Query 017023
Match_columns 379
No_of_seqs 157 out of 999
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2749 mRNA cleavage and poly 100.0 3.5E-49 7.5E-54 375.5 25.5 288 35-355 101-412 (415)
2 COG1341 Predicted GTPase or GT 100.0 2.2E-43 4.8E-48 344.1 29.2 307 14-358 45-385 (398)
3 KOG2750 Uncharacterized conser 100.0 1.6E-39 3.4E-44 324.0 17.5 352 11-376 180-561 (587)
4 COG5623 CLP1 Predicted GTPase 100.0 1.6E-31 3.4E-36 249.9 20.0 303 22-355 85-421 (424)
5 PF06807 Clp1: Pre-mRNA cleava 100.0 4.3E-32 9.3E-37 246.8 5.5 190 161-359 1-195 (195)
6 PF03205 MobB: Molybdopterin g 99.6 9.9E-16 2.1E-20 132.5 3.4 114 38-159 1-140 (140)
7 KOG1532 GTPase XAB1, interacts 99.0 1.2E-09 2.6E-14 102.5 7.6 135 35-189 17-157 (366)
8 PF03029 ATP_bind_1: Conserved 99.0 1.8E-10 3.9E-15 108.3 1.8 118 42-179 1-119 (238)
9 KOG1534 Putative transcription 98.8 7E-09 1.5E-13 94.0 7.5 131 38-188 4-140 (273)
10 KOG1533 Predicted GTPase [Gene 98.8 1.2E-08 2.5E-13 93.9 7.8 107 40-166 5-111 (290)
11 PRK13768 GTPase; Provisional 98.4 9.6E-07 2.1E-11 83.8 9.9 42 38-79 3-44 (253)
12 TIGR03018 pepcterm_TyrKin exop 98.4 8.8E-06 1.9E-10 74.7 15.3 68 13-80 7-80 (207)
13 TIGR01425 SRP54_euk signal rec 98.3 2.8E-06 6E-11 86.1 10.7 42 37-78 100-141 (429)
14 cd03115 SRP The signal recogni 98.3 4.4E-06 9.5E-11 74.2 10.8 41 39-79 2-42 (173)
15 TIGR00064 ftsY signal recognit 98.3 5.1E-06 1.1E-10 79.7 10.3 40 36-75 71-110 (272)
16 PRK12726 flagellar biosynthesi 98.2 8.9E-06 1.9E-10 81.0 11.6 43 36-78 205-247 (407)
17 PRK00771 signal recognition pa 98.2 3.8E-06 8.1E-11 85.6 9.0 43 36-78 94-136 (437)
18 PRK10867 signal recognition pa 98.2 5.8E-06 1.3E-10 84.1 9.9 43 37-79 100-143 (433)
19 cd02034 CooC The accessory pro 98.2 6E-06 1.3E-10 69.1 8.3 36 40-75 2-37 (116)
20 PRK10416 signal recognition pa 98.2 1.2E-05 2.6E-10 78.8 10.5 43 36-78 113-155 (318)
21 TIGR03029 EpsG chain length de 98.2 4E-05 8.6E-10 73.2 13.7 44 36-79 102-146 (274)
22 TIGR00959 ffh signal recogniti 98.1 1.2E-05 2.5E-10 81.9 10.3 120 37-188 99-221 (428)
23 TIGR01007 eps_fam capsular exo 98.1 2.6E-05 5.7E-10 71.1 11.6 43 37-79 17-60 (204)
24 COG0541 Ffh Signal recognition 98.1 1.7E-05 3.7E-10 79.4 9.6 121 36-189 99-222 (451)
25 PF00448 SRP54: SRP54-type pro 98.0 1.2E-05 2.6E-10 73.5 7.3 42 37-78 1-42 (196)
26 COG3640 CooC CO dehydrogenase 98.0 6E-05 1.3E-09 69.9 11.6 49 39-90 2-51 (255)
27 PRK14974 cell division protein 98.0 2.2E-05 4.7E-10 77.5 9.3 40 37-76 140-179 (336)
28 cd02036 MinD Bacterial cell di 97.9 2.2E-05 4.7E-10 69.5 5.6 40 40-79 2-42 (179)
29 TIGR01969 minD_arch cell divis 97.9 2.5E-05 5.4E-10 73.1 6.2 42 39-80 2-44 (251)
30 PRK12724 flagellar biosynthesi 97.9 3E-05 6.5E-10 78.2 7.0 42 37-78 223-265 (432)
31 PRK06731 flhF flagellar biosyn 97.9 9.3E-05 2E-09 70.9 10.0 42 36-77 74-115 (270)
32 cd03114 ArgK-like The function 97.8 2.8E-05 6E-10 67.8 5.5 41 39-79 1-41 (148)
33 TIGR00176 mobB molybdopterin-g 97.8 3.4E-05 7.3E-10 67.9 6.0 45 40-84 2-46 (155)
34 PF07015 VirC1: VirC1 protein; 97.8 4.1E-05 8.9E-10 71.2 6.0 42 38-79 2-44 (231)
35 TIGR01968 minD_bact septum sit 97.8 4E-05 8.7E-10 72.0 6.1 43 38-80 2-45 (261)
36 PF01583 APS_kinase: Adenylyls 97.8 3.3E-05 7.1E-10 67.9 4.7 38 37-74 2-39 (156)
37 cd02042 ParA ParA and ParB of 97.7 4.8E-05 1E-09 61.6 5.3 37 40-76 2-39 (104)
38 PRK00889 adenylylsulfate kinas 97.7 5.2E-05 1.1E-09 67.5 5.8 40 36-75 3-42 (175)
39 TIGR00750 lao LAO/AO transport 97.7 8.9E-05 1.9E-09 72.1 7.8 57 21-79 20-76 (300)
40 PF01656 CbiA: CobQ/CobB/MinD/ 97.7 4.1E-05 8.9E-10 68.5 4.9 40 40-79 1-41 (195)
41 PRK09435 membrane ATPase/prote 97.7 9.3E-05 2E-09 72.9 7.7 44 36-79 55-98 (332)
42 PRK13849 putative crown gall t 97.7 5.9E-05 1.3E-09 70.7 6.0 41 38-78 2-43 (231)
43 PRK14493 putative bifunctional 97.7 6.3E-05 1.4E-09 72.3 6.2 48 38-87 2-49 (274)
44 CHL00175 minD septum-site dete 97.7 6.4E-05 1.4E-09 72.1 6.1 44 37-80 15-59 (281)
45 KOG0780 Signal recognition par 97.7 0.00017 3.7E-09 71.2 8.9 123 35-189 99-223 (483)
46 cd02019 NK Nucleoside/nucleoti 97.7 6.7E-05 1.5E-09 56.6 4.7 32 40-73 2-33 (69)
47 PRK10818 cell division inhibit 97.7 7.6E-05 1.7E-09 71.0 6.2 43 38-80 3-46 (270)
48 cd02037 MRP-like MRP (Multiple 97.7 7.8E-05 1.7E-09 66.0 5.6 40 40-79 2-42 (169)
49 PRK07667 uridine kinase; Provi 97.6 0.00013 2.9E-09 66.2 7.1 51 23-75 5-55 (193)
50 PHA02518 ParA-like protein; Pr 97.6 9.8E-05 2.1E-09 67.2 6.2 39 39-77 2-41 (211)
51 PRK09841 cryptic autophosphory 97.6 0.00035 7.6E-09 76.0 11.2 44 36-79 530-574 (726)
52 smart00382 AAA ATPases associa 97.6 5.5E-05 1.2E-09 62.4 3.8 39 37-75 2-40 (148)
53 cd02040 NifH NifH gene encodes 97.6 0.0001 2.2E-09 69.9 6.0 42 38-79 2-43 (270)
54 cd03116 MobB Molybdenum is an 97.6 0.00014 3E-09 64.3 6.3 47 38-84 2-48 (159)
55 PRK13869 plasmid-partitioning 97.6 0.00014 3.1E-09 73.6 7.2 41 38-79 122-163 (405)
56 PRK05541 adenylylsulfate kinas 97.6 0.00011 2.4E-09 65.3 5.6 39 36-74 6-44 (176)
57 PF13207 AAA_17: AAA domain; P 97.6 8.6E-05 1.9E-09 61.5 4.5 23 39-61 1-23 (121)
58 TIGR03371 cellulose_yhjQ cellu 97.6 0.00012 2.5E-09 68.5 5.9 39 38-76 2-41 (246)
59 TIGR03499 FlhF flagellar biosy 97.6 0.00011 2.4E-09 70.8 5.8 42 36-77 193-236 (282)
60 PF03308 ArgK: ArgK protein; 97.6 0.00013 2.7E-09 69.0 5.8 58 20-79 14-71 (266)
61 TIGR03453 partition_RepA plasm 97.5 0.00011 2.5E-09 73.8 5.9 43 37-80 104-147 (387)
62 PRK11889 flhF flagellar biosyn 97.5 0.00014 3.1E-09 72.9 6.1 59 19-77 218-281 (436)
63 cd00009 AAA The AAA+ (ATPases 97.5 0.00019 4.1E-09 59.9 6.1 39 37-75 19-57 (151)
64 TIGR01005 eps_transp_fam exopo 97.5 0.00027 5.9E-09 77.1 8.9 44 36-79 545-589 (754)
65 TIGR03815 CpaE_hom_Actino heli 97.5 0.00028 6E-09 69.2 8.0 44 36-79 92-136 (322)
66 COG0529 CysC Adenylylsulfate k 97.5 0.00015 3.4E-09 64.5 5.4 39 36-74 22-60 (197)
67 PRK13230 nitrogenase reductase 97.5 0.00015 3.3E-09 69.5 5.8 41 38-78 2-42 (279)
68 PRK13185 chlL protochlorophyll 97.5 0.00017 3.6E-09 68.7 5.9 41 38-79 3-43 (270)
69 PRK06696 uridine kinase; Valid 97.5 0.00025 5.3E-09 65.9 6.9 39 36-74 21-59 (223)
70 PRK13705 plasmid-partitioning 97.5 0.00023 5E-09 71.8 7.0 43 37-80 106-150 (388)
71 PRK08118 topology modulation p 97.5 9.3E-05 2E-09 65.8 3.7 24 38-61 2-25 (167)
72 cd02117 NifH_like This family 97.5 0.0002 4.4E-09 65.8 5.9 39 39-77 2-40 (212)
73 PRK06762 hypothetical protein; 97.4 0.00014 3E-09 64.0 4.4 35 37-74 2-36 (166)
74 PF09140 MipZ: ATPase MipZ; I 97.4 0.00013 2.9E-09 68.4 4.1 41 40-80 3-44 (261)
75 PRK10751 molybdopterin-guanine 97.4 0.00039 8.4E-09 62.3 6.7 39 37-75 6-44 (173)
76 PRK13886 conjugal transfer pro 97.4 0.00026 5.7E-09 66.6 5.8 43 38-80 3-46 (241)
77 cd02027 APSK Adenosine 5'-phos 97.4 0.0002 4.3E-09 62.4 4.7 37 39-75 1-37 (149)
78 PRK03846 adenylylsulfate kinas 97.4 0.00024 5.3E-09 64.6 5.5 40 36-75 23-62 (198)
79 cd01120 RecA-like_NTPases RecA 97.4 0.00024 5.2E-09 61.0 5.2 39 40-78 2-40 (165)
80 PRK11519 tyrosine kinase; Prov 97.4 0.0012 2.5E-08 71.8 11.6 45 36-80 525-570 (719)
81 PF13191 AAA_16: AAA ATPase do 97.4 0.00034 7.3E-09 61.9 6.2 59 19-78 7-65 (185)
82 cd03111 CpaE_like This protein 97.4 0.00034 7.4E-09 57.3 5.8 40 40-79 2-43 (106)
83 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00038 8.2E-09 64.1 6.6 52 20-74 24-75 (226)
84 PF13173 AAA_14: AAA domain 97.4 0.00024 5.3E-09 60.0 4.8 37 37-74 2-38 (128)
85 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.00028 6E-09 55.1 4.8 33 40-72 2-34 (99)
86 COG1192 Soj ATPases involved i 97.4 0.00028 6.1E-09 66.7 5.7 42 38-79 3-46 (259)
87 PRK05480 uridine/cytidine kina 97.4 0.00028 6E-09 64.6 5.5 38 36-75 5-42 (209)
88 cd02028 UMPK_like Uridine mono 97.4 0.00024 5.2E-09 63.9 4.8 35 40-74 2-36 (179)
89 TIGR01287 nifH nitrogenase iro 97.4 0.00032 7E-09 67.0 6.0 41 39-79 2-42 (275)
90 PRK14489 putative bifunctional 97.4 0.00072 1.6E-08 67.6 8.7 66 11-77 180-245 (366)
91 cd03110 Fer4_NifH_child This p 97.3 0.00024 5.3E-09 63.2 4.7 36 40-79 2-38 (179)
92 cd02023 UMPK Uridine monophosp 97.3 0.00024 5.2E-09 64.5 4.7 34 40-75 2-35 (198)
93 PRK05439 pantothenate kinase; 97.3 0.00056 1.2E-08 66.8 7.5 54 21-74 70-125 (311)
94 cd02032 Bchl_like This family 97.3 0.00036 7.8E-09 66.4 6.1 39 39-77 2-40 (267)
95 COG1763 MobB Molybdopterin-gua 97.3 0.00046 9.9E-09 61.1 6.0 49 37-85 2-50 (161)
96 TIGR02237 recomb_radB DNA repa 97.3 0.0004 8.6E-09 63.4 5.8 39 36-74 11-49 (209)
97 COG0489 Mrp ATPases involved i 97.3 0.0061 1.3E-07 58.3 14.1 42 38-79 58-100 (265)
98 TIGR00554 panK_bact pantothena 97.3 0.00061 1.3E-08 66.0 7.1 40 36-75 61-102 (290)
99 PRK10037 cell division protein 97.3 0.00038 8.1E-09 65.7 5.5 38 39-76 3-41 (250)
100 PRK14723 flhF flagellar biosyn 97.3 0.001 2.2E-08 71.9 8.9 40 37-76 185-226 (767)
101 PRK05703 flhF flagellar biosyn 97.2 0.00043 9.3E-09 70.6 5.8 41 37-77 221-263 (424)
102 PRK13232 nifH nitrogenase redu 97.2 0.0005 1.1E-08 65.7 5.9 41 39-79 3-43 (273)
103 CHL00072 chlL photochlorophyll 97.2 0.00051 1.1E-08 66.5 6.0 41 39-79 2-42 (290)
104 PF00485 PRK: Phosphoribulokin 97.2 0.0004 8.6E-09 63.0 4.7 29 39-67 1-29 (194)
105 TIGR01281 DPOR_bchL light-inde 97.2 0.00054 1.2E-08 65.1 5.8 39 39-77 2-40 (268)
106 cd01394 radB RadB. The archaea 97.2 0.00057 1.2E-08 62.9 5.8 52 24-76 7-58 (218)
107 cd02025 PanK Pantothenate kina 97.2 0.00045 9.7E-09 64.2 5.0 35 40-74 2-38 (220)
108 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00041 8.9E-09 65.4 4.8 36 40-75 2-37 (249)
109 cd02035 ArsA ArsA ATPase funct 97.2 0.0006 1.3E-08 63.1 5.7 40 40-79 2-41 (217)
110 PRK06217 hypothetical protein; 97.2 0.00035 7.5E-09 62.8 4.0 32 38-74 2-33 (183)
111 PRK07261 topology modulation p 97.2 0.00036 7.9E-09 62.2 4.0 24 38-61 1-24 (171)
112 PRK15453 phosphoribulokinase; 97.2 0.00063 1.4E-08 65.4 5.8 40 36-75 4-43 (290)
113 PF00004 AAA: ATPase family as 97.2 0.0005 1.1E-08 57.2 4.7 22 40-61 1-22 (132)
114 PF13671 AAA_33: AAA domain; P 97.2 0.0003 6.6E-09 59.8 3.4 32 39-75 1-32 (143)
115 PRK13235 nifH nitrogenase redu 97.2 0.00066 1.4E-08 64.9 6.0 41 39-79 3-43 (274)
116 PF06564 YhjQ: YhjQ protein; 97.2 0.00064 1.4E-08 64.1 5.7 41 38-78 2-43 (243)
117 COG4240 Predicted kinase [Gene 97.2 0.00083 1.8E-08 62.2 6.2 55 20-74 32-88 (300)
118 PRK09361 radB DNA repair and r 97.2 0.00073 1.6E-08 62.5 6.0 50 24-74 11-60 (225)
119 PRK08903 DnaA regulatory inact 97.2 0.0011 2.5E-08 61.3 7.3 59 18-76 22-81 (227)
120 PHA02519 plasmid partition pro 97.2 0.0011 2.5E-08 66.7 7.8 66 14-80 81-150 (387)
121 cd02033 BchX Chlorophyllide re 97.2 0.00074 1.6E-08 66.5 6.2 45 35-79 29-73 (329)
122 PRK03839 putative kinase; Prov 97.2 0.00043 9.2E-09 61.8 4.2 31 39-74 2-32 (180)
123 TIGR00455 apsK adenylylsulfate 97.2 0.00072 1.6E-08 60.6 5.6 40 36-75 17-56 (184)
124 COG1703 ArgK Putative periplas 97.1 0.0013 2.9E-08 63.2 7.1 55 23-79 39-93 (323)
125 PRK13949 shikimate kinase; Pro 97.1 0.00045 9.8E-09 61.5 3.6 31 39-74 3-33 (169)
126 PRK12727 flagellar biosynthesi 97.1 0.0014 3E-08 68.1 7.6 60 18-77 325-392 (559)
127 TIGR02016 BchX chlorophyllide 97.1 0.00093 2E-08 64.9 6.0 41 39-79 2-42 (296)
128 cd02029 PRK_like Phosphoribulo 97.1 0.00074 1.6E-08 64.4 5.1 36 40-75 2-37 (277)
129 PRK08084 DNA replication initi 97.1 0.00097 2.1E-08 62.5 5.8 39 37-75 45-83 (235)
130 PF08477 Miro: Miro-like prote 97.1 0.00052 1.1E-08 56.4 3.5 25 39-63 1-25 (119)
131 cd01124 KaiC KaiC is a circadi 97.0 0.0009 1.9E-08 59.6 5.2 38 40-77 2-39 (187)
132 PRK08233 hypothetical protein; 97.0 0.0007 1.5E-08 60.0 4.4 36 37-74 3-38 (182)
133 PRK12723 flagellar biosynthesi 97.0 0.00098 2.1E-08 67.1 5.6 41 37-77 174-218 (388)
