.|.+++.....+
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 24678999999999999999986554433
No 92
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.61 E-value=1.9e-15 Score=115.67 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.6
Q ss_pred HHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCC
Q 017020 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (379)
Q Consensus 103 ~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~ 181 (379)
.++..|.. ++.+..+||+|++.+|..+++.|+++...+||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 35566654 78899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 017020 182 G 182 (379)
Q Consensus 182 G 182 (379)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 93
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.59 E-value=4e-14 Score=150.12 Aligned_cols=103 Identities=23% Similarity=0.377 Sum_probs=83.3
Q ss_pred cHHHHHHHHhc---CCcEEEeeCCCCH--HHHHHHHhcccCCceeEEEeccccccCCCCCccceEE--ecCCCCCh----
Q 017020 100 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPNDP---- 168 (379)
Q Consensus 100 ~~~~l~~~L~~---~~~v~~lhg~m~~--~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI--~~~~P~~~---- 168 (379)
.++.+++.|.. +.++..+|+++++ .++++++++|++|+.+|||+|+++++|+|+|++++|+ +.|.+.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 45567777765 5678999999975 5789999999999999999999999999999999985 55555433
Q ss_pred ------hHHHHHHhhccCCCCCceEEEEeChhhHHHHHHH
Q 017020 169 ------ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 169 ------~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~l 202 (379)
..|+|++||+||.++.|.+++.....+...++.+
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 5789999999999999999987665554444433
No 94
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=3.8e-14 Score=143.29 Aligned_cols=228 Identities=19% Similarity=0.289 Sum_probs=165.5
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH-HHHHHHHHH--cCCCcEEEEe
Q 017020 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~~~~~~IIF~ 95 (379)
.+..+|..|||| +..+++. |+.+...+.+.+.. -.++..|...+.++-.+ ++...+..+ ...+.+|||.
T Consensus 499 rdlKliVtSATm--~a~kf~n-fFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATM--DAQKFSN-FFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeeccc--cHHHHHH-HhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 477899999999 4556665 55555445554321 23455555555555443 334444333 3457899999
Q ss_pred cccccHHHHHHHHhc-----------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecC-
Q 017020 96 QTKRDADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (379)
Q Consensus 96 ~t~~~~~~l~~~L~~-----------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~- 163 (379)
...+.++-.+..+.. .+.+.++++.||+.-+.++++.--.|..+++|||++|+..+.||++.+||+.+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 998887766555431 35789999999999999999999999999999999999999999999999755
Q ss_pred -----------------CCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHH
Q 017020 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (379)
Q Consensus 164 -----------------~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~ 226 (379)
.|.+...-.||.||+||.| .|.||-+|+.... ....-+.+..+|.+...
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay-------------~~eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY-------------KNEMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH-------------HhhcccCCCchhhhcch
Confidence 3667788899999999997 9999999998542 11122344567888888
Q ss_pred HHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcCCCCC
Q 017020 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (379)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~~~~~ 273 (379)
.++...++++..+++..| .+++.+..+.+.+++-.|.-++..
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~LGAl 758 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTLGAL 758 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHhhcc
Confidence 888888888877665555 455566667788888777544433
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=3.8e-13 Score=142.81 Aligned_cols=168 Identities=18% Similarity=0.159 Sum_probs=126.0
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHH-HHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD-LITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+-.||.|...+..++.+-|--+-+.| +...........-. +......|..++.. +...+..+.|+||||+|++.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~Vv~I---Ptnkp~~R~d~~d~-v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLEVVVI---PTNRSMIRKDEADL-VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCCEEEC---CCCCCcceecCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 345688898877777777774332222 21111111111111 22333456655544 44555678999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCc------------------------
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN------------------------ 155 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~------------------------ 155 (379)
++.++..|.. ++++..|||++.+.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 9999999985 899999999999999999999999995 9999999999999841
Q ss_pred --------------cceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 156 --------------VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 156 --------------v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
-=|||--..+.+..-=-|-.||+||.|.+|.+-.|++-.|
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1268877788888888899999999999999999988655
No 96
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.51 E-value=3.9e-13 Score=144.92 Aligned_cols=189 Identities=20% Similarity=0.354 Sum_probs=140.1
Q ss_pred HhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcC---------CccHHHHHHHHHHHH
Q 017020 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSDLITVY 85 (379)
Q Consensus 15 ~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~L~~ll~~~ 85 (379)
...+.+.|+|..|||+.. ..++++.+.+.+....+. ....+....++....+ ..++...+..+....
T Consensus 227 ~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~ 302 (851)
T COG1205 227 RRYGSPLQIICTSATLAN-PGEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALL 302 (851)
T ss_pred hccCCCceEEEEeccccC-hHHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHH
Confidence 334568999999999954 456677777655544332 2223344444544444 124444455555433
Q ss_pred -cCCCcEEEEecccccHHHHHHHH----h-cC----CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCc
Q 017020 86 -AKGGKTIVFTQTKRDADEVSLAL----T-SI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (379)
Q Consensus 86 -~~~~~~IIF~~t~~~~~~l~~~L----~-~~----~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~ 155 (379)
..+-++|+|+.++..++.++... . .+ ..+..+||+|...+|.++...|++|+..++++|+.+.-|+||.+
T Consensus 303 ~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ 382 (851)
T COG1205 303 VRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGS 382 (851)
T ss_pred HHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehh
Confidence 35779999999999999986332 2 23 46889999999999999999999999999999999999999999
Q ss_pred cceEEecCCCC-ChhHHHHHHhhccCCCCCceEEEEeCh--hhHHHHHHHHHHhC
Q 017020 156 VDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTS--SQRRTVRSLERDVG 207 (379)
Q Consensus 156 v~~VI~~~~P~-~~~~yiqR~GRtgR~G~~g~~i~l~~~--~e~~~l~~le~~~~ 207 (379)
++.||+++.|. +..+++||.||+||.++.+..+.++.. -+..++..-+....
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 99999999999 899999999999999977777776653 34555555555554
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.2e-13 Score=144.22 Aligned_cols=168 Identities=20% Similarity=0.173 Sum_probs=129.5
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH-HcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|...+..++.+-|--+-+.| +...........- .+.....+|..++...+.. +..+.|+||||+|+..
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~vv~I---Ptnkp~~r~d~~d-~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDVVVI---PTNRPMIRIDHPD-LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCEEEc---CCCCCeeeeeCCC-eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 455689999887777777774332222 1111111111111 2223445688887777754 3467899999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCcc-----------------------
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV----------------------- 156 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v----------------------- 156 (379)
++.++..|.. ++++..+||. +.+|+..+.+|+.+...|+||||+|+||+||+--
T Consensus 443 se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~ 520 (830)
T PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIK 520 (830)
T ss_pred HHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHH
Confidence 9999999985 8999999996 8899999999999999999999999999999642
Q ss_pred ---------------ceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 157 ---------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 157 ---------------~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
=|||--..|.+..---|-.||+||.|.+|.+-.|++-.|
T Consensus 521 ~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 521 AEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888899999999999999999999999999988655
No 98
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.48 E-value=3.4e-13 Score=141.29 Aligned_cols=116 Identities=29% Similarity=0.499 Sum_probs=98.4
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCC---------------------------------------cEEEeeCCCCHHHHH
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSII---------------------------------------ASEALHGDISQHQRE 127 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~---------------------------------------~v~~lhg~m~~~~R~ 127 (379)
.+.++||||++++.|+.++..+...+ .+.++|+|++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 34579999999999999886654211 467899999999999
Q ss_pred HHHhcccCCceeEEEeccccccCCCCCccceEEec---CC-CCChhHHHHHHhhccCCC--CCceEEEEeChhhHHHHHH
Q 017020 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---EL-PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (379)
Q Consensus 128 ~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~---~~-P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e~~~l~~ 201 (379)
.+...|++|.+.|++||+.++.|++.|...++|-. +. +.+.-.|.||+|||||+| ..|.+++++.+.|......
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 99999999999999999999999999999988843 33 347789999999999998 5699999999999766654
Q ss_pred H
Q 017020 202 L 202 (379)
Q Consensus 202 l 202 (379)
+
T Consensus 619 l 619 (1008)
T KOG0950|consen 619 L 619 (1008)
T ss_pred H
Confidence 4
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.1e-12 Score=139.04 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=126.1
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+-.||.|...+..++.+-|--+-+.| . ...........-..+ .....|..++ ..+...+..+.++||||+|...
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~Vv~I--P-Tnkp~~R~d~~d~iy-~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLDTVVV--P-TNRPMVRKDMADLVY-LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCCEEEC--C-CCCCccceeCCCcEE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 345688888777777777664332222 1 111111111111122 2224555444 4455556678999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC-------------------------
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip------------------------- 154 (379)
++.++..|.. ++++..+|+++++.+++.+.+.|+.|. |+||||+|+||+||.
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 9999999985 899999999999999999999999998 999999999999985
Q ss_pred ------------ccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhH
Q 017020 155 ------------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (379)
Q Consensus 155 ------------~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~ 196 (379)
+-=|||--..|.|..-=-|-.||+||.|.+|.+-.|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 112788888888888888999999999999999999987653
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.47 E-value=1.8e-12 Score=122.61 Aligned_cols=179 Identities=19% Similarity=0.287 Sum_probs=125.3
Q ss_pred CCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH------HHHHHHHH-HcCCCc
Q 017020 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLITV-YAKGGK 90 (379)
Q Consensus 18 p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~L~~ll~~-~~~~~~ 90 (379)
.++.-+|.+|||.|++.++-+... +-..+.+. ...+..+-.+..+....++..+.. .|...|+. ...+.+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp-~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLP-ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecc-hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 356789999999988766544322 22223322 223333333444444444433331 34455544 345789
Q ss_pred EEEEecccccHHHHHHHHhcC---CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEE-ecCCC-
Q 017020 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII-HYELP- 165 (379)
Q Consensus 91 ~IIF~~t~~~~~~l~~~L~~~---~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI-~~~~P- 165 (379)
++||+++....+.++..|... ......|+. ...|.+-.++||+|++++||+|.+++||+.+|+|+++| ...-+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999653 356788887 56788999999999999999999999999999999755 33322
Q ss_pred CChhHHHHHHhhccCCC--CCceEEEEeChhhHHHHHH
Q 017020 166 NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (379)
Q Consensus 166 ~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e~~~l~~ 201 (379)
.+.++.+|.+||+||.- .+|..+.|-......+.+.
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A 423 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQA 423 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHH
Confidence 57899999999999965 4688888766655554443
No 101
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.46 E-value=2e-12 Score=137.58 Aligned_cols=233 Identities=18% Similarity=0.262 Sum_probs=165.2
Q ss_pred CCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeeccccccc--------------ccceEEEE-----------E-EcC
Q 017020 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL--------------AEGIKLYA-----------I-STT 70 (379)
Q Consensus 17 ~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~--------------~~~i~~~~-----------~-~~~ 70 (379)
..++-++||||||+. .+..+.|+.....+.+.+...... .....++. + ...
T Consensus 316 ~~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (924)
T KOG0920|consen 316 RNPDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWE 392 (924)
T ss_pred hCCCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcc
Confidence 346899999999996 345556777666665543221100 00001110 0 000
Q ss_pred CccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc--------CCcEEEeeCCCCHHHHHHHHhcccCCcee
Q 017020 71 ATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~--------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~ 139 (379)
.+-..+++..++... ...+.+|||.++..+...+.+.|.. .+-+.++|+.|+..+++.++..--.|..+
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 112345566666554 3367899999999999999999862 25678899999999999999999999999
Q ss_pred EEEeccccccCCCCCccceEEecC--------CCC----------ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHH
Q 017020 140 VLVATDVAARGLDIPNVDLIIHYE--------LPN----------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (379)
Q Consensus 140 iLVaTdv~~rGiDip~v~~VI~~~--------~P~----------~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~ 201 (379)
|++||++|+.+|.|++|-+||+.+ +-. +...-.||.||+||. .+|.||-+|+......+-
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~- 550 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLM- 550 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcc-
Confidence 999999999999999999999644 322 445568999999998 599999999986542221
Q ss_pred HHHHhCCCceeeCCCCHHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHHcC
Q 017020 202 LERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269 (379)
Q Consensus 202 le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~~~ 269 (379)
..-+..|+++..++++.-.++-+....+. +...++++.+...++..|+..+..
T Consensus 551 ------------~~~q~PEilR~pL~~l~L~iK~l~~~~~~---~fLskaldpP~~~~v~~a~~~L~~ 603 (924)
T KOG0920|consen 551 ------------LAYQLPEILRTPLEELCLHIKVLEQGSIK---AFLSKALDPPPADAVDLAIERLKQ 603 (924)
T ss_pred ------------cccCChHHHhChHHHhhheeeeccCCCHH---HHHHHhcCCCChHHHHHHHHHHHH
Confidence 11234578888888888888866655555 555578888888888777776643
No 102
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.5e-12 Score=127.67 Aligned_cols=170 Identities=25% Similarity=0.342 Sum_probs=130.3
Q ss_pred CCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccc
Q 017020 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (379)
Q Consensus 20 ~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~ 99 (379)
..|++.+|||..++-.+.+. + ..++-+-.+.....+.+ .+.....+-.+++.++-.....+.+++|-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~----~-~vveQiIRPTGLlDP~i---evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG----G-NVVEQIIRPTGLLDPEI---EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc----C-ceeEEeecCCCCCCCce---eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999998765444332 1 12221111111112222 2233344556666676665667899999999999
Q ss_pred cHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecC-----CCCChhHHHH
Q 017020 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (379)
Q Consensus 100 ~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~-----~P~~~~~yiq 173 (379)
.|+.|.++|.. ++.+..+|+++..-+|.+++.++|.|.++|||.-+.+-.|+|+|.|++|...| +..+..+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999985 99999999999999999999999999999999999999999999999998777 4568999999
Q ss_pred HHhhccCCCCCceEEEEeChhhHHH
Q 017020 174 RSGRTGRAGKEGTAILMFTSSQRRT 198 (379)
Q Consensus 174 R~GRtgR~G~~g~~i~l~~~~e~~~ 198 (379)
-+||++|- -.|.++++.+.-...+
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHHH
Confidence 99999996 4899999877544333
No 103
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.45 E-value=1.4e-12 Score=136.29 Aligned_cols=106 Identities=28% Similarity=0.399 Sum_probs=91.3
Q ss_pred CcEEEEecccccHHHHHHHHhc-CC---------------------------------------cEEEeeCCCCHHHHHH
Q 017020 89 GKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQRER 128 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-~~---------------------------------------~v~~lhg~m~~~~R~~ 128 (379)
-|+||||=+++.|++.++.|.. .+ .++++|||+-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 4899999999999999999874 21 3678999999999999
Q ss_pred HHhcccCCceeEEEeccccccCCCCCccceEEecC--------CCCChhHHHHHHhhccCCC--CCceEEEEeChh
Q 017020 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (379)
Q Consensus 129 ~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~--------~P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~ 194 (379)
+..-|..|-++||+||..+|+|+|.|.-.+|+.-= .--.+.+|.|++||+||-| .+|+++++....
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 99999999999999999999999999888887321 1236889999999999998 779998887654
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.43 E-value=1.6e-12 Score=139.83 Aligned_cols=186 Identities=18% Similarity=0.280 Sum_probs=142.0
Q ss_pred HHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcE
Q 017020 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (379)
Q Consensus 12 ~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 91 (379)
+-|+.+..+.-++-+|||.-+....++-..+++-..|...+. . .-.++-|+... +..-+=..++..+..++++
T Consensus 734 EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~--~--R~pV~T~V~~~---d~~~ireAI~REl~RgGQv 806 (1139)
T COG1197 734 EKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE--D--RLPVKTFVSEY---DDLLIREAILRELLRGGQV 806 (1139)
T ss_pred HHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC--C--CcceEEEEecC---ChHHHHHHHHHHHhcCCEE
Confidence 445666678899999999877888888777777776654321 1 12233333322 2222223444555678999
Q ss_pred EEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC-CCC
Q 017020 92 IVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-PND 167 (379)
Q Consensus 92 IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~-P~~ 167 (379)
-.-+|..+..+.++..|+. ...+...||.|+..+-+.+|.+|-+|+.+|||||.+.+.|||||+++.+|..+. -..
T Consensus 807 fYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fG 886 (1139)
T COG1197 807 FYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFG 886 (1139)
T ss_pred EEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecccccc
Confidence 8889999999999999986 456899999999999999999999999999999999999999999998774443 246
Q ss_pred hhHHHHHHhhccCCCCCceEEEEeChhh------HHHHHHHHH
Q 017020 168 PETFVHRSGRTGRAGKEGTAILMFTSSQ------RRTVRSLER 204 (379)
Q Consensus 168 ~~~yiqR~GRtgR~G~~g~~i~l~~~~e------~~~l~~le~ 204 (379)
.+...|-.||.||..+.+.||+++.+.. .+.++.|+.
T Consensus 887 LsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 887 LAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred HHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 8899999999999999999999998532 345555544
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.42 E-value=1.3e-12 Score=139.90 Aligned_cols=174 Identities=22% Similarity=0.273 Sum_probs=122.1
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeeccccccc-ccceEEEEEEcCCccH--HHHHHHHHHHHcCCCcEEEEe
Q 017020 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL-AEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFT 95 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~-~~~i~~~~~~~~~~~k--~~~L~~ll~~~~~~~~~IIF~ 95 (379)
.+..++++|||+|+...+....++.+...+.......... ...+.... .....+. .............+.+++|-|
T Consensus 369 ~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~ 447 (733)
T COG1203 369 AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEELIELISEEVKEGKKVLVIV 447 (733)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc-chhhhhhhhHhhhhcchhhhccCCcEEEEE
Confidence 3789999999999999998888877655443221100000 01111110 0111111 123333444455678999999
Q ss_pred cccccHHHHHHHHhcCC-cEEEeeCCCCHHHHHHHHhccc----CCceeEEEeccccccCCCCCccceEEecCCCCChhH
Q 017020 96 QTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170 (379)
Q Consensus 96 ~t~~~~~~l~~~L~~~~-~v~~lhg~m~~~~R~~~~~~F~----~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~ 170 (379)
||...|.+++..|+... .+..+||.+...+|.+.++.+. .+...|+|||++.+.|+|+. .+++|-= +..+++
T Consensus 448 NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidS 524 (733)
T COG1203 448 NTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDS 524 (733)
T ss_pred ecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHH
Confidence 99999999999998744 5999999999999988887544 46778999999999999994 6665532 456899
Q ss_pred HHHHHhhccCCC--CCceEEEEeChhhH
Q 017020 171 FVHRSGRTGRAG--KEGTAILMFTSSQR 196 (379)
Q Consensus 171 yiqR~GRtgR~G--~~g~~i~l~~~~e~ 196 (379)
.+||.||++|.| ..|..+++......
T Consensus 525 LIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 525 LIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred HHHHHHHHhhcccccCCceeEeecccCC
Confidence 999999999999 56788877665443
No 106
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.40 E-value=5.5e-12 Score=134.72 Aligned_cols=179 Identities=21% Similarity=0.334 Sum_probs=127.7
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcC-CCceEEeecccccccccceEEEEEEcCCcc--H-HH-----HHHHHHHHHcCCC
Q 017020 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATS--K-RT-----ILSDLITVYAKGG 89 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~--k-~~-----~L~~ll~~~~~~~ 89 (379)
.....+.+|||+|.- .+.+. |++ +|..+-.-+.+- .+..+.|.++-+.... + .. ....++...+ ..
T Consensus 473 e~~RlVGLSATLPNy-~DV~~-Fl~v~~~glf~fd~sy--RpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag-k~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNY-EDVAS-FLRVDPEGLFYFDSSY--RPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAG-KN 547 (1674)
T ss_pred cCceeeeecccCCch-hhhHH-HhccCcccccccCccc--CcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCC-CC
Confidence 467899999999973 33333 333 443332222222 2344566666554432 2 22 2234444444 48
Q ss_pred cEEEEecccccHHHHHHHHhcC--------------------------------------CcEEEeeCCCCHHHHHHHHh
Q 017020 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~~~--------------------------------------~~v~~lhg~m~~~~R~~~~~ 131 (379)
++|||+.+++++-+.|..++.. +..+.+|+||+..+|+.+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999998888776510 14677999999999999999
Q ss_pred cccCCceeEEEeccccccCCCCCccceEE----ecCC------CCChhHHHHHHhhccCCC--CCceEEEEeChhhHHHH
Q 017020 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 199 (379)
Q Consensus 132 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI----~~~~------P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e~~~l 199 (379)
.|++|.+++||+|-.+|+|+|+|.-+++| -||+ +.++.+-.||.||+||.+ ..|..++.-...|..+.
