Query 017022
Match_columns 379
No_of_seqs 273 out of 2701
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.3E-57 8E-62 419.0 29.5 289 76-368 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.2E-56 4.1E-61 415.3 24.2 281 81-370 4-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 9.4E-42 3.2E-46 315.4 11.2 220 36-276 69-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 5.1E-41 1.7E-45 309.7 12.5 224 36-274 72-297 (297)
5 3f2e_A SIRV coat protein; four 22.2 46 0.0016 22.6 2.0 35 318-352 5-43 (100)
6 3tgu_G UQCRQ, mitochondrial ub 18.7 88 0.003 21.6 2.9 36 241-276 33-68 (81)
7 2acm_A Mucin-1; auto-catalytic 18.3 35 0.0012 21.9 0.6 20 123-142 40-59 (66)
8 2bnk_A Early protein GP16.7; D 10.1 1.5E+02 0.0051 18.9 1.8 45 299-344 20-65 (67)
9 2l5r_A Antimicrobial peptide a 9.6 1.5E+02 0.0052 14.8 1.4 13 336-348 9-21 (26)
10 3vjj_A P9-1; 3.00A {Rice black 8.5 1.6E+02 0.0055 25.4 2.0 35 296-337 274-308 (368)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.3e-57 Score=419.01 Aligned_cols=289 Identities=53% Similarity=0.881 Sum_probs=243.6
Q ss_pred hhhHHHHHHhhHHHHHHHhhcCcHHHHHHHHHcCchhhhcCCCCCCCCchHHHHHHHhhccccccccccchhhHHhHhHH
Q 017022 76 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPT 155 (379)
Q Consensus 76 ~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~ 155 (379)
.+.+..+++|++||+++.++++|+|+||||+|++..... ......|+++++++++++++||++|||||+.+++++.+|+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 357789999999999999999999999999999864211 1112358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccC-CCCCCchhhhHHHhHHHhHHhHHHHhhHchHHHHHHHHhcccchhhcCCCCCCCcHHHHHH
Q 017022 156 QALNFAFKDYFKRLFNFK-KDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYK 234 (379)
Q Consensus 156 ~~~~f~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~ 234 (379)
.+++|.+||.+|+.+... ...+.........+++|++||++++++++|+|+||+|+|++... ......|++++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~ 161 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCIT 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHHHHH
Confidence 999999999999954332 22222223456789999999999999999999999999998531 122457899999999
Q ss_pred HHHhhcCccccccchhhhhhHHHhhhhHHHHHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHhhhcHHHHHHHhhccc
Q 017022 235 KTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMT 314 (379)
Q Consensus 235 ~i~~~~G~~gly~G~~~~l~r~~~~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~ag~~~~~~t~Pldviktr~q~~ 314 (379)
+|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.+. .+.+....++++.++|++++++++|+||||+|||.+
T Consensus 162 ~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~ 240 (297)
T 1okc_A 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 240 (297)
T ss_dssp HHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999987543 345567789999999999999999999999999987
Q ss_pred CCC---CcccCCHHHHHHHHHHhhchhhhccchHHHHHHHhhhHHHHHHHHHHHHHH
Q 017022 315 SGE---AVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLVL 368 (379)
Q Consensus 315 ~~~---~~~~~~~~~~~~~i~~~eG~~gly~G~~~~l~~~~~~~~~~~~ye~~~~~~ 368 (379)
... ...|.++++|+++|+++||++|||||+.|+++|..++++.|.+||.+|+++
T Consensus 241 ~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 241 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 532 346899999999999999999999999999999754444499999998763
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-56 Score=415.27 Aligned_cols=281 Identities=24% Similarity=0.407 Sum_probs=247.8
Q ss_pred HHHHhhHHHHHHHhhcCcHHHHHHHHHcCchhhhc--CCCCCCCCchHHHHHHHhhccccccccccchhhHHhHhHHHHH
Q 017022 81 DFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKN--GRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQAL 158 (379)
Q Consensus 81 ~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~ 158 (379)
++++|++|++++.++++|+|+||+|+|++...... ......|+++++++++|+++||+++||||+.+++++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999998642110 0112358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCchhhhHHHhHHHhHHhHHHHhhHchHHHHHHHHhcccchhhcCCCCCCCcHHHHHHHHHh
Q 017022 159 NFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLK 238 (379)
Q Consensus 159 ~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (379)
+|.+||.+|+.+.+..+. ......+++|++||+++.++++|+|+||+|+|++... .....|+++++++++|++
T Consensus 84 ~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~~ 156 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIAR 156 (303)
T ss_dssp TTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHHH
Confidence 999999999988654221 2345789999999999999999999999999998542 224578999999999999
Q ss_pred hcCccccccchhhhhhHHHhhhhHHHHHHHhhhhhhhcCC-CCchhHHHHHHHHHHHHHHHhhhcHHHHHHHhhcccCCC
Q 017022 239 SDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDG-MQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGE 317 (379)
Q Consensus 239 ~~G~~gly~G~~~~l~r~~~~~~i~~~~ye~~k~~~~~~~-~~~~~~~~~~~~~~ag~~~~~~t~Pldviktr~q~~~~~ 317 (379)
+||++|||||+.++++|.+|.++++|.+||.+|+.+.+.. .+++....+++|.++|++++++++|+||||+|||.+..