134 PRK13233 nifH nitrogenase redu 97.0 0.001 2.3E-08 63.5 5.7 42 38-79 3-45 (275)
135 PRK00131 aroK shikimate kinase 97.0 0.00078 1.7E-08 59.1 4.3 33 37-74 4-36 (175)
136 PRK05537 bifunctional sulfate 97.0 0.0013 2.8E-08 69.4 6.6 60 15-76 372-432 (568)
137 TIGR03575 selen_PSTK_euk L-ser 97.0 0.00084 1.8E-08 66.3 4.9 37 40-76 2-39 (340)
138 COG0563 Adk Adenylate kinase a 97.0 0.00064 1.4E-08 61.2 3.6 23 39-61 2-24 (178)
139 PRK08533 flagellar accessory p 97.0 0.0014 3E-08 61.3 6.1 42 36-77 23-64 (230)
140 PF00437 T2SE: Type II/IV secr 97.0 0.0017 3.8E-08 61.8 6.8 58 16-79 111-168 (270)
141 PRK13234 nifH nitrogenase redu 97.0 0.0014 3E-08 63.6 6.2 42 38-79 5-46 (295)
142 PRK14530 adenylate kinase; Pro 97.0 0.00093 2E-08 61.6 4.6 25 37-61 3-27 (215)
143 PF13614 AAA_31: AAA domain; P 97.0 0.0015 3.2E-08 56.6 5.5 41 39-79 2-43 (157)
144 TIGR02782 TrbB_P P-type conjug 96.9 0.0027 5.9E-08 61.8 7.9 50 37-87 132-183 (299)
145 PRK09183 transposase/IS protei 96.9 0.0019 4E-08 61.6 6.6 37 37-73 102-138 (259)
146 PRK06067 flagellar accessory p 96.9 0.0015 3.2E-08 60.9 5.9 39 36-74 24-62 (234)
147 PRK06547 hypothetical protein; 96.9 0.001 2.2E-08 59.6 4.5 26 36-61 14-39 (172)
148 PRK11670 antiporter inner memb 96.9 0.0015 3.3E-08 65.4 6.2 42 38-79 108-150 (369)
149 PRK00625 shikimate kinase; Pro 96.9 0.00082 1.8E-08 60.2 3.9 31 39-74 2-32 (173)
150 TIGR01313 therm_gnt_kin carboh 96.9 0.0007 1.5E-08 59.3 3.4 31 40-75 1-31 (163)
151 PRK06995 flhF flagellar biosyn 96.9 0.0014 3E-08 67.7 5.8 40 36-75 255-296 (484)
152 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0015 3.2E-08 62.2 5.6 39 36-74 35-73 (259)
153 COG4088 Predicted nucleotide k 96.9 0.0036 7.8E-08 57.3 7.7 109 38-188 2-110 (261)
154 PRK09270 nucleoside triphospha 96.9 0.0015 3.2E-08 60.9 5.4 39 36-74 32-71 (229)
155 cd02021 GntK Gluconate kinase 96.9 0.00095 2.1E-08 57.6 3.9 31 40-75 2-32 (150)
156 PRK06893 DNA replication initi 96.9 0.0027 5.8E-08 59.3 7.1 38 37-74 39-76 (229)
157 PRK13231 nitrogenase reductase 96.9 0.00075 1.6E-08 64.1 3.5 40 38-78 3-42 (264)
158 PRK05642 DNA replication initi 96.9 0.002 4.4E-08 60.4 6.3 37 38-74 46-82 (234)
159 cd02038 FleN-like FleN is a me 96.9 0.0023 5.1E-08 54.9 6.1 40 41-80 4-43 (139)
160 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0021 4.5E-08 61.4 6.3 66 15-87 62-127 (264)
161 cd01130 VirB11-like_ATPase Typ 96.9 0.004 8.7E-08 56.1 7.8 50 16-71 9-58 (186)
162 PRK05057 aroK shikimate kinase 96.9 0.0012 2.7E-08 58.8 4.3 34 37-75 4-37 (172)
163 cd00550 ArsA_ATPase Oxyanion-t 96.8 0.0018 3.9E-08 61.4 5.7 39 39-77 2-40 (254)
164 COG0455 flhG Antiactivator of 96.8 0.015 3.3E-07 55.5 11.7 43 38-80 3-47 (262)
165 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0017 3.8E-08 55.6 4.8 42 18-61 5-46 (133)
166 PRK14494 putative molybdopteri 96.8 0.0025 5.3E-08 59.7 6.1 35 38-72 2-36 (229)
167 PF01695 IstB_IS21: IstB-like 96.8 0.002 4.3E-08 57.9 5.3 37 37-73 47-83 (178)
168 PRK05973 replicative DNA helic 96.8 0.0031 6.7E-08 59.3 6.7 57 20-76 40-103 (237)
169 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.5E-08 54.8 3.4 22 40-61 1-22 (129)
170 cd01672 TMPK Thymidine monopho 96.8 0.0021 4.5E-08 57.5 5.3 35 39-73 2-36 (200)
171 cd01131 PilT Pilus retraction 96.8 0.0028 6E-08 57.8 6.1 46 38-86 2-48 (198)
172 PHA00729 NTP-binding motif con 96.8 0.0016 3.6E-08 60.6 4.6 26 37-62 17-42 (226)
173 COG1126 GlnQ ABC-type polar am 96.8 0.0011 2.5E-08 61.0 3.5 37 36-73 27-63 (240)
174 PF06745 KaiC: KaiC; InterPro 96.8 0.0024 5.2E-08 59.1 5.7 40 36-75 18-58 (226)
175 PRK13900 type IV secretion sys 96.8 0.0032 6.9E-08 62.2 6.8 64 18-88 146-210 (332)
176 PRK00091 miaA tRNA delta(2)-is 96.8 0.0042 9.2E-08 60.7 7.6 84 37-136 4-90 (307)
177 PRK13236 nitrogenase reductase 96.8 0.0025 5.5E-08 61.8 6.0 42 38-79 7-48 (296)
178 PRK14722 flhF flagellar biosyn 96.7 0.0024 5.1E-08 64.0 5.8 41 36-76 136-178 (374)
179 COG1618 Predicted nucleotide k 96.7 0.002 4.3E-08 56.8 4.5 32 37-68 5-36 (179)
180 PRK14490 putative bifunctional 96.7 0.0023 5E-08 64.0 5.7 50 37-87 5-54 (369)
181 cd00984 DnaB_C DnaB helicase C 96.7 0.0026 5.7E-08 59.2 5.7 41 36-76 12-53 (242)
182 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0027 5.9E-08 58.8 5.7 39 36-74 19-57 (229)
183 TIGR00235 udk uridine kinase. 96.7 0.0017 3.6E-08 59.5 4.2 37 36-74 5-41 (207)
184 PRK13947 shikimate kinase; Pro 96.7 0.0017 3.6E-08 57.2 4.1 32 39-75 3-34 (171)
185 TIGR00041 DTMP_kinase thymidyl 96.7 0.0025 5.3E-08 57.4 5.3 36 37-72 3-38 (195)
186 cd01428 ADK Adenylate kinase ( 96.7 0.0016 3.5E-08 58.4 4.0 31 39-74 1-31 (194)
187 PTZ00301 uridine kinase; Provi 96.7 0.0026 5.6E-08 58.8 5.3 27 38-64 4-30 (210)
188 PLN02840 tRNA dimethylallyltra 96.7 0.0067 1.5E-07 61.5 8.5 100 36-162 20-121 (421)
189 TIGR02788 VirB11 P-type DNA tr 96.7 0.0049 1.1E-07 60.2 7.4 47 20-72 132-178 (308)
190 PF13481 AAA_25: AAA domain; P 96.7 0.0031 6.8E-08 56.5 5.6 41 36-76 31-81 (193)
191 PRK00698 tmk thymidylate kinas 96.7 0.0029 6.4E-08 57.2 5.4 34 37-70 3-36 (205)
192 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0033 7.1E-08 58.2 5.8 40 36-75 15-54 (224)
193 PLN02748 tRNA dimethylallyltra 96.7 0.0076 1.6E-07 62.0 8.9 98 36-161 21-121 (468)
194 PRK13948 shikimate kinase; Pro 96.7 0.0021 4.5E-08 58.1 4.3 33 37-74 10-42 (182)
195 PF13479 AAA_24: AAA domain 96.7 0.002 4.3E-08 59.5 4.3 33 37-77 3-35 (213)
196 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0018 4E-08 57.6 3.9 30 39-73 1-30 (183)
197 PF05729 NACHT: NACHT domain 96.7 0.0029 6.3E-08 54.6 5.1 28 39-66 2-29 (166)
198 TIGR01420 pilT_fam pilus retra 96.7 0.0044 9.5E-08 61.5 7.0 49 37-88 122-171 (343)
199 TIGR02012 tigrfam_recA protein 96.6 0.0029 6.4E-08 62.1 5.6 39 36-74 54-92 (321)
200 PRK06526 transposase; Provisio 96.6 0.0015 3.2E-08 62.1 3.4 35 37-71 98-132 (254)
201 PF13245 AAA_19: Part of AAA d 96.6 0.0044 9.6E-08 47.8 5.3 35 37-71 10-48 (76)
202 PF02492 cobW: CobW/HypB/UreG, 96.6 0.0037 7.9E-08 56.0 5.6 41 38-79 1-41 (178)
203 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0022 4.7E-08 57.2 4.0 25 37-61 3-27 (188)
204 PRK08727 hypothetical protein; 96.6 0.0026 5.6E-08 59.5 4.7 37 38-74 42-78 (233)
205 PF13401 AAA_22: AAA domain; P 96.6 0.0025 5.4E-08 53.2 4.0 39 37-75 4-47 (131)
206 PF12846 AAA_10: AAA-like doma 96.6 0.0032 6.9E-08 59.9 5.2 37 38-74 2-38 (304)
207 PRK04296 thymidine kinase; Pro 96.6 0.004 8.6E-08 56.5 5.6 35 37-71 2-36 (190)
208 PRK14527 adenylate kinase; Pro 96.6 0.0023 5.1E-08 57.7 4.1 26 36-61 5-30 (191)
209 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.0059 1.3E-07 60.9 7.1 63 12-84 117-181 (358)
210 cd00464 SK Shikimate kinase (S 96.5 0.0022 4.8E-08 55.2 3.6 30 40-74 2-31 (154)
211 COG0467 RAD55 RecA-superfamily 96.5 0.0041 8.8E-08 59.0 5.7 44 36-79 22-65 (260)
212 PLN02796 D-glycerate 3-kinase 96.5 0.003 6.6E-08 62.4 4.9 39 36-74 99-137 (347)
213 PRK14532 adenylate kinase; Pro 96.5 0.0026 5.7E-08 57.1 4.1 30 39-73 2-31 (188)
214 PTZ00088 adenylate kinase 1; P 96.5 0.0029 6.3E-08 59.2 4.5 33 37-74 6-38 (229)
215 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.0042 9.2E-08 58.2 5.6 50 25-75 10-59 (237)
216 PF07728 AAA_5: AAA domain (dy 96.5 0.0042 9.1E-08 52.8 5.1 34 40-76 2-35 (139)
217 TIGR00073 hypB hydrogenase acc 96.5 0.0047 1E-07 56.6 5.8 40 36-76 21-60 (207)
218 PF08433 KTI12: Chromatin asso 96.5 0.0031 6.8E-08 60.5 4.7 104 38-187 2-105 (270)
219 PRK14730 coaE dephospho-CoA ki 96.5 0.003 6.4E-08 57.6 4.4 42 38-84 2-43 (195)
220 PRK14495 putative molybdopteri 96.5 0.0052 1.1E-07 62.4 6.4 38 38-75 2-39 (452)
221 PRK08181 transposase; Validate 96.5 0.0031 6.7E-08 60.5 4.6 37 37-73 106-142 (269)
222 PRK06851 hypothetical protein; 96.5 0.025 5.4E-07 56.5 11.1 61 13-77 194-256 (367)
223 COG0218 Predicted GTPase [Gene 96.5 0.03 6.5E-07 51.0 10.6 114 37-189 24-145 (200)
224 PRK06761 hypothetical protein; 96.5 0.0033 7.2E-08 60.6 4.6 41 37-77 3-44 (282)
225 PHA02530 pseT polynucleotide k 96.5 0.0027 5.8E-08 61.3 4.0 34 38-75 3-36 (300)
226 PRK03731 aroL shikimate kinase 96.5 0.0031 6.8E-08 55.6 4.2 32 38-74 3-34 (171)
227 PRK14531 adenylate kinase; Pro 96.5 0.0027 5.9E-08 57.0 3.8 24 38-61 3-26 (183)
228 cd01122 GP4d_helicase GP4d_hel 96.4 0.0049 1.1E-07 58.6 5.6 58 16-76 12-70 (271)
229 cd00227 CPT Chloramphenicol (C 96.4 0.0031 6.8E-08 56.1 4.0 25 37-61 2-26 (175)
230 PF01926 MMR_HSR1: 50S ribosom 96.4 0.0022 4.9E-08 52.7 2.8 21 39-59 1-21 (116)
231 PF01935 DUF87: Domain of unkn 96.4 0.0045 9.9E-08 57.3 5.1 44 38-84 24-68 (229)
232 cd02024 NRK1 Nicotinamide ribo 96.4 0.0029 6.2E-08 57.4 3.6 22 40-61 2-23 (187)
233 PF04665 Pox_A32: Poxvirus A32 96.4 0.0044 9.6E-08 58.3 4.9 33 37-69 13-45 (241)
234 PRK07952 DNA replication prote 96.4 0.0043 9.4E-08 58.6 4.9 36 38-73 100-135 (244)
235 PLN03025 replication factor C 96.4 0.0048 1E-07 60.4 5.3 29 37-65 34-62 (319)
236 PRK12377 putative replication 96.4 0.0047 1E-07 58.6 5.0 36 38-73 102-137 (248)
237 PLN03046 D-glycerate 3-kinase; 96.4 0.0047 1E-07 62.5 5.2 39 36-74 211-249 (460)
238 PRK00440 rfc replication facto 96.4 0.0051 1.1E-07 59.5 5.4 37 37-73 38-74 (319)
239 PRK13851 type IV secretion sys 96.4 0.0039 8.5E-08 61.8 4.6 49 17-71 147-195 (344)
240 PRK00411 cdc6 cell division co 96.4 0.01 2.2E-07 59.5 7.6 39 36-74 54-94 (394)
241 PRK09825 idnK D-gluconate kina 96.4 0.0045 9.7E-08 55.5 4.5 34 37-75 3-36 (176)
242 PRK13946 shikimate kinase; Pro 96.4 0.0034 7.3E-08 56.5 3.7 33 37-74 10-42 (184)
243 COG1855 ATPase (PilT family) [ 96.4 0.0051 1.1E-07 62.1 5.2 33 39-71 265-297 (604)
244 PLN02674 adenylate kinase 96.4 0.0057 1.2E-07 57.8 5.4 40 20-61 16-55 (244)
245 TIGR03263 guanyl_kin guanylate 96.3 0.003 6.4E-08 56.1 3.3 24 38-61 2-25 (180)
246 PRK00279 adk adenylate kinase; 96.3 0.0042 9.2E-08 57.2 4.4 30 39-73 2-31 (215)
247 KOG0635 Adenosine 5'-phosphosu 96.3 0.0071 1.5E-07 52.7 5.3 40 35-74 29-68 (207)
248 cd03112 CobW_like The function 96.3 0.0059 1.3E-07 53.6 5.1 42 38-81 1-42 (158)
249 PRK04328 hypothetical protein; 96.3 0.0064 1.4E-07 57.5 5.6 40 36-75 22-61 (249)
250 COG0703 AroK Shikimate kinase 96.3 0.0029 6.3E-08 56.4 3.0 32 38-74 3-34 (172)
251 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.0048 1E-07 57.2 4.7 51 24-75 7-63 (235)
252 TIGR02928 orc1/cdc6 family rep 96.3 0.011 2.3E-07 58.7 7.4 57 18-74 21-83 (365)
253 TIGR02322 phosphon_PhnN phosph 96.3 0.0036 7.8E-08 55.6 3.6 24 38-61 2-25 (179)
254 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0051 1.1E-07 50.7 4.1 22 37-58 15-36 (107)
255 PF10662 PduV-EutP: Ethanolami 96.3 0.0032 7E-08 54.5 3.1 22 38-59 2-23 (143)
256 cd02020 CMPK Cytidine monophos 96.3 0.0038 8.1E-08 53.1 3.5 31 39-74 1-31 (147)
257 TIGR00101 ureG urease accessor 96.3 0.0057 1.2E-07 56.0 4.8 39 38-77 2-40 (199)
258 PRK13764 ATPase; Provisional 96.3 0.0075 1.6E-07 63.9 6.3 39 37-76 257-295 (602)
259 PRK06835 DNA replication prote 96.3 0.0047 1E-07 60.9 4.5 36 38-73 184-219 (329)
260 cd01393 recA_like RecA is a b 96.3 0.0064 1.4E-07 56.0 5.2 50 24-74 7-62 (226)
261 PRK00081 coaE dephospho-CoA ki 96.3 0.0042 9.2E-08 56.4 3.9 33 38-76 3-35 (194)
262 cd00983 recA RecA is a bacter 96.3 0.0069 1.5E-07 59.6 5.6 39 36-74 54-92 (325)
263 PRK08116 hypothetical protein; 96.3 0.005 1.1E-07 59.0 4.6 36 38-73 115-150 (268)
264 TIGR01351 adk adenylate kinase 96.3 0.0031 6.7E-08 57.9 3.0 23 39-61 1-23 (210)
265 PF00308 Bac_DnaA: Bacterial d 96.3 0.0089 1.9E-07 55.5 6.0 51 23-74 21-73 (219)
266 COG1100 GTPase SAR1 and relate 96.2 0.003 6.6E-08 57.6 2.9 58 38-95 6-63 (219)
267 cd02022 DPCK Dephospho-coenzym 96.2 0.0041 8.9E-08 55.7 3.6 32 39-76 1-32 (179)