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 99999999999999999999999988888 3553 458899999999999987 55777777777776655
Q ss_pred HHH
Q 017020 200 RSL 202 (379)
Q Consensus 200 ~~l 202 (379)
..+
T Consensus 708 ls~ 710 (1674)
T KOG0951|consen 708 LSL 710 (1674)
T ss_pred HHh
Confidence 544
No 107
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.37 E-value=2.3e-11 Score=128.51 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=125.1
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCc-e-EEeecccccccccceEEEEEEcCCc---cHHH-----HHHHHHHHHcCC
Q 017020 19 PKRQSMLFSATMPSWVKKLSRKYLDNPL-N-IDLVGNQDEKLAEGIKLYAISTTAT---SKRT-----ILSDLITVYAKG 88 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~-~-i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~L~~ll~~~~~~ 88 (379)
...+++.+|||+|. +.+++.+.--||. . ..+.. ... +-.+.+.++-.+.. .... ....+++....+
T Consensus 274 s~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~-~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g 349 (1230)
T KOG0952|consen 274 SMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQ-RYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEG 349 (1230)
T ss_pred hheEEEEeeccCCC-HHHHHHHhcCCCccceeeecc-ccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcC
Confidence 46789999999986 6787874433532 2 22221 111 22334444333322 1111 223445555678
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CC-------------------cEEEeeCCCCHHHHHHHHhcccCCceeEEEec
Q 017020 89 GKTIVFTQTKRDADEVSLALTS-----II-------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~-------------------~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT 144 (379)
.+++|||.++..+-..|+.|.. +. ....+|+||..++|..+.+.|..|.++||+||
T Consensus 350 ~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cT 429 (1230)
T KOG0952|consen 350 HQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCT 429 (1230)
T ss_pred CeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEec
Confidence 9999999999999999988852 11 35678999999999999999999999999999
Q ss_pred cccccCCCCCccceEE----ecCCC------CChhHHHHHHhhccCCC--CCceEEEEeChhhHHHHHHH
Q 017020 145 DVAARGLDIPNVDLII----HYELP------NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 145 dv~~rGiDip~v~~VI----~~~~P------~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~e~~~l~~l 202 (379)
..+++|+++|+--++| -||.- ...-+.+|..||+||.+ ..|.++++.+.+.......+
T Consensus 430 aTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 430 ATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred ceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 9999999999654444 23322 25677899999999976 77999998887665554444
No 108
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.34 E-value=6.4e-11 Score=116.44 Aligned_cols=221 Identities=18% Similarity=0.334 Sum_probs=158.8
Q ss_pred HHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHH--cCCCc
Q 017020 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--AKGGK 90 (379)
Q Consensus 14 l~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~--~~~~~ 90 (379)
+..-| +-.++.+|||+.. .-.+.|+.|+-.+.+.+ ...++.+|...+..+..++. ..+++.+ ...+-
T Consensus 186 ~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GD 255 (699)
T KOG0925|consen 186 VRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGD 255 (699)
T ss_pred HhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCC
Confidence 44444 8899999999832 23456888888777643 13345566666656666544 4444443 34689
Q ss_pred EEEEecccccHHHHHHHHhc----------CCcEEEeeCCCCHHHHHHHHhcccC---C--ceeEEEeccccccCCCCCc
Q 017020 91 TIVFTQTKRDADEVSLALTS----------IIASEALHGDISQHQRERTLNGFRQ---G--KFTVLVATDVAARGLDIPN 155 (379)
Q Consensus 91 ~IIF~~t~~~~~~l~~~L~~----------~~~v~~lhg~m~~~~R~~~~~~F~~---g--~~~iLVaTdv~~rGiDip~ 155 (379)
++||....++.+..++.+.. .+.+.++| +++..++++.-.. | ..+|+|+|++++..+.+++
T Consensus 256 ilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidg 331 (699)
T KOG0925|consen 256 ILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDG 331 (699)
T ss_pred EEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeecc
Confidence 99999999999988888762 14688888 4455555554432 2 3579999999999999999
Q ss_pred cceEEecCC------------------CCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCC
Q 017020 156 VDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (379)
Q Consensus 156 v~~VI~~~~------------------P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~ 217 (379)
|.+||+-++ |.+..+-.||.||+||. +.|.|+.+|+..-. +. ...+.+
T Consensus 332 iv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~~---em~~~t 397 (699)
T KOG0925|consen 332 IVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------EK---EMQPQT 397 (699)
T ss_pred EEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------hh---cCCCCC
Confidence 999997553 66888899999999997 69999999997431 11 123445
Q ss_pred HHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhhCHHHHHHHHHHH
Q 017020 218 VEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQL 267 (379)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~a~al~~~ 267 (379)
..+++++.+..+...++.+..+++.+| .+++.+.++.++.||-.+
T Consensus 398 ypeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~L 442 (699)
T KOG0925|consen 398 YPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVL 442 (699)
T ss_pred cHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHh
Confidence 678999999999999998877766666 566677778777776554
No 109
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.32 E-value=6.1e-12 Score=128.74 Aligned_cols=174 Identities=20% Similarity=0.352 Sum_probs=125.8
Q ss_pred hCCCCCcEEEEeeeCChHHHHHHHHhc---CCCceEEeecccccccccceEEEEEE---------cCCcc--HHHH----
Q 017020 16 NLPPKRQSMLFSATMPSWVKKLSRKYL---DNPLNIDLVGNQDEKLAEGIKLYAIS---------TTATS--KRTI---- 77 (379)
Q Consensus 16 ~~p~~~Q~llfSAT~p~~i~~l~~~~l---~~p~~i~~~~~~~~~~~~~i~~~~~~---------~~~~~--k~~~---- 77 (379)
.+|++...+++|||+|.. .++++|.. +.|.+|-..... +..++||.+. +.... +.+-
T Consensus 262 llP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR----PTPLQHyifP~ggdGlylvVDek~~FrednF~~a 336 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR----PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKA 336 (1041)
T ss_pred eccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC----CCcceeeeecCCCCeeEEEEecccccchHHHHHH
Confidence 478999999999999873 45565543 467777554322 3345665433 21111 1111
Q ss_pred ----------------------------------HHHHHHHH--cCCCcEEEEecccccHHHHHHHHhc-CC--------
Q 017020 78 ----------------------------------LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-------- 112 (379)
Q Consensus 78 ----------------------------------L~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-~~-------- 112 (379)
+..+++.. ....++|||+=++++|+.+|..+.+ .+
T Consensus 337 m~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~ 416 (1041)
T KOG0948|consen 337 MSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKEL 416 (1041)
T ss_pred HHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHH
Confidence 11222221 2345899999999999999988864 11
Q ss_pred -------------------------------cEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEe
Q 017020 113 -------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (379)
Q Consensus 113 -------------------------------~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 161 (379)
.+..+|||+-+--++-+.--|.+|-+++|.||..++.|+|.|.-++|.-
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 3567899999999999999999999999999999999999999887772
Q ss_pred ----cCCC----CChhHHHHHHhhccCCC--CCceEEEEeChh
Q 017020 162 ----YELP----NDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (379)
Q Consensus 162 ----~~~P----~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~ 194 (379)
||-- .+.-.|+|++||+||-| ..|.||++++..
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 3322 26788999999999999 558999988753
No 110
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=99.31 E-value=5.2e-13 Score=101.62 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=52.3
Q ss_pred EEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHHhhhhcccCcceEeeeehhh
Q 017020 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYASVRLGLFNTKSVIWLTYRFR 365 (379)
Q Consensus 287 ~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (379)
+||+++.|+ +|+++|++|+++|++.+|+++++||+|+|+++++ .|+||+..++.++..+++.++++++.+++
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S----~vev~~~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFS----FVEVPEEVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-E----EEEE-TT-HHHHHHHHTT--SSS----EE
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEE----EEEECHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 689999999 9999999999999999999999999999999999 77888888888888888888888777765
No 111
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2e-11 Score=125.69 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=98.3
Q ss_pred EEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCCC--------C----------ChhHHHHHH
Q 017020 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP--------N----------DPETFVHRS 175 (379)
Q Consensus 114 v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P--------~----------~~~~yiqR~ 175 (379)
|.+|++-++.+.+.++++.--.|..-++|||+||+..+.||+|.+||+.+.- . +..+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 5567888999999999999999999999999999999999999999976532 2 344557999
Q ss_pred hhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHHcccCccchhchHHHHHHHHhhh
Q 017020 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEK 255 (379)
Q Consensus 176 GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 255 (379)
||+||.| .|+||-+|+..=. ...|+..+ ..+|++.-++.++..++..+-..+..| .+-..+
T Consensus 687 GRAGRtg-pGHcYRLYSSAVf----------~~~Fe~fS---~PEIlk~Pve~lvLqMKsMnI~kVvnF-----PFPtpP 747 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSAVF----------SNDFEEFS---LPEILKKPVESLVLQMKSMNIDKVVNF-----PFPTPP 747 (1172)
T ss_pred cccCCCC-CCceeehhhhHHh----------hcchhhhc---cHHHhhCcHHHHHHHHHhcCccceecC-----CCCCCc
Confidence 9999998 9999999987432 11233333 347888888888888888765544433 122234
Q ss_pred CHHHHHHHHHHH
Q 017020 256 GTDALAAALAQL 267 (379)
Q Consensus 256 ~~~~~a~al~~~ 267 (379)
+..++-+|.-.|
T Consensus 748 d~~~L~~Aer~L 759 (1172)
T KOG0926|consen 748 DRSALEKAERRL 759 (1172)
T ss_pred cHHHHHHHHHHH
Confidence 445554444444
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.28 E-value=1.9e-11 Score=133.22 Aligned_cols=134 Identities=18% Similarity=0.363 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCC---ceeEEEeccc
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g---~~~iLVaTdv 146 (379)
..|..+|..++... ..+.++|||+......+.|...|. .++....+||+++..+|+.+++.|.+. ..-+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 46888888888665 346799999999999999999887 489999999999999999999999753 3467899999
Q ss_pred cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceE--EEEeChh--hHHHHHHHHHH
Q 017020 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS--QRRTVRSLERD 205 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~--i~l~~~~--e~~~l~~le~~ 205 (379)
++.|||+..+++||+||+|+++..+.|++||+.|.|++..+ |.|++.. |...+....+.
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976544 4455543 44455444333
No 113
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.27 E-value=2.7e-11 Score=122.69 Aligned_cols=103 Identities=32% Similarity=0.524 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCc
Q 017020 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (379)
Q Consensus 77 ~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~ 155 (379)
.+..++..+..+.+++|||.+..+++.++..+.. +. +..+.|+.++.+|+.+++.|+.|.+++||++.++..|+|+|+
T Consensus 272 ~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~ 350 (442)
T COG1061 272 AVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPD 350 (442)
T ss_pred HHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCC
Confidence 3344444332367999999999999999999975 45 899999999999999999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHHhhccC
Q 017020 156 VDLIIHYELPNDPETFVHRSGRTGR 180 (379)
Q Consensus 156 v~~VI~~~~P~~~~~yiqR~GRtgR 180 (379)
++++|......+...|+||+||.-|
T Consensus 351 ~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 351 ADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999
No 114
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.19 E-value=1.4e-09 Score=108.77 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=144.8
Q ss_pred CCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCC---cc------HHHHHHHHH-HHHcCC
Q 017020 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TS------KRTILSDLI-TVYAKG 88 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~------k~~~L~~ll-~~~~~~ 88 (379)
.+.|++-.|||+...++-....+--+. ++++..... +..-+++.++.++ .+ +..-...++ +....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~E--~~Li~~DGS--Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLSE--LELVTIDGS--PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCcc--eEEEEecCC--CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 578999999999777665554333233 333322222 3344666665442 11 111122222 222346
Q ss_pred CcEEEEecccccHHHHHHHHhcC---------CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~~---------~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
-++|-||.+++-|+.+....++- -.+..+.||.+.++|.++....-.|+..-+|||+.++-||||.+.+.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 79999999999998776554321 135678899999999999999999999999999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCCCCCceEEEEe--ChhhHHHHHHHHHHhCCCceeeCC-CCHHHHHHHHHHHHHHHH
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMF--TSSQRRTVRSLERDVGCKFEFVSP-PVVEDVLESSAEQVVATL 233 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~--~~~e~~~l~~le~~~~~~~~~~~~-p~~~~i~~~~~~~~~~~l 233 (379)
++.++|.+...+.|..||+||-.+...++.++ .|-+..+++.-+...+..-.+..+ -+.+-++...++-+.-++
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~EL 682 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALEL 682 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcC
Confidence 99999999999999999999998887766554 466777777766666544333222 233445555555544443
No 115
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.12 E-value=2.7e-10 Score=126.09 Aligned_cols=93 Identities=23% Similarity=0.429 Sum_probs=81.9
Q ss_pred CCcEEEEecccccHHHHHHHHhcC-------C---cEEEeeCCCCHHHHHHHHhcccCCce-eEEEeccccccCCCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTSI-------I---ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~~-------~---~v~~lhg~m~~~~R~~~~~~F~~g~~-~iLVaTdv~~rGiDip~v 156 (379)
++++||||.+++.|+.++..|... + .+..+||+++ ++..++++|+++.. +|+|++|++.+|+|+|.+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999988887531 1 4567999986 46789999999886 699999999999999999
Q ss_pred ceEEecCCCCChhHHHHHHhhccCCC
Q 017020 157 DLIIHYELPNDPETFVHRSGRTGRAG 182 (379)
Q Consensus 157 ~~VI~~~~P~~~~~yiqR~GRtgR~G 182 (379)
++||.+.+|.|...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999953
No 116
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.06 E-value=2.2e-09 Score=115.81 Aligned_cols=106 Identities=25% Similarity=0.402 Sum_probs=88.2
Q ss_pred CCcEEEEecccccHHHHHHHHhc----------C-------------------C-------------cEEEeeCCCCHHH
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS----------I-------------------I-------------ASEALHGDISQHQ 125 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~----------~-------------------~-------------~v~~lhg~m~~~~ 125 (379)
.-++|+|+=+++.|+..+..+.. . + ...++|++|-+..
T Consensus 379 ~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 379 LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 35899999999999988877651 1 0 1346899999999
Q ss_pred HHHHHhcccCCceeEEEeccccccCCCCCccceEE----ecC----CCCChhHHHHHHhhccCCC--CCceEEEEeCh
Q 017020 126 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (379)
Q Consensus 126 R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----~~~----~P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~ 193 (379)
+..+...|..|-.+|++||.+++.|+|.|.-++|+ .+| .+-++..|.|+.||+||.| ..|.+++.-.+
T Consensus 459 K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 99999999999999999999999999999888776 233 3558999999999999999 56888887443
No 117
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=1e-08 Score=108.53 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=115.1
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHH-HHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS-DLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+-.||.|...+-.++.+-|--+-+.| +...........-. +......|..++. ++...+..+.|+||.|.|.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~Vv~I---PTnkP~~R~D~~d~-iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRVNVV---PTNKPVIRKDEPDS-IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCEEEC---CCCCCeeeeeCCCc-EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 345688888777777776664332222 11111111111111 2223345555444 455556678999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCC-ceeEEEeccccccCCCCCccc--------eEEecCCCCChhH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARGLDIPNVD--------LIIHYELPNDPET 170 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g-~~~iLVaTdv~~rGiDip~v~--------~VI~~~~P~~~~~ 170 (379)
++.++..|.. +++...+++. +.+++.-+-. ..| .-.|.|||++|+||.||.--. |||....|.+..-
T Consensus 439 SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 439 SETLHELLLEANIPHTVLNAK--QNAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHCCCCceeeccc--chhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 9999999985 8999999987 3344433333 223 456999999999999995222 8999999999988
Q ss_pred HHHHHhhccCCCCCceEEEEeChhh
Q 017020 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 171 yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
--|-.||+||.|.+|.+-.|++-.|
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecch
Confidence 8899999999999999999888655
No 118
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=3.3e-09 Score=106.11 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=91.6
Q ss_pred CCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccC--CceeEEEeccccccCCCCCccceEEecC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHYE 163 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~--g~~~iLVaTdv~~rGiDip~v~~VI~~~ 163 (379)
++-|||-. +++..-.+...++. +..+++++|++|++.|.+--..|.+ ++.+||||||..++|+|+ +++-||.|+
T Consensus 357 ~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~s 434 (700)
T KOG0953|consen 357 PGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYS 434 (700)
T ss_pred CCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEee
Confidence 46666654 56678888888875 4559999999999999999999988 899999999999999999 788898877
Q ss_pred C---------CCChhHHHHHHhhccCCC---CCceEEEEeChhhHHHHHHHHHHhCCCcee
Q 017020 164 L---------PNDPETFVHRSGRTGRAG---KEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (379)
Q Consensus 164 ~---------P~~~~~yiqR~GRtgR~G---~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (379)
+ |.+.....|-+||+||.| ..|.+.++.. +.+..+.+.+..++++
T Consensus 435 l~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~----eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 435 LIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS----EDLKLLKRILKRPVEP 491 (700)
T ss_pred cccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH----hhHHHHHHHHhCCchH
Confidence 5 457788999999999987 3355555443 3444555555545443
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=2.3e-08 Score=104.52 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=117.8
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+-.||.|...+..++.+-|--+ .+.+ +..............+ .....|..++ .++...+..+.|+||.|.|.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~I-Ptnkp~~R~d~~d~iy-~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVI-PPNKPNIREDEADRVY-ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEEC-CCCCCceeecCCCceE-eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 45678999988888877767433 2222 2211111111111222 2233455544 4455566778999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC---------------ccceEEecCC
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------------NVDLIIHYEL 164 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip---------------~v~~VI~~~~ 164 (379)
.+.++..|.. +++...|++.-...+-+.+-+.=+.| .|-|||+.|+||.||. +==|||--..
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999985 89999998874444433333333333 5899999999999985 2237999999
Q ss_pred CCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 165 P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
|.+..---|-.||+||.|.+|.+-.|++-.|
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999988655
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.2e-07 Score=100.88 Aligned_cols=131 Identities=24% Similarity=0.361 Sum_probs=93.8
Q ss_pred CCCcEEEEeeeCChH-H-HHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHHHcCCCcEEEEec
Q 017020 19 PKRQSMLFSATMPSW-V-KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (379)
Q Consensus 19 ~~~Q~llfSAT~p~~-i-~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~ 96 (379)
+..+.+..|||..+. . ..+.+..++ +++. .......|+...|+.. .-.+.+..+++.++ .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlg----FevG--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLG----FEVG--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhC----CccC--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 456889999998432 2 234444443 1111 1222345666666654 33445566777764 46799999
Q ss_pred c---cccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEec----cccccCCCCCcc-ceEEecCCC
Q 017020 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPNV-DLIIHYELP 165 (379)
Q Consensus 97 t---~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT----dv~~rGiDip~v-~~VI~~~~P 165 (379)
. ++.+++++++|.. |+.+..+|+. .++.++.|..|++++||.. .++.||+|+|.. .++|.|++|
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9 9999999999986 8999999985 3778999999999999875 489999999965 578877766
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.2e-07 Score=100.22 Aligned_cols=194 Identities=18% Similarity=0.314 Sum_probs=120.7
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccH-----HHHHHHH
Q 017020 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDL 81 (379)
Q Consensus 7 ~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~L~~l 81 (379)
..||.-..++. .+.+++|-|||.+= +.....--+....+.+...........+............ ..++..+
T Consensus 337 ARdvA~~Ra~~-~~~pvvLgSATPSL--ES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 337 ARDVAVLRAKK-ENAPVVLGSATPSL--ESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHHHHHHHHHH-hCCCEEEecCCCCH--HHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 44555555544 58899999999754 4444332222344444433332223333322222111111 3344455
Q ss_pred HHHHcCCCcEEEEecccc------------------------------------------------------------cH
Q 017020 82 ITVYAKGGKTIVFTQTKR------------------------------------------------------------DA 101 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~------------------------------------------------------------~~ 101 (379)
-+....+.++|+|.|.+- -+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 455567889999977654 23
Q ss_pred HHHHHHHhc---CCcEEEeeCCCCHHH--HHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC------CC----
Q 017020 102 DEVSLALTS---IIASEALHGDISQHQ--RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN---- 166 (379)
Q Consensus 102 ~~l~~~L~~---~~~v~~lhg~m~~~~--R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~------P~---- 166 (379)
+.+.+.|.. +..+..+-+|.+... -+..++.|.+|+.+|||.|.+++.|.|+|++++|.-.|. |.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 344444432 234556666655433 467899999999999999999999999999998663332 21
Q ss_pred --ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHH
Q 017020 167 --DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 167 --~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le 203 (379)
....+.|-.||+||+++.|.+++-....+...++.+.
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 3455789999999999999998877766666665553
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=9.9e-08 Score=102.14 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=116.0
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHH-HHHHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|.-.+-.++.+-|--+ .+.+. ............. +......|..+ +.++...+..+.|+||-|.|...
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~iP-t~kp~~r~d~~d~-iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQVP-TFKPCLRIDHNDE-FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECC-CCCCceeeeCCCc-EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 55678899877777776666432 22222 1111111111111 22233455544 45556666778899999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC---c-----cceEEecCCCCChhHH
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---N-----VDLIIHYELPNDPETF 171 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip---~-----v~~VI~~~~P~~~~~y 171 (379)
.+.++..|.. +++...++..-...+-+-+-+.=+. -.|.|||+.|+||.||. . -=|||.-..|.+..--
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid 658 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRID 658 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHH
Confidence 9999999985 8888888887433333333333333 46899999999999983 2 2379999999999999
Q ss_pred HHHHhhccCCCCCceEEEEeChhh
Q 017020 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 172 iqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
-|-.||+||.|.+|.+..|++-.|
T Consensus 659 ~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 659 RQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHhcccccCCCCCceeEEEEcch
Confidence 999999999999999999988765
No 123
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=1.8e-07 Score=100.66 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=117.5
Q ss_pred EEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHH-HHHHHHHHcCCCcEEEEecccccH
Q 017020 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRDA 101 (379)
Q Consensus 23 ~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~~ 101 (379)
+-.||.|...+-.++..-|--+-+.| +...........-.. ......|..+ +.++...+..+.|+||-|.|.+..