T Consensus 157 ~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~- 235 (303)
T 2lck_A 157 EEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL- 235 (303)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-
T ss_pred hcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-
Confidence 9999999999999999999999999999999999987643 34567788999999999999999999999999998753
Q ss_pred CcccCCHHHHHHHHHHhhchhhhccchHHHHHHHhhhHHH-HHHHHHHHHHHcC
Q 017022 318 AVKYKSSLHAFQEIIKNEGTKSLFKGAGANILRAVAGAGV-LAGYDKLQLVLFG 370 (379)
Q Consensus 318 ~~~~~~~~~~~~~i~~~eG~~gly~G~~~~l~~~~~~~~~-~~~ye~~~~~~~~ 370 (379)
..|.++++|+++|+++||++|||||+.|+++|.+|+.++ |.+||.+|+++.+
T Consensus 236 -~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 -GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp -SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred -cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999888 9999999987643
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.4e-42 Score=315.40 Aligned_cols=220 Identities=21% Similarity=0.316 Sum_probs=194.6
Q ss_pred CccccCCCccchhhhhcCCcccccCCCCcccccCCCccchhhhHHHHHHhhHHHHHHHhhcCcHHHHHHHHHcCchhhhc
Q 017022 36 GSFVNRGSQNSFWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKN 115 (379)
Q Consensus 36 G~~~~~~~~~p~~a~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~~~~~ 115 (379)
|+.+++++.+|+.++ +|.+||.+++.+..... ..+....+++|++|++++.++++|+|+||+|+|++...
T Consensus 69 G~~~~l~~~~~~~~i----~f~~ye~~k~~~~~~~~---~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--- 138 (303)
T 2lck_A 69 GLVAGLQRQMSFASV----RIGLYDSVKQFYTKGSE---HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--- 138 (303)
T ss_dssp SHHHHHHHHHHHHHH----TTTHHHHHHHHHSCCCS---SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCc---CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---
Confidence 999999999999999 99999999998765322 24567899999999999999999999999999998542
Q ss_pred CCCCCCCCchHHHHHHHhhccccccccccchhhHHhHhHHHHHHHHHHHHHHHHhccCCCCCCchhhhHHHhHHHhHHhH
Q 017022 116 GRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGA 195 (379)
Q Consensus 116 ~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~ 195 (379)
.....|+++++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+....+ ......+++|++||+
T Consensus 139 -~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~---~~~~~~~~~g~~ag~ 214 (303)
T 2lck_A 139 -GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT---DDLPCHFTSAFGAGF 214 (303)
T ss_dssp -CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC---SCHHHHHHHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHH
Confidence 1123589999999999999999999999999999999999999999999999886543222 123467999999999
Q ss_pred HHHhhHchHHHHHHHHhcccchhhcCCCCCCCcHHHHHHHHHhhcCccccccchhhhhhHHHhhhhHHHHHHHhhhhhhh
Q 017022 196 SSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL 275 (379)
Q Consensus 196 ~~~~~~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~r~~~~~~i~~~~ye~~k~~~~ 275 (379)
+++++++|+|+||+|+|++.. ..|.++++|+++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.
T Consensus 215 ~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 215 CTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999753 4689999999999999999999999999999999999999999999998875
Q ss_pred c
Q 017022 276 T 276 (379)
Q Consensus 276 ~ 276 (379)
+
T Consensus 288 ~ 288 (303)
T 2lck_A 288 A 288 (303)
T ss_dssp C
T ss_pred H
Confidence 3
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.1e-41 Score=309.71 Aligned_cols=224 Identities=18% Similarity=0.277 Sum_probs=187.0
Q ss_pred CccccCCCccchhhhhcCCcccccCCCCccccc-CCC-ccchhhhHHHHHHhhHHHHHHHhhcCcHHHHHHHHHcCchhh
Q 017022 36 GSFVNRGSQNSFWAASQGTGLALVSPVSPIFVQ-APS-EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMI 113 (379)
Q Consensus 36 G~~~~~~~~~p~~a~~~~~~f~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~iktr~q~~~~~~ 113 (379)
|+.+++++.+|..++ +|.+||.+++.+.. ... +....+....+++|++|++++.++++|+|+||+|+|++....