268 PRK09354 recA recombinase A; P 96.2 0.0072 1.6E-07 59.9 5.5 39 36-74 59-97 (349)
269 PRK13833 conjugal transfer pro 96.2 0.01 2.3E-07 58.3 6.6 36 37-72 144-181 (323)
270 PLN02348 phosphoribulokinase 96.2 0.0099 2.1E-07 59.7 6.4 28 36-63 48-75 (395)
271 PRK06921 hypothetical protein; 96.2 0.0073 1.6E-07 57.8 5.3 37 37-73 117-154 (266)
272 PF03266 NTPase_1: NTPase; In 96.2 0.0067 1.5E-07 54.0 4.6 29 39-67 1-29 (168)
273 TIGR02525 plasmid_TraJ plasmid 96.2 0.013 2.7E-07 58.9 7.0 51 14-72 134-186 (372)
274 PRK07933 thymidylate kinase; V 96.2 0.0074 1.6E-07 55.8 5.0 35 39-73 2-36 (213)
275 PRK06851 hypothetical protein; 96.1 0.025 5.4E-07 56.6 8.9 40 37-76 30-71 (367)
276 PF13604 AAA_30: AAA domain; P 96.1 0.018 3.8E-07 52.5 7.1 49 19-71 4-52 (196)
277 PRK00300 gmk guanylate kinase; 96.1 0.005 1.1E-07 55.9 3.5 26 36-61 4-29 (205)
278 PRK04182 cytidylate kinase; Pr 96.1 0.0044 9.5E-08 54.7 3.0 30 39-73 2-31 (180)
279 PRK02496 adk adenylate kinase; 96.1 0.0055 1.2E-07 54.8 3.6 24 38-61 2-25 (184)
280 PF00005 ABC_tran: ABC transpo 96.1 0.0047 1E-07 52.1 3.0 27 36-62 10-36 (137)
281 COG4619 ABC-type uncharacteriz 96.1 0.0055 1.2E-07 54.6 3.4 26 36-61 28-53 (223)
282 COG1419 FlhF Flagellar GTP-bin 96.1 0.013 2.8E-07 58.9 6.4 59 17-75 183-243 (407)
283 COG4559 ABC-type hemin transpo 96.1 0.0046 9.9E-08 57.0 2.9 42 36-77 26-67 (259)
284 COG2884 FtsE Predicted ATPase 96.1 0.0069 1.5E-07 54.9 4.0 53 22-76 15-67 (223)
285 PRK12402 replication factor C 96.0 0.0098 2.1E-07 58.1 5.4 28 38-65 37-64 (337)
286 PF02374 ArsA_ATPase: Anion-tr 96.0 0.011 2.3E-07 57.8 5.6 40 39-78 3-42 (305)
287 PF00931 NB-ARC: NB-ARC domain 96.0 0.01 2.2E-07 56.4 5.4 56 20-77 4-61 (287)
288 PF06414 Zeta_toxin: Zeta toxi 96.0 0.0059 1.3E-07 55.6 3.5 38 36-75 14-51 (199)
289 TIGR02640 gas_vesic_GvpN gas v 96.0 0.011 2.4E-07 56.3 5.4 36 37-75 21-56 (262)
290 cd03292 ABC_FtsE_transporter F 96.0 0.0043 9.3E-08 56.8 2.4 35 36-70 26-60 (214)
291 PLN02200 adenylate kinase fami 96.0 0.0066 1.4E-07 57.0 3.7 25 37-61 43-67 (234)
292 cd00881 GTP_translation_factor 96.0 0.0064 1.4E-07 53.5 3.5 28 39-66 1-28 (189)
293 PF13521 AAA_28: AAA domain; P 96.0 0.0069 1.5E-07 53.1 3.6 22 39-60 1-22 (163)
294 cd03222 ABC_RNaseL_inhibitor T 95.9 0.0056 1.2E-07 55.0 3.0 34 36-69 24-57 (177)
295 PRK14733 coaE dephospho-CoA ki 95.9 0.0078 1.7E-07 55.4 4.0 39 37-80 6-44 (204)
296 PRK11823 DNA repair protein Ra 95.9 0.012 2.6E-07 60.5 5.7 39 36-74 79-117 (446)
297 PLN02199 shikimate kinase 95.9 0.0074 1.6E-07 58.4 4.0 33 37-74 102-134 (303)
298 COG1120 FepC ABC-type cobalami 95.9 0.0053 1.2E-07 58.3 2.9 41 36-76 27-67 (258)
299 PRK05800 cobU adenosylcobinami 95.9 0.0085 1.8E-07 53.5 4.1 32 38-72 2-33 (170)
300 PRK10078 ribose 1,5-bisphospho 95.9 0.0057 1.2E-07 55.0 2.9 24 38-61 3-26 (186)
301 cd04155 Arl3 Arl3 subfamily. 95.9 0.0068 1.5E-07 52.9 3.3 24 37-60 14-37 (173)
302 PF10236 DAP3: Mitochondrial r 95.9 0.015 3.2E-07 56.9 6.0 47 25-71 11-57 (309)
303 TIGR00416 sms DNA repair prote 95.9 0.013 2.7E-07 60.4 5.6 39 36-74 93-131 (454)
304 COG0572 Udk Uridine kinase [Nu 95.9 0.0088 1.9E-07 55.3 4.0 35 38-74 9-43 (218)
305 PRK13477 bifunctional pantoate 95.9 0.0088 1.9E-07 62.3 4.5 34 36-74 283-316 (512)
306 COG1149 MinD superfamily P-loo 95.9 0.011 2.4E-07 56.2 4.7 41 39-80 3-44 (284)
307 cd00544 CobU Adenosylcobinamid 95.9 0.012 2.5E-07 52.6 4.7 30 40-72 2-31 (169)
308 PRK12608 transcription termina 95.9 0.014 3E-07 58.4 5.6 32 36-67 132-163 (380)
309 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0064 1.4E-07 55.8 3.1 35 36-70 29-63 (218)
310 cd03301 ABC_MalK_N The N-termi 95.9 0.0053 1.1E-07 56.2 2.5 35 36-70 25-59 (213)
311 PRK05506 bifunctional sulfate 95.9 0.01 2.3E-07 63.6 5.1 40 36-75 459-498 (632)
312 cd02030 NDUO42 NADH:Ubiquinone 95.8 0.078 1.7E-06 49.0 10.3 22 40-61 2-23 (219)
313 cd03259 ABC_Carb_Solutes_like 95.8 0.0058 1.3E-07 55.9 2.7 35 36-70 25-59 (213)
314 cd00154 Rab Rab family. Rab G 95.8 0.0077 1.7E-07 50.9 3.2 23 39-61 2-24 (159)
315 cd04113 Rab4 Rab4 subfamily. 95.8 0.0076 1.6E-07 52.0 3.3 22 39-60 2-23 (161)
316 TIGR00362 DnaA chromosomal rep 95.8 0.017 3.6E-07 58.5 6.2 37 38-74 137-175 (405)
317 PRK14528 adenylate kinase; Pro 95.8 0.0089 1.9E-07 53.9 3.7 24 38-61 2-25 (186)
318 PRK13695 putative NTPase; Prov 95.8 0.014 3E-07 51.8 4.9 30 39-68 2-31 (174)
319 cd03223 ABCD_peroxisomal_ALDP 95.8 0.0077 1.7E-07 53.2 3.2 27 36-62 26-52 (166)
320 cd03224 ABC_TM1139_LivF_branch 95.8 0.0057 1.2E-07 56.3 2.4 35 36-70 25-59 (222)
321 PLN02924 thymidylate kinase 95.8 0.017 3.7E-07 53.7 5.6 36 36-71 15-50 (220)
322 cd02026 PRK Phosphoribulokinas 95.8 0.007 1.5E-07 58.2 3.1 33 40-74 2-34 (273)
323 PRK12422 chromosomal replicati 95.8 0.01 2.2E-07 61.0 4.4 37 38-74 142-178 (445)
324 TIGR01618 phage_P_loop phage n 95.8 0.015 3.3E-07 54.1 5.2 36 37-79 12-47 (220)
325 cd01862 Rab7 Rab7 subfamily. 95.8 0.0075 1.6E-07 52.4 3.0 22 39-60 2-23 (172)
326 cd03243 ABC_MutS_homologs The 95.8 0.14 3E-06 46.5 11.5 25 37-61 29-54 (202)
327 PF00910 RNA_helicase: RNA hel 95.8 0.0091 2E-07 48.9 3.3 26 40-65 1-26 (107)
328 cd01121 Sms Sms (bacterial rad 95.8 0.016 3.5E-07 58.1 5.7 39 36-74 81-119 (372)
329 TIGR00960 3a0501s02 Type II (G 95.7 0.0071 1.5E-07 55.5 2.9 26 36-61 28-53 (216)
330 TIGR00152 dephospho-CoA kinase 95.7 0.0095 2.1E-07 53.6 3.7 33 39-76 1-33 (188)
331 cd03260 ABC_PstB_phosphate_tra 95.7 0.01 2.2E-07 54.9 3.9 26 36-61 25-50 (227)
332 PRK14491 putative bifunctional 95.7 0.02 4.4E-07 60.9 6.6 37 37-73 10-46 (597)
333 TIGR02881 spore_V_K stage V sp 95.7 0.013 2.9E-07 55.6 4.8 27 37-63 42-68 (261)
334 PRK13541 cytochrome c biogenes 95.7 0.0079 1.7E-07 54.4 3.1 40 36-75 25-64 (195)
335 cd03230 ABC_DR_subfamily_A Thi 95.7 0.0073 1.6E-07 53.6 2.7 26 36-61 25-50 (173)
336 cd00157 Rho Rho (Ras homology) 95.7 0.009 1.9E-07 51.8 3.3 23 39-61 2-24 (171)
337 TIGR02655 circ_KaiC circadian 95.7 0.015 3.3E-07 60.4 5.4 39 36-74 20-59 (484)
338 TIGR02673 FtsE cell division A 95.7 0.0076 1.6E-07 55.2 2.9 26 36-61 27-52 (214)
339 cd03234 ABCG_White The White s 95.7 0.0069 1.5E-07 56.1 2.7 39 36-74 32-73 (226)
340 PRK13973 thymidylate kinase; P 95.7 0.018 3.8E-07 53.1 5.3 35 37-71 3-37 (213)
341 cd04138 H_N_K_Ras_like H-Ras/N 95.7 0.0094 2E-07 51.0 3.3 22 38-59 2-23 (162)
342 cd03261 ABC_Org_Solvent_Resist 95.7 0.0073 1.6E-07 56.2 2.8 35 36-70 25-59 (235)
343 TIGR01166 cbiO cobalt transpor 95.7 0.0078 1.7E-07 54.1 2.9 26 36-61 17-42 (190)
344 cd03262 ABC_HisP_GlnQ_permease 95.7 0.0085 1.8E-07 54.7 3.1 26 36-61 25-50 (213)
345 TIGR02655 circ_KaiC circadian 95.7 0.017 3.7E-07 60.0 5.6 39 36-74 262-300 (484)
346 PRK08939 primosomal protein Dn 95.7 0.018 3.8E-07 56.3 5.4 37 37-73 156-192 (306)
347 PRK13894 conjugal transfer ATP 95.7 0.014 3E-07 57.4 4.7 26 37-62 148-173 (319)
348 cd03226 ABC_cobalt_CbiO_domain 95.6 0.0083 1.8E-07 54.6 2.9 26 36-61 25-50 (205)
349 cd03265 ABC_DrrA DrrA is the A 95.6 0.0083 1.8E-07 55.2 2.9 26 36-61 25-50 (220)
350 TIGR03608 L_ocin_972_ABC putat 95.6 0.0083 1.8E-07 54.5 2.9 26 36-61 23-48 (206)
351 cd03246 ABCC_Protease_Secretio 95.6 0.012 2.6E-07 52.2 3.8 26 36-61 27-52 (173)
352 KOG0781 Signal recognition par 95.6 0.02 4.4E-07 58.3 5.8 123 35-188 376-505 (587)
353 cd03244 ABCC_MRP_domain2 Domai 95.6 0.01 2.2E-07 54.6 3.5 27 36-62 29-55 (221)
354 cd03214 ABC_Iron-Siderophores_ 95.6 0.0078 1.7E-07 53.8 2.7 26 36-61 24-49 (180)
355 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.11 2.5E-06 47.9 10.5 22 38-59 30-51 (213)
356 COG1072 CoaA Panthothenate kin 95.6 0.02 4.3E-07 54.6 5.4 33 35-67 80-112 (283)
357 TIGR02315 ABC_phnC phosphonate 95.6 0.0092 2E-07 55.7 3.2 35 36-70 27-61 (243)
358 cd03225 ABC_cobalt_CbiO_domain 95.6 0.0092 2E-07 54.5 3.1 26 36-61 26-51 (211)
359 cd03215 ABC_Carb_Monos_II This 95.6 0.0077 1.7E-07 53.9 2.6 35 36-70 25-59 (182)
360 PRK04040 adenylate kinase; Pro 95.6 0.011 2.4E-07 53.5 3.6 25 37-61 2-26 (188)
361 cd03258 ABC_MetN_methionine_tr 95.6 0.0078 1.7E-07 55.9 2.7 35 36-70 30-64 (233)
362 cd01860 Rab5_related Rab5-rela 95.6 0.0098 2.1E-07 51.2 3.2 22 39-60 3-24 (163)
363 smart00175 RAB Rab subfamily o 95.6 0.0095 2.1E-07 51.2 3.1 22 39-60 2-23 (164)
364 PRK12339 2-phosphoglycerate ki 95.6 0.011 2.3E-07 54.1 3.5 25 37-61 3-27 (197)
365 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.6 0.02 4.4E-07 52.1 5.3 81 38-141 39-121 (205)
366 PRK14731 coaE dephospho-CoA ki 95.6 0.012 2.6E-07 54.1 3.9 32 37-74 5-36 (208)
367 PRK08356 hypothetical protein; 95.6 0.01 2.2E-07 53.8 3.3 22 37-58 5-26 (195)
368 TIGR03410 urea_trans_UrtE urea 95.6 0.0078 1.7E-07 55.8 2.6 35 36-70 25-59 (230)
369 PRK13540 cytochrome c biogenes 95.6 0.0091 2E-07 54.2 3.0 26 36-61 26-51 (200)
370 cd03263 ABC_subfamily_A The AB 95.6 0.0091 2E-07 54.9 3.0 34 36-69 27-60 (220)
371 cd03238 ABC_UvrA The excision 95.6 0.012 2.6E-07 52.8 3.7 23 36-58 20-42 (176)
372 PF00735 Septin: Septin; Inte 95.6 0.0084 1.8E-07 57.8 2.9 26 38-63 5-30 (281)
373 PRK10463 hydrogenase nickel in 95.6 0.019 4.1E-07 55.6 5.2 42 36-78 103-144 (290)
374 PRK10646 ADP-binding protein; 95.6 0.018 4E-07 50.5 4.7 42 18-61 11-52 (153)
375 cd03269 ABC_putative_ATPase Th 95.6 0.012 2.5E-07 53.8 3.6 26 36-61 25-50 (210)
376 cd03254 ABCC_Glucan_exporter_l 95.6 0.01 2.3E-07 54.8 3.3 26 36-61 28-53 (229)
377 cd03264 ABC_drug_resistance_li 95.6 0.0082 1.8E-07 54.9 2.6 33 37-70 26-58 (211)
378 TIGR02236 recomb_radA DNA repa 95.6 0.018 3.8E-07 56.2 5.0 39 36-74 94-138 (310)
379 cd00876 Ras Ras family. The R 95.6 0.0094 2E-07 50.8 2.8 22 39-60 1-22 (160)
380 cd03218 ABC_YhbG The ABC trans 95.5 0.0096 2.1E-07 55.2 3.0 35 36-70 25-59 (232)
381 TIGR02533 type_II_gspE general 95.5 0.021 4.6E-07 59.3 5.8 65 14-85 223-287 (486)
382 CHL00181 cbbX CbbX; Provisiona 95.5 0.017 3.7E-07 55.9 4.8 29 37-65 59-87 (287)
383 PRK14250 phosphate ABC transpo 95.5 0.0075 1.6E-07 56.5 2.3 35 36-70 28-62 (241)
384 TIGR01650 PD_CobS cobaltochela 95.5 0.033 7.1E-07 54.8 6.7 60 19-87 52-111 (327)
385 cd03228 ABCC_MRP_Like The MRP 95.5 0.012 2.5E-07 52.2 3.3 26 36-61 27-52 (171)
386 PRK11545 gntK gluconate kinase 95.5 0.011 2.3E-07 52.2 3.1 29 43-76 1-29 (163)
387 cd03219 ABC_Mj1267_LivG_branch 95.5 0.0087 1.9E-07 55.6 2.7 26 36-61 25-50 (236)
388 cd03257 ABC_NikE_OppD_transpor 95.5 0.008 1.7E-07 55.5 2.4 26 36-61 30-55 (228)
389 PRK11629 lolD lipoprotein tran 95.5 0.0082 1.8E-07 55.9 2.5 26 36-61 34-59 (233)
390 PRK04220 2-phosphoglycerate ki 95.5 0.016 3.5E-07 56.3 4.5 37 37-77 92-128 (301)
391 cd03251 ABCC_MsbA MsbA is an e 95.5 0.012 2.6E-07 54.6 3.6 35 36-70 27-61 (234)
392 PF01637 Arch_ATPase: Archaeal 95.5 0.0031 6.7E-08 57.5 -0.4 37 37-73 20-56 (234)
393 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.009 2E-07 55.0 2.7 35 36-70 29-63 (220)
394 cd03296 ABC_CysA_sulfate_impor 95.5 0.0083 1.8E-07 56.0 2.5 35 36-70 27-61 (239)
395 cd03235 ABC_Metallic_Cations A 95.5 0.0089 1.9E-07 54.7 2.6 35 36-70 24-58 (213)
396 cd03256 ABC_PhnC_transporter A 95.5 0.0097 2.1E-07 55.4 2.9 35 36-70 26-60 (241)
397 TIGR02211 LolD_lipo_ex lipopro 95.5 0.013 2.7E-07 54.0 3.6 26 36-61 30-55 (221)
398 PF00071 Ras: Ras family; Int 95.5 0.012 2.7E-07 50.6 3.3 22 39-60 1-22 (162)
399 PRK09302 circadian clock prote 95.5 0.043 9.4E-07 57.2 8.0 41 36-76 30-71 (509)
400 CHL00081 chlI Mg-protoporyphyr 95.5 0.021 4.6E-07 56.8 5.3 60 20-81 21-83 (350)
401 smart00173 RAS Ras subfamily o 95.5 0.012 2.7E-07 50.7 3.3 22 39-60 2-23 (164)
402 PRK07429 phosphoribulokinase; 95.5 0.017 3.7E-07 57.0 4.6 37 36-74 7-43 (327)
403 cd03247 ABCC_cytochrome_bd The 95.5 0.012 2.6E-07 52.4 3.3 26 36-61 27-52 (178)