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~Vv~I---PTnrP~~R~D~~D~v-y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLDVVVI---PTNRPIARKDKEDLV-YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCCEEEC---CCCCCcceecCCCeE-ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 34578888777777777664332222 111111111111122 2223455544 455556667789999999999999
Q ss_pred HHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC--------ccceEEecCCCCChhHHH
Q 017020 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPETFV 172 (379)
Q Consensus 102 ~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip--------~v~~VI~~~~P~~~~~yi 172 (379)
+.++..|.. +++...|++.....+-+-+-++=+.| .|-|||+.|+||.||. +-=|||--..|.|..---
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~ 719 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDR 719 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHH
Confidence 999999985 88888888875555555444544444 5889999999999995 334899999999999999
Q ss_pred HHHhhccCCCCCceEEEEeChhh
Q 017020 173 HRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 173 qR~GRtgR~G~~g~~i~l~~~~e 195 (379)
|-.||+||.|.+|.+-.|++-.|
T Consensus 720 QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 720 QLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHhcccccCCCCCcceEEEEccc
Confidence 99999999999999999988655
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=2.4e-07 Score=99.08 Aligned_cols=168 Identities=20% Similarity=0.174 Sum_probs=115.4
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+-.||.|...+..++.+-|--+-+.| +...........-.. ......|..++ .++...+..+.|+||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~Vv~I---PTnkP~~R~D~~d~v-y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDVVVI---PPNKPLARKDFNDLV-YLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCEEEC---CCCCCcccccCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 345688898777777777664332222 211111111111122 22334565544 4455556678999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC-------------------------
Q 017020 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip------------------------- 154 (379)
.+.++..|.. +++...|+..-...+-+-+-+.=+. -.|-|||+.|+||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999985 7887778776444443434433333 45899999999999993
Q ss_pred ------------ccceEEecCCCCChhHHHHHHhhccCCCCCceEEEEeChhh
Q 017020 155 ------------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (379)
Q Consensus 155 ------------~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e 195 (379)
+==|||--..|.|..-=-|-.||+||.|.+|.+-.|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12278888889998888999999999999999999988755
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.69 E-value=1.3e-07 Score=103.29 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCcEEEEecccccHHHHHHHHhcC---CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc--eEEe
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD--LIIH 161 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~---~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~--~VI~ 161 (379)
.++++|||++|.+..+.++..|... .....+..+.. ..|.+++++|++++..||++|+.+++|||+|+.. +||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3579999999999999999998641 12223333333 5789999999999999999999999999999887 4565
Q ss_pred cCCCCC----h--------------------------hHHHHHHhhccCCCCCceEEEEeCh
Q 017020 162 YELPND----P--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (379)
Q Consensus 162 ~~~P~~----~--------------------------~~yiqR~GRtgR~G~~g~~i~l~~~ 193 (379)
..+|.. + ..+.|-+||.=|.....-+++++++
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 665531 1 2236778888887644334444444
No 126
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.60 E-value=3.3e-06 Score=84.64 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=135.2
Q ss_pred CcEEEEeeeCChHHHHHHHHhcCCCc-eEEeecccc-----cccccceEEEEEEcCCcc-------HHH-----HHHHHH
Q 017020 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRT-----ILSDLI 82 (379)
Q Consensus 21 ~Q~llfSAT~p~~i~~l~~~~l~~p~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~-----~L~~ll 82 (379)
+|+|+||+...+++..+...++.|.. .+.+..... ......++|.+...+..+ +.+ +|..+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 79999999999999999999877643 343332222 234456677776544322 222 233333
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc--cccCCCCCccceE
Q 017020 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--AARGLDIPNVDLI 159 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv--~~rGiDip~v~~V 159 (379)
. -...+.+|||+++--+=-.+..+|.. .+....+|--.++.+-.+.-..|.+|+.++|+.|.= .-+-..|.++.+|
T Consensus 296 ~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~v 374 (442)
T PF06862_consen 296 R-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHV 374 (442)
T ss_pred h-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEE
Confidence 2 12457899999999888888888875 788999999999999999999999999999999973 3455667889999
Q ss_pred EecCCCCChhHHHHHHhhccCCCC------CceEEEEeChhhHHHHHHH
Q 017020 160 IHYELPNDPETFVHRSGRTGRAGK------EGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~G~------~g~~i~l~~~~e~~~l~~l 202 (379)
|.|++|..+.-|-..++-.+.... ...|.++++..|.-.|++|
T Consensus 375 iFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 375 IFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 999999999999888876555432 5789999999887655544
No 127
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=98.58 E-value=6.9e-08 Score=77.15 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=51.8
Q ss_pred CCCCCCCCCccccCCCCeEEEEEeeCCcccCCCCChhHHHHHHhhhCC-CCCCccccEEeeeCCceeeeecchhhHHHHh
Q 017020 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVCIDTVILLYFYASV 347 (379)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~-~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~~ 347 (379)
|+.+ ++.||++++.+|++|+.+..+. ..-++.+.|+.|.+..+ ...++||+|.+.+|.+ |+|||||+..++.
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~----~i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~~--GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSR----EIRSPGYAWRILRRQLSEEIADKVKGMTLLKDKM--GAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTSS--EEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCC----cCCCchhHHHHHHHhcCHHHHHhhCcEEEecCCC--EEEEEChHHHHHH
Confidence 4455 6789999999999999998875 45679999999998877 4677999999999998 9999999999999
Q ss_pred hhhcccCcc
Q 017020 348 RLGLFNTKS 356 (379)
Q Consensus 348 ~~~~~~~~~ 356 (379)
++...+...
T Consensus 74 ~~~~~~~~~ 82 (97)
T PF08152_consen 74 FLAKWEDSR 82 (97)
T ss_dssp HHHH--SS-
T ss_pred HHHhCcccC
Confidence 998877764
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.50 E-value=3.8e-06 Score=89.66 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=79.4
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHH-HHHHHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+..||.|...+-.++.+-|--+- +.+. ...........- .+......|.. ++.++...+..+.|+||-|.|.+.
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~v--v~IP-tnkp~~R~d~~d-~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~ 436 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLEV--VCIP-THRPMLRKDLPD-LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEK 436 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCE--EECC-CCCCccceeCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHH
Confidence 456688888777667766664332 2222 111111111111 12223334554 445566667778999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCC--HHHHHHHHhcccCCceeEEEeccccccCCCC
Q 017020 101 ADEVSLALTS-IIASEALHGDIS--QHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~--~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi 153 (379)
.+.++..|.. +++...+++.-. ..+-+-+-++=+ .-.|-|||+.|+||.||
T Consensus 437 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~--~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 437 SELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGR--KGSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCC--CCcEEEeccccCCCcCe
Confidence 9999999985 899999998632 333333333323 34689999999999998
No 129
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=1.4e-05 Score=85.54 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=79.4
Q ss_pred cEEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHH-HHHHHHHcCCCcEEEEeccccc
Q 017020 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (379)
Q Consensus 22 Q~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~ 100 (379)
.+-.||.|.-.+-.++.+-|--+-+.| . ...........-. +......|..++ .++...+..+.|+||-|.|.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~Vv~I--P-TnkP~~R~d~~d~-vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEVTVI--P-TNRPRRRQDWPDQ-VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcEEEc--C-CCCCeeeecCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHH
Confidence 455688898777777777664332222 1 1111111111111 222334555544 4555666778999999999999
Q ss_pred HHHHHHHHhc-CCcEEEeeCCCCH--HHHHHHHhcccCCceeEEEeccccccCCCC
Q 017020 101 ADEVSLALTS-IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (379)
Q Consensus 101 ~~~l~~~L~~-~~~v~~lhg~m~~--~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi 153 (379)
.+.++..|.. +++...++..-.+ .+-+-+-++=+ .-.|-|||++|+||.||
T Consensus 452 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 452 SELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR--KGAVTIATNMAGRGTDI 505 (939)
T ss_pred HHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC--CCcEEEeccCCCCCcCE
Confidence 9999999985 8998899986322 23333333333 34588999999999998
No 130
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.26 E-value=7.4e-06 Score=86.68 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHcCCCcEEEEe---cccccHHHHHHHHh--cCCcEEEeeCCCCHHHHHHHHhcccCCc---eeEEEe
Q 017020 72 TSKRTILSDLITVYAKGGKTIVFT---QTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVA 143 (379)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IIF~---~t~~~~~~l~~~L~--~~~~v~~lhg~m~~~~R~~~~~~F~~g~---~~iLVa 143 (379)
..|...|..++... ..++++|+ ....+..++.+.+. .|+.+..+||.|+..+|+.+++.|.+.. .-.|.+
T Consensus 577 s~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlS 654 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLS 654 (776)
T ss_pred hhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEe
Confidence 34666666666443 34444444 33344444444443 3899999999999999999999998743 336678
Q ss_pred ccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEE
Q 017020 144 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 144 Tdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
|-+.+.||++-+.+.||.||++++|+.=.|-++|+-|.|++-.|+++
T Consensus 655 sKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 655 SKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 88999999999999999999999999999999999999977666553
No 131
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.26 E-value=3.8e-06 Score=91.00 Aligned_cols=128 Identities=19% Similarity=0.363 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccC---CceeEEEeccccc
Q 017020 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (379)
Q Consensus 74 k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~---g~~~iLVaTdv~~ 148 (379)
|+-+|..||..+ ..+.++|||..-....+-|+++|. ++|+..-|-|.+..+.|+..++.|.. ..+-.|.||-+.+
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 444455555544 346899999999999999999998 59999999999999999999999986 3567999999999
Q ss_pred cCCCCCccceEEecCCCCChhHHHHHHhhccCCCCC--ceEEEEeChh--hHHHHHH
Q 017020 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSS--QRRTVRS 201 (379)
Q Consensus 149 rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~--g~~i~l~~~~--e~~~l~~ 201 (379)
-|||+...+.||.||--++|..=+|---||.|-|++ -.+|-|++.+ |..++.+
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 999999999999999999999999999999999955 4567788865 4445544
No 132
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.26 E-value=7.7e-06 Score=85.10 Aligned_cols=124 Identities=21% Similarity=0.347 Sum_probs=106.1
Q ss_pred CccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCc---eeEEEecc
Q 017020 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~---~~iLVaTd 145 (379)
...|..+|..+|..+ ..+.++|||..-....+-+-.++. ++|..+-+.|.++.++|...++.|.... .-.|++|-
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 356888888888665 557899999988877777777765 5899999999999999999999998643 55789999
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCC--ceEEEEeChh
Q 017020 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSS 194 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~--g~~i~l~~~~ 194 (379)
+.+-|||+-..+.||.||-.++|..=.|-.-|+.|-|++ -.+|-|++.+
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999999955 4556667765
No 133
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.20 E-value=2.6e-06 Score=90.44 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=71.9
Q ss_pred cEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecC-CCCChhHHHHHHhhccCCC--CCceEEE
Q 017020 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAIL 189 (379)
Q Consensus 113 ~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~-~P~~~~~yiqR~GRtgR~G--~~g~~i~ 189 (379)
....+|++|....|..+.--||.|...||+||..++-|||.|--++|.--| +--++-.|.|++||+||-| ..|.++.
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 356799999999999999999999999999999999999999888777665 4458899999999999988 5588777
Q ss_pred EeChhh
Q 017020 190 MFTSSQ 195 (379)
Q Consensus 190 l~~~~e 195 (379)
+--|..
T Consensus 1044 mgiP~~ 1049 (1330)
T KOG0949|consen 1044 MGIPRQ 1049 (1330)
T ss_pred EeCcHH
Confidence 766643
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.15 E-value=1.9e-05 Score=87.23 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCCc---EEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCcc--ceEEe
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLIIH 161 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~~---v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v--~~VI~ 161 (379)
.+++++||++|.+..+.++..|..... ...+.=+++...|.++++.|++++-.||++|..+.+|||+|+- ++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 467999999999999999999864211 2222223444568899999999888999999999999999975 67887
Q ss_pred cCCCC
Q 017020 162 YELPN 166 (379)
Q Consensus 162 ~~~P~ 166 (379)
..+|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 66553
No 135
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.14 E-value=9.6e-06 Score=84.68 Aligned_cols=122 Identities=19% Similarity=0.342 Sum_probs=106.5
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh--cCCcEEEeeCCCCHHHHHHHHhcccCCce--eEEEeccc
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKF--TVLVATDV 146 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~--~~~~v~~lhg~m~~~~R~~~~~~F~~g~~--~iLVaTdv 146 (379)
..|..++..++... ..+.++|+|..|+...+-+-..|. ++|...-+.|..+-..|...+++|.++.. -.|++|-|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 46888999988765 457799999999999999999998 48999999999999999999999997653 36789999
Q ss_pred cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCc--eEEEEeCh
Q 017020 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTS 193 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g--~~i~l~~~ 193 (379)
.+-|+|+-..+-||.||+-++|..=.|-.-|+-|.|++- .+|-|++.
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 999999999999999999999999999999999999553 34555654
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.07 E-value=2.2e-05 Score=85.18 Aligned_cols=123 Identities=21% Similarity=0.329 Sum_probs=102.0
Q ss_pred ccHHHHHHHHHHHHc---------------CCCcEEEEecccccHHHHHHHHhcC--CcE--EEeeCCCCHHHHHHHHhc
Q 017020 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTSI--IAS--EALHGDISQHQRERTLNG 132 (379)
Q Consensus 72 ~~k~~~L~~ll~~~~---------------~~~~~IIF~~t~~~~~~l~~~L~~~--~~v--~~lhg~m~~~~R~~~~~~ 132 (379)
.-|..+|.++|...+ .+.+++|||.-+...+-+.+.|.+. ..+ ..+.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 458889999887642 2358999999999999999888652 233 478999999999999999
Q ss_pred ccCC-ceeEE-EeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCce--EEEEeChh
Q 017020 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS 194 (379)
Q Consensus 133 F~~g-~~~iL-VaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~--~i~l~~~~ 194 (379)
|.++ .+++| .+|.|.+-|+|+.+.+.||.++-.++|..=+|-..|+.|-|++-. +|-+++..
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9998 78877 578999999999999999999999999999999999999996644 44455543
No 137
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00021 Score=76.21 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=60.2
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCCc--EEEeeCCCCHHHHHHHHhcccCCce-eEEEeccccccCCCCCcc--ceEEe
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIH 161 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~~--v~~lhg~m~~~~R~~~~~~F~~g~~-~iLVaTdv~~rGiDip~v--~~VI~ 161 (379)
.+++++||++|.+..+.+++.+..... ....+|.-+ +...++.|+.+.- .++|+|..+++|+|+|+- ..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 356999999999999999999986432 455566544 4578888887655 899999999999999866 56777
Q ss_pred cCCCC
Q 017020 162 YELPN 166 (379)
Q Consensus 162 ~~~P~ 166 (379)
..+|.
T Consensus 555 ~~lPf 559 (654)
T COG1199 555 VGLPF 559 (654)
T ss_pred EecCC
Confidence 77664
No 138
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.91 E-value=7e-05 Score=74.89 Aligned_cols=108 Identities=24% Similarity=0.343 Sum_probs=88.6
Q ss_pred CccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccC-CceeEEEeccccc
Q 017020 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAA 148 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~-g~~~iLVaTdv~~ 148 (379)
...|..+..-+++.+ ..+.++|||....-...+.+..|. --+++|..+|.+|.++++.|+- ..++-+.-+.|..
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgD 600 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGD 600 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC----CceEECCCchhHHHHHHHhcccCCccceEEEeeccC
Confidence 356888888888876 346799999988777777776664 4578999999999999999985 4678888899999
Q ss_pred cCCCCCccceEEecCCCC-ChhHHHHHHhhccCCC
Q 017020 149 RGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAG 182 (379)
Q Consensus 149 rGiDip~v~~VI~~~~P~-~~~~yiqR~GRtgR~G 182 (379)
..+|+|..++.|+..-.. +...=-||.||.-|+.
T Consensus 601 tSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 601 TSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999999876543 5566789999998875
No 139
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.87 E-value=8.2e-05 Score=81.32 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=102.8
Q ss_pred cHHHHHHHHH-HH-HcCCC--cEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCC--ceeEEEecc
Q 017020 73 SKRTILSDLI-TV-YAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (379)
Q Consensus 73 ~k~~~L~~ll-~~-~~~~~--~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g--~~~iLVaTd 145 (379)
.|...+.+++ .. ...+. +++||+......+-+...+.. ++....++|.++.+.|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6788888888 33 33455 899999999999999999986 56899999999999999999999986 455777888
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceE--EEEeChh
Q 017020 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTSS 194 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~--i~l~~~~ 194 (379)
+.+.|+|....++||+||+.+++....|...|+.|.|++..+ +-+++..
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 999999999999999999999999999999999999866544 4444443
No 140
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.85 E-value=0.00017 Score=77.07 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCcEEEEecccccHHHHHHHHhcC------CcEEEeeCCCCHH---------------------HHHHHHhcccC-Ccee
Q 017020 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~~------~~v~~lhg~m~~~---------------------~R~~~~~~F~~-g~~~ 139 (379)
+++++|||.++..|..++..|... ..+..+++..+.. ..+.++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 489999999999999999887532 3455666654332 23478889976 6889
Q ss_pred EEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCC
Q 017020 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (379)
Q Consensus 140 iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~ 181 (379)
|||++|.+..|.|.|.++.++..-+-.+ -.++|.+||+-|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 9999999999999999998776665454 4589999999993
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.84 E-value=6.6e-05 Score=81.79 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=58.4
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCc--cceEEec
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN--VDLIIHY 162 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~--v~~VI~~ 162 (379)
..+++++|+++|.+..+.++..|.. .+.+ ...|.-. .+.+++++|++++..||++|+.+.+|+|+|+ ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 3468999999999999999998864 3344 4445322 2566899999988899999999999999973 4555655
Q ss_pred CCC
Q 017020 163 ELP 165 (379)
Q Consensus 163 ~~P 165 (379)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 554
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.82 E-value=0.00061 Score=73.15 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=58.3
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCC-cEEEeeCCCCHHHHHHHHhccc----CCceeEEEeccccccCCCCCc--cceE
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDLI 159 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~-~v~~lhg~m~~~~R~~~~~~F~----~g~~~iLVaTdv~~rGiDip~--v~~V 159 (379)
.++.++||++|.+..+.++..|.... .....+|.. .|.++++.|+ .++..||++|..+..|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 35568999999999999999886421 233446653 4677786665 467789999999999999986 6788
Q ss_pred EecCCCC
Q 017020 160 IHYELPN 166 (379)
Q Consensus 160 I~~~~P~ 166 (379)
|...+|.
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 8777664
No 143
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.81 E-value=4.6e-05 Score=80.42 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=76.4
Q ss_pred CCcEEEEecccccHHHHHHHHhcC------CcEEEeeCCCCHHHHHHHHhcccC--CceeEEEeccccccCCCCCccceE
Q 017020 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~~------~~v~~lhg~m~~~~R~~~~~~F~~--g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.+++||||.+...|+.+...|... --+..+.|+-.+.+ ..++.|.. .-.+|.|+.|++..|+|+|.|.++
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 469999999999999999999742 34778888865554 34555543 456799999999999999999999
Q ss_pred EecCCCCChhHHHHHHhhccCC
Q 017020 160 IHYELPNDPETFVHRSGRTGRA 181 (379)
Q Consensus 160 I~~~~P~~~~~yiqR~GRtgR~ 181 (379)
|.+..-.|...|.|++||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999998883
No 144
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.73 E-value=8e-05 Score=65.58 Aligned_cols=105 Identities=23% Similarity=0.379 Sum_probs=69.9
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCC---cEEEeeCCCCHHHHHHHHhcccCCceeEEEecc--ccccCCCCCc--cceE
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~---~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd--v~~rGiDip~--v~~V 159 (379)
.++.+|||++|.+..+.+...+.... ....+.- ....+..+++.|+++.-.||+|+. ..+.|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 35899999999999999999887522 1222222 255788999999999999999999 9999999986 6689
Q ss_pred EecCCCCC----h--------------------------hHHHHHHhhccCCCCCceEEEEeCh
Q 017020 160 IHYELPND----P--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (379)
Q Consensus 160 I~~~~P~~----~--------------------------~~yiqR~GRtgR~G~~g~~i~l~~~ 193 (379)
|..++|.. + ....|-+||.=|....--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 98888742 1 1115778999887654444445544
No 145
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00012 Score=78.17 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=118.2
Q ss_pred EEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHH-HHHHHHHHHHcCCCcEEEEecccccHHH
Q 017020 25 LFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDADE 103 (379)
Q Consensus 25 lfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~~~~~~~~IIF~~t~~~~~~ 103 (379)
.++.|.-.+..++..-|..+-+.|.. .............+ .....|. .++.++...+..++|+||-+.+.+..+.
