BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017022
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 146/299 (48%), Positives = 190/299 (63%), Gaps = 9/299 (3%)
Query: 71 SEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFA 130
S+++LS FL DFL GGV+AA+SKTA APIERVKLL+Q Q K YKGI DC
Sbjct: 1 SDQALS-FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVV 58
Query: 131 RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDG-YWKWFAGNXXX 189
R K++G LS WRGN ANVIRYFPTQALNFAFKD +K++F DR +W++FAGN
Sbjct: 59 RIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLAS 118
Query: 190 XXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGF 249
FVY LD+ARTRLA D K +R+F GL + K KSDG+ GLY+GF
Sbjct: 119 GGAAGATSLCFVYPLDFARTRLAAD--VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 250 SISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVRR 309
++S GII+YR YFG+YD+ K +L D + S+++ +T AGL SYP DTVRR
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKG-MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRR 235
Query: 310 RMMMTSGEA---VKYKSSLHAFQEIIKNEGTKSLFKGAGANILRXXXXXXXXXXYDKLQ 365
RMMM SG + Y ++ +++I K+EG K+ FKGA +N+LR YD+++
Sbjct: 236 RMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIK 294
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 124/282 (43%), Gaps = 28/282 (9%)
Query: 80 VDFLMGGVSAAVSKTAAAPIE--RVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEG 137
V FL G +A ++ P++ +V+L IQ + + + S Y+G+ V+ EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 138 ILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYW-KWFAGNXXXXXXXXXX 196
SL+ G A + R ++ D K+ + + G + AG+
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA-- 120
Query: 197 XXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFS------ 250
D + R A+A GG R++ ++ YK + +GI GL++G S
Sbjct: 121 ---VAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174
Query: 251 --ISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVR 308
++C ++ Y + + LK ++TD + F ++F G+ T+ A P+D V+
Sbjct: 175 AIVNCAELVTYDLIKDTL---LKANLMTDDLPCHFTSAFGAGFCTTVIAS----PVDVVK 227
Query: 309 RRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 350
R M ++ +Y S+ H +++ EG ++ +KG + LR
Sbjct: 228 TRYMNSA--LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
>pdb|2Z5W|A Chain A, Tbcla, A Recombinant Spore Surface Protein From Bacillus
Anthracis
pdb|3AB0|A Chain A, Crystal Structure Of Complex Of The Bacillus Anthracis
Major Spore Surface Protein Bcla With Scfv Antibody
Fragment
pdb|3AB0|D Chain D, Crystal Structure Of Complex Of The Bacillus Anthracis
Major Spore Surface Protein Bcla With Scfv Antibody
Fragment
Length = 136
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 53 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMG--GVSAAVSKTAAAPIERVKL 104
GTG +L+S +PI +QA ++ + + LV+ ++ G+S A+ +A+ IE+V L
Sbjct: 83 GTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASIIIEKVAL 136
>pdb|2I79|A Chain A, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|B Chain B, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|C Chain C, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|D Chain D, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|E Chain E, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|F Chain F, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
Length = 172
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 37 SFVNRGSQNSFWAASQGTGLALVSPVSPIFV--QAPSEKSLSSFLVDFLMGGVSAAVSKT 94
+F+NR S + + + G G+ L S IF+ QA S+ ++ L+ FL G ++ V+ T
Sbjct: 20 AFLNRVSLETDFTSLDGDGILLTSEEMEIFLNKQASSDNQIT--LLAFLNGKIAGIVNIT 77
Query: 95 A 95
A
Sbjct: 78 A 78
>pdb|3TWI|A Chain A, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|B Chain B, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|C Chain C, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 160
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 53 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMG--GVSAAVSKTAAAPIERVKLLIQN 108
GTG +L+S +PI +QA ++ + + LV+ ++ G+S A+ +A+ IE+V +N
Sbjct: 103 GTGSSLISLGAPIVIQAITQITTNPSLVEVIVTGLGLSLALGTSASIIIEKVAFRFRN 160
>pdb|3TYJ|A Chain A, Bacillus Collagen-Like Protein Of Anthracis P159s Mutant
Length = 155
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 53 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMG--GVSAAVSKTAAAPIERV 102
GTG +L+S +PI +QA ++ + + LV+ ++ G+S A+ +A+ IE+V
Sbjct: 103 GTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASIIIEKV 154
>pdb|2R6Q|A Chain A, Crystal Structure Of Bcla-Island Construct
Length = 138
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 53 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMG--GVSAAVSKTAAAPIERV 102
GTG +L+S +PI +QA ++ + + LV+ ++ G+S A+ +A+ IE+V
Sbjct: 86 GTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASIIIEKV 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,253,720
Number of Sequences: 62578
Number of extensions: 416848
Number of successful extensions: 835
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 12
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)