404 PF07724 AAA_2: AAA domain (Cd 95.5 0.02 4.4E-07 51.1 4.8 37 38-74 4-41 (171)
405 PF03193 DUF258: Protein of un 95.5 0.021 4.5E-07 50.6 4.7 25 37-61 35-59 (161)
406 PRK10247 putative ABC transpor 95.5 0.013 2.8E-07 54.3 3.6 26 36-61 32-57 (225)
407 PRK14737 gmk guanylate kinase; 95.5 0.014 3E-07 52.8 3.6 25 36-60 3-27 (186)
408 cd03216 ABC_Carb_Monos_I This 95.5 0.009 2E-07 52.6 2.4 26 36-61 25-50 (163)
409 cd03298 ABC_ThiQ_thiamine_tran 95.5 0.01 2.2E-07 54.2 2.8 26 36-61 23-48 (211)
410 PRK14721 flhF flagellar biosyn 95.5 0.025 5.3E-07 57.6 5.8 40 36-75 190-231 (420)
411 TIGR03864 PQQ_ABC_ATP ABC tran 95.5 0.0093 2E-07 55.6 2.5 35 36-70 26-60 (236)
412 COG1124 DppF ABC-type dipeptid 95.5 0.012 2.5E-07 55.3 3.1 42 20-63 18-59 (252)
413 cd03245 ABCC_bacteriocin_expor 95.4 0.013 2.7E-07 53.9 3.4 26 36-61 29-54 (220)
414 COG1116 TauB ABC-type nitrate/ 95.4 0.014 3E-07 54.9 3.6 34 36-69 28-61 (248)
415 TIGR01184 ntrCD nitrate transp 95.4 0.011 2.3E-07 55.1 2.9 35 36-70 10-44 (230)
416 PLN02318 phosphoribulokinase/u 95.4 0.02 4.3E-07 60.3 5.1 25 37-61 65-89 (656)
417 cd01853 Toc34_like Toc34-like 95.4 0.18 4E-06 47.7 11.3 43 18-60 11-54 (249)
418 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.014 3E-07 53.2 3.6 35 36-70 33-67 (207)
419 COG1484 DnaC DNA replication p 95.4 0.024 5.3E-07 53.9 5.3 37 37-73 105-141 (254)
420 PF00158 Sigma54_activat: Sigm 95.4 0.026 5.6E-07 50.3 5.2 53 20-74 7-59 (168)
421 PRK13538 cytochrome c biogenes 95.4 0.011 2.5E-07 53.8 2.9 35 36-70 26-60 (204)
422 smart00763 AAA_PrkA PrkA AAA d 95.4 0.015 3.3E-07 57.8 3.9 27 37-63 78-104 (361)
423 PRK04301 radA DNA repair and r 95.4 0.021 4.6E-07 55.9 5.0 39 36-74 101-145 (317)
424 cd03295 ABC_OpuCA_Osmoprotecti 95.4 0.012 2.6E-07 55.0 3.2 26 36-61 26-51 (242)
425 PRK10895 lipopolysaccharide AB 95.4 0.01 2.3E-07 55.4 2.7 35 36-70 28-62 (241)
426 cd03253 ABCC_ATM1_transporter 95.4 0.014 3E-07 54.3 3.5 35 36-70 26-60 (236)
427 PRK11248 tauB taurine transpor 95.4 0.012 2.5E-07 55.8 3.0 35 36-70 26-60 (255)
428 TIGR01277 thiQ thiamine ABC tr 95.4 0.012 2.5E-07 54.0 2.9 35 36-70 23-57 (213)
429 PF01121 CoaE: Dephospho-CoA k 95.4 0.013 2.8E-07 52.8 3.1 41 39-85 2-42 (180)
430 PRK11701 phnK phosphonate C-P 95.4 0.012 2.5E-07 55.7 3.0 35 36-70 31-65 (258)
431 PRK15177 Vi polysaccharide exp 95.4 0.015 3.2E-07 53.6 3.6 34 36-69 12-45 (213)
432 cd04119 RJL RJL (RabJ-Like) su 95.4 0.014 3E-07 50.2 3.3 21 39-59 2-22 (168)
433 cd00071 GMPK Guanosine monopho 95.4 0.013 2.8E-07 50.2 3.0 22 40-61 2-23 (137)
434 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.4 0.014 3E-07 54.4 3.4 35 36-70 28-62 (238)
435 PRK14732 coaE dephospho-CoA ki 95.4 0.015 3.3E-07 53.0 3.6 40 40-85 2-41 (196)
436 cd03268 ABC_BcrA_bacitracin_re 95.4 0.012 2.6E-07 53.6 3.0 35 36-70 25-59 (208)
437 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.015 3.3E-07 50.1 3.4 26 36-61 25-50 (144)
438 KOG3022 Predicted ATPase, nucl 95.4 0.028 6.1E-07 53.6 5.3 41 39-79 49-90 (300)
439 PRK14734 coaE dephospho-CoA ki 95.4 0.02 4.4E-07 52.3 4.4 31 39-75 3-33 (200)
440 COG1117 PstB ABC-type phosphat 95.3 0.014 3.1E-07 53.8 3.3 26 36-62 32-57 (253)
441 PRK11264 putative amino-acid A 95.3 0.012 2.7E-07 55.1 3.0 26 36-61 28-53 (250)
442 PRK05201 hslU ATP-dependent pr 95.3 0.018 3.9E-07 58.4 4.3 44 37-87 50-93 (443)
443 cd03252 ABCC_Hemolysin The ABC 95.3 0.014 3.1E-07 54.2 3.4 35 36-70 27-61 (237)
444 PTZ00451 dephospho-CoA kinase; 95.3 0.017 3.8E-07 54.5 4.0 43 39-86 3-45 (244)
445 TIGR00174 miaA tRNA isopenteny 95.3 0.052 1.1E-06 52.5 7.3 94 40-161 2-98 (287)
446 cd03232 ABC_PDR_domain2 The pl 95.3 0.015 3.2E-07 52.6 3.4 25 36-60 32-56 (192)
447 PRK10584 putative ABC transpor 95.3 0.013 2.9E-07 54.2 3.1 26 36-61 35-60 (228)
448 TIGR01978 sufC FeS assembly AT 95.3 0.016 3.4E-07 54.1 3.6 25 36-60 25-49 (243)
449 PRK11247 ssuB aliphatic sulfon 95.3 0.013 2.7E-07 55.8 2.9 34 36-69 37-70 (257)
450 PF10443 RNA12: RNA12 protein; 95.3 0.012 2.5E-07 59.6 2.8 47 38-87 18-64 (431)
451 TIGR02323 CP_lyasePhnK phospho 95.3 0.012 2.6E-07 55.4 2.8 26 36-61 28-53 (253)
452 KOG3347 Predicted nucleotide k 95.3 0.015 3.2E-07 50.7 3.0 25 37-61 7-31 (176)
453 PRK10908 cell division protein 95.3 0.016 3.6E-07 53.3 3.7 26 36-61 27-52 (222)
454 COG1136 SalX ABC-type antimicr 95.3 0.014 3E-07 54.4 3.1 40 36-75 30-69 (226)
455 PRK13721 conjugal transfer ATP 95.3 0.022 4.7E-07 63.2 5.2 39 37-75 449-487 (844)
456 PRK08154 anaerobic benzoate ca 95.3 0.015 3.3E-07 56.8 3.6 35 35-74 131-165 (309)
457 PRK10771 thiQ thiamine transpo 95.3 0.013 2.9E-07 54.4 3.0 35 36-70 24-58 (232)
458 PRK00149 dnaA chromosomal repl 95.3 0.019 4.2E-07 59.0 4.4 37 38-74 149-187 (450)
459 PRK13975 thymidylate kinase; P 95.3 0.018 3.9E-07 51.8 3.8 24 38-61 3-26 (196)
460 cd01863 Rab18 Rab18 subfamily. 95.3 0.015 3.2E-07 50.1 3.1 22 39-60 2-23 (161)
461 PRK07993 DNA polymerase III su 95.3 0.12 2.5E-06 51.2 9.8 140 18-190 8-147 (334)
462 cd00879 Sar1 Sar1 subfamily. 95.3 0.025 5.4E-07 50.3 4.7 35 22-59 7-41 (190)
463 PLN02165 adenylate isopentenyl 95.3 0.019 4.1E-07 56.6 4.1 36 36-76 42-77 (334)
464 cd01867 Rab8_Rab10_Rab13_like 95.3 0.016 3.4E-07 50.6 3.3 23 38-60 4-26 (167)
465 cd01866 Rab2 Rab2 subfamily. 95.3 0.015 3.2E-07 50.8 3.1 22 38-59 5-26 (168)
466 cd03250 ABCC_MRP_domain1 Domai 95.3 0.016 3.4E-07 52.7 3.4 26 36-61 30-55 (204)
467 TIGR02173 cyt_kin_arch cytidyl 95.2 0.017 3.7E-07 50.5 3.4 31 39-74 2-32 (171)
468 TIGR02324 CP_lyasePhnL phospho 95.2 0.015 3.2E-07 53.7 3.2 34 36-69 33-66 (224)
469 COG3840 ThiQ ABC-type thiamine 95.2 0.021 4.5E-07 51.6 3.9 43 36-78 24-66 (231)
470 PRK14526 adenylate kinase; Pro 95.2 0.018 3.9E-07 53.2 3.7 23 39-61 2-24 (211)
471 cd03237 ABC_RNaseL_inhibitor_d 95.2 0.014 3.1E-07 55.0 3.1 27 36-62 24-50 (246)
472 TIGR03771 anch_rpt_ABC anchore 95.2 0.014 3.1E-07 54.0 3.1 26 36-61 5-30 (223)
473 cd04163 Era Era subfamily. Er 95.2 0.014 3E-07 49.7 2.7 23 37-59 3-25 (168)
474 PRK11124 artP arginine transpo 95.2 0.013 2.9E-07 54.7 2.9 26 36-61 27-52 (242)
475 TIGR01189 ccmA heme ABC export 95.2 0.018 3.9E-07 52.1 3.6 26 36-61 25-50 (198)
476 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.2 0.016 3.4E-07 50.3 3.1 22 38-59 3-24 (166)
477 PRK13873 conjugal transfer ATP 95.2 0.026 5.7E-07 62.3 5.5 38 39-76 443-481 (811)
478 cd03229 ABC_Class3 This class 95.2 0.019 4.1E-07 51.2 3.7 26 36-61 25-50 (178)
479 PRK12338 hypothetical protein; 95.2 0.016 3.4E-07 56.8 3.3 25 37-61 4-28 (319)
480 cd03248 ABCC_TAP TAP, the Tran 95.2 0.017 3.7E-07 53.3 3.5 26 36-61 39-64 (226)
481 PRK14242 phosphate transporter 95.2 0.018 3.8E-07 54.3 3.6 26 36-61 31-56 (253)
482 cd01870 RhoA_like RhoA-like su 95.2 0.017 3.7E-07 50.5 3.2 23 38-60 2-24 (175)
483 KOG0991 Replication factor C, 95.2 0.02 4.3E-07 53.6 3.7 41 36-76 47-87 (333)
484 TIGR03015 pepcterm_ATPase puta 95.2 0.025 5.3E-07 53.4 4.5 44 18-62 25-68 (269)
485 TIGR02880 cbbX_cfxQ probable R 95.2 0.027 5.9E-07 54.3 4.9 29 37-65 58-86 (284)
486 COG1134 TagH ABC-type polysacc 95.2 0.012 2.5E-07 55.3 2.2 26 36-61 52-77 (249)
487 PRK13646 cbiO cobalt transport 95.2 0.014 3.1E-07 56.2 2.9 36 36-71 32-67 (286)
488 cd03266 ABC_NatA_sodium_export 95.2 0.019 4.1E-07 52.7 3.6 35 36-70 30-64 (218)
489 PRK11608 pspF phage shock prot 95.2 0.031 6.7E-07 55.1 5.3 59 15-75 9-67 (326)
490 PRK13539 cytochrome c biogenes 95.2 0.015 3.3E-07 53.1 3.0 26 36-61 27-52 (207)
491 cd01918 HprK_C HprK/P, the bif 95.2 0.016 3.6E-07 50.5 3.0 24 37-60 14-37 (149)
492 TIGR03819 heli_sec_ATPase heli 95.2 0.048 1E-06 54.1 6.7 50 17-72 163-212 (340)
493 TIGR03783 Bac_Flav_CT_G Bacter 95.2 0.026 5.6E-07 62.3 5.2 39 37-75 438-476 (829)
494 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.016 3.6E-07 50.3 3.0 26 36-61 24-49 (157)
495 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.014 3.1E-07 54.1 2.7 26 36-61 47-72 (224)
496 COG2805 PilT Tfp pilus assembl 95.1 0.057 1.2E-06 52.3 6.8 52 11-70 107-158 (353)
497 PRK09112 DNA polymerase III su 95.1 0.27 5.7E-06 49.1 11.9 28 37-64 45-72 (351)
498 cd01128 rho_factor Transcripti 95.1 0.024 5.3E-07 53.7 4.3 29 36-64 15-43 (249)
499 PRK13645 cbiO cobalt transport 95.1 0.015 3.3E-07 56.0 3.0 35 36-70 36-70 (289)
500 PRK13631 cbiO cobalt transport 95.1 0.014 3E-07 57.4 2.7 42 36-77 51-92 (320)
No 1
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-49 Score=375.48 Aligned_cols=288 Identities=22% Similarity=0.373 Sum_probs=237.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCC---CCCCCCCCCCceeEE
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP---DLTIPCLKTPKRCYF 111 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~---~~~~~~~~~p~~~~f 111 (379)
+.+||+||+||.++||||+||+|+||+++.|++|.|+|+||||+.++.||+||+.+++.+.. ||. +.+| ..|+
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~---l~~p-LV~~ 176 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFS---LTAP-LVYN 176 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchhhCcc---cCCc-eeee
Confidence 45899999999999999999999999999999999999999999999999999999999754 555 4556 6899
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccccHHHHHHHHhhcCCCEEEEEecccc
Q 017023 112 FGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINISFE 191 (379)
Q Consensus 112 ~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G~~ll~~~i~~~~p~~Iv~l~~~~~ 191 (379)
||+++|..|+++|..++.+|++.+.+++.. +++.+.+++|||||||++|.|+..|.++|++|+.|.|++++++..
T Consensus 177 FG~~sp~~N~~LY~~~~s~La~v~~~~~~~-----n~~ar~sG~iInT~g~i~~egy~~llhai~~f~v~vviVLg~ErL 251 (415)
T KOG2749|consen 177 FGLTSPSTNLELYKALVSELAEVLKQRLSL-----NPEARVSGCIINTCGWIEGEGYAALLHAIKAFEVDVVIVLGQERL 251 (415)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHHHhcc-----CchhcccceEEeccceeccccHHHHHHHHHHcCccEEEEeccHHH
Confidence 999999999999999999999999999743 455688999999999999999999999999999999999998754
Q ss_pred cccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHhHHHHHHHHHHHHHhhhCCCCCchhhhHHhhhhhcCCCCe
Q 017023 192 KKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKELAQALAAYPPY 271 (379)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~v~v~~l~~~~~~~~~~s~~~~~~~~~~R~l~~~~YF~~~~~~~~~~~~~~~~~~~L~~~~p~ 271 (379)
...+.+. ...+..++++.+|++++ +.+|+ ...|++.|..++++||||....++.+ ..+
T Consensus 252 y~~lkk~-----~~~~~~v~vv~lpKsgG-v~~Rs---~~~r~~~r~~~I~eYFYG~~~~~lsP-------------~t~ 309 (415)
T KOG2749|consen 252 YSSLKKD-----LPPKKNVRVVKLPKSGG-VVARS---KEVRRKLRGRSIREYFYGSVRNELSP-------------FTF 309 (415)
T ss_pred HHHHHhh-----ccccccceEEEecCCCC-eEeeh---HHHHHHHhhhhHHHhcccccCCcccc-------------eeE
Confidence 3333221 01134678999999998 55665 44588999999999999966554432 126
Q ss_pred eeecCceEEEEeecCCCc-h------------------hHHHHhhccEEEEEEcCCCCCCC--CceEEEEEEeeeecCCC
Q 017023 272 QVPISSIKIRHLYCQVPR-S------------------EIFYSLNATIVGLAISSDASENL--PHCVGLGIVRGIDTLKG 330 (379)
Q Consensus 272 ~v~~~~l~i~~~~~~v~~-~------------------~~~~~Lng~iVaL~~~~~~~~~~--~~~lGlgiVr~ID~~~~ 330 (379)
.|.|+++++++++.+..| + .+-..|.+.|.|+..+.+..+++ ++++||.+|..||.+++
T Consensus 310 ~Vkf~Dl~v~riga~~~p~S~lp~g~~~e~~~~k~~~vt~~~~l~h~vLAiS~A~~~ed~Vi~S~V~Gfv~VteVd~~~~ 389 (415)
T KOG2749|consen 310 NVKFSDLTVYRIGAPQAPDSCLPLGMTRENNQLKLVPVTITERLQHHVLAISFAEEPEDNVIKSPVAGFVLVTEVDLEKR 389 (415)
T ss_pred eeecceEEEEEecCCCCCccccccccccccCceEEEecccCHHHheeeEEEEecccchhhhhcCcceeEEEEEeccchhe
Confidence 799999999998833211 1 13345777888987665444433 47899999999999999
Q ss_pred EEEEEcCCCCCCCCcccEEEEcccc
Q 017023 331 LLYVITPVPPGILEKVDLFLQGFIQ 355 (379)
Q Consensus 331 ~l~iltP~~~~~l~~v~~Lv~G~i~ 355 (379)
+|++|+|+|+.+|++ .|+.|.+.