T Consensus 369 gmTGTa~te~~EF~~iY~l~vv~iPT---nrp~~R~D~~D~vy-~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ 444 (822)
T COG0653 369 GMTGTADTEEEEFDVIYGLDVVVIPT---NRPIIRLDEPDLVY-KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSEL 444 (822)
T ss_pred CCCCcchhhhhhhhhccCCceeeccC---CCcccCCCCccccc-cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchh
Confidence 35666666666666655443322211 11111111111111 1223444 4455566667778999999999999999
Q ss_pred HHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccc-----------eEEecCCCCChhHH
Q 017020 104 VSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD-----------LIIHYELPNDPETF 171 (379)
Q Consensus 104 l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~-----------~VI~~~~P~~~~~y 171 (379)
++..|.+ +++...+...-.. |+.-+-......--+-|||+.|+||.||.--. +||--.--.+..-=
T Consensus 445 ls~~L~~~~i~h~VLNAk~h~--~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRID 522 (822)
T COG0653 445 LSKLLRKAGIPHNVLNAKNHA--REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRID 522 (822)
T ss_pred HHHHHHhcCCCceeeccccHH--HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHH
Confidence 9999985 8888888777554 44434343333335789999999999983222 34443333344444
Q ss_pred HHHHhhccCCCCCceEEEEeChhhHHHHHHHHH-HhCCCceee----CCCCHHHHHHHHHHHHHHHHcccC
Q 017020 172 VHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER-DVGCKFEFV----SPPVVEDVLESSAEQVVATLNGVH 237 (379)
Q Consensus 172 iqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~-~~~~~~~~~----~~p~~~~i~~~~~~~~~~~l~~~~ 237 (379)
-|-.||+||.|-.|.+-.+++-.+. .++.+.. .+...+... ..|.........+++.....++.+
T Consensus 523 nQLRGRsGRQGDpG~S~F~lSleD~-L~r~F~~d~~~~~~~~l~~~~~e~i~~~~~~~~ie~aQk~vE~~n 592 (822)
T COG0653 523 NQLRGRAGRQGDPGSSRFYLSLEDD-LMRRFASDRLPALMDKLGLKEGEAIESKMVTRAVERAQRKVEGRN 592 (822)
T ss_pred HHhhcccccCCCcchhhhhhhhHHH-HHHHhcchhhHHHHHhhcCCccCccccHHHHHHHHHHHHHHHhcC
Confidence 5888999999999988877775442 2222111 000111111 113344566666777777666644
No 146
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.61 E-value=0.00041 Score=75.30 Aligned_cols=123 Identities=20% Similarity=0.334 Sum_probs=96.3
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCc--eeEEEecccc
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 147 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~--~~iLVaTdv~ 147 (379)
..|++.|.-||..+ ..+.++|||+.-.+..+-|..+|.- ++.-.-|.|...-++|+..+++|.... +..+.+|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 46777777777654 4578999999999999988888874 777888999999999999999998653 4567789999
Q ss_pred ccCCCCCccceEEecCCCCChhHHHHHHhhccCCC--CCceEEEEeChh
Q 017020 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (379)
Q Consensus 148 ~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~ 194 (379)
+.|||+-+.+.||.||--+++.---|---|+.|.| +.-+.|-|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999998887654444333333333 345677788764
No 147
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.58 E-value=0.00011 Score=73.54 Aligned_cols=115 Identities=19% Similarity=0.351 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHH-----HcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCc-eeE-EEec
Q 017020 73 SKRTILSDLITV-----YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-FTV-LVAT 144 (379)
Q Consensus 73 ~k~~~L~~ll~~-----~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~-~~i-LVaT 144 (379)
.|...+.+.|.. ..++.+.+|||......+.+...+.+ +++..-+.|..+...|....+.|+..+ ..| +++-
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 455555444433 13467999999999999999999975 899999999999999999999998653 333 3455
Q ss_pred cccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceE
Q 017020 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (379)
Q Consensus 145 dv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~ 187 (379)
..++.|+++...+.|+...+|+++.-.+|--.|+.|.|++..+
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSV 594 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhcccccee
Confidence 6889999999999999999999999999988888888866443
No 148
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.56 E-value=0.00038 Score=73.05 Aligned_cols=124 Identities=21% Similarity=0.333 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCc--eeEEEecccc
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 147 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~--~~iLVaTdv~ 147 (379)
..|...|..+|... ..+.+++||..-....+-|-..|.. ++.-.-+.|...-..|+.+++.|...+ .-+|.+|-+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 35778888888765 3468999999888777777777764 888999999999999999999998753 4477899999
Q ss_pred ccCCCCCccceEEecCCCCChhHHHHHHhhccCCCC--CceEEEEeChhh
Q 017020 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQ 195 (379)
Q Consensus 148 ~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~--~g~~i~l~~~~e 195 (379)
+-|||+-..++||.||+..+|-+=.|---|+.|.|+ +-+++.+++...
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999999999999999998888888889999884 466777787654
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.41 E-value=0.0023 Score=67.45 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCCcEEEEecccccHHHHHHHHhcCC-cEEEeeCCCCHHHHHHHHhcccC----CceeEEEeccccccCCCC--------
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQ----GKFTVLVATDVAARGLDI-------- 153 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~~~-~v~~lhg~m~~~~R~~~~~~F~~----g~~~iLVaTdv~~rGiDi-------- 153 (379)
.++.++|-+.|....+.++..|...+ ....++|+.+ .+...+++|+. |...||++|+.+..|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 46799999999999999999997644 3445667653 34567888886 478999999999999999
Q ss_pred --CccceEEecCCCC
Q 017020 154 --PNVDLIIHYELPN 166 (379)
Q Consensus 154 --p~v~~VI~~~~P~ 166 (379)
+.+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3478898777764
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.0056 Score=66.00 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CC-------cEEEeeCCCCHHHHHHHHhcccC----CceeEEEec--cccccCCCC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 153 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~-------~v~~lhg~m~~~~R~~~~~~F~~----g~~~iLVaT--dv~~rGiDi 153 (379)
++.+|||++|....+.+...+.. +. .....-+. ...+++.+++.|+. |.-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 68899999999999988887753 11 12222222 12577889999964 455699998 889999999
Q ss_pred Cc--cceEEecCCCC
Q 017020 154 PN--VDLIIHYELPN 166 (379)
Q Consensus 154 p~--v~~VI~~~~P~ 166 (379)
++ .+.||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 87 57898898886
No 151
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.29 E-value=0.0007 Score=73.28 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHHH----------cCCCcEEEEecccccHHHHHHHHhc
Q 017020 72 TSKRTILSDLITVY----------AKGGKTIVFTQTKRDADEVSLALTS 110 (379)
Q Consensus 72 ~~k~~~L~~ll~~~----------~~~~~~IIF~~t~~~~~~l~~~L~~ 110 (379)
.-|...|.++|+.. ..++++||||+..++|..|.+.|..
T Consensus 269 ~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 269 NPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45777777776542 1346899999999999999998854
No 152
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.21 E-value=0.0012 Score=68.67 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=104.2
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCce-eEEEeccccc
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAA 148 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~-~iLVaTdv~~ 148 (379)
..|+..|..+|..+ ..+.++|+|..-.+..+.+.++|. +++.-.-+.|...-.+|..++.+|...++ -.|.+|-..+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 45777788887665 457899999999999999999997 58999999999999999999999998554 4678999999
Q ss_pred cCCCCCccceEEecCCCCChhHHHHHHhhccCCCCC--ceEEEEeCh
Q 017020 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTS 193 (379)
Q Consensus 149 rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~--g~~i~l~~~ 193 (379)
-||++...+.||.||-.+++..-.|-..|+.|-|++ -++|-+++.
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999999999999999999955 445555554
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.18 E-value=0.0021 Score=64.45 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCC-cee-EEEecc
Q 017020 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATD 145 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g-~~~-iLVaTd 145 (379)
..|.++|.+-|... ...-+.|||..-....+.+.-.|.+ |+.+.-+-|+|++..|...++.|.+. .++ .||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 35777776554433 2235889999988888888888876 99999999999999999999999975 344 456667
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCC--CCceEEEEeChh
Q 017020 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G--~~g~~i~l~~~~ 194 (379)
..+..+|+-..++|...|+-+++.--+|--.|..|.| ++-.++.|+-.+
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 7778889999999999999999988888777777777 456667776554
No 154
>COG4889 Predicted helicase [General function prediction only]
Probab=96.92 E-value=0.00045 Score=73.27 Aligned_cols=102 Identities=20% Similarity=0.394 Sum_probs=79.6
Q ss_pred CcEEEEecccccHHHHHHHHhc--------------CC--cEEEeeCCCCHHHHHHHHh---cccCCceeEEEecccccc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS--------------II--ASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~--------------~~--~v~~lhg~m~~~~R~~~~~---~F~~g~~~iLVaTdv~~r 149 (379)
.++|-||.+.++...+++.+.. ++ .+....|.|.-.+|...+. .|...+++||--.-++++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4778999998888877766531 12 3444568899999865554 456778899988889999
Q ss_pred CCCCCccceEEecCCCCChhHHHHHHhhccCCC---CCceEEEE
Q 017020 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG---KEGTAILM 190 (379)
Q Consensus 150 GiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G---~~g~~i~l 190 (379)
|+|+|.++.||.+++-.+..+.+|-+||.-|-. +-|..|+-
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 999999999999999999999999999999943 23555543
No 155
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.69 E-value=0.0062 Score=65.71 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCc---eeEEEeccc
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATDV 146 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~---~~iLVaTdv 146 (379)
..|.++|.+++..+ ..+++++.||.-..-.+-+..+|. +.+.-.-+.|.....+|-..++.|.... ..+|.+|-.
T Consensus 709 sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstra 788 (1157)
T KOG0386|consen 709 SGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRA 788 (1157)
T ss_pred ccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecc
Confidence 57899999998766 457899999998888888888887 4788888999999999999999998754 457889999
Q ss_pred cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEE
Q 017020 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
.+.|+|+.-.+.||.||.-+++-...|+--|+.|.|..-.+-++
T Consensus 789 gglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 789 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred cccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 99999999999999999999999999999999999955444333
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.52 E-value=0.11 Score=55.51 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=47.0
Q ss_pred HHHHhcccCCceeEEEecc----ccccCCCCCccceEEecC------CCC------ChhHHHHHHhhccCCCCCceEEEE
Q 017020 127 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYE------LPN------DPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 127 ~~~~~~F~~g~~~iLVaTd----v~~rGiDip~v~~VI~~~------~P~------~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
+.+++.|. ++.+|||+|. +++ ++++.|+..| .|. ....+.|-+||+||.++.|.+++.
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 45778886 5899999998 555 3566665444 232 234457899999999999999988
Q ss_pred eChhhHHHHHHH
Q 017020 191 FTSSQRRTVRSL 202 (379)
Q Consensus 191 ~~~~e~~~l~~l 202 (379)
..+ +...++.+
T Consensus 536 ~~p-~~~~~~~l 546 (665)
T PRK14873 536 AES-SLPTVQAL 546 (665)
T ss_pred eCC-CCHHHHHH
Confidence 644 43444443
No 157
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.47 E-value=0.012 Score=63.26 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=98.2
Q ss_pred ccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc----C--C-----------------cEEEeeCCCCHHHHH
Q 017020 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I--I-----------------ASEALHGDISQHQRE 127 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~----~--~-----------------~v~~lhg~m~~~~R~ 127 (379)
..|.-+|.++|... .-+.+.|||..+....+.+-.+|.. + + .-.-|.|..+..+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 45777788888754 3478999999999999988888862 1 1 134578899999999
Q ss_pred HHHhcccCCc----eeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEE
Q 017020 128 RTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 128 ~~~~~F~~g~----~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
++.+.|.+-. .-.||+|-+.+-|||+-..+-||.||..++|..=.|-+=|+-|.|+.--||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998742 34899999999999999999999999999999999999999999977666654
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.32 E-value=0.015 Score=63.90 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=73.3
Q ss_pred EEEecccccHHHHHHHHhc-----C--CcEEEeeCCCCHHHHHHHHhcc----------------------cC----Cce
Q 017020 92 IVFTQTKRDADEVSLALTS-----I--IASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (379)
Q Consensus 92 IIF~~t~~~~~~l~~~L~~-----~--~~v~~lhg~m~~~~R~~~~~~F----------------------~~----g~~ 138 (379)
+|=.++.+.+-.++..|.. + +..+++|+..+...|..+.+.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 6777888888888887752 2 4578899999887776655442 11 456
Q ss_pred eEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCC--ceEEEEeChhhHHHH
Q 017020 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE--GTAILMFTSSQRRTV 199 (379)
Q Consensus 139 ~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~--g~~i~l~~~~e~~~l 199 (379)
.|+|+|.+.+.|+|+ +.+++| --|.+..+.+||.||+.|.|.. +..-+++-....+.+
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 799999999999998 455554 3467899999999999998733 233333334444444
No 159
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=96.05 E-value=0.15 Score=56.74 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=86.6
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-----------------------CCcEEEeeCCCCHHHHHHHHhcccCC
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----------------------IIASEALHGDISQHQRERTLNGFRQG 136 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----------------------~~~v~~lhg~m~~~~R~~~~~~F~~g 136 (379)
.+......+++++||+++++.|..++..+-. .++...=|-+|+.....-+-.-|..|
T Consensus 1351 ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g 1430 (1674)
T KOG0951|consen 1351 AIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG 1430 (1674)
T ss_pred HHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC
Confidence 3334345578999999999999887754421 01222238899999999999999999
Q ss_pred ceeEEEeccccccCCCCCccceEE-----ecC------CCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHH
Q 017020 137 KFTVLVATDVAARGLDIPNVDLII-----HYE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (379)
Q Consensus 137 ~~~iLVaTdv~~rGiDip~v~~VI-----~~~------~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~l 202 (379)
.+.++|...- -.|+-... +.|| -|| .+.+.....|+.|++.| .|.|+++.....+.++++.
T Consensus 1431 ~i~v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1431 AIQVCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred cEEEEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 9999987755 66665532 3343 233 46678999999999988 5789999999888887754
No 160
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.83 E-value=0.035 Score=52.70 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=58.9
Q ss_pred HHHhcccCCceeEEEeccccccCCCCCc--------cceEEecCCCCChhHHHHHHhhccCCCCC-ceEEEEeC---hhh
Q 017020 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMFT---SSQ 195 (379)
Q Consensus 128 ~~~~~F~~g~~~iLVaTdv~~rGiDip~--------v~~VI~~~~P~~~~~yiqR~GRtgR~G~~-g~~i~l~~---~~e 195 (379)
...+.|.+|+..|+|.|+.++.|+.+.. -.+-|...+|++.+..+|..||+.|.|+. .-.|.++. +.|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4566899999999999999999998742 23456788999999999999999999853 44455443 346
Q ss_pred HHHHHHHHHH
Q 017020 196 RRTVRSLERD 205 (379)
Q Consensus 196 ~~~l~~le~~ 205 (379)
++....+.+.
T Consensus 132 ~Rfas~va~r 141 (278)
T PF13871_consen 132 RRFASTVARR 141 (278)
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 161
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.80 E-value=0.055 Score=58.11 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHH-HHcCCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc
Q 017020 72 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (379)
Q Consensus 72 ~~k~~~L~~ll~-~~~~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~ 148 (379)
..|..+...++. ....+.++||.+++++-+.++.+.+.. +..+..+||+++..+|.+...+..+|..+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 457666544443 334467899999999999999999975 56789999999999999999999999999999997543
Q ss_pred cCCCCCccceEEecC
Q 017020 149 RGLDIPNVDLIIHYE 163 (379)
Q Consensus 149 rGiDip~v~~VI~~~ 163 (379)
. +.+.++.+||--+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5677888877443
No 162
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.73 E-value=0.031 Score=60.05 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=71.3
Q ss_pred ccHHHH-HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 72 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|..+ +..++.....+.+++|.++|+.-|.+.+..+.. ++.+..+||+++..+|..+++...+|..+|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 455543 233344444577999999999999988887763 47899999999999999999999999999999997
Q ss_pred c-cccCCCCCccceEEe
Q 017020 146 V-AARGLDIPNVDLIIH 161 (379)
Q Consensus 146 v-~~rGiDip~v~~VI~ 161 (379)
. +...+.+.++.+||-
T Consensus 373 ~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 373 ALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHhcccchhcccceEEE
Confidence 4 444577888998873
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.64 E-value=0.052 Score=56.22 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHH-HHcCCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccc
Q 017020 72 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (379)
Q Consensus 72 ~~k~~~L~~ll~-~~~~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~ 148 (379)
..|.++...++. ....++++||.+++..-+.+++..|.. +..+..+||+++..+|.+...+..+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 456666554443 334567899999999999999999975 46788999999999999999999999999999997644
Q ss_pred cCCCCCccceEEe
Q 017020 149 RGLDIPNVDLIIH 161 (379)
Q Consensus 149 rGiDip~v~~VI~ 161 (379)
. ..++++.+||-
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 3 45778887773
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.44 E-value=0.039 Score=59.27 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=91.8
Q ss_pred CCcEEEEecccccHHHHHHHHhc--------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceE
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~--------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~V 159 (379)
.+.+++|.+.-...-.|...|.. .+....+|+.++..+..++.+....|..++++.|.++...+.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 56889999998888888777642 3678899999999999999999999999999999999999999998888
Q ss_pred EecCC------------------CCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHh
Q 017020 160 IHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (379)
Q Consensus 160 I~~~~------------------P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (379)
|..+. -.+....+||.||+||. +.|.|..+++.. .+..+++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a---rF~~l~~~~ 783 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA---RFEALEDHG 783 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH---HHHHHHhcC
Confidence 75442 12556679999999997 688998887764 344444443
No 165
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.056 Score=55.05 Aligned_cols=181 Identities=19% Similarity=0.254 Sum_probs=114.9
Q ss_pred CcEEEEeeeCChHHHHHHHHhcCCCc-eEEeecccc----cccccceEEEE--EEcCC-----ccHHHHHH-HHHHHHc-
Q 017020 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD----EKLAEGIKLYA--ISTTA-----TSKRTILS-DLITVYA- 86 (379)
Q Consensus 21 ~Q~llfSAT~p~~i~~l~~~~l~~p~-~i~~~~~~~----~~~~~~i~~~~--~~~~~-----~~k~~~L~-~ll~~~~- 86 (379)
+|+++||+--.+.+..+...++.|-. .+....... ......+.|.+ +.+.. ..+..... .++-.+.
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 69999999999999999988887642 222111000 11111122211 11111 12222211 1121121
Q ss_pred -CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc--ccCCCCCccceEEec
Q 017020 87 -KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA--ARGLDIPNVDLIIHY 162 (379)
Q Consensus 87 -~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~--~rGiDip~v~~VI~~ 162 (379)
...-++||.++--+--.+..++.. .+....+|---++..-.+.-+-|-.|...+|+-|.=+ -|--+|.+|..||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 124679999998888888888874 5555556655556666667777889999999999754 577889999999999
Q ss_pred CCCCChhHH---HHHHhhccCCC----CCceEEEEeChhhHHHHHH
Q 017020 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRS 201 (379)
Q Consensus 163 ~~P~~~~~y---iqR~GRtgR~G----~~g~~i~l~~~~e~~~l~~ 201 (379)
.+|..|.-| +.+.+|+.-.| ..-.|.++|+..+.-.|..
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 999998665 66777765433 3457888999887654443
No 166
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.78 E-value=0.92 Score=49.01 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCC
Q 017020 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (379)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiD 152 (379)
.......++..+..+.++-||++|...++.+++.... ...+..++|.-+..+- +.| ++.+|++=|++...|++
T Consensus 268 ~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 268 ETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLS 341 (824)
T ss_pred hhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEec
Confidence 3345556666666678888999999999988888775 5677888887655522 223 56899999999999999
Q ss_pred CCccc--eEEecCCC----CChhHHHHHHhhccCCCCCceEEEEeCh
Q 017020 153 IPNVD--LIIHYELP----NDPETFVHRSGRTGRAGKEGTAILMFTS 193 (379)
Q Consensus 153 ip~v~--~VI~~~~P----~~~~~yiqR~GRtgR~G~~g~~i~l~~~ 193 (379)
+.... -+.-|=-| .+..+..|++||.-.-. ....++.+++
T Consensus 342 f~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred cchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 96443 23333112 35567899999976554 4555555544
No 167
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.76 E-value=0.089 Score=56.06 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=70.6
Q ss_pred ccHHHH-HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 72 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|..+ +..++.....+.+++|-++|+.-|.+.+..+.. ++.+..+||+++..+|...++...+|+.+|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 455543 334444445577999999999999988877753 57899999999999999999999999999999997
Q ss_pred cc-ccCCCCCccceEE
Q 017020 146 VA-ARGLDIPNVDLII 160 (379)
Q Consensus 146 v~-~rGiDip~v~~VI 160 (379)
.. ...+++.++.+||
T Consensus 347 ~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 347 ALIQEKVEFKRLALVI 362 (630)
T ss_pred HHHhccccccccceEE
Confidence 54 3457778888877
No 168
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.75 E-value=0.11 Score=55.62 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=74.4
Q ss_pred CccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhcC---CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 71 ~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~---~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
.+.|.++..+++... ..++++||-++....+..+...|... ..+..+|+++++.+|.+...+..+|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 346777777777543 45789999999999999999999863 45899999999999999999999999999999975
Q ss_pred cccCCCCCccceEEecC
Q 017020 147 AARGLDIPNVDLIIHYE 163 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~ 163 (379)
+. =.-+++..+||-.+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 42 34566777777444
No 169
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.74 E-value=0.16 Score=43.36 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhcccCCc-eeEEEeccccccCCCCCcc--ceEEecCCCC
Q 017020 121 ISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPNV--DLIIHYELPN 166 (379)
Q Consensus 121 m~~~~R~~~~~~F~~g~-~~iLVaTdv~~rGiDip~v--~~VI~~~~P~ 166 (379)
....+...+++.|++.. ..||++|.-.++|+|+|+- +.||..++|.