T Consensus 72 G~~~~l~~~~~~~~~----~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~ 147 (297)
T 1okc_A 72 GNLANVIRYFPTQAL----NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG 147 (297)
T ss_dssp TTHHHHHHHHHHHHH----HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC
Confidence 999999999999999 99999999985433 222 222235678899999999999999999999999999975321
Q ss_pred hcCCCCCCCCchHHHHHHHhhccccccccccchhhHHhHhHHHHHHHHHHHHHHHHhccCCCCCCchhhhHHHhHHHhHH
Q 017022 114 KNGRLSHPYKGISDCFARTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAA 193 (379)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~~~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a 193 (379)
.....|+++++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+..+ ......+++|++|
T Consensus 148 ---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~-----~~~~~~~~~g~~a 219 (297)
T 1okc_A 148 ---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-----VHIIVSWMIAQTV 219 (297)
T ss_dssp ---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-----SCHHHHHHHHHHH
T ss_pred ---CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----ccHHHHHHHHHHH
Confidence 12345899999999999999999999999999999999999999999999997754321 1234678999999
Q ss_pred hHHHHhhHchHHHHHHHHhcccchhhcCCCCCCCcHHHHHHHHHhhcCccccccchhhhhhHHHhhhhHHHHHHHhhhhh
Q 017022 194 GASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPV 273 (379)
Q Consensus 194 g~~~~~~~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~r~~~~~~i~~~~ye~~k~~ 273 (379)
|++++++++|+|+||+|||++.... .....|+++++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|+.
T Consensus 220 g~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 220 TAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHHhcChHHHHHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999999999875321 123578999999999999999999999999999996 5789999999999875
Q ss_pred h
Q 017022 274 V 274 (379)
Q Consensus 274 ~ 274 (379)
+
T Consensus 297 l 297 (297)
T 1okc_A 297 V 297 (297)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=22.24 E-value=46 Score=22.57 Aligned_cols=35 Identities=17% Similarity=0.483 Sum_probs=24.4
Q ss_pred CcccCCHHHHHHHHHHhhch----hhhccchHHHHHHHh
Q 017022 318 AVKYKSSLHAFQEIIKNEGT----KSLFKGAGANILRAV 352 (379)
Q Consensus 318 ~~~~~~~~~~~~~i~~~eG~----~gly~G~~~~l~~~~ 352 (379)
.+++.++-.-+..++.+-|+ +++|.|+...+.|..
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 34666667777777777775 678999988887765
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.72 E-value=88 Score=21.62 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=27.3
Q ss_pred CccccccchhhhhhHHHhhhhHHHHHHHhhhhhhhc
Q 017022 241 GIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLT 276 (379)
Q Consensus 241 G~~gly~G~~~~l~r~~~~~~i~~~~ye~~k~~~~~ 276 (379)
|+...+|-+...++..+|..++.+.+|++.++..+.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 444445556677888999999999999999877654
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=18.34 E-value=35 Score=21.93 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.1
Q ss_pred CchHHHHHHHhhcccccccc
Q 017022 123 KGISDCFARTVKDEGILSLW 142 (379)
Q Consensus 123 ~~~~~~~~~i~~~~G~~gly 142 (379)
+++.+.+..||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788889999999998886
No 8
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=10.11 E-value=1.5e+02 Score=18.88 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=28.2
Q ss_pred hhhcHHHHHHHhhcccCCCC-cccCCHHHHHHHHHHhhchhhhccch
Q 017022 299 LASYPIDTVRRRMMMTSGEA-VKYKSSLHAFQEIIKNEGTKSLFKGA 344 (379)
Q Consensus 299 ~~t~Pldviktr~q~~~~~~-~~~~~~~~~~~~i~~~eG~~gly~G~ 344 (379)
-+-.|+|+|---. .+.... ..-.+....-|..|+-|.-+-+|||.
T Consensus 20 nIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 20 NIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 3567999887533 222221 12223445568888888889999985
No 9
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=9.63 E-value=1.5e+02 Score=14.84 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=8.0
Q ss_pred chhhhccchHHHH
Q 017022 336 GTKSLFKGAGANI 348 (379)
Q Consensus 336 G~~gly~G~~~~l 348 (379)
|+..|-+|+.+++
T Consensus 9 glgslvkgiaahv 21 (26)
T 2l5r_A 9 GLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6666667665543
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=8.50 E-value=1.6e+02 Score=25.45 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHhhhcHHHHHHHhhcccCCCCcccCCHHHHHHHHHHhhch
Q 017022 296 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGT 337 (379)
Q Consensus 296 ~~~~~t~Pldviktr~q~~~~~~~~~~~~~~~~~~i~~~eG~ 337 (379)
.+++=.||||.+|-.++.- -++...+++.+.+||+
T Consensus 274 LaTFdnypfdllRfqL~Sl-------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL-------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC-------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh-------ccChHHHHHHHHhcCc
Confidence 4556679999998877642 2344678888999983
Done!