T Consensus 390 kit~lsP~p~~LPsk--~Li~g~l~ 412 (415)
T KOG2749|consen 390 KITVLSPVPRTLPSK--ALILGDLK 412 (415)
T ss_pred eEEEecCCCCCCCcc--eEEeeeee
Confidence 999999999999998 88888764
No 2
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=100.00 E-value=2.2e-43 Score=344.11 Aligned_cols=307 Identities=25% Similarity=0.404 Sum_probs=222.7
Q ss_pred CcccChhHHHHHHHhhcc--C---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEee
Q 017023 14 AIYIPREWSDAADSIAYD--S---NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL 88 (379)
Q Consensus 14 ~~~ip~~W~~~~~~i~~~--~---~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl 88 (379)
...+|.+|.+.++.|... + .....+++||+||+|||||||+++|+|+++++|++++++|+|+||++++|||+|||
T Consensus 45 ~ve~P~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL 124 (398)
T COG1341 45 LVEVPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISL 124 (398)
T ss_pred cccCchHhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEe
Confidence 677999999999998641 1 12347899999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCCCCCCCCceeEEecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCccc-cc
Q 017023 89 TVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKG-IG 167 (379)
Q Consensus 89 ~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g-~G 167 (379)
..++++..++.. -.|...||+|++||++++.+|+.++.+|++.+++. ..-+||||+|||+| .|
T Consensus 125 ~~~~s~~~~L~~---l~~~~~~FvG~isP~~~~~~~i~~v~rL~~~a~~~-------------~~~ilIdT~GWi~G~~g 188 (398)
T COG1341 125 AFPESPVISLSE---LEPFTLYFVGSISPQGFPGRYIAGVARLVDLAKKE-------------ADFILIDTDGWIKGWGG 188 (398)
T ss_pred ecccCCCCCHHH---cCccceEEEeccCCCCChHHHHHHHHHHHHHhhcc-------------CCEEEEcCCCceeCchH
Confidence 999997654432 23446799999999999999999999999987653 23469999999999 89
Q ss_pred HHHHHHHHhhcCCCEEEEEecccccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHhHHHHHHHHHHHHHhh
Q 017023 168 YDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQ 247 (379)
Q Consensus 168 ~~ll~~~i~~~~p~~Iv~l~~~~~~~~l~~~~~~~~~~~~~~v~v~~l~~~~~~~~~~s~~~~~~~~~~R~l~~~~YF~~ 247 (379)
.+++.++++.++||+|+.++.+++...+... ++ ....++.+... ..++ +.+|+++|.+++.+||++
T Consensus 189 ~elk~~li~~ikP~~Ii~l~~~~~~~~l~~~-~~-------~~~~~~~~~~~---~~~s---R~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 189 LELKRALIDAIKPDLIIALERANELSPLLEG-VE-------SIVYLKVPDAV---APRS---REERKELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHhhcCCCEEEEeccccccchhhhc-cc-------CceEEeccccc---cccC---hhHHHHHHHHHHHHhccC
Confidence 9999999999999999999988766544431 11 11123344332 2223 678999999999999998
Q ss_pred hCCCCCc----------hhh---hHHhhhhhc-CC------CCeeeecCceEEEEeecC----CCchh----HHHHhhcc
Q 017023 248 CFPSDLN----------ITI---IKELAQALA-AY------PPYQVPISSIKIRHLYCQ----VPRSE----IFYSLNAT 299 (379)
Q Consensus 248 ~~~~~~~----------~~~---~~~~~~~L~-~~------~p~~v~~~~l~i~~~~~~----v~~~~----~~~~Lng~ 299 (379)
.....+. ++. ..+..+.+. .. .-+.+++.-+.+....+. +...+ -...+.|.
T Consensus 255 ~~~~~v~~~~~~i~g~~if~~~~i~~~~~~~l~~~i~~~~l~~~~~~~~~~~V~~d~~~~~r~~~~~~~~~v~~~~l~gl 334 (398)
T COG1341 255 SKIRTVDLDDVRIQGTPIFQGEPIDDEEEKLLEKLIKKGILHAEKCGGRPYVVKSDLEEGPRLVSGNDVRVVPSEELKGL 334 (398)
T ss_pred CceEEecchhceeecccccCCCccchhHHHhhhhhhhhccccceecCCceEEEeecccccceeecCCcEEEEChhHhccc
Confidence 3211110 110 011111111 00 011122111111111110 01111 13458899
Q ss_pred EEEEEEcCCCCCCCCceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEEccccCCc
Q 017023 300 IVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPT 358 (379)
Q Consensus 300 iVaL~~~~~~~~~~~~~lGlgiVr~ID~~~~~l~iltP~~~~~l~~v~~Lv~G~i~lP~ 358 (379)
+|||+..+ ..|+|+|+|+.||.++++++|+||+ +...++..|++|++++..
T Consensus 335 l~gl~d~~------~~~iGlGvl~~Id~~~~~~~i~t~~--~~~~~i~~i~~Gr~rlde 385 (398)
T COG1341 335 LVGLIDND------GFCIGLGVLRRIDFKENELTIYTRV--DDIGEIREIRLGRIRLDE 385 (398)
T ss_pred eEEEecCC------CcEEEEEEEEEeeccCceEEEEecc--cccCceEEEEEEEEEecc
Confidence 99998552 3799999999999999999999997 566788999999999884
No 3
>KOG2750 consensus Uncharacterized conserved protein similar to ATP/GTP-binding protein [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=324.01 Aligned_cols=352 Identities=32% Similarity=0.531 Sum_probs=239.6
Q ss_pred CCCCcccChhHHHHHHHhhc-cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEeCCCCCCCcCCCceEee
Q 017023 11 PSPAIYIPREWSDAADSIAY-DSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPGFLSL 88 (379)
Q Consensus 11 ~~~~~~ip~~W~~~~~~i~~-~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG~vSl 88 (379)
..-++..++-|+.-...+.. .......+|+|++|+|||||||++|.++|+.+ ..+..|+++|+|+||++++|+||+|+
T Consensus 180 ~~~si~~e~~~s~s~~~~~~~~k~d~~~p~im~~g~kgsgKSt~~r~~i~~~l~~~y~~v~~l~~d~gq~e~sp~g~is~ 259 (587)
T KOG2750|consen 180 SIFSISVEEYLSTSLEKLVLSLKNDYYQPRIMVIGGKGSGKSTFVRKLINEFLQDIYDHVFSLDCDEGQPEYSPPGCISL 259 (587)
T ss_pred cccccchhhhhcchhHHhhhhccccccCceeEEeccCCcccchHHHHHHHHHHHhhheEEEEEeccCCCceecCcccccc
Confidence 34455666666455554432 12233468999999999999999999999965 45667999999999999999999999
Q ss_pred eeccccCCCCCCCCC-CCCceeEEecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCccccc
Q 017023 89 TVVDTLTPDLTIPCL-KTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG 167 (379)
Q Consensus 89 ~~i~~~~~~~~~~~~-~~p~~~~f~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G 167 (379)
+.+.+|+.+-.+-+. .+-.+.+|.|. ++|.+++..++++|+......++. .....++|||+|||++|.|
T Consensus 260 ~~lssPi~~~v~~~ql~~~~l~~~~~s-------d~~~~~v~~l~~~~~~~f~~se~~---~~~~~~~IIn~pGwi~g~g 329 (587)
T KOG2750|consen 260 TKLSSPIDLKVHLCQLSNTLLQFYAGS-------DHYQREVTSLFNCYQRLFDHSEEQ---PKFFGPLIINLPGWIKGFG 329 (587)
T ss_pred ccccCccccchhhhhhchhhhhhhccc-------hhhhhhhhhHHHHHHHhccchhhc---ccccCceEEecCCcccccc
Confidence 999999764322121 22345788883 677788888888887765443322 1355789999999999999
Q ss_pred HHHHHHHHhhcCCCEEEEEecccccccCCCC----cccccCCCCcceEEEEecCCCCCCCcccccchHhHHHHHHHHHHH
Q 017023 168 YDILVDMLKYITPTHVVKINISFEKKNLPAG----AFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMA 243 (379)
Q Consensus 168 ~~ll~~~i~~~~p~~Iv~l~~~~~~~~l~~~----~~~~~~~~~~~v~v~~l~~~~~~~~~~s~~~~~~~~~~R~l~~~~ 243 (379)
++|+..+++..+|+|+|.+..+..+.+++.. -+|..........+++.++... +.....+.+++.+|.+.+.+
T Consensus 330 aell~~I~Ri~qPt~~V~~~~s~t~~~~~~l~e~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~a~~~r~l~Ils 406 (587)
T KOG2750|consen 330 AELLNHIIRIYQPTHFVEIEISNTKSHLPELGEPQHFSISGRDDFALELLPVQRASL---NHTLSSRFHAKYLRTLKILS 406 (587)
T ss_pred HHHHHhHHhhcChhheeehhhhhhccCchhcCCCceeEEecccceeEEEecchhhhc---ccccccchhHHHhhhHHHHH
Confidence 9999999999999999999987666655532 2444333333444444433221 11223467899999999999
Q ss_pred HHhhhCCCCC--chhhhHHhhhhhcCCCCeeeecC-ceEEEEeecCCCchh--HHHHhhccEEEEEEcCC----C----C
Q 017023 244 YFRQCFPSDL--NITIIKELAQALAAYPPYQVPIS-SIKIRHLYCQVPRSE--IFYSLNATIVGLAISSD----A----S 310 (379)
Q Consensus 244 YF~~~~~~~~--~~~~~~~~~~~L~~~~p~~v~~~-~l~i~~~~~~v~~~~--~~~~Lng~iVaL~~~~~----~----~ 310 (379)
||+...+... .+..-.. .+++....|+.++.. .|..-...+++.+.+ ...++|++-|..+...+ + +
T Consensus 407 y~~~~~~~~~~a~f~~~~p-~~~~~~~s~~~i~~~~~I~~~~~~Sdi~p~i~k~~~~i~as~v~~s~~~~~vs~~lg~~~ 485 (587)
T KOG2750|consen 407 YFSKNTPFDYAASFPPCLP-SAPLQISSPKGIPGIKGIQDRMEFSDLNPQIIKSALAINASDVYYSNLQDIVSKGLGNFP 485 (587)
T ss_pred HHHhhcCCchhhcccccCC-CchhhhcCccccchhhccccccchhhcchHhhhhheeecccccccccchhhhhcCCCCcc
Confidence 9998654321 0000000 011222344445432 222222334555555 44444444444332110 0 0
Q ss_pred ---CCCC---ceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEEc-cccCCcceeeccCc---ccceeccCCc
Q 017023 311 ---ENLP---HCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQG-FIQIPTCLLQVQGC---MSPYMSANVL 376 (379)
Q Consensus 311 ---~~~~---~~lGlgiVr~ID~~~~~l~iltP~~~~~l~~v~~Lv~G-~i~lP~~~~~~~~~---~~py~~~~~~ 376 (379)
+..| .|+|+|+||+||+||+.+||+||+|.+.+++|++|++| |+++|.|++..++. .+||...+..
T Consensus 486 il~~~~P~~~nciGlGIvRgID~Er~il~ivtPvpl~~i~~vd~livg~ri~lpt~fl~~~~~~~~~~pyv~~~~~ 561 (587)
T KOG2750|consen 486 ILQDCTPSSKNCIGLGIVRGIDTERRILYIVTPVPLEKIEDVDCLLVGVRIQLPTCFLDFQPYPRTRVPYVNIDYL 561 (587)
T ss_pred eecCCCcCCccceeeEEEeeeecccceEEEecCCCHHHhccCCeEEEeeeccCCcceEeccCCCcccccceecccc
Confidence 1222 49999999999999999999999999999999999888 59999999997765 6899988764
No 4
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.6e-31 Score=249.90 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=217.5
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccC----C-
Q 017023 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLT----P- 96 (379)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~----~- 96 (379)
+-+++.+.. .+-..+|+|||+|+...||||||++|++|+++.+++|+|+++||.|+.++.||+||+.+++..+ +
T Consensus 85 hf~lek~rm-~n~e~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl~~nlDP~Qp~~~~PG~iSa~h~~~ilD~q~~~ 163 (424)
T COG5623 85 HFFLEKRRM-FNYEKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPSQPGNIFPGAISAIHVDAILDCQEGL 163 (424)
T ss_pred HHHHHhhcc-cccccCCEEEEECCCcCCceeHHHHHHHHHHHhcCCceEEecCCCCcccccCccccccchhhhhhhhccc
Confidence 344455432 1122589999999999999999999999999999999999999999999999999999988732 1
Q ss_pred -------CCCCCCCCCCceeEEecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccc--c
Q 017023 97 -------DLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI--G 167 (379)
Q Consensus 97 -------~~~~~~~~~p~~~~f~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~--G 167 (379)
|.++.+.++| ..|+||.+++.+|+++|..++.+|.+.+.+|+.. ++..+.+++++|||..-.-. =
T Consensus 164 wGqSltsGaTll~~K~P-lv~nfGl~~i~eN~~LY~l~~s~L~~aV~~r~hl-----~~d~r~sgC~vdTpSIsqldEnl 237 (424)
T COG5623 164 WGQSLTSGATLLRLKNP-LVFNFGLTEITENMELYDLQTSKLQEAVKARNHL-----VEDLRLSGCPVDTPSISQLDENL 237 (424)
T ss_pred ccccccccchhhhccCc-eEEecccCccccCHHHHHHHHHHHHHHHHhhhcc-----CccceeecCccCCcchhhhhHHH
Confidence 2233456777 6899999999999999999999999999998632 23457889999999753321 1
Q ss_pred HHHHHHHHhhcCCCEEEEEecccccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHhHHHHHHHHHHHHHhh
Q 017023 168 YDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQ 247 (379)
Q Consensus 168 ~~ll~~~i~~~~p~~Iv~l~~~~~~~~l~~~~~~~~~~~~~~v~v~~l~~~~~~~~~~s~~~~~~~~~~R~l~~~~YF~~ 247 (379)
.+++..+|+.|+++.|++++++.....+... + ......+++.+++..+ ..++. ....+.++.-.+++||+|
T Consensus 238 a~~~htiI~~f~vnivvVlgsErLy~s~k~~-~----~~~~~n~iffiskldG-~~~ve---~e~~rslQrrsI~~YFyG 308 (424)
T COG5623 238 AAFYHTIIKRFEVNIVVVLGSERLYHSLKVI-A----EKLMINRIFFISKLDG-FVEVE---KEVGRSLQRRSISRYFYG 308 (424)
T ss_pred HHHHHHHHHheeeeEEEEEcchHHHHHHHHH-H----hHHhhhheeeecccCC-eeehH---HHHHHHHHHhHHHHHhcc
Confidence 4688889999999999999987432222110 0 0011224778898887 33322 223445555679999999
Q ss_pred hCCCCCchhhhHHhhhhhcCCCCeeeecCceEEEEeecC---C-----------C--chhHHHHhhccEEEEEEcCCCCC
Q 017023 248 CFPSDLNITIIKELAQALAAYPPYQVPISSIKIRHLYCQ---V-----------P--RSEIFYSLNATIVGLAISSDASE 311 (379)
Q Consensus 248 ~~~~~~~~~~~~~~~~~L~~~~p~~v~~~~l~i~~~~~~---v-----------~--~~~~~~~Lng~iVaL~~~~~~~~ 311 (379)
.....+++ -.+.|.+.++.+++.... + + ...-...|.++|.|+....+..+
T Consensus 309 s~~~~lsP-------------~t~~Vdy~~lvv~~~e~~~~nvs~~~~G~~e~~~~v~t~~~~vlqnsIlais~a~e~eD 375 (424)
T COG5623 309 SVNNELSP-------------FTFNVDYKWLVVRIGEMYVANVSALPLGSTEKVGCVETSDVEVLQNSILAISEAREIED 375 (424)
T ss_pred cCCCccCc-------------eEEeecceEEEEEEeecccCccccccccceeeeeeEecccHHHhhhheeeeehhhhccc
Confidence 76543321 113466666766653211 1 1 11224558889999876643221
Q ss_pred C----CCceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEEcccc
Q 017023 312 N----LPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ 355 (379)
Q Consensus 312 ~----~~~~lGlgiVr~ID~~~~~l~iltP~~~~~l~~v~~Lv~G~i~ 355 (379)
. -++++||++|..+|..|+++.||.|+|+.++.+ .|+.|..+
T Consensus 376 qATV~~SpIlGyv~v~~v~~~krklriL~pvP~~lps~--alI~g~~k 421 (424)
T COG5623 376 QATVAGSPILGYVVVINVGAFKRKLRILCPVPRLLPST--ALIQGDLK 421 (424)
T ss_pred cceecCCceeEEEEEEEchhhhhceeEeccCCCCCCcc--eeeeeccc
Confidence 1 247899999999999999999999999998876 67788654
No 5
>PF06807 Clp1: Pre-mRNA cleavage complex II protein Clp1; InterPro: IPR010655 This entry consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA []. This entry also includes nucleolar proteins [].; PDB: 2NPI_A.