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 44445788888888654 3799999889999999874 5788777774
No 170
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.19 E-value=0.25 Score=52.08 Aligned_cols=118 Identities=16% Similarity=0.266 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHH--cCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccC--CceeE-EEecc
Q 017020 72 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV-LVATD 145 (379)
Q Consensus 72 ~~k~~~L~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~--g~~~i-LVaTd 145 (379)
.-|...+...+... ....+++|...=.....-+...|.. +.....+||.....+|+.+++.|.. |..+| |++=.
T Consensus 728 S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 728 SCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 34544444444332 2345555544333333444556654 6778899999999999999999964 43444 45556
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEE
Q 017020 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~ 189 (379)
.-+.|+|+-+.+|+|..|+-+++.-=.|-+.|.-|.|++..+++
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 77889999999999999999999999999999999997665544
No 171
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.15 E-value=0.18 Score=43.07 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.3
Q ss_pred HHHHHHhcccCCce---eEEEeccc--cccCCCCCc--cceEEecCCCC
Q 017020 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELPN 166 (379)
Q Consensus 125 ~R~~~~~~F~~g~~---~iLVaTdv--~~rGiDip~--v~~VI~~~~P~ 166 (379)
+...+++.|++... .||+++.- .++|||+|+ ++.||..++|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34667777776433 58888876 999999987 46788888774
No 172
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.12 E-value=0.14 Score=54.89 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=75.0
Q ss_pred cCCccHHHHHHHHHHHH-cCCCcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 69 TTATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 69 ~~~~~k~~~L~~ll~~~-~~~~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
+..+.|.++...++... ..++++||-++....+..+...+.. +..+..+|+++++.+|.....+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 44567888887777643 5678999999999999999999875 67899999999999999999999999999999996
Q ss_pred ccccCCCCCccceEE
Q 017020 146 VAARGLDIPNVDLII 160 (379)
Q Consensus 146 v~~rGiDip~v~~VI 160 (379)
.| --.-+++..+||
T Consensus 305 SA-lF~Pf~~LGLII 318 (730)
T COG1198 305 SA-LFLPFKNLGLII 318 (730)
T ss_pred hh-hcCchhhccEEE
Confidence 53 234456777666
No 173
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.98 E-value=0.025 Score=64.73 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=77.5
Q ss_pred CcEEEEecccccHHHHHHHHhc--CCcEEEeeCCCC-----------HHHHHHHHhcccCCceeEEEeccccccCCCCCc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~--~~~v~~lhg~m~-----------~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~ 155 (379)
-..|+||+-+..+..+.+.+.. ...+..+-|.+. +..++.++..|+....++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3569999999999888888764 334444544432 223678999999999999999999999999999
Q ss_pred cceEEecCCCCChhHHHHHHhhccCCC
Q 017020 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (379)
Q Consensus 156 v~~VI~~~~P~~~~~yiqR~GRtgR~G 182 (379)
++.|+.++.|....+|+|+.||+-+++
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999977654
No 174
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.96 E-value=0.15 Score=56.55 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred ccHHHHHH-HHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 72 TSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~L~-~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|..+.. .++.....+.+++|.++|+.-|.+.+..+.. ++.+..++|..+..++.++++.+++|+.+|+|+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 45665432 3334444568999999999999998887763 35678899999999999999999999999999997
Q ss_pred -ccccCCCCCccceEEe
Q 017020 146 -VAARGLDIPNVDLIIH 161 (379)
Q Consensus 146 -v~~rGiDip~v~~VI~ 161 (379)
.+...+.+.++.+||-
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 4455678888888773
No 175
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.93 E-value=0.23 Score=54.45 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----C-CcEEE-eeCCCCHHHHHHHHhcccCCceeEEEecccc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-----I-IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~-~~v~~-lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~ 147 (379)
.++++++.++|..-+.+.++.|.. + +.+.. +||.|+.++++..+++|.+|..+|||+|...
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 468999999999999988888863 2 33333 9999999999999999999999999999753
No 176
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.93 E-value=0.44 Score=54.11 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=68.1
Q ss_pred ccHHHHHHH-HHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 72 TSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 72 ~~k~~~L~~-ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..|..+... .......+.+++|-++|+.-|.+.+..+.. ++.+..++|..+..++..+++..++|..+|+|+|.
T Consensus 632 sGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp 711 (1147)
T PRK10689 632 FGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711 (1147)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECH
Confidence 467653321 122223578999999999999999888763 35678899999999999999999999999999996
Q ss_pred -ccccCCCCCccceEE
Q 017020 146 -VAARGLDIPNVDLII 160 (379)
Q Consensus 146 -v~~rGiDip~v~~VI 160 (379)
.+...+++.++.++|
T Consensus 712 ~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 712 KLLQSDVKWKDLGLLI 727 (1147)
T ss_pred HHHhCCCCHhhCCEEE
Confidence 444456777888776
No 177
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.53 E-value=0.65 Score=48.29 Aligned_cols=66 Identities=23% Similarity=0.422 Sum_probs=54.3
Q ss_pred EEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccccC-CCCCccce
Q 017020 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (379)
Q Consensus 91 ~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~rG-iDip~v~~ 158 (379)
+||.++|++-|.++++.+.. ++.+..++|+++...+...++. | .+|+|||+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999888762 4668999999998777655554 6 89999997 46666 88889998
Q ss_pred EE
Q 017020 159 II 160 (379)
Q Consensus 159 VI 160 (379)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 77
No 178
>PRK14701 reverse gyrase; Provisional
Probab=89.19 E-value=1.5 Score=51.71 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.4
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
++.++||.++|+.-+.+++..+.. +..+..+||+++..++..+++.+++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999988888763 346788999999999999999999999999999984
No 179
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=88.77 E-value=0.57 Score=48.20 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=46.5
Q ss_pred cEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
-+|||++|++-|..+...|.. ++.+..+.|||+...+++++++ ...|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 489999999999999998862 6889999999999999999987 457999998
No 180
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.20 E-value=3.9 Score=38.11 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=74.3
Q ss_pred ecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCc----eeEEEeccccccCCCCCccceEEecCCCC
Q 017020 95 TQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPN 166 (379)
Q Consensus 95 ~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~----~~iLVaTdv~~rGiDip~v~~VI~~~~P~ 166 (379)
+.....-+++...|.. ++.+..++|+.+... -.+.++. ..|+|.=+.++||+.+++........-|.
T Consensus 90 ~~~~~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~ 164 (239)
T PF10593_consen 90 DPDPPSWEEIKPELPKAISDGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSK 164 (239)
T ss_pred cCCCcCHHHHHHHHHHHHhcCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCc
Confidence 3444555566665542 378888887765433 3455443 88999999999999999999988888899
Q ss_pred ChhHHHHHHhhcc-CCCCCceEEEEeChhhHHHHHHHH
Q 017020 167 DPETFVHRSGRTG-RAGKEGTAILMFTSSQRRTVRSLE 203 (379)
Q Consensus 167 ~~~~yiqR~GRtg-R~G~~g~~i~l~~~~e~~~l~~le 203 (379)
..+++.||.=--| |.|-.+.|-++.++.-...+..+.
T Consensus 165 ~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 165 QYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred hHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHH
Confidence 9999999954444 455567788888776665555553
No 181
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=87.78 E-value=2.1 Score=48.94 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=50.4
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCc---EEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-----IIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~---v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
.+.+++|.++|+.-|.+++..+.. ++. +..+||+++..++...++.+.+|..+|+|+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 367899999999999998887763 233 335899999999999999999999999999984
No 182
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.16 E-value=3.6 Score=42.57 Aligned_cols=89 Identities=20% Similarity=0.333 Sum_probs=67.6
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccccC-CCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~rG-iDip~v 156 (379)
+..+||-++|++-|..+...... .+.+.+++|+.+...+..-++ +| +.|+|||+ .+..| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~g-vdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---RG-VDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---cC-CcEEEeCChHHHHHHHcCCccccce
Confidence 45699999999999988877652 355899999999877665554 23 68999996 45666 688899
Q ss_pred ceEE--------ecCCCCChhHHHHHHhhccC
Q 017020 157 DLII--------HYELPNDPETFVHRSGRTGR 180 (379)
Q Consensus 157 ~~VI--------~~~~P~~~~~yiqR~GRtgR 180 (379)
+++| ..++-.++...++.++|+-|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 9888 34455577888888888777
No 183
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.49 E-value=6.2 Score=40.57 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=51.3
Q ss_pred cEEEEecccccHHHHHHHHh---c--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc------ccccCCCCCccce
Q 017020 90 KTIVFTQTKRDADEVSLALT---S--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~---~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd------v~~rGiDip~v~~ 158 (379)
-.+|.|+|++-|..+...-. + ++.+.++||+++.-++..-++ -...++|||+ +--.++|+..+++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 45777899988877765443 3 578999999999988877776 3357999998 4456888999987
Q ss_pred EE
Q 017020 159 II 160 (379)
Q Consensus 159 VI 160 (379)
.|
T Consensus 374 LV 375 (731)
T KOG0339|consen 374 LV 375 (731)
T ss_pred EE
Confidence 66
No 184
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.23 E-value=3.1 Score=42.39 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=52.4
Q ss_pred CcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccc-cCCCCCcc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~-rGiDip~v 156 (379)
.++||.|+|++-+.++++.+.. ++.+..++|+.+...+...+. ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 4799999999999988877652 467888999998876655444 4578999995 333 35788888
Q ss_pred ceEEe
Q 017020 157 DLIIH 161 (379)
Q Consensus 157 ~~VI~ 161 (379)
++||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88873
No 185
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=85.08 E-value=3.5 Score=43.72 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCCcEEEEecccccHHHHHHHHh----c-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-cccC
Q 017020 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALT----S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG 150 (379)
Q Consensus 77 ~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~----~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-~~rG 150 (379)
++...+..+..+.++..-.+|---|+.-+..+. . ++.+..+.|.+...+|.+++++..+|+++++|.|-. +-..
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 344455556668899999999766665555544 3 688999999999999999999999999999999975 5667
Q ss_pred CCCCccceEEe
Q 017020 151 LDIPNVDLIIH 161 (379)
Q Consensus 151 iDip~v~~VI~ 161 (379)
+++.+.-+||-
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 88888888774
No 186
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.83 E-value=2.5 Score=43.33 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=52.9
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
.++.+||.+++++-+......|.. ++.+..++|+.+..++..++.....|..+++++|+-
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 467899999999988877777764 889999999999999999999999999999999974
No 187
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.28 E-value=5.3 Score=35.40 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=49.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cccC-CCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~rG-iDip~v 156 (379)
+.++||.|+++.-+.+.+..+.. +..+..+||+.+..+....+. +...|+|+|.- +..+ .+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999998887776642 467788999998876654443 56789999952 2222 456677
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
+++|
T Consensus 145 ~~lI 148 (203)
T cd00268 145 KYLV 148 (203)
T ss_pred CEEE
Confidence 7766
No 188
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.85 E-value=3.9 Score=43.70 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=51.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccccC-CCCCc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPN 155 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~rG-iDip~ 155 (379)
..++||.|+|++-|.+++..+.. ++.+..+||+.+...+...+. ....|+|+|+ .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 45799999999999988877652 567889999988766554442 3468999995 33444 67888
Q ss_pred cceEE
Q 017020 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88777
No 189
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=81.51 E-value=3 Score=35.84 Aligned_cols=46 Identities=37% Similarity=0.636 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCceEEe
Q 017020 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50 (379)
Q Consensus 5 GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~~i~~ 50 (379)
.+.+.+..++..++...+.+++|||.++.....+..++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 6778889999999889999999999999999999999887766654
No 190
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=80.93 E-value=6 Score=41.81 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=52.1
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
.++.++|.++++.-+......|.. ++.+..+||+++..++..++.....|..+++++|+-
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 357899999999888777777764 889999999999999999999999999999998864
No 191
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=80.60 E-value=5.6 Score=42.87 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=81.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CC------------------cEEEeeCCCCHHHHHHHHhcccCC---ceeEEEecc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-II------------------ASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 145 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~------------------~v~~lhg~m~~~~R~~~~~~F~~g---~~~iLVaTd 145 (379)
+.++|||.......+.+.+.|.. .+ .-.-+.|-.+..+|++.+++|.+. ..-+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 56888998888777777777653 11 123467888899999999999863 235788899
Q ss_pred ccccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEEE
Q 017020 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 146 v~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
...-||++-..+-+|.||.-+++.--.|.+-|.-|.|+...|+++
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 999999998888888899888888888888899999977777665
No 192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=80.16 E-value=4.9 Score=40.58 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=51.9
Q ss_pred CcEEEEecccccHHHHHHHHh---c--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc------cccCCCCCccc
Q 017020 89 GKTIVFTQTKRDADEVSLALT---S--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~---~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv------~~rGiDip~v~ 157 (379)
.++||.++|++-+..+++.+. . ++.+..++|+.+...+...+. +..+|+|+|+- ....++..+++
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 579999999998888777654 2 578899999998877765553 45689999972 23456778888
Q ss_pred eEEe
Q 017020 158 LIIH 161 (379)
Q Consensus 158 ~VI~ 161 (379)
+||.
T Consensus 150 ~lVi 153 (434)
T PRK11192 150 TLIL 153 (434)
T ss_pred EEEE
Confidence 7773
No 193
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.10 E-value=12 Score=37.26 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc--
Q 017020 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-- 147 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-- 147 (379)
+.+|..++... ....++|.++|++-|..+++.++. ++.+..+-|||.-... .+..++ +..|||||+-.
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q--~~~L~k--kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQ--ANQLSK--KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHH--HHHhhc--CCCEEEeCcHHHH
Confidence 34556666532 346899999999999998887762 5789999999875543 344443 45689999842
Q ss_pred -----ccCCCCCccceEE--------ecCCCCChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeC
Q 017020 148 -----ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (379)
Q Consensus 148 -----~rGiDip~v~~VI--------~~~~P~~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (379)
..|..+..+.+.| +-|+-... +|+-++=..+ .-.++++..--..+++|++..-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~l-d~ILk~ip~e------rqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEEL-DYILKVIPRE------RQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHH-HHHHHhcCcc------ceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 5777877777665 23332222 3333332322 22333443334455666655544454444
Q ss_pred CCC
Q 017020 215 PPV 217 (379)
Q Consensus 215 ~p~ 217 (379)
.+.
T Consensus 265 ~s~ 267 (476)
T KOG0330|consen 265 VSS 267 (476)
T ss_pred ccc
Confidence 444
No 194
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.06 E-value=4 Score=43.08 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=51.0
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----cccc--CCCCCcc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~r--GiDip~v 156 (379)
.++||.++|++-|.+++..+.. ++.+..+||+.+...+...+. +..+|+|+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999988887653 467899999998877665553 3568999996 2322 3667777
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 161 ~~lV 164 (572)
T PRK04537 161 EICV 164 (572)
T ss_pred eeeE
Confidence 7666
No 195
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=79.47 E-value=3 Score=44.98 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=49.7
Q ss_pred HhcccCCceeEEEeccccccCCCCCccceEE--------ecCCCCChhHHHHHHhhccCCCC-CceEEEEe
Q 017020 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (379)
Q Consensus 130 ~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI--------~~~~P~~~~~yiqR~GRtgR~G~-~g~~i~l~ 191 (379)
-++|-+|+-.|-|-+..++-||-+..-.-|+ -..+|++.+.-+|..|||.|..+ .+--|+|+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 3578899999999999999999997665555 46799999999999999999873 24444444
No 196
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.52 E-value=0.71 Score=49.40 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=91.1
Q ss_pred ccHHHHHHHHHHHHc-CC-CcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCc-ee-EEEeccc
Q 017020 72 TSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATDV 146 (379)
Q Consensus 72 ~~k~~~L~~ll~~~~-~~-~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~-~~-iLVaTdv 146 (379)
..|...+..++.... .. .+++||+.-..-..-+...|. .++....+-|.|+...|.+.+..|..+. .+ .+++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 345555555554331 11 489999988877777777665 3677788899999999999999999653 22 4567889
Q ss_pred cccCCCCCccceEEecCCCCChhHHHHHHhhccCCCCCceEEE
Q 017020 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G~~g~~i~ 189 (379)
...|+++-...||+-.|+-+++..--|-+-|+.|-|+.-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999886544433
No 197
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=77.90 E-value=29 Score=29.26 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=56.6
Q ss_pred ccHHHHHH-HHHHHHc--CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHH-HHHHHHhcccCCceeEEE
Q 017020 72 TSKRTILS-DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLV 142 (379)
Q Consensus 72 ~~k~~~L~-~ll~~~~--~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~-~R~~~~~~F~~g~~~iLV 142 (379)
..|..... .++.... +..++|+.++++.-++.....+.. ...+..+||+.+.. +....+ .+...|+|
T Consensus 25 sGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv 100 (169)
T PF00270_consen 25 SGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILV 100 (169)
T ss_dssp SSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEE
T ss_pred CccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 45654433 3333332 235999999999999999888864 35788999998855 333333 56678999
Q ss_pred eccc------cccCCCCCccceEE
Q 017020 143 ATDV------AARGLDIPNVDLII 160 (379)
Q Consensus 143 aTdv------~~rGiDip~v~~VI 160 (379)
+|.- ....+++.++++||
T Consensus 101 ~T~~~l~~~~~~~~~~~~~~~~iV 124 (169)
T PF00270_consen 101 TTPEQLLDLISNGKINISRLSLIV 124 (169)
T ss_dssp EEHHHHHHHHHTTSSTGTTESEEE
T ss_pred cCcchhhccccccccccccceeec
Confidence 9963 22234677777777
No 198
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=77.52 E-value=6.6 Score=40.06 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=50.6
Q ss_pred cEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc------ccccCCCCCccce
Q 017020 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd------v~~rGiDip~v~~ 158 (379)
++||.++|++-|.++.+.+.. ++.+..++|+.+.......+ .+..+|+|||+ .....+++.++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999988887753 46778899998876544333 25678999996 2244567888887
Q ss_pred EEe
Q 017020 159 IIH 161 (379)
Q Consensus 159 VI~ 161 (379)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 773
No 199
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=75.29 E-value=8 Score=38.93 Aligned_cols=69 Identities=10% Similarity=0.192 Sum_probs=50.1
Q ss_pred CcEEEEecccccHHHHHHHHh---c--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----c-ccCCCCCccc
Q 017020 89 GKTIVFTQTKRDADEVSLALT---S--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~---~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~-~rGiDip~v~ 157 (379)
.++||.++|++-|.++++.+. . ++.+..++|+.+.......++ ...+|+|+|+- + ...+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCccccccc
Confidence 579999999999998876654 2 577889999987665544432 34689999972 2 2356788888
Q ss_pred eEEe
Q 017020 158 LIIH 161 (379)
Q Consensus 158 ~VI~ 161 (379)
++|.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8773
No 200
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=72.73 E-value=9.7 Score=43.18 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=49.9
Q ss_pred CCCcEEEEecccccHHH-HHHHHhcCCcEEEeeCCCCHHHHHHHHhcccC--CceeEEEeccc
Q 017020 87 KGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDV 146 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~-l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~--g~~~iLVaTdv 146 (379)
.++.+||.+++++-+.. +......++.+..+.|+++..++..++..+.. |..+||++|+-
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 35789999999988764 44444568999999999999999999998876 88999999983
No 201
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=72.06 E-value=15 Score=37.54 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=49.8
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc------cccCCCCCccc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv------~~rGiDip~v~ 157 (379)
.++||.++|++-+.+++..+.. ++.+..++|+.+.....+ .+..+..+|+|+|+- ....+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999988876652 467888999977554433 334567789999972 22345667777
Q ss_pred eEE
Q 017020 158 LII 160 (379)
Q Consensus 158 ~VI 160 (379)
+||
T Consensus 240 ~lV 242 (475)
T PRK01297 240 VMV 242 (475)
T ss_pred eEE
Confidence 766
No 202
>PRK13766 Hef nuclease; Provisional
Probab=71.55 E-value=99 Score=33.76 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=53.2
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc--C---CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc------cccCCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS--I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIP 154 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~--~---~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv------~~rGiDip 154 (379)
.+++++||.|+|+.-++..+..+.. + ..+..++|+.+..+|...... ..|+|+|+- ...-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChh
Confidence 3568999999999888877777764 2 367889999999988776643 469999963 23345677
Q ss_pred ccceEEec
Q 017020 155 NVDLIIHY 162 (379)
Q Consensus 155 ~v~~VI~~ 162 (379)
++++||--
T Consensus 131 ~~~liVvD 138 (773)
T PRK13766 131 DVSLLIFD 138 (773)
T ss_pred hCcEEEEE
Confidence 78887743
No 203
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=70.73 E-value=11 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 017020 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 83 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
....+..++++||++-..+...+..|.. ++.+..+.|+++
T Consensus 46 ~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 46 NELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3344567899999987778888888874 678889999974
No 204
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=70.52 E-value=15 Score=41.43 Aligned_cols=88 Identities=17% Similarity=0.278 Sum_probs=70.3
Q ss_pred cHHHHH-HHHHHHHcCCCcEEEEecccccHHHHHHHHhc---C--CcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-
Q 017020 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS---I--IASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (379)
Q Consensus 73 ~k~~~L-~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~--~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd- 145 (379)
.|.++. .........++++.|.++|.=-|++=++.+.. + +.+..+..=.+.++...+++..++|+++|+|.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 466543 33344445678999999999888877777763 3 4577788888999999999999999999999995
Q ss_pred ccccCCCCCccceEE
Q 017020 146 VAARGLDIPNVDLII 160 (379)
Q Consensus 146 v~~rGiDip~v~~VI 160 (379)
++..++-+.|+-++|
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 788889999999877
No 205
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=70.26 E-value=8.6 Score=29.98 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 017020 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 82 l~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
+....++.+++|+|.+-..+...+..|.. ++.+..+.||+.