Probab=99.97 E-value=4.3e-32 Score=246.84 Aligned_cols=190 Identities=36% Similarity=0.634 Sum_probs=108.3
Q ss_pred CCcccccHHHHHHHHhhcCCCEEEEE-ecccccccCCCCcccccCC-CCcceEEEEecCCCCCCCcccccchHhHHHHHH
Q 017023 161 GWVKGIGYDILVDMLKYITPTHVVKI-NISFEKKNLPAGAFWLDNF-EGVDVNLIEISSARQDSFNRSVLVQKDARLLRD 238 (379)
Q Consensus 161 Gwv~g~G~~ll~~~i~~~~p~~Iv~l-~~~~~~~~l~~~~~~~~~~-~~~~v~v~~l~~~~~~~~~~s~~~~~~~~~~R~ 238 (379)
|||+|+|+++|.++++.++|||||+| +.+ + ++++....+.... ....+++++++++++. ..++ +..++++|+
T Consensus 1 GWvkG~G~~lL~~ii~~~~pt~vv~l~~~~-~-~~~~~l~~~~~~~~~~~~v~vv~l~~s~g~-~~~~---~~~~~~~R~ 74 (195)
T PF06807_consen 1 GWVKGLGLELLSHIIRAFEPTHVVVLSGSP-E-RLYPDLKRDLPNKKSGWTVNVVKLPKSGGV-VERS---KLFARDLRE 74 (195)
T ss_dssp --------HHHHHHHHHTT--EEEEE--SS---CHHHHHHHHHHHHH---GGGEEEE---TT---------HHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCCCEEEEECCCc-h-hhhhhhhHhhhcccccceEEEEEecCCCCC-cccC---HHHHHHHHH
Confidence 89999999999999999999999999 431 1 1111111111110 0112778999998873 3333 567899999
Q ss_pred HHHHHHHhhhCCCCCchhhhHHhhhhhcCCCCeeeecCceEEEE-eecCCCchhHHHHhhccEEEEEEcCCCCCC--CCc
Q 017023 239 LRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRH-LYCQVPRSEIFYSLNATIVGLAISSDASEN--LPH 315 (379)
Q Consensus 239 l~~~~YF~~~~~~~~~~~~~~~~~~~L~~~~p~~v~~~~l~i~~-~~~~v~~~~~~~~Lng~iVaL~~~~~~~~~--~~~ 315 (379)
+++++|||+....++.. +....+|.+..||+++++++++.. .+.++++.++..+|||+|||||.....++. .++
T Consensus 75 ~~i~~YF~~~~~~~l~p---~~~~~~l~~~~p~~v~~~~~~l~~~~~~~~~~~~i~~~L~~sival~~~~~~~~~~~~~~ 151 (195)
T PF06807_consen 75 LRIRSYFYGCQRNPLSP---HSFTVPLSDLTPYRVPFPDSALPIGMHSDVPPSHILAALNGSIVALCSPASSPEDPLDSN 151 (195)
T ss_dssp HHHHHHHH--TTT-B-----EEEEEECCC-EEEEECCCCT---T---S-EEE---HHHHTTEEEEEESS-TT--HHTTS-
T ss_pred HHHHHHHhhccccCCCC---cccccchhHCcEEEeeccccccccccccccCHHHHHHHhhhcEEEEEecccCCCCcccCe
Confidence 99999999976544422 223457788899999999998875 677889999999999999999983222222 247
Q ss_pred eEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEEccccCCcc
Q 017023 316 CVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTC 359 (379)
Q Consensus 316 ~lGlgiVr~ID~~~~~l~iltP~~~~~l~~v~~Lv~G~i~lP~~ 359 (379)
|+|||+||+||.+++++|||||+|++.|+.+++|++|++++|.|
T Consensus 152 ~~G~~~Vr~VD~~~~~l~iLtP~p~~~L~~~~~Lv~g~i~~p~~ 195 (195)
T PF06807_consen 152 CLGFGIVRSVDEEKRKLYILTPVPGERLEPVNVLVLGSIELPDC 195 (195)
T ss_dssp EEEEEEEEEEETTTTEEEEEESSSS------SEEEEEE------
T ss_pred eEEEEEEEEEECCCCEEEEEcCCChhhcCCCCEEEEcCCcccCC
Confidence 99999999999999999999999999899999999999999986
No 6
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=99.57 E-value=9.9e-16 Score=132.49 Aligned_cols=114 Identities=30% Similarity=0.329 Sum_probs=77.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE-EEeCCCCCCCcCCCce----------EeeeeccccCCCCCCC--CCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA-YLDTDVGQPEFTAPGF----------LSLTVVDTLTPDLTIP--CLK 104 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~-~lDlD~GQ~~~~~PG~----------vSl~~i~~~~~~~~~~--~~~ 104 (379)
|+|+|||++|||||||++.|+|+|.++|++|+ +.|+|.||.++.+||+ +++...+++....... ...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~~aGA~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRFKAGADVVLVSSDEPIALETQFHQRKS 80 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHHHCT-SEEEEECSSEEEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccccccceEEEEEcCCceeeeeeccccCC
Confidence 58999999999999999999999999999988 9999999999999999 9999888843211100 001
Q ss_pred C----------CceeEEecCCCCCCChHHHHHHHH---HHHHHHHHHhhhcccCCCCCCCCCcEEEeC
Q 017023 105 T----------PKRCYFFGDVSSKRDPTAYLKYIT---TLYDYYRKEYYMFNESESPGRTELPLIVNT 159 (379)
Q Consensus 105 ~----------p~~~~f~G~~sp~~~~~~y~~~i~---~L~~~~~~~~~~~~~~~~~~~~~~~lIINT 159 (379)
. ....++.|+.++...|+ +.+++ ++.+.+..+. ..+..+..++||||
T Consensus 81 ~~L~~~~~~~~~Dlvl~eG~k~~~~~pk--i~~~~~~~~~~~~~~~~~------~~~~~~~~~~ii~~ 140 (140)
T PF03205_consen 81 MDLEELLSLLPVDLVLVEGFKSPSPNPK--IEVVRNEEELEELVKRRA------VAPKVDESGKIINT 140 (140)
T ss_dssp CBHHHHHHHCC-SEEEEESSSSGGGSCE--EEEESSCCHHHHHTCCHC------CECCHCHS-EEE--
T ss_pred CCHHHHHHhhCCCEEEEecCCCcccCCC--EEEEECccCHHHHhhhhh------hhhhhccceEEEeC
Confidence 1 23689999999888887 33333 4444433321 01234678899998
No 7
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.98 E-value=1.2e-09 Score=102.46 Aligned_cols=135 Identities=19% Similarity=0.253 Sum_probs=98.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecC
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD 114 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~ 114 (379)
..+..|+|+|..|||||||+..|..++..++.+++++++||.--+.-.|.-|- |+..+ ..+.....|-+|-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniD---IRDtV------kYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANID---IRDTV------KYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCc---hhhhh------hHHHHHHHhCCCC
Confidence 34779999999999999999999999999999999999999877765555441 11110 1122334577774
Q ss_pred CC-CCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccc-----cHHHHHHHHhhcCCCEEEEEec
Q 017023 115 VS-SKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-----GYDILVDMLKYITPTHVVKINI 188 (379)
Q Consensus 115 ~s-p~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~-----G~~ll~~~i~~~~p~~Iv~l~~ 188 (379)
+- +..+.++|...+.+.++.++++-. .-..+||||||.|+-+ |. ++.+.+....|+.|+++-+
T Consensus 88 NGgI~TsLNLF~tk~dqv~~~iek~~~----------~~~~~liDTPGQIE~FtWSAsGs-IIte~lass~ptvv~YvvD 156 (366)
T KOG1532|consen 88 NGGIVTSLNLFATKFDQVIELIEKRAE----------EFDYVLIDTPGQIEAFTWSASGS-IITETLASSFPTVVVYVVD 156 (366)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhc----------ccCEEEEcCCCceEEEEecCCcc-chHhhHhhcCCeEEEEEec
Confidence 33 445788999888888888877632 3357899999998753 54 4555566678888888775
Q ss_pred c
Q 017023 189 S 189 (379)
Q Consensus 189 ~ 189 (379)
.
T Consensus 157 t 157 (366)
T KOG1532|consen 157 T 157 (366)
T ss_pred C
Confidence 4
No 8
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.97 E-value=1.8e-10 Score=108.32 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=60.9
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCCCCCCCh
Q 017023 42 ICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDP 121 (379)
Q Consensus 42 v~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~~~ 121 (379)
|+||.||||||||+.+..++-..+++++++++||+..++..+..+. +++.+. .......|-+| |.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iD---ird~i~------~~evm~~~~LG---PNGal 68 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDID---IRDLIS------VEEVMEEYGLG---PNGAL 68 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEE---GGGT--------HHHHHTT-T-----HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHH---HHhhhh------hhhhhhhcCcC---CcHHH
Confidence 7899999999999999999999999999999999999866665553 333211 00011123444 33322
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCccccc-HHHHHHHHhhcC
Q 017023 122 TAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG-YDILVDMLKYIT 179 (379)
Q Consensus 122 ~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G-~~ll~~~i~~~~ 179 (379)
..-++....-++++.+++... ...-+||||||.++=+- .+.+..+++.++
T Consensus 69 ~~~me~l~~~~d~l~~~i~~~--------~~~y~l~DtPGQiElf~~~~~~~~i~~~L~ 119 (238)
T PF03029_consen 69 IYCMEYLEENIDWLDEEIEKY--------EDDYLLFDTPGQIELFTHSDSGRKIVERLQ 119 (238)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH--------H-SEEEEE--SSHHHHHHSHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------CCcEEEEeCCCCEEEEEechhHHHHHHHHh
Confidence 333333333334445555432 22578999999987432 234444444443
No 9
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.85 E-value=7e-09 Score=93.96 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=87.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS 117 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp 117 (379)
--++|+||.||||||||+.+.++..+.|+++-++++||.+-.|..|-++-+ +..+. +....--+-+| |
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDi---RdlIs------vdDVmEdl~~G---P 71 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDI---RDLIS------VDDVMEDLDLG---P 71 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccH---HHhcc------HHHHHHHhccC---C
Confidence 358999999999999999999999999999999999999999998887743 33211 00001113445 4
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCccccc-----HHHHHHHHh-hcCCCEEEEEec
Q 017023 118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG-----YDILVDMLK-YITPTHVVKINI 188 (379)
Q Consensus 118 ~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G-----~~ll~~~i~-~~~p~~Iv~l~~ 188 (379)
.+-..+.++...+-+++..+..- .....-+|+|+||.|+=.- -.+++++-+ .|++-.|..+++
T Consensus 72 NGgLv~cmEyl~~NldwL~~~~G--------d~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vyllds 140 (273)
T KOG1534|consen 72 NGGLVYCMEYLLENLDWLEEEIG--------DVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDS 140 (273)
T ss_pred CccchhHHHHHHHHHHHHHhhcc--------CccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEecc
Confidence 44444444444444455444321 1245689999999998643 234444444 566777777764
No 10
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=93.94 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=80.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCCCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKR 119 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~ 119 (379)
.+|+||+||||||+|.-+...+-..|+++++|++||+.-.+..|.-++...+-.. ......+=+| |.+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~---------edvm~~~~LG---PNg 72 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITV---------EDVMEELGLG---PNG 72 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccH---------HHHHHHhCCC---Cch
Confidence 5899999999999999999999999999999999999999888887765543321 0011123345 556
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccc
Q 017023 120 DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI 166 (379)
Q Consensus 120 ~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~ 166 (379)
...+.++.+..=++++++++.. .+..-+++|+||.|+=+
T Consensus 73 ~l~yc~E~l~~~idwl~~~l~~--------~~~~Y~lFDcPGQVELf 111 (290)
T KOG1533|consen 73 ALKYCMEYLEANIDWLLEKLKP--------LTDHYVLFDCPGQVELF 111 (290)
T ss_pred hHHHHHHHHHhhhHHHHHHhhh--------ccCcEEEEeCCCcEEEE
Confidence 6666677777767888887743 25567999999998753
No 11
>PRK13768 GTPase; Provisional
Probab=98.45 E-value=9.6e-07 Score=83.81 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=38.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
..++|.|+.|+||||++..++..+..+|++|+++|+||+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~ 44 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY 44 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc
Confidence 368999999999999999999999999999999999997654
No 12
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.42 E-value=8.8e-06 Score=74.69 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=52.6
Q ss_pred CCcccChhHHHHHHHhhccC----CCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHH-cCCcEEEEeCCCCCCCc
Q 017023 13 PAIYIPREWSDAADSIAYDS----NTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 13 ~~~~ip~~W~~~~~~i~~~~----~~~~~~~vlv~G~k-~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~GQ~~~ 80 (379)
+.-.+-++|+++...+.... .....++|.|+|+| |+||||++..|+-.+.+ .|++|+++|+|+..+.+
T Consensus 7 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~ 80 (207)
T TIGR03018 7 PRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSL 80 (207)
T ss_pred CCCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhh
Confidence 34446678888887765322 22346789999887 99999999999999986 69999999999987653
No 13
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.34 E-value=2.8e-06 Score=86.08 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=38.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
+.+|+++|+.||||||++.-|+.++.++|++|+++++|+-++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 568999999999999999999999988899999999998774
No 14
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.34 E-value=4.4e-06 Score=74.19 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.++++|+.|+||||+++.|+..+.+.+.+|+++|+|+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA 42 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence 57899999999999999999999999999999999985543
No 15
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.27 E-value=5.1e-06 Score=79.70 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
++.+++++|+.|+||||.+.-|+.++.+.|++|+++|+|+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3568999999999999999999999999999999999997
No 16
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=8.9e-06 Score=80.97 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
.+..++++|++|+||||++.-|+.++.+++.+|.++++|+..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4678999999999999999999999989999999999998754
No 17
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.24 E-value=3.8e-06 Score=85.61 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
.+..|+++|+.|+||||+++.|+.++.++|++|+++++|+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3668999999999999999999999999999999999998654
No 18
>PRK10867 signal recognition particle protein; Provisional
Probab=98.22 E-value=5.8e-06 Score=84.11 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=38.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPE 79 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~ 79 (379)
+..|+++|+.||||||++.-|+.++.++ |++|+++|+|+-.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 5689999999999999999999999988 999999999985443
No 19
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.21 E-value=6e-06 Score=69.12 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
|++.|..|+||||++..|+.++.+.+++|.++|+||
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999999999999999999
No 20
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.16 E-value=1.2e-05 Score=78.84 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
++.+++++|+.|+||||+++.|+.++...+++|.++|+|+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 4679999999999999999999999998899999999998554
No 21
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.15 E-value=4e-05 Score=73.25 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 36 ~~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
..++|+|.+++ |.||||++..|+-.+.+.|++|.+||+|+..+.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~ 146 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPV 146 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCcc
Confidence 45678888877 899999999999999999999999999998876
No 22
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.14 E-value=1.2e-05 Score=81.86 Aligned_cols=120 Identities=20% Similarity=0.328 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (379)
+..++++|+.||||||++.-|+.++. +.|.+|+++|+|+-.+. .+ ..+..... ...-| .+..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-----a~--~QL~~~a~-----~~gvp--~~~~~~- 163 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-----AI--EQLKVLGQ-----QVGVP--VFALGK- 163 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-----HH--HHHHHHHH-----hcCCc--eEecCC-
Confidence 55899999999999999999999986 57899999999985543 00 00111000 01112 122221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcc--cccHHHHHHHHhhcCCCEEEEEec
Q 017023 116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK--GIGYDILVDMLKYITPTHVVKINI 188 (379)
Q Consensus 116 sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~--g~G~~ll~~~i~~~~p~~Iv~l~~ 188 (379)
..+|... ..+.++....+ ....+||||+|-.. ....+-+.++.+.++|+.++.+-+
T Consensus 164 --~~~P~~i---~~~al~~~~~~------------~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvd 221 (428)
T TIGR00959 164 --GQSPVEI---ARRALEYAKEN------------GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVD 221 (428)
T ss_pred --CCCHHHH---HHHHHHHHHhc------------CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEe
Confidence 2345321 22222222111 23469999999753 234556667778888988776654
No 23
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.14 E-value=2.6e-05 Score=71.13 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=40.1
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 37 ~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.++|+|++.| |+||||++..|+..+.+.|.+|+++|+|+..+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~ 60 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSV 60 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChh
Confidence 6789999888 999999999999999999999999999998775
No 24
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.07 E-value=1.7e-05 Score=79.39 Aligned_cols=121 Identities=25% Similarity=0.430 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (379)
++.+||++|=.||||||.|--|++|+-+++++|.++-+|+--|- .+++.-. +......=|||.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA----------A~eQL~~------La~q~~v~~f~~- 161 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA----------AIEQLKQ------LAEQVGVPFFGS- 161 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH----------HHHHHHH------HHHHcCCceecC-
Confidence 46699999999999999999999999999999999999977654 3443200 000012236776
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccccHHH---HHHHHhhcCCCEEEEEecc
Q 017023 116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDI---LVDMLKYITPTHVVKINIS 189 (379)
Q Consensus 116 sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G~~l---l~~~i~~~~p~~Iv~l~~~ 189 (379)
....+|. +.+++-++..+++ ....+||||-|-.. ...+| +.++-+.++||.++.+-+.
T Consensus 162 ~~~~~Pv---~Iak~al~~ak~~------------~~DvvIvDTAGRl~-ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 162 GTEKDPV---EIAKAALEKAKEE------------GYDVVIVDTAGRLH-IDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred CCCCCHH---HHHHHHHHHHHHc------------CCCEEEEeCCCccc-ccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 3445664 3334333444332 33579999999643 23344 4556778999999877653
No 25
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.05 E-value=1.2e-05 Score=73.48 Aligned_cols=42 Identities=31% Similarity=0.354 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
|..|+++||.|+||||.+--|+.++..++++|+++-+|....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 357999999999999999999999998899999999996653
No 26
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.03 E-value=6e-05 Score=69.92 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCCCCcCCCceEeeee
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLSLTV 90 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vSl~~ 90 (379)
+|.|||--||||||++.+|+-+++.++ +.|..+|+|| ++..|+.+.+-.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp---d~nL~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP---DSNLPEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC---CCChHHhcCCCC
Confidence 689999999999999999888888776 9999999999 667888877654
No 27
>PRK14974 cell division protein FtsY; Provisional
Probab=98.03 E-value=2.2e-05 Score=77.50 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
+.+|+++|+.|+||||.++.|+.++...+.+|+++++|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 5689999999999999999999999888899999999964
No 28
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.87 E-value=2.2e-05 Score=69.45 Aligned_cols=40 Identities=33% Similarity=0.384 Sum_probs=35.2
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
|.|.+.| |+||||++..|+-.+.++|.+|+++|+|+.|+.
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~ 42 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRN 42 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence 4555555 999999999999999999999999999998765
No 29
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.87 E-value=2.5e-05 Score=73.07 Aligned_cols=42 Identities=36% Similarity=0.388 Sum_probs=37.5
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 39 ~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
+|.|++.| |+||||++..|+-.|.+.|++|+++|+|+.|+..
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~ 44 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANL 44 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccc
Confidence 57777777 8999999999999999999999999999987653
No 30
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=3e-05 Score=78.23 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH-HHcCCcEEEEeCCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL-LQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l-l~~~~~v~~lDlD~GQ~ 78 (379)
+.+++++|+.||||||++..|+..+ ++.|.+|.++++|+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4579999999999999999999765 67889999999998654
No 31
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=9.3e-05 Score=70.90 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
++.+++++|+.|+||||+++.|+..+...+.++.++++|..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 357999999999999999999999988888899999999554
No 32
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.84 E-value=2.8e-05 Score=67.85 Aligned_cols=41 Identities=34% Similarity=0.419 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
++.++|+.||||||+++.|+-++.+.+.++.++|+|++++.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~ 41 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPF 41 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC
Confidence 37899999999999999999999999999999999997643
No 33
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.83 E-value=3.4e-05 Score=67.85 Aligned_cols=45 Identities=36% Similarity=0.414 Sum_probs=38.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCc
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (379)
+.|+|++|||||||++.|+..+..+|.+|+++..|.+..++..||
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~~~d~~~ 46 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKNG 46 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccccCCCcc
Confidence 689999999999999999999988899999999986655555444
No 34
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.78 E-value=4.1e-05 Score=71.23 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=38.4
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+.|.++-.| |+||||.+..|+..+.++|.+|.++|+||.|+.
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 457777777 899999999999999999999999999999986
No 35
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=97.78 E-value=4e-05 Score=72.03 Aligned_cols=43 Identities=33% Similarity=0.438 Sum_probs=38.5
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
++|.|++.| |+||||++-.|+-.+.+.|++|+++|+|++++..
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~ 45 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNL 45 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCe
Confidence 467888877 8999999999999999999999999999987653
No 36
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.75 E-value=3.3e-05 Score=67.95 Aligned_cols=38 Identities=37% Similarity=0.458 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|.++|-.||||||+++.|..+|...|.++++||.|
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 56899999999999999999999999999999999999
No 37
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.74 E-value=4.8e-05 Score=61.56 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=34.9
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
|.|.|+| |+||||+++.|+.++.+++.++.++|+|+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 6788888 999999999999999999999999999987
No 38
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.74 E-value=5.2e-05 Score=67.47 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+..|.++|.+||||||+++.|+..+...+.++.++|.|.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4678999999999999999999999988888899999983
No 39
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.73 E-value=8.9e-05 Score=72.12 Aligned_cols=57 Identities=28% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 21 W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
..++++.+.. ....+..|.|+|+.|+|||||+..|+..+.+.+.+|.++++|+..+.