T Consensus 55 ~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 55 LDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 33445567899999988888888888875 888888999874
No 206
>PRK09401 reverse gyrase; Reviewed
Probab=70.25 E-value=15 Score=42.14 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=47.7
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcE--EEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-----IIAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v--~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
.+.+++|.++|+.-+.+++..+.. +..+ ...||+++..++....+.+.+|..+|+|+|+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 467899999999999999988863 2333 3446677788888888999989999999996
No 207
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=69.37 E-value=13 Score=39.47 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=51.5
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..+.+||.+++++-+......+.. ++.+..+++..+..++..++...+.|..+++++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 357899999999888877777764 78899999999999999999999999999999885
No 208
>PTZ00110 helicase; Provisional
Probab=67.40 E-value=13 Score=38.97 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=49.6
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccccC-CCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~rG-iDip~v 156 (379)
+..+||.++|++-|.++...+.. ++.+..++|+.+.......+. . ...|+|+|+ .+.++ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~---~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR---R-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH---c-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 34689999999999888877653 467888899988665544432 2 368999996 34444 567788
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 279 ~~lV 282 (545)
T PTZ00110 279 TYLV 282 (545)
T ss_pred cEEE
Confidence 8777
No 209
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=63.85 E-value=19 Score=39.35 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-ccccCC---------C
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGL---------D 152 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-v~~rGi---------D 152 (379)
++.++|+.++|++-+.+....+.. ++.+..++|+.+..+|..+.+ ..+|+|+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 456899999999999988887763 467888999999888754432 258999996 332221 2
Q ss_pred CCccceEE
Q 017020 153 IPNVDLII 160 (379)
Q Consensus 153 ip~v~~VI 160 (379)
+.++++||
T Consensus 155 l~~l~~vV 162 (742)
T TIGR03817 155 LRRLRYVV 162 (742)
T ss_pred HhcCCEEE
Confidence 56778777
No 210
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=61.75 E-value=1.8e+02 Score=31.41 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=47.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CC-------cEEEeeCCCCHHHHHHHHhccc----CCceeEEEe--ccccccCCCC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFR----QGKFTVLVA--TDVAARGLDI 153 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~-------~v~~lhg~m~~~~R~~~~~~F~----~g~~~iLVa--Tdv~~rGiDi 153 (379)
++-+++|.++.+--..+...++. ++ ...++-..-+ -+.+++.|. .|.-.+|.| =--++.|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999888777777763 22 2222222222 244555554 244345544 4568999999
Q ss_pred Cc--cceEEecCCCC
Q 017020 154 PN--VDLIIHYELPN 166 (379)
Q Consensus 154 p~--v~~VI~~~~P~ 166 (379)
.+ ...||..++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 65 45788888775
No 211
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=61.50 E-value=23 Score=38.46 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHHcCCCcEEEEecccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCC--ceeEEEeccccccC
Q 017020 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAARG 150 (379)
Q Consensus 81 ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g--~~~iLVaTdv~~rG 150 (379)
+|...+.+++-||.|++-- .+..-..+.+ .+.+..+||. |.+|.++-..+..+ .++|||+|--++.|
T Consensus 441 yLkq~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 441 YLKQIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHHcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 3444455788899998743 2222223332 5789999998 79999998888876 78999999766554
No 212
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.21 E-value=14 Score=34.89 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=52.5
Q ss_pred cEEEEecccccHHHHHHHHhc------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc------ccccCCCCCccc
Q 017020 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~~------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd------v~~rGiDip~v~ 157 (379)
.++|.|.|++-|-.+.....+ ...+..+.||++-..-++.+.. -..|+|+|+ +-.+.+++.++.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 679999999988888766542 3578999999998877777765 567999998 235667888888
Q ss_pred eEEe
Q 017020 158 LIIH 161 (379)
Q Consensus 158 ~VI~ 161 (379)
|.+.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 7663
No 213
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=60.89 E-value=37 Score=32.20 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=43.1
Q ss_pred eEEEEEeeCCcccC-CCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHH---hhhhcccCcceEee
Q 017020 286 WVTLQLTRDSAFSR-GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYAS---VRLGLFNTKSVIWL 360 (379)
Q Consensus 286 ~~~l~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 360 (379)
..-+.+.... + +.++-+|++|+|.+ .|++.+.||+|-+.++...+ +.+.+.+++ ..++..+.-+|+..
T Consensus 97 i~~l~i~~~~---kF~~l~HrD~LGaLm~-LGIkRe~iGDIlv~~~~~~~---v~v~~~i~~fi~~nl~kIg~~~V~~~ 168 (267)
T PLN00051 97 VAALSVSGNF---MFDPASHGDFLGAILG-TGITRDKVGDILVQGERGAQ---VLVVPELVEFLSSSLTKVRTVPVECR 168 (267)
T ss_pred EEEEEEEccc---CCCCCCHHHHHHHHHH-cCCcHhhcCCEEEcCCCcEE---EEEcHHHHHHHHHHhhhccceeEEEE
Confidence 3445565333 3 56899999999999 99999999999765554333 333333333 34455555555553
No 214
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=60.85 E-value=32 Score=37.39 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=48.2
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
..++... .+.++.|.++|..-|.+.++.+.. ++.+..+.|+++.++|...+. .+|+++|+.
T Consensus 89 pa~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 89 PAYLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 3334454 367899999999988888887763 688999999999988877664 589999986
No 215
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=60.64 E-value=1.4e+02 Score=31.02 Aligned_cols=72 Identities=29% Similarity=0.342 Sum_probs=54.8
Q ss_pred CCcEEEEecccccHHHHHHHHhc--CC---cEEEeeCCCCHHHHHHHHhcccCCceeEEEecc------ccccCCCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~--~~---~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd------v~~rGiDip~v 156 (379)
++++|+-.+|+--+.+=+..+.+ ++ .+..+.|..++++|...... .+|.|||+ +.+==+|+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 45788889999988887777764 43 57799999999999877643 46999996 33334799999
Q ss_pred ceEEecCC
Q 017020 157 DLIIHYEL 164 (379)
Q Consensus 157 ~~VI~~~~ 164 (379)
.++|.=..
T Consensus 133 ~~lifDEA 140 (542)
T COG1111 133 SLLIFDEA 140 (542)
T ss_pred eEEEechh
Confidence 99885433
No 216
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=57.48 E-value=26 Score=41.18 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----------------CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc----
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----------------~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv---- 146 (379)
+.++|+.+++++-+.++...|+. ++.+...||+.++.+|.+.+. ...+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 35789999999888887776631 467889999999999887554 34689999973
Q ss_pred -c-ccC-CCCCccceEEe
Q 017020 147 -A-ARG-LDIPNVDLIIH 161 (379)
Q Consensus 147 -~-~rG-iDip~v~~VI~ 161 (379)
+ .++ -.+.++++||-
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 2 222 25788888883
No 217
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=54.28 E-value=42 Score=31.78 Aligned_cols=156 Identities=20% Similarity=0.277 Sum_probs=82.2
Q ss_pred cEEEEeeeCChHH------HHHHHHhcCCCceEEeecccccccccceEEEEEEcCC-ccHHHHHHHHHHHH-cCCCcEEE
Q 017020 22 QSMLFSATMPSWV------KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVY-AKGGKTIV 93 (379)
Q Consensus 22 Q~llfSAT~p~~i------~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~-~~~~~~II 93 (379)
.+-+++.|.+..- ++++++|-.. .|.|..+.... .+....+..++..- ++.-++||
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIV 67 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIV 67 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEE
Confidence 3567778876543 3455555432 23333333332 23444555555532 34569999
Q ss_pred EecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCC------ccceEEecCCCC
Q 017020 94 FTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELPN 166 (379)
Q Consensus 94 F~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip------~v~~VI~~~~P~ 166 (379)
+|+...-+-...+.+++ .-....+-|.+.. --.++.. ..++.+.+|-..||-.++ +....|||.+|.
T Consensus 68 v~q~vpGt~~af~kIkekRpDIl~ia~~~~E--Dp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfpr 141 (275)
T PF12683_consen 68 VSQAVPGTAEAFRKIKEKRPDILLIAGEPHE--DPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPR 141 (275)
T ss_dssp EE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETT
T ss_pred EeCCCcchHHHHHHHHhcCCCeEEEcCCCcC--CHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEechh
Confidence 99999888888888764 4455666665322 2233332 357889999999999886 556789999998
Q ss_pred ChhHHHHHHhhccCCCCCceEEEEeChhhHHHHHHHHHHhCCCceeeCCCCH
Q 017020 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218 (379)
Q Consensus 167 ~~~~yiqR~GRtgR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~ 218 (379)
+.. |..-.-| +..++.-.+.+|.+|.....|++
T Consensus 142 hms-~~~l~~R------------------r~~M~~~C~~lGi~fv~~taPDP 174 (275)
T PF12683_consen 142 HMS-YELLARR------------------RDIMEEACKDLGIKFVEVTAPDP 174 (275)
T ss_dssp GGG-SHHHHHH------------------HHHHHHHHHHCT--EEEEEE---
T ss_pred hcc-hHHHHHH------------------HHHHHHHHHHcCCeEEEEeCCCC
Confidence 776 4333322 35566667778888887766653
No 218
>PRK13767 ATP-dependent helicase; Provisional
Probab=52.97 E-value=33 Score=38.19 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=48.0
Q ss_pred CcEEEEecccccHHHHHHHHh--------------c---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc-c--
Q 017020 89 GKTIVFTQTKRDADEVSLALT--------------S---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-A-- 148 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~--------------~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~-~-- 148 (379)
.++|+.+++++-+.++...|. . ++.+...||+.++.++.+.+.. ..+|+|+|+-- .
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 468999999998887765432 1 3467889999999998776643 45899999731 1
Q ss_pred ---cC--CCCCccceEEe
Q 017020 149 ---RG--LDIPNVDLIIH 161 (379)
Q Consensus 149 ---rG--iDip~v~~VI~ 161 (379)
.. -.+.++++||-
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 13567787773
No 219
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=52.24 E-value=59 Score=30.60 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=36.5
Q ss_pred EEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc
Q 017020 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (379)
Q Consensus 67 ~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~ 110 (379)
+...-.+..+++..+-+...+++.+.+|+++.++++.+.+.|++
T Consensus 167 v~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~ 210 (256)
T COG2519 167 VFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRE 210 (256)
T ss_pred EEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh
Confidence 33444567778888888888889999999999999999999986
No 220
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=52.06 E-value=21 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=29.8
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCCH
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 123 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~~ 123 (379)
+..++||||.+-..+..++..|.. ++. +..+.|++..
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 467899999998888888888875 665 8888998743
No 221
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=52.02 E-value=45 Score=37.04 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 78 L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
+..++... .+..+.|.++|..-|...++.+.. ++.+.+++|+++..+|...+ ..+|+++|+-
T Consensus 114 Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 114 LPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 33444444 356899999999988888887763 67899999999999887766 3689999974
No 222
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=50.28 E-value=72 Score=30.04 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=42.7
Q ss_pred eEEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHH---hhhhcccCcceEee
Q 017020 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYAS---VRLGLFNTKSVIWL 360 (379)
Q Consensus 286 ~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 360 (379)
.+-+.++.... =+.++-+|++|+|.+ .|+..+.+|+|-+.++...+ +.+.+.+++ ..++..+.-+|++.
T Consensus 88 i~~l~i~~~~k--F~~l~Hrd~LGalm~-lGi~R~~iGDI~v~~~~~~~---v~v~~~i~~~i~~~l~kIg~~~V~~~ 159 (257)
T TIGR03069 88 IQGLLIEGNFL--FDPASHEDFRGALLG-TGIVREKIGDIWVLGDRGAQ---ALCTPELAEFLQEKLGQVRDVEVKCK 159 (257)
T ss_pred eEEEEEEcccc--cCCCCHHHHHHHHHH-cCCcHhhcCCEEEecCCcEE---EEECHHHHHHHHHHhhhccceeEEEE
Confidence 44555653321 145888999999999 89999999999877765333 333333322 34455555555443
No 223
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=49.37 E-value=53 Score=35.27 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=45.8
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCC
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi 153 (379)
.+..++|.++|+.-|...++.+.. ++.+..+.|++++++|.... ..+|+++|+. +-|.|.
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDy 207 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDY 207 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhh
Confidence 467999999999999888887763 68899999999988777654 2478888864 334443
No 224
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=49.35 E-value=47 Score=25.22 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHcCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 80 ~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
..+....++.+++|+|++-..+...+..|.. ++ .+..+.|++.
T Consensus 48 ~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 48 DWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred HHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 3344445678999999998888888888875 65 4778888863
No 225
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=48.96 E-value=33 Score=25.07 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=36.9
Q ss_pred EEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccC
Q 017020 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (379)
Q Consensus 91 ~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rG 150 (379)
.++.|.....+..+.+....+..+.+..|.....+.-..+..+... ..|++|+|--..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 4677777777777766654444566666665444455556665444 5799998854444
No 226
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=48.77 E-value=22 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=30.5
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC--cEEEeeCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~--~v~~lhg~m~ 122 (379)
.++.++++||++-..+...+..|.. |+ .+..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3467899999998888888888875 77 6889999984
No 227
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=48.46 E-value=78 Score=26.64 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhcC-CcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCC
Q 017020 75 RTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (379)
Q Consensus 75 ~~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~~-~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiD 152 (379)
...+..++.. +..+.+++|+|.+.+.++.+-+.|-.. -....=|+-.... ......|+|+++... -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 4667777654 466889999999999999999998641 1122223221110 112357999987643 22
Q ss_pred CCccceEEecCCC
Q 017020 153 IPNVDLIIHYELP 165 (379)
Q Consensus 153 ip~v~~VI~~~~P 165 (379)
.+..+++||.+..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 3346789988743
No 228
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=47.95 E-value=1.2e+02 Score=23.64 Aligned_cols=71 Identities=28% Similarity=0.274 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHH---cCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEec
Q 017020 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (379)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaT 144 (379)
..|...+..++... ....+++|+|++...++.....+.. ...+..+|+........ ........++++|
T Consensus 11 ~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t 86 (144)
T cd00046 11 SGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGT 86 (144)
T ss_pred CchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEEC
Confidence 45655444444333 2458999999999999888887764 26678888886655544 1123456778888
Q ss_pred cc
Q 017020 145 DV 146 (379)
Q Consensus 145 dv 146 (379)
.-
T Consensus 87 ~~ 88 (144)
T cd00046 87 PG 88 (144)
T ss_pred cH
Confidence 65
No 229
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.27 E-value=54 Score=34.03 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=49.9
Q ss_pred CcEEEEecccccHHHHHHH---Hhc--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-------cccCCCCCcc
Q 017020 89 GKTIVFTQTKRDADEVSLA---LTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AARGLDIPNV 156 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~---L~~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-------~~rGiDip~v 156 (379)
.++||.|+|++-+-.++.. |.. .+.++..-|||+-..++.++.. ..+|+|||+- =+.+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4889999999876665544 443 4678888899999999988853 4589999983 2345566666
Q ss_pred ceEEe
Q 017020 157 DLIIH 161 (379)
Q Consensus 157 ~~VI~ 161 (379)
.+.|.
T Consensus 329 EVLvl 333 (691)
T KOG0338|consen 329 EVLVL 333 (691)
T ss_pred eEEEe
Confidence 65553
No 230
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=45.03 E-value=47 Score=28.17 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 77 ~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
.+...+....+..+++|+|.+-..+...+..|.. ++ .+..+.|++.
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 3444555555567999999998777777878874 55 7899999974
No 231
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=43.62 E-value=49 Score=35.02 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=47.8
Q ss_pred CCcEEEEecccccHHHHHHHH-hcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 88 GGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L-~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
.+-+||..+-..--+.=...| ..|+.+.++|+.++.++|..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 578899988776555434444 4689999999999999999999999999999997665
No 232
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=43.04 E-value=76 Score=34.95 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCC-HHHHHHHHhcccCCceeEEEecc
Q 017020 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 79 ~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~-~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
..++... .+..+.|.++|..-|..-++.+.. ++.+..+.|+++ ..+|..... .+|+++|+
T Consensus 111 p~~l~al-~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y~------~dIvygT~ 176 (790)
T PRK09200 111 PLYLNAL-EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYE------ADIIYTTN 176 (790)
T ss_pred HHHHHHH-cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhcC------CCEEEECC
Confidence 3334444 478999999999888887777652 688999999999 888875533 68999994
No 233
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=42.34 E-value=43 Score=25.81 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=29.0
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
.+..+++++|++-..+...+..|.+ ++ .+..++|++.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 4467999999998878888888864 55 5777999863
No 234
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=42.11 E-value=37 Score=26.09 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.4
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
.++.++|+||++-..+...+..|.. ++ .+..+.|+|.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 4567899999987777777777764 66 5788888873
No 235
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.19 E-value=42 Score=34.47 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=47.0
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccccC-CCCCccc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~rG-iDip~v~ 157 (379)
..+||..+|++-|+.++..-.+ ...+...+|+-+-. ....+-.+.++|+|||+ +.++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~----~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLG----AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchh----hhhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 5789999999999999887653 35667777773322 22334456789999996 56666 5566666
Q ss_pred eEE
Q 017020 158 LII 160 (379)
Q Consensus 158 ~VI 160 (379)
++|
T Consensus 229 ~~v 231 (482)
T KOG0335|consen 229 FLV 231 (482)
T ss_pred EEE
Confidence 554
No 236
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=41.06 E-value=42 Score=26.65 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=28.6
Q ss_pred HcCCCcEEEEecccc--cHHHHHHHHhc-CCcEEEeeCCCC
Q 017020 85 YAKGGKTIVFTQTKR--DADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 85 ~~~~~~~IIF~~t~~--~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
..++.++++||++-. .+..++..|.. ++.+..+.|++.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 345689999999753 56777777764 778888999974
No 237
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=40.97 E-value=66 Score=33.45 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCcEEEEecccccHHHHHHHHh---c--CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----ccc-cCCCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALT---S--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~---~--~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~-rGiDip~v 156 (379)
+..+||.++|++-|.++...+. . ++.+..+.|+.+..+... .++.| ..|+|+|+ .+. .++++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---RIQQG-VELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---HhcCC-CCEEEECHHHHHHHHHcCCccchhe
Confidence 4579999999998887766554 2 345666677655443322 23333 68999995 333 35778888
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
.+||
T Consensus 272 ~~lV 275 (518)
T PLN00206 272 SVLV 275 (518)
T ss_pred eEEE
Confidence 8776
No 238
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=40.55 E-value=41 Score=25.83 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~ 122 (379)
+.++++||.+-..+...+..|.. ++.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 46899999987777777877864 777777888874
No 239
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=40.36 E-value=73 Score=24.62 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.5
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCCH
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 123 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~~ 123 (379)
++.++++||++-..+...+..|.. ++ .+..+.|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 367899999998777777777764 66 47788998653
No 240
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=40.13 E-value=2.8e+02 Score=26.70 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=60.0
Q ss_pred ccHHHHHHHHHHHH-----cC-CCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHh------------c
Q 017020 72 TSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN------------G 132 (379)
Q Consensus 72 ~~k~~~L~~ll~~~-----~~-~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~------------~ 132 (379)
..|...|.++++.. .. +-+++|.++..++.+.+-..|. +++..--+.|.+...+....-. .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 57999999999877 32 3488999999998888877776 3666667777655444332220 0
Q ss_pred -c--cCCceeE-EEeccccccC----CCCCccceEEecCCCCChh-HHHHHHhhccCCCCCceEEEEeChh
Q 017020 133 -F--RQGKFTV-LVATDVAARG----LDIPNVDLIIHYELPNDPE-TFVHRSGRTGRAGKEGTAILMFTSS 194 (379)
Q Consensus 133 -F--~~g~~~i-LVaTdv~~rG----iDip~v~~VI~~~~P~~~~-~yiqR~GRtgR~G~~g~~i~l~~~~ 194 (379)
- ......| |+.|+-.... .+-.+++.||-||.-.++. ..+|++-..+|.++.--.+.++...
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~n 245 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSN 245 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETT
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCC
Confidence 0 0123344 4444434332 2334778999999866543 5666665555544444455555443
No 241
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=39.35 E-value=40 Score=26.65 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=27.4
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CCc--EEEeeCCCCH
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDISQ 123 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~~--v~~lhg~m~~ 123 (379)
+.+++|||.+-..+...+..|.. ++. +..+.|+|+.
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 46899999887777667777764 773 7889999843
No 242
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=38.85 E-value=96 Score=34.76 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
+..++|.++|+.-|...++.+.. ++.+.++.|+++..++...+ ..+|+|+|+-
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 45688889999988888887753 57899999999998876554 2689999974
No 243
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=38.78 E-value=33 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.7
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
.++.+++|||.+-..+...+..|.. ++. +..+.||+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 3567899999987677777777764 774 777888864
No 244
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=38.76 E-value=93 Score=24.40 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 017020 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 78 L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
+...+.......+++|+|.+-..+...+..|.. ++. +..+.|++.
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 333444445567899999988888888888864 664 778889874
No 245
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=38.67 E-value=2.1e+02 Score=30.92 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=71.9
Q ss_pred cCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCC--c-EEEe--------------------e-----CC
Q 017020 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--A-SEAL--------------------H-----GD 120 (379)
Q Consensus 69 ~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~--~-v~~l--------------------h-----g~ 120 (379)
+....|.-.+..++... +.++||.++++..|..++..|...+ . |..+ + +.
T Consensus 37 vtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~ 114 (655)
T TIGR00631 37 VTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIND 114 (655)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCCh
Confidence 34456777777777654 5789999999999999999986422 2 3322 1 11
Q ss_pred CCHHHHHHHHhcccCCceeEEEeccccccCCCCCc----cceEEecCCCCChhHHHHHHh
Q 017020 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (379)
Q Consensus 121 m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~----v~~VI~~~~P~~~~~yiqR~G 176 (379)
--...|..++..+.++.-.|+|||-.+-+|+--|+ ..+.+..+-..+.+.+..+.-
T Consensus 115 ~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 115 EIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 12446788888888777778888866677775554 345666666677777766553
No 246
>PRK02362 ski2-like helicase; Provisional
Probab=37.97 E-value=53 Score=35.81 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=53.7
Q ss_pred ccHHHHH-HHHHHHHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
..|..+. ..++....+++++|+.+++++-|.+.+..+.. ++.+..++|+...... .+ +..+|+|||+-
T Consensus 50 SGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpe 122 (737)
T PRK02362 50 SGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSE 122 (737)
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHH
Confidence 3454332 23344444578999999999999998888763 5678889999765431 11 44689999952
Q ss_pred ----ccc-C-CCCCccceEE
Q 017020 147 ----AAR-G-LDIPNVDLII 160 (379)
Q Consensus 147 ----~~r-G-iDip~v~~VI 160 (379)
+.+ + ..+.++++||
T Consensus 123 k~~~llr~~~~~l~~v~lvV 142 (737)
T PRK02362 123 KVDSLLRNGAPWLDDITCVV 142 (737)
T ss_pred HHHHHHhcChhhhhhcCEEE
Confidence 222 2 2346778777
No 247
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=37.67 E-value=44 Score=27.43 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=28.7
Q ss_pred cCCCcEEEEec-ccccHHHHHHHHhc-CCcEEEeeCCCCH
Q 017020 86 AKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDISQ 123 (379)
Q Consensus 86 ~~~~~~IIF~~-t~~~~~~l~~~L~~-~~~v~~lhg~m~~ 123 (379)
.++.+++|||. +-..+...+..|.. |+.+..+.||+..
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 45679999996 45566677777765 8889999999743
No 248
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=37.02 E-value=36 Score=35.66 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=40.1
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
+--|||..+|++-|-.+.+-|.+ .+++..+-||..-..- .-|-..++|||||+
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E-----~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFE-----LERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHH-----HHhhhcCCeEEech
Confidence 44789999999999999998874 4788888888654322 22335678999998
No 249
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=36.61 E-value=1.2e+02 Score=26.76 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCcEEEEe-cccccHHHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEE
Q 017020 75 RTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IIF~-~t~~~~~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
.++...++......+.-+.|+ .+...++.+++.|.. ++.+...||-.++++.+.+.+..+....++|
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 355666666543344344444 555666778888875 4555566999988887888877776554443
No 250
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=36.18 E-value=46 Score=38.09 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=66.4
Q ss_pred cCCCcEEEEecccccHHHHHHHHh-cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCCCccceEEecCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~-~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~ 164 (379)
+...++|+|..--..-+.+...+. .++....- |+ -+.-...+..|++ ---.|+-+...+-|+|+-+..||+..++
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~-~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLD-GE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhc-cC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecc
Confidence 345688899865555555554443 23322222 21 2334556777775 2335567788899999999999999999
Q ss_pred CCChhHHHHHHhhccCCCCCc
Q 017020 165 PNDPETFVHRSGRTGRAGKEG 185 (379)
Q Consensus 165 P~~~~~yiqR~GRtgR~G~~g 185 (379)
-.++..-.|-+||..|-|++-
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred ccCchHHHhhhhhhhhccccc
Confidence 999999999999999999653
No 251
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=35.38 E-value=78 Score=26.83 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=51.7
Q ss_pred CCccHHHHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhcC-CcEEEeeCCCCHHHHHHHHhcccCCceeEEEe-ccc
Q 017020 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 146 (379)
Q Consensus 70 ~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~~-~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVa-Tdv 146 (379)
....+...+..++.. +..+.+++|.|.+.+.++.+-+.|-.. -....=|+-.... ......|+++ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCC
Confidence 445677888888754 466889999999999999999988642 1222234421110 0234578887 321
Q ss_pred cccCCCCCccceEEecCC
Q 017020 147 AARGLDIPNVDLIIHYEL 164 (379)
Q Consensus 147 ~~rGiDip~v~~VI~~~~ 164 (379)
-+.++.+++||.+.
T Consensus 81 ----~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 ----RNANHRDLLINLDG 94 (142)
T ss_pred ----CCCCCCcEEEECCC
Confidence 23445677888874
No 252
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=35.12 E-value=91 Score=34.43 Aligned_cols=71 Identities=18% Similarity=0.300 Sum_probs=56.9
Q ss_pred CceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCC--CCceE-----------EEEeChhhHHHHHHH
Q 017020 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTA-----------ILMFTSSQRRTVRSL 202 (379)
Q Consensus 136 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G--~~g~~-----------i~l~~~~e~~~l~~l 202 (379)
...+.+.+-.++-.|-|-|+|=.++-.....|..+=.|.+||.-|-- ..|.- .+++...+...++.|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 34789999999999999999999998888889999999999998832 33432 346777888888877
Q ss_pred HHHh
Q 017020 203 ERDV 206 (379)
Q Consensus 203 e~~~ 206 (379)
.+..
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 6654
No 253
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=34.71 E-value=46 Score=25.62 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=27.8
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
.+..+++|||.+-..+...+..|.. ++. +..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 3567999999887777777777764 654 777888763
No 254
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=34.56 E-value=2.7e+02 Score=23.21 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=48.7
Q ss_pred ccHHHHHH-HHHHHHcC--CCcEEEEecccccHHHHHHHHhc-C-----CcEEEeeCCCCHHHHHHHHhcccCCceeEEE
Q 017020 72 TSKRTILS-DLITVYAK--GGKTIVFTQTKRDADEVSLALTS-I-----IASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (379)
Q Consensus 72 ~~k~~~L~-~ll~~~~~--~~~~IIF~~t~~~~~~l~~~L~~-~-----~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLV 142 (379)
..|...+. .++..... ..++++.+++...+..+...+.. . .....+++.... .....+.++...+++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKR----EQLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchH----HHHHHHhcCCCCEEE
Confidence 45666333 33333332 36899999998888888777763 1 234455555432 233344555568999
Q ss_pred ec-----cccccC-CCCCccceEE
Q 017020 143 AT-----DVAARG-LDIPNVDLII 160 (379)
Q Consensus 143 aT-----dv~~rG-iDip~v~~VI 160 (379)
+| +....+ .+...++++|
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iI 134 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVI 134 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEE
Confidence 98 333333 3455555555
No 255
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=34.50 E-value=61 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
..+++++|.+-..+...+..|.. ++. +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 56899999987778888888874 664 778899874
No 256
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=34.00 E-value=2.8e+02 Score=31.38 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=56.2
Q ss_pred HHHHHhc--ccCCceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCC--C-CCceEEEEeChhhHHHHH
Q 017020 126 RERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAILMFTSSQRRTVR 200 (379)
Q Consensus 126 R~~~~~~--F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~--G-~~g~~i~l~~~~e~~~l~ 200 (379)
+.....+ ..+...++||.+|.+-.|.|-|.+. .+-.|-|.---..+|-+-||.|. + +++-.|+.+..-....-+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~~ 658 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALKK 658 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHHH
Confidence 3444444 4556889999999999999999776 66677787778899999999994 3 233334444444444555
Q ss_pred HHHHHhCCC
Q 017020 201 SLERDVGCK 209 (379)
Q Consensus 201 ~le~~~~~~ 209 (379)
.++-+....
T Consensus 659 Al~~Y~~~~ 667 (962)
T COG0610 659 ALKLYSNEG 667 (962)
T ss_pred HHHHhhccc
Confidence 555554433
No 257
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.00 E-value=2.6e+02 Score=25.24 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeeeCChHHHHHHHHhcCCCc--eEEee
Q 017020 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL--NIDLV 51 (379)
Q Consensus 2 L~~GF~~di~~Il~~~p~~~Q~llfSAT~p~~i~~l~~~~l~~p~--~i~~~ 51 (379)
+|-||.+=+++|-+ .+.+++.+|+-|.+-|..+.+.+..... .++++
T Consensus 74 Idp~fKef~e~ike---~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~ 122 (220)
T COG4359 74 IDPGFKEFVEWIKE---HDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIV 122 (220)
T ss_pred cCccHHHHHHHHHH---cCCCEEEEeCCCchHHHHHHHhhccccceeeeEEe
Confidence 45677777777766 5789999999999999999999886432 34444
No 258
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.94 E-value=91 Score=32.35 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=51.8
Q ss_pred CcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHH-HHHHHhcccCCceeEEEeccc-------cccCCCCCc
Q 017020 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQ-RERTLNGFRQGKFTVLVATDV-------AARGLDIPN 155 (379)
Q Consensus 89 ~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~-R~~~~~~F~~g~~~iLVaTdv-------~~rGiDip~ 155 (379)
-+|+|.++|+.-+..++..+.. ++.|+.+.|.-+-+. -.+....-....++|||||+- .-.|+|+.+
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4899999999999999888763 566777777655433 333444444457899999983 357888888
Q ss_pred cceEE
Q 017020 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
..+.|
T Consensus 296 LrfLV 300 (620)
T KOG0350|consen 296 LRFLV 300 (620)
T ss_pred ceEEE
Confidence 88655
No 259
>PRK01172 ski2-like helicase; Provisional
Probab=32.63 E-value=80 Score=33.94 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=52.0
Q ss_pred ccHHHH-HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 72 TSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 72 ~~k~~~-L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
..|..+ ...++.....+.++|+.++++.-|.+.++.+.. +..+...+|+....... + +..+|+|+|+-
T Consensus 48 SGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-----~--~~~dIiv~Tpe 120 (674)
T PRK01172 48 AGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPDF-----I--KRYDVVILTSE 120 (674)
T ss_pred chHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChhh-----h--ccCCEEEECHH
Confidence 345433 223334443467899999999999988887753 56788888987643221 1 24589999972
Q ss_pred -----cccC-CCCCccceEE
Q 017020 147 -----AARG-LDIPNVDLII 160 (379)
Q Consensus 147 -----~~rG-iDip~v~~VI 160 (379)
..++ ..+.++++||
T Consensus 121 k~~~l~~~~~~~l~~v~lvV 140 (674)
T PRK01172 121 KADSLIHHDPYIINDVGLIV 140 (674)
T ss_pred HHHHHHhCChhHHhhcCEEE
Confidence 2222 2356778777
No 260
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.31 E-value=62 Score=32.10 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=42.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
+.-++||++|++-+-.+++.+.- +..+..+.|+|+.-.....+. ....++|||+
T Consensus 75 giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~----~rPHvVvatP 133 (442)
T KOG0340|consen 75 GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILS----DRPHVVVATP 133 (442)
T ss_pred cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcc----cCCCeEecCc
Confidence 34689999999999999998852 578999999987766555442 4567889887
No 261
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=32.07 E-value=1.1e+02 Score=24.61 Aligned_cols=38 Identities=5% Similarity=0.006 Sum_probs=28.9
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CCc-EEEeeCCCCH
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 123 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~~-v~~lhg~m~~ 123 (379)
.+..++++||++-..+...+..|.. ++. +..+.|++..
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4567899999998888888888875 664 6668888653
No 262
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=31.71 E-value=1.5e+02 Score=32.91 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc
Q 017020 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (379)
Q Consensus 78 L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv 146 (379)
+..++... .+..+-|.++|..-|..-++.+.. ++.+..+.|+++..+|...+. .+|+++|+.
T Consensus 113 lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 113 LPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 34444555 356788899998877777777652 688999999999999988864 678898864
No 263
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.46 E-value=1.6e+02 Score=25.63 Aligned_cols=67 Identities=10% Similarity=0.204 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCC-CcEEEEecccccHHHHHHHHhcC---CcE-EEeeCCCCHHHHHHHHhcccCCceeEE
Q 017020 75 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI---IAS-EALHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 75 ~~~L~~ll~~~~~~-~~~IIF~~t~~~~~~l~~~L~~~---~~v-~~lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
.+.+..++...... .++-++-.+...++.++..|... +.+ ...||-++..+.+.+++..+....+++
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIV 105 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 34555666544333 34444455666667788888763 344 456777888889999998887665544
No 264
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=31.25 E-value=1.1e+02 Score=24.44 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCCcEEEEecc-cccHHHHHHHHhc-CCc-EEEeeCCCC
Q 017020 87 KGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDIS 122 (379)
Q Consensus 87 ~~~~~IIF~~t-~~~~~~l~~~L~~-~~~-v~~lhg~m~ 122 (379)
++.++++||++ -..+...+..|.. ++. +..+-|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46789999998 4777777777764 654 778888874
No 265
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=30.99 E-value=76 Score=25.18 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHH--cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 78 LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 78 L~~ll~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
+...+... .++.++++||++-..+...+..|.. ++ .+..+.|++.
T Consensus 66 ~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 66 LRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred HHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 34444433 2467899999987677777777764 66 4777788763
No 266
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=30.97 E-value=84 Score=23.00 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=28.6
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-C-CcEEEeeCCCC
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~-~~v~~lhg~m~ 122 (379)
.+..++|+||++...+..++..|.. + ..+..+-|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3567999999998888888988875 3 45677777763
No 267
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=30.46 E-value=48 Score=25.75 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.1
Q ss_pred CCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
+..++++||++-..+...+..|.. |+ .+..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 357899999997777777777764 66 4677778763
No 268
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.82 E-value=51 Score=24.07 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.1
Q ss_pred CCCCChhHHHHHHhhhCCCCCC
Q 017020 299 RGFMSARSVMGFLSDVYPTAAD 320 (379)
Q Consensus 299 ~~~~~~~~i~~~~~~~~~~~~~ 320 (379)
.+++.|+++|.++|....++.+
T Consensus 41 ~~G~dpr~VW~AlC~~~dVP~~ 62 (63)
T PF11248_consen 41 EAGVDPRDVWRALCDAFDVPEE 62 (63)
T ss_pred HcCCCHHHHHHHHHHHcCCCCC
Confidence 4578999999999999988764
No 269
>PRK00254 ski2-like helicase; Provisional
Probab=29.26 E-value=1e+02 Score=33.52 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=48.0
Q ss_pred CCCcEEEEecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-----cccC-CCCCcc
Q 017020 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-----~~rG-iDip~v 156 (379)
.+.++|+.+++++-+.+.+..+.. ++.+..++|+.+...+ . .+..+|+|+|+- ...+ ..+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~-----~~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--W-----LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--h-----hccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467899999999999988877753 6788999999875432 1 145789999952 2222 345678
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 140 ~lvV 143 (720)
T PRK00254 140 KLVV 143 (720)
T ss_pred CEEE
Confidence 8777
No 270
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=29.20 E-value=2e+02 Score=31.62 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=40.4
Q ss_pred cCCCcEEEEecccccHHHHHHHHh---cCCcEEEeeCCCCHHHHHHHHhccc-CCceeEEEecc
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALT---SIIASEALHGDISQHQRERTLNGFR-QGKFTVLVATD 145 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~---~~~~v~~lhg~m~~~~R~~~~~~F~-~g~~~iLVaTd 145 (379)
+.++|-||.|+--- .......+. ..+.+..+||+ +++|....+.+- .|...|+|+|-
T Consensus 215 ~~~GPfLVi~P~St-L~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 215 GIPGPFLVIAPKST-LDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCCeEEEeeHhh-HHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 44789999998543 223333333 36889999999 688887777665 46889999884
No 271
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=29.00 E-value=3.9e+02 Score=28.77 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=69.0
Q ss_pred cCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCC--c-EEEe--------------------eCCC--C-
Q 017020 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII--A-SEAL--------------------HGDI--S- 122 (379)
Q Consensus 69 ~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~--~-v~~l--------------------hg~m--~- 122 (379)
.....|.-++..+.... +.++||.+++...++.++..|...+ . +..+ +... +
T Consensus 40 l~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~ 117 (652)
T PRK05298 40 VTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINE 117 (652)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCCh
Confidence 34456776677666543 5789999999999999999886421 1 3222 1111 1
Q ss_pred --HHHHHHHHhcccCCceeEEEeccccccCCCCCc----cceEEecCCCCChhHHHHHHh
Q 017020 123 --QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (379)
Q Consensus 123 --~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDip~----v~~VI~~~~P~~~~~yiqR~G 176 (379)
..+|..++..+.++...|+|||-.+..++=-|+ ..+.+..+-..+.+.+..+.-
T Consensus 118 ~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~ 177 (652)
T PRK05298 118 EIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLV 177 (652)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHH
Confidence 346888899888776667777765556665443 334666677777777766554
No 272
>PLN02160 thiosulfate sulfurtransferase
Probab=28.16 E-value=94 Score=25.99 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=29.7
Q ss_pred cCCCcEEEEecccccHHHHHHHHhc-CC-cEEEeeCCCCH
Q 017020 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 123 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~L~~-~~-~v~~lhg~m~~ 123 (379)
.++.++++||.+-..+...+..|.. |+ .+..+.|++..