T Consensus 20 ~~~~~~~~~~--~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 20 AKQLLDRIMP--YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred HHHHHHhCCc--ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 4556666642 22347899999999999999999999999999999999999996543
No 40
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.72 E-value=4.1e-05 Score=68.53 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=34.0
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
|+|.|.| |+||||++..|+-.+.++|++|+++|+|+..+.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 4555555 999999999999999999999999999987665
No 41
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.71 E-value=9.3e-05 Score=72.90 Aligned_cols=44 Identities=30% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+.+|-|+|++|||||||+..|+..+...+++|+++.+||..+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 46799999999999999999999999999999999999998653
No 42
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.71 E-value=5.9e-05 Score=70.70 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=37.3
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
++|.|.+.| |+||||++..|+-.+.++|++|+++|+||.++
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 368888888 89999999999999999999999999999654
No 43
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.71 E-value=6.3e-05 Score=72.27 Aligned_cols=48 Identities=27% Similarity=0.220 Sum_probs=40.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEe
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
+.|-|+|.+|||||||+..|+..|.++| +|++++.|+.+.+- .||.=|
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~-~~g~Ds 49 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLN-PDGTDT 49 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCC-CCCCCc
Confidence 4689999999999999999999999998 89999999987543 566433
No 44
>CHL00175 minD septum-site determining protein; Validated
Probab=97.69 E-value=6.4e-05 Score=72.09 Aligned_cols=44 Identities=30% Similarity=0.374 Sum_probs=39.4
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 37 ~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
+.+|.|+|+| |+||||++..|+-.|.+.|++|+++|+|++++..
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l 59 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNL 59 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCh
Confidence 4588888877 8999999999999999999999999999987753
No 45
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00017 Score=71.18 Aligned_cols=123 Identities=25% Similarity=0.343 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecC
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD 114 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~ 114 (379)
..+.+||++|-.|+||||.|.-|++|.-++|++|+++-.|.=- +..+++.-. +. .-.+.=|||+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR----------agAfDQLkq--nA----~k~~iP~ygs 162 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR----------AGAFDQLKQ--NA----TKARVPFYGS 162 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc----------cchHHHHHH--Hh----HhhCCeeEec
Confidence 3467999999999999999999999999999999999888422 223343210 00 0123458887
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccc-c-HHHHHHHHhhcCCCEEEEEecc
Q 017023 115 VSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-G-YDILVDMLKYITPTHVVKINIS 189 (379)
Q Consensus 115 ~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~-G-~~ll~~~i~~~~p~~Iv~l~~~ 189 (379)
.+-. +|. ....+=.+.+++. +-.-+|+||.|--+-. + .+-+.++.++++||.||.+-+.
T Consensus 163 yte~-dpv---~ia~egv~~fKke------------~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDa 223 (483)
T KOG0780|consen 163 YTEA-DPV---KIASEGVDRFKKE------------NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDA 223 (483)
T ss_pred cccc-chH---HHHHHHHHHHHhc------------CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 5532 332 2223333344332 3346899999975532 2 3556678889999999877654
No 46
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.67 E-value=6.7e-05 Score=56.64 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
|+|+|+.||||||+++.|.+++ .+.++.++|-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 7899999999999999999998 6678888876
No 47
>PRK10818 cell division inhibitor MinD; Provisional
Probab=97.66 E-value=7.6e-05 Score=71.02 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=38.9
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
.+|.|++.| |+||||++-.|+-.+.++|++|+++|+|+++++.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~ 46 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL 46 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCCh
Confidence 468888888 8999999999999999999999999999987763
No 48
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.65 E-value=7.8e-05 Score=65.98 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=35.1
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
|.|+++| |+||||++..|+-++.+.|++|.++|+|+..+.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~ 42 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS 42 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 5666666 999999999999999999999999999996643
No 49
>PRK07667 uridine kinase; Provisional
Probab=97.64 E-value=0.00013 Score=66.22 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=40.7
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+++.+.+.. ..+..|.|.|+.||||||+++.|+..+-+.+.++.++++|-
T Consensus 5 ~~~~~~~~~~--~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 5 ELINIMKKHK--ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred HHHHHHHhcC--CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4455554322 23578999999999999999999999988888999999984
No 50
>PHA02518 ParA-like protein; Provisional
Probab=97.63 E-value=9.8e-05 Score=67.17 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=35.8
Q ss_pred EEEEEcCCC-CcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 39 IAFICGAKN-CGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 39 ~vlv~G~k~-sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+|.|.+.|| +||||++..|+-+|.++|++|+++|+|+-.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 688999995 999999999999999999999999999843
No 51
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.62 E-value=0.00035 Score=75.98 Aligned_cols=44 Identities=34% Similarity=0.457 Sum_probs=40.9
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 36 ~~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
++.+|+|.|.+ |.||||++..|+..+...|.+|.+||+|+..+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~ 574 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY 574 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 46799999988 999999999999999999999999999999775
No 52
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=5.5e-05 Score=62.41 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+..++|+|+.|+||||+++.|++.+...+..+.+++++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 468999999999999999999999977665677776653
No 53
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.60 E-value=0.0001 Score=69.90 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=37.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+|.|+|--|+||||+|..|+-.|.++|++|+++|+||..+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 357778866999999999999999999999999999997554
No 54
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.59 E-value=0.00014 Score=64.31 Aligned_cols=47 Identities=28% Similarity=0.371 Sum_probs=39.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCc
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (379)
+.+.|+|.+||||||+++.|+..+-..|.+|.++..|...-++-.||
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g 48 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPG 48 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCcc
Confidence 47899999999999999999999988899999998876654433344
No 55
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=97.59 E-value=0.00014 Score=73.62 Aligned_cols=41 Identities=32% Similarity=0.316 Sum_probs=36.8
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+|.|...| |+||||++-.|+-.|...|++|++||+|| |+.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp-Q~~ 163 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP-QAS 163 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC-CCC
Confidence 567888777 89999999999999999999999999999 554
No 56
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.58 E-value=0.00011 Score=65.34 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..|+++|+.||||||+++.|++++-..+..+.++|.|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 467899999999999999999999998777888888755
No 57
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=8.6e-05 Score=61.52 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+|+|+|+.||||||+|+.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 58
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.57 E-value=0.00012 Score=68.48 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=36.1
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
++|.|.++| |+||||++..|+-.+.++|++|+++|+|+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 468888888 999999999999999999999999999994
No 59
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.57 E-value=0.00011 Score=70.83 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEeCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDVGQ 77 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~GQ 77 (379)
.+..++++|+.|+||||++..|+.++... + ++|+++++|+-.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35689999999999999999999999865 4 899999999744
No 60
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.56 E-value=0.00013 Score=69.03 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=44.6
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
...++++++... +....+|=|.|+.|+|||||.-.|..++.+.|.+|++|-.||..+.
T Consensus 14 ~~~~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 14 EARELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp HHHHHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC
T ss_pred HHHHHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC
Confidence 566777777632 2346799999999999999999999999999999999999998653
No 61
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=97.55 E-value=0.00011 Score=73.84 Aligned_cols=43 Identities=30% Similarity=0.323 Sum_probs=38.2
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 37 ~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
..+|.|.+.| |+||||+|..|+-.|.+.|++|++||+|| |+..
T Consensus 104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp-Q~~l 147 (387)
T TIGR03453 104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP-QASL 147 (387)
T ss_pred ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC-CCCH
Confidence 3578888888 89999999999999999999999999998 7753
No 62
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00014 Score=72.86 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=45.9
Q ss_pred hhHHHHHHHhhc----c-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 19 REWSDAADSIAY----D-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 19 ~~W~~~~~~i~~----~-~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+.|+.+++.+.. . .....+.+|+++|+.|+||||++..|+.++...+.+|.++++|+.+
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred HHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 356666665431 0 1112357999999999999999999999999999999999999765
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.53 E-value=0.00019 Score=59.87 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+..++|.|+.|+||||+++.+++.+...+..+++++++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 568999999999999999999999987777787777643
No 64
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.53 E-value=0.00027 Score=77.09 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=39.6
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 36 ~~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+.+|+|++++ |+||||++..|+-.+.+.|++|.++|+|+.++.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~ 589 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAA 589 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchh
Confidence 45678888887 899999999999999999999999999999875
No 65
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=97.52 E-value=0.00028 Score=69.17 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 36 ~~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+.+|.|+|.| |+||||++-.|+-.+.++|++|+++|+|+..+.
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGG 136 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 46799999988 899999999999999999999999999998765
No 66
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00015 Score=64.53 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+.+|-+.|-.||||||++..|..+|..+|+.+++||.|
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGD 60 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecCh
Confidence 467999999999999999999999999999999999999
No 67
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.50 E-value=0.00015 Score=69.45 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=36.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
.+|.|+|--|+||||+|..|+-.|.+.|++|+++|+||+.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n 42 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKAD 42 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccc
Confidence 36788887799999999999999999999999999999744
No 68
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.50 E-value=0.00017 Score=68.73 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+|.|+|--|+||||++..|+-.|.++|++|+++|+|| |..
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp-q~~ 43 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP-KHD 43 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC-Ccc
Confidence 46777774499999999999999999999999999998 544
No 69
>PRK06696 uridine kinase; Validated
Probab=97.49 E-value=0.00025 Score=65.90 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..|.|.|+.|||||||++.|+..+-..|..++.+-+|
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~D 59 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASID 59 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 467999999999999999999999986666677765555
No 70
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=97.49 E-value=0.00023 Score=71.77 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeC-CCCCCCc
Q 017023 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDT-DVGQPEF 80 (379)
Q Consensus 37 ~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDl-D~GQ~~~ 80 (379)
..+|.|+..| |+||||.+-.|+..|.+.|++|++||+ || |+..
T Consensus 106 ~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~Dp-Q~nl 150 (388)
T PRK13705 106 PPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDP-QGTA 150 (388)
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCC-CCch
Confidence 4677788888 899999999999999999999999996 87 5543
No 71
>PRK08118 topology modulation protein; Reviewed
Probab=97.48 E-value=9.3e-05 Score=65.81 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++|+|+|+.|||||||++.|.+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999997
No 72
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.47 E-value=0.0002 Score=65.82 Aligned_cols=39 Identities=31% Similarity=0.266 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+|.|.|--|+||||++-.|+-.|.+.|++|.++|+||+-
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 578889779999999999999999999999999999884
No 73
>PRK06762 hypothetical protein; Provisional
Probab=97.45 E-value=0.00014 Score=63.97 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|+|+|+.||||||+++.|.+++ +..+.+++.|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D 36 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQD 36 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHH
Confidence 3578999999999999999999997 3467777755
No 74
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=97.42 E-value=0.00013 Score=68.42 Aligned_cols=41 Identities=34% Similarity=0.462 Sum_probs=30.8
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
|+|..+| |+||||.+-.|+-.|+++|.+|.++|+|..|+.+
T Consensus 3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~ 44 (261)
T PF09140_consen 3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSL 44 (261)
T ss_dssp EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCH
Confidence 4555555 8999999999999999999999999999999864
No 75
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.00039 Score=62.27 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+.+.|+|++|||||||++.|+..+-..+.+|+.+--|.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 568999999999999999999999887788888876543
No 76
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=97.40 E-value=0.00026 Score=66.58 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=38.0
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
.+++|+|+| |+||||+++.|+-++...+.+|.++|+||.++.+
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 466777666 8999999999999999999999999999998764
No 77
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.40 E-value=0.0002 Score=62.37 Aligned_cols=37 Identities=35% Similarity=0.514 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.|+|+|..||||||+++.|..++...+.++.++|.|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 3789999999999999999999988888888888774
No 78
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.40 E-value=0.00024 Score=64.65 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
++..|.++|..||||||+++.|...+...+..++++|.|.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 4679999999999999999999999988888899999885
No 79
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.40 E-value=0.00024 Score=61.02 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=35.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
++|+|+.|+||||+++.++..+...+.++.|++.+..-.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 789999999999999999999999899999999986644
No 80
>PRK11519 tyrosine kinase; Provisional
Probab=97.40 E-value=0.0012 Score=71.84 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=40.7
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 36 ~~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
+..+|+|++.+ |.||||++..|+..+...|.+|.+||+|+..+.+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~ 570 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT 570 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcH
Confidence 46789999966 9999999999999999999999999999998753
No 81
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.40 E-value=0.00034 Score=61.92 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=39.4
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
++|+++.+.+. ......++.++|.|+.|+||||+++.+..++.+.+.-++.++++....
T Consensus 7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~~ 65 (185)
T PF13191_consen 7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSER 65 (185)
T ss_dssp HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTTS
T ss_pred HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecccc
Confidence 46777777663 222334689999999999999999999999987755588888888743
No 82
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.39 E-value=0.00034 Score=57.30 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=36.7
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCCCC
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPE 79 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~ 79 (379)
|.|+|.| |+||||.+..|+-.+.+. |++|.++|+|+.++.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~ 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC
Confidence 5677777 899999999999999998 999999999999886
No 83
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.38 E-value=0.00038 Score=64.12 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=40.3
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
..-+.+.+.... ..+..++++|+.|+||||+++.+++++.+.+.++.|++++
T Consensus 24 ~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 24 ELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 355555554321 1256799999999999999999999998888889998875
No 84
>PF13173 AAA_14: AAA domain
Probab=97.37 E-value=0.00024 Score=59.99 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=32.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+.++|.|+++|||||+++.++..+. ...++.|+|+|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC
Confidence 46899999999999999999999987 45678888876
No 85
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.37 E-value=0.00028 Score=55.13 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
+++.|.+|+||||+++.|+..+.+.|.+|.++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 688999999999999999999999999999999
No 86
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.37 E-value=0.00028 Score=66.68 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=36.8
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHH-HcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~ 79 (379)
.+|-|+..| |+||||++-.|+.+|. ..|++|+++|+||.++-
T Consensus 3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~ 46 (259)
T COG1192 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSL 46 (259)
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchh
Confidence 468888888 8999999999999999 55699999999998653
No 87
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.37 E-value=0.00028 Score=64.65 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+.+|.|+|+.|||||||++.|...+ .+..+.+++.|.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~ 42 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDS 42 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCc
Confidence 46799999999999999999999987 455788888774
No 88
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.36 E-value=0.00024 Score=63.86 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
|.|+|+.||||||||+.|+..+-..+.++.++.+|
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 78999999999999999999998888888888877
No 89
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=97.36 E-value=0.00032 Score=67.00 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=37.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.|.|.|--|+||||+|..|+-.|.++|++|+++|+||+.+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 47788977999999999999999999999999999998764
No 90
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.35 E-value=0.00072 Score=67.63 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=52.0
Q ss_pred CCCCcccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 11 PSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 11 ~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
.+-.+..|++|+.+.... .+..+...+.|-|+|.+|||||||+..|+..|-++|++|+++--|...
T Consensus 180 ~~~nINTpeDl~~l~~~~-~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 180 AFFNVNTPEDLEQLRAIP-DGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred ccccCCCHHHHHHHhhhh-hcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 456888999998775433 221222367999999999999999999999999999999998876443
No 91
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.34 E-value=0.00024 Score=63.22 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=31.5
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 40 vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
|.|.++| |+||||++..|+-.+ .+|+++|+|++++.
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~ 38 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPN 38 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCc
Confidence 5666666 999999999999988 68999999999876
No 92
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.34 E-value=0.00024 Score=64.47 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=30.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
|.|+|+.|||||||++.|.+.+ .+.++.++..|-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 7899999999999999999987 556788888884
No 93
>PRK05439 pantothenate kinase; Provisional
Probab=97.34 E-value=0.00056 Score=66.80 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEeCC
Q 017023 21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD 74 (379)
Q Consensus 21 W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~--~~~~v~~lDlD 74 (379)
+..++..+........+..|.|.|+.||||||+|+.|...+-+ .+.+|.++-+|
T Consensus 70 ~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D 125 (311)
T PRK05439 70 LQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD 125 (311)
T ss_pred HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence 4444444432122334678999999999999999999987644 24567777666
No 94
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.34 E-value=0.00036 Score=66.38 Aligned_cols=39 Identities=31% Similarity=0.340 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+|.|.|--|+||||+|..|+-.|.++|++|.++|+||+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 577888669999999999999999999999999999853
No 95
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.32 E-value=0.00046 Score=61.05 Aligned_cols=49 Identities=35% Similarity=0.339 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCce
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF 85 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~ 85 (379)
.+.+-|+|.||||||||+.-|+..|-.+|++|+++--+....++-.||-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~Gk 50 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGK 50 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCC
Confidence 3578899999999999999999999999999999877666555444443
No 96
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.31 E-value=0.0004 Score=63.44 Aligned_cols=39 Identities=33% Similarity=0.399 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..++|+|+.|||||+||..++..+.+.+.+|+|+|++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 467999999999999999999999999989999999997
No 97
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.31 E-value=0.0061 Score=58.33 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=36.5
Q ss_pred CEEEE-EcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFI-CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv-~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+|+| .|.-|.||||.+..|+..+.+.|++|.++|+|...+.
T Consensus 58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps 100 (265)
T COG0489 58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPS 100 (265)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCc
Confidence 34555 4555999999999999999999999999999998876
No 98
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.29 E-value=0.00061 Score=65.96 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~ 75 (379)
.+..|.|+|+.|||||||++.|...+-+. +.+|.++..|-
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 46789999999999999999998776432 34577777664
No 99
>PRK10037 cell division protein; Provisional
Probab=97.29 E-value=0.00038 Score=65.73 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=35.4
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 39 ~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
+|.|++.| |+||||++..|+-.|.++|++|+++|+|+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 67888888 899999999999999999999999999994
No 100
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.001 Score=71.91 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CcEEEEeCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRY-KKVAYLDTDVG 76 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll-~~~-~~v~~lDlD~G 76 (379)
+.+|+++|+.|+||||.+..|+.++. ..| ++|+++++|.-
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 56899999999999999999999884 555 58999999953
No 101
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.00043 Score=70.58 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEeCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQ 77 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ 77 (379)
+.+++++||.|+||||++..|+.++. +.+.+|+++|+|+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 56899999999999999999999886 567899999999864
No 102
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.24 E-value=0.0005 Score=65.70 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=36.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+|-|+|--|+||||++-.|+-.|.+.|++|.++|+||+.+.
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 56677766999999999999999999999999999999775
No 103
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.24 E-value=0.00051 Score=66.51 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=37.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+|.|.|--|+||||++..|+-.|.+.|++|.++|+||+.+.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~ 42 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDS 42 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcc
Confidence 48899977999999999999999999999999999999654
No 104
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.22 E-value=0.0004 Score=62.99 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~ 67 (379)
.|.|+|+.||||||||+.|...|-+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 48899999999999999999999766654
No 105
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.21 E-value=0.00054 Score=65.14 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=34.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+|.|.|--|+||||+|-.|+-.|.+.|++|.++|+||+-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 466677559999999999999999999999999999953
No 106
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.21 E-value=0.00057 Score=62.88 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=41.4
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
.+|.+.... -..+..++|.|+.||||||||..++..+...+.+|+|+|.|-.