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 4567899999999888888888875 66 47778888643
No 273
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=27.45 E-value=81 Score=24.04 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=25.2
Q ss_pred CCcEEEEecc--cccHHHHHHHHhc-CC-cEEEeeCCCC
Q 017020 88 GGKTIVFTQT--KRDADEVSLALTS-II-ASEALHGDIS 122 (379)
Q Consensus 88 ~~~~IIF~~t--~~~~~~l~~~L~~-~~-~v~~lhg~m~ 122 (379)
..++++||.+ +..+...+..|.. ++ .+..+.|||.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 6789999998 3335677777764 54 5778888874
No 274
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=27.27 E-value=3.7e+02 Score=24.70 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=57.5
Q ss_pred CCCcEEEEecc------------cccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccC---CceeEEEeccccccC
Q 017020 87 KGGKTIVFTQT------------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAARG 150 (379)
Q Consensus 87 ~~~~~IIF~~t------------~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~---g~~~iLVaTdv~~rG 150 (379)
+.+.+||+.|. ..+++.++..|+. ++.| ..+-+++..+=.+.+..|.+ ....++|+. .++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 35677888774 2457788888876 7766 56788898888888888874 233344333 67778
Q ss_pred CCCCccceEEecC-CCCChhHHHHHHh
Q 017020 151 LDIPNVDLIIHYE-LPNDPETFVHRSG 176 (379)
Q Consensus 151 iDip~v~~VI~~~-~P~~~~~yiqR~G 176 (379)
.. ++++-.| -+.+.++.++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 64 6666666 5666777777764
No 275
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.40 E-value=2.3e+02 Score=24.59 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcC-CCcEEEEecccccHHHHHHHHhc---CCcEEE-eeCCCCHHHHHHHHhcccCCceeEE
Q 017020 75 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS---IIASEA-LHGDISQHQRERTLNGFRQGKFTVL 141 (379)
Q Consensus 75 ~~~L~~ll~~~~~-~~~~IIF~~t~~~~~~l~~~L~~---~~~v~~-lhg~m~~~~R~~~~~~F~~g~~~iL 141 (379)
.+.+..+++.... +.++-++-.+.+.++.+++.|.. ++.+.. .||-+...+...+++..+....+++
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 3455666665533 34555555666777777778875 455444 7888888887777777776555444
No 276
>PF13245 AAA_19: Part of AAA domain
Probab=26.40 E-value=82 Score=23.55 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=29.2
Q ss_pred cCCccHHHHHHHHHHHHc-----CCCcEEEEecccccHHHHHHHH
Q 017020 69 TTATSKRTILSDLITVYA-----KGGKTIVFTQTKRDADEVSLAL 108 (379)
Q Consensus 69 ~~~~~k~~~L~~ll~~~~-----~~~~~IIF~~t~~~~~~l~~~L 108 (379)
++...|...+...+..+- .+.+++|.+.|+..++++.+.+
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344678766655554331 1678999999999999999988
No 277
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=26.26 E-value=3.2e+02 Score=25.20 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=57.1
Q ss_pred CCCcEEEEeccc-----------ccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCC----ceeEEEeccccccC
Q 017020 87 KGGKTIVFTQTK-----------RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARG 150 (379)
Q Consensus 87 ~~~~~IIF~~t~-----------~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g----~~~iLVaTdv~~rG 150 (379)
+.+.+||+.|.. .+++.++..|+. ++.+ .++-+++..+=.+.+++|.+. ...++|+- .++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 456788888864 368889999986 7766 467889999989999888763 24455554 67777
Q ss_pred CCCCccceEEecCC-CCChhHHHHHH
Q 017020 151 LDIPNVDLIIHYEL-PNDPETFVHRS 175 (379)
Q Consensus 151 iDip~v~~VI~~~~-P~~~~~yiqR~ 175 (379)
. .++|+-.|- +.+.++.....
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 255665554 44566655555
No 278
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=25.96 E-value=2.2e+02 Score=27.20 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCC
Q 017020 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (379)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiD 152 (379)
+-.++-.+.++.+. .--+|+|...+.+..|-..+.-.-+...+|-.-.++....+++....|+. |.+.+|..-=||.
T Consensus 11 Nl~Dit~Ral~~L~--~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~IS 87 (276)
T TIGR00096 11 NLEDITRRALELLA--CVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLIS 87 (276)
T ss_pred CHHHHhHHHHHHHH--hCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcC
Confidence 33344444444442 23489999988888877777543455677776666777777888888865 8888998888888
Q ss_pred CCccce
Q 017020 153 IPNVDL 158 (379)
Q Consensus 153 ip~v~~ 158 (379)
-|+-.+
T Consensus 88 DPG~~L 93 (276)
T TIGR00096 88 DPGHLL 93 (276)
T ss_pred CccHHH
Confidence 886554
No 279
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=25.92 E-value=4.5e+02 Score=24.52 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred EEEcCCccHHHHHHHHHHHHcCCCcEEEEec-ccccHHHHHHHHhc-CCcEEEee
Q 017020 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALH 118 (379)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~-t~~~~~~l~~~L~~-~~~v~~lh 118 (379)
.+.+...+|.++|..++...+...+.|||.. +.+....+...+.. ++....+|
T Consensus 155 Ilft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 155 ILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 4556677899999999998876667788875 55666777777764 55555444
No 280
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=25.82 E-value=6.8e+02 Score=25.02 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=91.3
Q ss_pred EEEEeeeCChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHHHH-HcCCCcEEEEecccccH
Q 017020 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDA 101 (379)
Q Consensus 23 ~llfSAT~p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~ 101 (379)
.+-++.|+++.-+..+...+.. .. .........+....|.+.+...+.. .+.++.+.|-.+..+.|
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q~------i~-------~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVc 157 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQY------IK-------QKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVC 157 (441)
T ss_pred eeeeccccChhHHHHHHHHHHH------HH-------hcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccch
Confidence 7788999887666655544321 10 1112223334445777777766653 45688999999999999
Q ss_pred HHHHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-ccccCCCCCccceEEe--cC-CCCChhHHHHH
Q 017020 102 DEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPNVDLIIH--YE-LPNDPETFVHR 174 (379)
Q Consensus 102 ~~l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-v~~rGiDip~v~~VI~--~~-~P~~~~~yiqR 174 (379)
-+++..|.. +..+..+||+-++. |+ ..++|||. -+-|=-+ ..+++|. .| +|.+.+..+|-
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~--------fr---~plvVaTtHQLlrFk~--aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSY--------FR---APLVVATTHQLLRFKQ--AFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchh--------cc---ccEEEEehHHHHHHHh--hccEEEEeccccccccCCHHHHH
Confidence 999999985 46789999997664 33 35777774 2222211 2233332 22 68888888888
Q ss_pred HhhccCCCCCceEEEEeChhhHHHHH
Q 017020 175 SGRTGRAGKEGTAILMFTSSQRRTVR 200 (379)
Q Consensus 175 ~GRtgR~G~~g~~i~l~~~~e~~~l~ 200 (379)
+-+-+|-- .|.-+.+.........+
T Consensus 225 Av~~ark~-~g~~IylTATp~k~l~r 249 (441)
T COG4098 225 AVKKARKK-EGATIYLTATPTKKLER 249 (441)
T ss_pred HHHHhhcc-cCceEEEecCChHHHHH
Confidence 77777753 34444443333333333
No 281
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=25.74 E-value=97 Score=34.71 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=42.2
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd 145 (379)
+.-+||-|+|++.+.++.+.+.. ++.+.+.+|+-...+. +...+.| ..|+|||.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC-CceEEecc
Confidence 44679999999999999887752 6778888888766554 5556678 78999997
No 282
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.44 E-value=2.8e+02 Score=26.36 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeccc-ccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCC
Q 017020 74 KRTILSDLITVYAKGGKTIVFTQTK-RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (379)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IIF~~t~-~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGi 151 (379)
..++|.+.+..+...+.+|||.+.+ ..+++|++.+.- .-.-.++||....-.| . .|+.+++|-.+...+-+
T Consensus 165 N~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~-----~--~Gkk~~~ies~~s~eeL 237 (300)
T COG4152 165 NVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR-----S--FGKKRLVIESDLSLEEL 237 (300)
T ss_pred hHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH-----h--cCCceEEEeccCchHHH
Confidence 4567777777776789999999865 678888887753 3345567888533222 2 37778888877655543
Q ss_pred -CCCccceEEe
Q 017020 152 -DIPNVDLIIH 161 (379)
Q Consensus 152 -Dip~v~~VI~ 161 (379)
++|++..+..
T Consensus 238 ~~ipgi~~~~~ 248 (300)
T COG4152 238 ANIPGILKITE 248 (300)
T ss_pred hcCCCceeeee
Confidence 5666655543
No 283
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=24.86 E-value=2.5e+02 Score=24.64 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeeeC-ChHHHHHHHHhcCCCceEEeecccccccccceEEEEEEcCCccHHHHHHHHH
Q 017020 5 GFEEDVELILENLP-PKRQSMLFSATM-PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (379)
Q Consensus 5 GF~~di~~Il~~~p-~~~Q~llfSAT~-p~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (379)
.|.+|+..||+.+. .+.++.+-|-|- |....++.+.+--+..... ......-... ....+..|...+..+.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~-----~~~~~~~F~~--~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGD-----GVPLIEYFDY--LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C---------------CCECE--EEESSS-HHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccc-----cccchhhcch--hheecCchHHHHHHHH
Confidence 57889999999886 477888888885 4455555554322200000 0011111122 2333458888888888
Q ss_pred HHHcCC-CcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccC
Q 017020 83 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 135 (379)
Q Consensus 83 ~~~~~~-~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~ 135 (379)
+..+-. ...|.|=+.....+.+.. -|..+.....||+.+.=++-+++|++
T Consensus 118 ~~tgI~y~eMlFFDDe~~N~~~v~~---lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDESRNIEVVSK---LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp HHH---GGGEEEEES-HHHHHHHHT---TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred HhcCCChhHEEEecCchhcceeeEe---cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 765433 344444444444433332 25555555678998888888877753
No 284
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=24.80 E-value=1.8e+02 Score=25.15 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=51.0
Q ss_pred CCccHHHHHHHHHHH-HcCCCcEEEEecccccHHHHHHHHhcCCc-EEEeeCCCCHHHHHHHHhcccCCceeEEEecccc
Q 017020 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (379)
Q Consensus 70 ~~~~k~~~L~~ll~~-~~~~~~~IIF~~t~~~~~~l~~~L~~~~~-v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~ 147 (379)
....+...+.+|+.. +..+.+++|.|++...++.|-+.|=..-. ...=||-.... ......|+++++.
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~---------~~a~~PV~L~~~~- 79 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDP---------QPEKQPIYITDEL- 79 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCC---------CCCCCCEEEecCC-
Confidence 556788888888854 46688999999999999988888854211 22224431111 0134568887532
Q ss_pred ccCCCCCccceEEecCC
Q 017020 148 ARGLDIPNVDLIIHYEL 164 (379)
Q Consensus 148 ~rGiDip~v~~VI~~~~ 164 (379)
-+.++.++.||.+.
T Consensus 80 ---~~p~~~~vLiNL~~ 93 (154)
T PRK06646 80 ---QNPNNASVLVIISP 93 (154)
T ss_pred ---CCCCCCCEEEECCC
Confidence 12225566888765
No 285
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=24.46 E-value=1.9e+02 Score=32.07 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=44.6
Q ss_pred cEEEEecccccHHHHHHHHh-----cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccc-c-----ccC--CCCCcc
Q 017020 90 KTIVFTQTKRDADEVSLALT-----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-A-----ARG--LDIPNV 156 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~-----~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv-~-----~rG--iDip~v 156 (379)
.||-.++-++-...+-..|. .++.+..=|||.+|.+|.+.. ....+|||+|+- + +.. =.+.+|
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~----~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML----KNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc----CCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 34444555655556665554 278899999999999998554 456789999982 1 111 124678
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
.+||
T Consensus 151 r~VI 154 (814)
T COG1201 151 RYVI 154 (814)
T ss_pred cEEE
Confidence 8888
No 286
>PTZ00424 helicase 45; Provisional
Probab=24.04 E-value=2.7e+02 Score=27.38 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=46.2
Q ss_pred CCcEEEEecccccHHHHHHHHhc-----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc------ccCCCCCcc
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~------~rGiDip~v 156 (379)
..++||.+++++-+.++...+.. ...+..+.|+....+. .+.+.++ .+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcCC-CCEEEECcHHHHHHHHhCCcccccc
Confidence 45799999999988887776653 3456667788765433 2333333 5799999732 234567778
Q ss_pred ceEE
Q 017020 157 DLII 160 (379)
Q Consensus 157 ~~VI 160 (379)
++||
T Consensus 172 ~lvV 175 (401)
T PTZ00424 172 KLFI 175 (401)
T ss_pred cEEE
Confidence 8777
No 287
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=23.84 E-value=3e+02 Score=23.12 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.4
Q ss_pred CChhHHHHHHhhc
Q 017020 166 NDPETFVHRSGRT 178 (379)
Q Consensus 166 ~~~~~yiqR~GRt 178 (379)
.+..+++||+|+.
T Consensus 7 I~LpSlIHRig~~ 19 (128)
T PF12614_consen 7 IPLPSLIHRIGRE 19 (128)
T ss_pred eccHHHHHHhhHH
Confidence 3567999999984
No 288
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=23.23 E-value=2.4e+02 Score=31.93 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=54.4
Q ss_pred ceeEEEeccccccCCCCCccceEEecCCCCChhHHHHHHhhccCCC--CCc-----e---EEEEeChhhHHHHHHHHHHh
Q 017020 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEG-----T---AILMFTSSQRRTVRSLERDV 206 (379)
Q Consensus 137 ~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yiqR~GRtgR~G--~~g-----~---~i~l~~~~e~~~l~~le~~~ 206 (379)
..+.+++-+.+..|-|-|++-.++-..-..+...-.|.+||.-|.- ..| . --++++..+....+.|++..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999998888888888899999998842 112 1 22345666777777766655
No 289
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=23.19 E-value=1.2e+02 Score=24.66 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=26.8
Q ss_pred cCCCcEEEEec-ccccHHHHHHHHhc-------------CC-cEEEeeCCCC
Q 017020 86 AKGGKTIVFTQ-TKRDADEVSLALTS-------------II-ASEALHGDIS 122 (379)
Q Consensus 86 ~~~~~~IIF~~-t~~~~~~l~~~L~~-------------~~-~v~~lhg~m~ 122 (379)
.+..+++++|. +-..+...+..|.. ++ .+..+.||+.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 34678999996 76677777777764 33 5788889875
No 290
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=22.71 E-value=1.7e+02 Score=32.66 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=60.3
Q ss_pred CCCcEEEEecccccHHH----HHHHHhc---CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-cc----ccCCCC-
Q 017020 87 KGGKTIVFTQTKRDADE----VSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VA----ARGLDI- 153 (379)
Q Consensus 87 ~~~~~IIF~~t~~~~~~----l~~~L~~---~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-v~----~rGiDi- 153 (379)
+..++|++-+|++-++. +.+.+.. ++.+..++|+.++++|+.+ ..+..+||++++ ++ -|.-|-
T Consensus 114 ~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~----~~~pp~IllTNpdMLh~~llr~~~~~ 189 (851)
T COG1205 114 PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAI----IRNPPDILLTNPDMLHYLLLRNHDAW 189 (851)
T ss_pred cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHH----HhCCCCEEEeCHHHHHHHhccCcchH
Confidence 34578999999876554 4444443 3678999999999999844 457788999885 32 222222
Q ss_pred ----CccceEEe-----cCCC--CChhHHHHHHhhccCCCCCceEEEE
Q 017020 154 ----PNVDLIIH-----YELP--NDPETFVHRSGRTGRAGKEGTAILM 190 (379)
Q Consensus 154 ----p~v~~VI~-----~~~P--~~~~~yiqR~GRtgR~G~~g~~i~l 190 (379)
.++.+||- |.-- .++.-.+-|..|-.|.+...-.++.
T Consensus 190 ~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~ 237 (851)
T COG1205 190 LWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIIC 237 (851)
T ss_pred HHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEE
Confidence 24555552 2211 2555566677666554433333333
No 291
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=22.46 E-value=47 Score=36.32 Aligned_cols=89 Identities=19% Similarity=0.292 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEeccccccCCCC
Q 017020 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (379)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~~rGiDi 153 (379)
+.+.+.+++.... .++|+.-....+.+...+ ..|+.+...+...++.++... +.++...+|..+
T Consensus 432 ~~~~~~~~~~~~~----~~~~~v~itty~~l~~~~-------~~~~~l~~~~~~~~v~DEa~~-----ikn~~s~~~~~l 495 (866)
T COG0553 432 KREALRDLLKLHL----VIIFDVVITTYELLRRFL-------VDHGGLKKIEWDRVVLDEAHR-----IKNDQSSEGKAL 495 (866)
T ss_pred HHHHHHHHhhhcc----cceeeEEechHHHHHHhh-------hhHHHHhhceeeeeehhhHHH-----HhhhhhHHHHHH
Confidence 3555666655432 677777766666666543 223333333333333333222 666677777777
Q ss_pred CccceEEecCCCCChhHHHHHHhhccC
Q 017020 154 PNVDLIIHYELPNDPETFVHRSGRTGR 180 (379)
Q Consensus 154 p~v~~VI~~~~P~~~~~yiqR~GRtgR 180 (379)
..+...+.+++|.+| ..+|+|+-.+
T Consensus 496 ~~~~~~~~~~LtgTP--len~l~eL~s 520 (866)
T COG0553 496 QFLKALNRLDLTGTP--LENRLGELWS 520 (866)
T ss_pred HHHhhcceeeCCCCh--HhhhHHHHHH
Confidence 777777888888888 4556655444
No 292
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=21.28 E-value=1.8e+02 Score=29.14 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCcEEEE---ecccccHHHHHHHHhc----CCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecccc
Q 017020 88 GGKTIVF---TQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (379)
Q Consensus 88 ~~~~IIF---~~t~~~~~~l~~~L~~----~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTdv~ 147 (379)
+..+||+ +.|-.+....++.|.. .+.+.+.||-++ ...+++.+.|.+|.+.-+|+||..
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 4567776 3455555566666763 366888999999 777888888999988899999975
No 293
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.27 E-value=1e+02 Score=31.71 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=49.4
Q ss_pred cEEEEecccccHHHHHHHHh------cCCcEEEeeCCCCHHHHHHHHhcccCCceeEEEecc-----cccc---CCCCCc
Q 017020 90 KTIVFTQTKRDADEVSLALT------SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR---GLDIPN 155 (379)
Q Consensus 90 ~~IIF~~t~~~~~~l~~~L~------~~~~v~~lhg~m~~~~R~~~~~~F~~g~~~iLVaTd-----v~~r---GiDip~ 155 (379)
-++|..+|++-+.++.+-+. ..+.+..+-||++-++ -++.|++...+|||+|+ ++.+ ++|+-+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 57999999988877665543 2567888889966544 46677888889999997 3333 566667
Q ss_pred cceEE
Q 017020 156 VDLII 160 (379)
Q Consensus 156 v~~VI 160 (379)
++++|
T Consensus 158 Le~LV 162 (567)
T KOG0345|consen 158 LEILV 162 (567)
T ss_pred cceEE
Confidence 77766
No 294
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=21.08 E-value=1.6e+02 Score=30.05 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=53.9
Q ss_pred EEEEcCCccHHHHHHHHHHHHcCCCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCCCHHHHHHHHhcccCC--ceeEE
Q 017020 65 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVL 141 (379)
Q Consensus 65 ~~~~~~~~~k~~~L~~ll~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m~~~~R~~~~~~F~~g--~~~iL 141 (379)
.|+..|...-..+...+-.... ++-+|||.+-..-...-...|.. ..++..+.+.|+..+|.+++.++..- .+++|
T Consensus 39 VyVsMPTGaGKSLCyQLPaL~~-~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 39 VYVSMPTGAGKSLCYQLPALVH-GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred EEEeccCCCchhhhhhchHHHh-CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 3444443332233333333333 46889999887666555555544 78999999999999999999999764 56788
Q ss_pred Eeccc
Q 017020 142 VATDV 146 (379)
Q Consensus 142 VaTdv 146 (379)
--|+-
T Consensus 118 YITPE 122 (641)
T KOG0352|consen 118 YITPE 122 (641)
T ss_pred EEchh
Confidence 76664
No 295
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=21.01 E-value=1.7e+02 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=26.6
Q ss_pred cCCCcEEEEecccccHHHHHHH-----Hhc-CC-cEEEeeCCCCH
Q 017020 86 AKGGKTIVFTQTKRDADEVSLA-----LTS-II-ASEALHGDISQ 123 (379)
Q Consensus 86 ~~~~~~IIF~~t~~~~~~l~~~-----L~~-~~-~v~~lhg~m~~ 123 (379)
.....+|+||++.......+.. |.. ++ .+..+.||+..
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 3456789999777666666555 554 66 78888898643
No 296
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown]
Probab=20.72 E-value=2.2e+02 Score=26.74 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=47.2
Q ss_pred CeEEEEEeeCCcccCCCCChhHHHHHHhhhCCCCCCccccEEeeeCCceeeeecchhhHHHHhhhhcccCcceEeeeehh
Q 017020 285 GWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVCIDTVILLYFYASVRLGLFNTKSVIWLTYRF 364 (379)
Q Consensus 285 ~~~~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (379)
+.+-+-|+--.. =.-++-++++|.+.+ .|++.+..|+|-+.+..- |+.+--=-.......++..++-.|+...-=+
T Consensus 86 ~l~l~eI~y~~k--F~~l~H~~~LGtll~-lGikRe~~GDIiv~~~~a-Qliv~~~~~~f~~~~Ltkig~~~V~l~ei~~ 161 (257)
T COG2302 86 ELTLLEISYASK--FVSLTHRDILGTLLS-LGIKREKFGDIIVEGEGA-QLIVATELADFFLLHLTKIGKAPVKLEEIDL 161 (257)
T ss_pred ceEEEEEEcccc--cccccHHHHHHHHHh-ccCcHHhhccEEEeCCee-EEEEehhHHHHHHHHHHhhcCcceEEEEcCH
Confidence 344444544331 233667899999999 999999999998887443 3322211112223356777777777665444
Q ss_pred hH
Q 017020 365 RE 366 (379)
Q Consensus 365 ~~ 366 (379)
.+
T Consensus 162 ~~ 163 (257)
T COG2302 162 EE 163 (257)
T ss_pred HH
Confidence 43
No 297
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=20.20 E-value=1.4e+02 Score=23.82 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.3
Q ss_pred CCcEEEEecccccHHHHHHHHhc-CCcEEEeeCCC
Q 017020 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (379)
Q Consensus 88 ~~~~IIF~~t~~~~~~l~~~L~~-~~~v~~lhg~m 121 (379)
+.++++||++-..+...+..|.. ++......|++
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 45799999998777888888864 77655556775
Done!