T Consensus 7 ~LD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 7 GLDELLGGG-VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred HHHHHhcCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 345554322 2346789999999999999999999999999999999998643
No 107
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.20 E-value=0.00045 Score=64.23 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEeCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD 74 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~--~~~~v~~lDlD 74 (379)
|.|+|+.|||||||++.|++.+-. .+.++.++-+|
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 679999999999999999998754 34556666666
No 108
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.20 E-value=0.00041 Score=65.41 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=32.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
|+++|..||||||+++.|+.++-..+..+.+++.|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 789999999999999999999877788888887774
No 109
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.20 E-value=0.0006 Score=63.08 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=38.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+++.|..|+||||++..|+-++.++|+++.++|+|+.++.
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~ 41 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNL 41 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCccc
Confidence 6889999999999999999999999999999999999974
No 110
>PRK06217 hypothetical protein; Validated
Probab=97.19 E-value=0.00035 Score=62.78 Aligned_cols=32 Identities=38% Similarity=0.432 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+|+|+|..||||||+++.|+..+ + .-++|+|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l---~--~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL---D--IPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc---C--CcEEEcC
Confidence 369999999999999999999886 2 3477777
No 111
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.00036 Score=62.18 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.+|+|+|+.|||||||++.|+..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998764
No 112
>PRK15453 phosphoribulokinase; Provisional
Probab=97.18 E-value=0.00063 Score=65.36 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.++.|.|.|+.||||||+++.|+..+-+.+.++.+++.|-
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~ 43 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS 43 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 4689999999999999999999987766666789999884
No 113
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.0005 Score=57.20 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017023 40 AFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~l 61 (379)
|++.|++|+||||+++.+++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999997
No 114
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.0003 Score=59.82 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.|+++|+.|||||||++.|+..+ ...+++.|-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHH
Confidence 48999999999999999998776 267788875
No 115
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=97.18 E-value=0.00066 Score=64.89 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+|.|.|--|+||||+|-.|+-.|.+.|++|.++|+||+.+.
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 56677755999999999999999999999999999999764
No 116
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.17 E-value=0.00064 Score=64.05 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=38.2
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
++|.|+|.| |+||||++..|+-.|.+.|++|..||+||-.-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~ 43 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNL 43 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 579999999 89999999999999999999999999999654
No 117
>COG4240 Predicted kinase [General function prediction only]
Probab=97.17 E-value=0.00083 Score=62.23 Aligned_cols=55 Identities=27% Similarity=0.274 Sum_probs=42.5
Q ss_pred hHHHHHHHhhccC-CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEeCC
Q 017023 20 EWSDAADSIAYDS-NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTD 74 (379)
Q Consensus 20 ~W~~~~~~i~~~~-~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~-~~v~~lDlD 74 (379)
-|...+++++.-. .+..+..+-|+||.||||||++-.|.+.|.++| ++++.+.+|
T Consensus 32 l~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 32 LHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred HHHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 3556666654321 223367999999999999999999999999988 688888776
No 118
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.17 E-value=0.00073 Score=62.54 Aligned_cols=50 Identities=28% Similarity=0.313 Sum_probs=41.3
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+|.+..+. -..+..++|.|+.|+||||||..++..+++.+.+|+|+|++
T Consensus 11 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGG-FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 355555322 23467999999999999999999999999999999999998
No 119
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.16 E-value=0.0011 Score=61.32 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=43.2
Q ss_pred ChhHHHHHHHhhcc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 18 PREWSDAADSIAYD-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 18 p~~W~~~~~~i~~~-~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
+...+.++..+..- ........++++|++|+|||++++.+++.+.+.+..+.|++++-.
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 44444555554321 111234579999999999999999999999999999999998643
No 120
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=97.16 E-value=0.0011 Score=66.70 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=45.7
Q ss_pred CcccCh--hHHHHHHHhhccCCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeC-CCCCCCc
Q 017023 14 AIYIPR--EWSDAADSIAYDSNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDT-DVGQPEF 80 (379)
Q Consensus 14 ~~~ip~--~W~~~~~~i~~~~~~~~~~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDl-D~GQ~~~ 80 (379)
.+.+.+ +|.+.......-.......+|.|+..| |+||||.+-.|+-.|...|++|++||+ || |+..
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~Dp-Q~nl 150 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP-QGTA 150 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCC-CCCc
Confidence 355555 566655432110011123577788888 899999999999999999999999997 76 5543
No 121
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.16 E-value=0.00074 Score=66.54 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+.++|+|+|--|+||||++..|+..+.++|++|.++|+|+.++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 346788999988999999999999999999999999999999865
No 122
>PRK03839 putative kinase; Provisional
Probab=97.16 E-value=0.00043 Score=61.83 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+|+|+|+.||||||+++.|++.+ ...++|+|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehh
Confidence 69999999999999999999997 35677776
No 123
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.15 E-value=0.00072 Score=60.61 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+..+.++|..||||||+++.|...+...+..+.++|.|.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 4679999999999999999999999887777888888764
No 124
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0013 Score=63.17 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=45.9
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+++..+. ..+..+.+|=|.|..|+|||||.--|.-.+.+.|.+|+++-.||..+-
T Consensus 39 ~ll~~l~--p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 39 ELLRALY--PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred HHHHHHh--hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 4444443 223447799999999999999999999999999999999999998765
No 125
>PRK13949 shikimate kinase; Provisional
Probab=97.09 E-value=0.00045 Score=61.52 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+|+|+|+.||||||++|.|++.+ ..-++|+|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCCeeccc
Confidence 69999999999999999999987 35678887
No 126
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0014 Score=68.08 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=45.8
Q ss_pred ChhHHHHHHHhhccC------CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCCCCC
Q 017023 18 PREWSDAADSIAYDS------NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQ 77 (379)
Q Consensus 18 p~~W~~~~~~i~~~~------~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ 77 (379)
.+.|..+.+.|...- .-..+.+|+|+|+.|+||||++..|+.++... +++|.++++|...
T Consensus 325 ~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 325 HRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred hhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 356877777664311 11246799999999999999999999988765 4689999999754
No 127
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=97.08 E-value=0.00093 Score=64.93 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+|.|.|--|+||||.+-.|+-.|.++|++|.++|+||+.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDS 42 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCc
Confidence 46677877999999999999999999999999999998764
No 128
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.08 E-value=0.00074 Score=64.41 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=33.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
|.|+|+.||||||+++.|...+-+.+.++++++.|-
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~ 37 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDS 37 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 789999999999999999999977788899999994
No 129
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.07 E-value=0.00097 Score=62.53 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+.++++||.|+|||++++.++|.+.+.+.++.|+.+|-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 467999999999999999999999998899999998864
No 130
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.06 E-value=0.00052 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQ 63 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~ 63 (379)
||+|+|++|||||||.+.|++.-..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 6999999999999999999877543
No 131
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.05 E-value=0.0009 Score=59.60 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
++|.|+.|+|||+|+..++...++.|.+|.|+.++-..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 79999999999999999999999999999999987543
No 132
>PRK08233 hypothetical protein; Provisional
Probab=97.04 E-value=0.0007 Score=60.02 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|.|.|++||||||+|+.|+..+- ...+..+|.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCE
Confidence 46899999999999999999998762 2356666665
No 133
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.00098 Score=67.09 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ----RYKKVAYLDTDVGQ 77 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~----~~~~v~~lDlD~GQ 77 (379)
+..|+++|+.|+||||.+.-|++++.. .+.+|+++++|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 568999999999999999999998863 47899999999754
No 134
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=97.02 E-value=0.001 Score=63.46 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=36.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~GQ~~ 79 (379)
.+|.|+|--|+||||++..|+-.|.+ .|++|.++|+||+-+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 46777765599999999999999997 5999999999998654
No 135
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.00 E-value=0.00078 Score=59.10 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|+++|+.||||||+++.|+..+ ...++|.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence 5789999999999999999999997 34566776
No 136
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.00 E-value=0.0013 Score=69.45 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=43.8
Q ss_pred cccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEeCCCC
Q 017023 15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG 76 (379)
Q Consensus 15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G 76 (379)
+.-|+-|+.+.+... .+...+..|+++|..||||||+++.|+.++-. .+..+.++|.|.-
T Consensus 372 f~rpeV~~iL~~~~~--~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 372 FSFPEVVAELRRTYP--PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred hcHHHHHHHHHHHhc--cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 334445663333222 23334679999999999999999999999976 7778999999943
No 137
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.99 E-value=0.00084 Score=66.34 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=33.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEeCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVG 76 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~G 76 (379)
+.++|..|+||||+++.|.+++. ..|++|+++|.|--
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~ 39 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI 39 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence 57899999999999999999997 58999999999943
No 138
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00064 Score=61.18 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+|+|+|++||||||+|+.|++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999993
No 139
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.99 E-value=0.0014 Score=61.32 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
.+..++|.|+.|+||||||..++..+++++.+++|+..+-..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT 64 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 356899999999999999877777788889999999876543
No 140
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.98 E-value=0.0017 Score=61.76 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=42.2
Q ss_pred ccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+++.|.+.+...... +..|+|+|+.||||||+.+.|+.++-....+++.++ |+..-.
T Consensus 111 ~~~~~~~~~l~~~v~~-----~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~~E~~ 168 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRG-----RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DPPELR 168 (270)
T ss_dssp HCHHHHHHHHHHCHHT-----TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SSS-S-
T ss_pred hhHHHHHHHHhhcccc-----ceEEEEECCCccccchHHHHHhhhccccccceEEec-ccccee
Confidence 4556777777655321 457999999999999999999998766557888888 544333
No 141
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=96.97 E-value=0.0014 Score=63.61 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=37.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+|.|.|--|+||||.+..|+-.|.+.|++|+++|+||+.+.
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 356566777999999999999999999999999999998765
No 142
>PRK14530 adenylate kinase; Provisional
Probab=96.96 E-value=0.00093 Score=61.57 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+++|+|+|++||||||+++.|+..+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999886
No 143
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=96.95 E-value=0.0015 Score=56.57 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=34.2
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.|.|+|++ |+||||++..|+..+.+++++|+++|+|...+.
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 58899966 999999999999999999999999999998875
No 144
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.94 E-value=0.0027 Score=61.77 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCCCCCCCcCCCceEe
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
...++|+|+.|||||||++.|++++-.. ..+++.++ |+..-.+..|..+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE-d~~El~~~~~~~v~ 183 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE-DTRELQCAAPNVVQ 183 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC-CchhhcCCCCCEEE
Confidence 3579999999999999999999988653 56677776 44443332334443
No 145
>PRK09183 transposase/IS protein; Provisional
Probab=96.94 E-value=0.0019 Score=61.61 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+..++++||.|+|||+|+..|++.+...|++|.|+++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 5679999999999999999999999999999999874
No 146
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.94 E-value=0.0015 Score=60.91 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..++|.|+.|+|||||+..++...++++.+|+|++++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 467899999999999999999998888899999999996
No 147
>PRK06547 hypothetical protein; Provisional
Probab=96.94 E-value=0.001 Score=59.56 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
....|+|.|+.||||||+++.|++.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999873
No 148
>PRK11670 antiporter inner membrane protein; Provisional
Probab=96.94 E-value=0.0015 Score=65.43 Aligned_cols=42 Identities=29% Similarity=0.356 Sum_probs=37.6
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+|.|..+| |+||||++-.|+-.|.+.|++|.++|+|+.-+.
T Consensus 108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps 150 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPS 150 (369)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 467777666 899999999999999999999999999998875
No 149
>PRK00625 shikimate kinase; Provisional
Probab=96.94 E-value=0.00082 Score=60.18 Aligned_cols=31 Identities=39% Similarity=0.830 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.|+++|..||||||+++.|++++ ..-++|+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhh
Confidence 58999999999999999999997 35678888
No 150
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.94 E-value=0.0007 Score=59.32 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
|+++|+.||||||+++.|.+.+ ...++|.|-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCcc
Confidence 4789999999999999999997 245677764
No 151
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.92 E-value=0.0014 Score=67.69 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRY-KKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll-~~~-~~v~~lDlD~ 75 (379)
.+.+++++|+.|+||||.+..|+.++. +.| .+|.++++|+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 357999999999999999999999985 455 4899999997
No 152
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.91 E-value=0.0015 Score=62.23 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..++|.|+.|+||||||..++-..+++|.+++|++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 467999999999999999999988888889999999997
No 153
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0036 Score=57.34 Aligned_cols=109 Identities=22% Similarity=0.319 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS 117 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp 117 (379)
|-|++.|.+|||||||++-|+.-|-.+++.|+.+.-|-.-.. ..++- .|-. .
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i----------~~DEs-----lpi~----k--------- 53 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGI----------LWDES-----LPIL----K--------- 53 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhe----------ecccc-----cchH----H---------
Confidence 468999999999999999999999888888887766522111 11110 0000 0
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccccHHHHHHHHhhcCCCEEEEEec
Q 017023 118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINI 188 (379)
Q Consensus 118 ~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G~~ll~~~i~~~~p~~Iv~l~~ 188 (379)
+.--+.+.+.+.++++.. ..+.-+|+|.--+++|+-++|..+.-+.-.+--||++..
T Consensus 54 e~yres~~ks~~rlldSa--------------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~ 110 (261)
T COG4088 54 EVYRESFLKSVERLLDSA--------------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHH--------------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 000122223333333221 134568999999999999999888777666666666543
No 154
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.90 E-value=0.0015 Score=60.94 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE-EeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY-LDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~-lDlD 74 (379)
.+..|.|+|+.|||||||++.|++.+-..+..+.+ +.+|
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 46799999999999999999999998877666655 5555
No 155
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.90 E-value=0.00095 Score=57.56 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
++++|+.||||||+++.|.+.+ ...++|.|.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL-----GAPFIDGDD 32 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcc
Confidence 7899999999999999999884 346677774
No 156
>PRK06893 DNA replication initiation factor; Validated
Probab=96.89 E-value=0.0027 Score=59.27 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+.++++|++|+|||+|++.++|.+.+++.++.|++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 46789999999999999999999999999999999985
No 157
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.89 E-value=0.00075 Score=64.07 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
.+|.|.|--|+||||+|..|+-.|.+.| +|.++|+||+-+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~ 42 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD 42 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence 3567777559999999999999999999 999999999854
No 158
>PRK05642 DNA replication initiation factor; Validated
Probab=96.89 E-value=0.002 Score=60.37 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=34.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
..++++|+.|+|||.|++.++|.+.+++.+|.|++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 5688999999999999999999999888999999875
No 159
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.87 E-value=0.0023 Score=54.86 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=34.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 41 FICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 41 lv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
+.-|..|+||||++..|+-++..+|.++.++|+|++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~ 43 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL 43 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC
Confidence 4455669999999999999999999999999999977654
No 160
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.87 E-value=0.0021 Score=61.45 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=45.4
Q ss_pred cccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEe
Q 017023 15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
+..+++..+.+..+.... ...|+|+|+.||||||+.+.|++++...+.+++.++ || .|+..||...
T Consensus 62 lg~~~~~~~~l~~~~~~~----~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp--~E~~~~~~~q 127 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP----HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP--VEYQIPGINQ 127 (264)
T ss_pred cCCCHHHHHHHHHHHhcC----CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC--ceecCCCceE
Confidence 345665556665554322 357999999999999999999999866566777776 33 3555566443
No 161
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.86 E-value=0.004 Score=56.08 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=37.9
Q ss_pred ccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
.+++++.+.++.... .+..++|+|+.||||||+.+.|+..+- ...+++.+
T Consensus 9 ~~~~~~~~~l~~~v~-----~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~i 58 (186)
T cd01130 9 TFSPLQAAYLWLAVE-----ARKNILISGGTGSGKTTLLNALLAFIP-PDERIITI 58 (186)
T ss_pred CCCHHHHHHHHHHHh-----CCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEE
Confidence 467888888876643 256899999999999999999988753 34445544
No 162
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.85 E-value=0.0012 Score=58.84 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
..+|+++|+.|+||||+++.|++.+ ..-++|+|-
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCc
Confidence 3579999999999999999999986 355788884
No 163
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.85 E-value=0.0018 Score=61.44 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
.+++.|..|+||||.+..|+..+.+.|++|.++|+|+..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 478888889999999999999999999999999999964
No 164
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=96.82 E-value=0.015 Score=55.52 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=34.1
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCCCCc
Q 017023 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEF 80 (379)
Q Consensus 38 ~~vlv~G~k-~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~ 80 (379)
..|-|..+| |+||||++-.|...+++.+ ++|+++|+|+|-+++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL 47 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNL 47 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcH
Confidence 356666555 8999999999977777655 556999999998874
No 165
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.82 E-value=0.0017 Score=55.56 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=32.8
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+++..++.++++.. -.++..|++.|+.|+|||||+|.++..+
T Consensus 5 ~~~t~~l~~~l~~~--l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 5 EKAMDKFGKAFAKP--LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHHh--CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45666677777632 2346799999999999999999999986
No 166
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.82 E-value=0.0025 Score=59.67 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=32.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
+.+-|+|.+||||||++..|+.+|.++|.+|+++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 36889999999999999999999988999999986
No 167
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.81 E-value=0.002 Score=57.91 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+.-+++.|+.|+|||.++..+++.++++|.+|.|++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 5679999999999999999999999999999999875
No 168
>PRK05973 replicative DNA helicase; Provisional
Probab=96.80 E-value=0.0031 Score=59.33 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=43.5
Q ss_pred hHHHHHHHhhcc-------CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 20 EWSDAADSIAYD-------SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 20 ~W~~~~~~i~~~-------~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
+|..+....+.. +.-.++..++|.|+.|+|||||+..++....++|++|+|+.++-.
T Consensus 40 ~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 40 SWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred hHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 576666554321 111246689999999999999999999888888999999988754
No 169
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.0011 Score=54.79 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017023 40 AFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~l 61 (379)
|+|.|..||||||+++.|..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 170
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.78 E-value=0.0021 Score=57.46 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
.|.|.|+.||||||+++.|++++-..|.++..+.-
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 48999999999999999999999887888766543
No 171
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.78 E-value=0.0028 Score=57.83 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCCCCcCCCceE
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFL 86 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~v 86 (379)
..|+|+||.||||||+++.|++++.... .++..++ ||- |+..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~~--E~~~~~~~ 48 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DPI--EFVHESKR 48 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CCc--cccccCcc
Confidence 3689999999999999999999987543 3445444 432 44455543
No 172
>PHA00729 NTP-binding motif containing protein
Probab=96.78 E-value=0.0016 Score=60.60 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
-..|+|.|++|+||||+|..|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999975
No 173
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0011 Score=60.97 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
++-+|.||||.|||||||.|.| |.|-.-...-+++|-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH-HCCcCCCCceEEECC
Confidence 4789999999999999999986 555433334456655
No 174
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.77 E-value=0.0024 Score=59.12 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~ 75 (379)
.+..++|.|+.|+|||+|+..++-..+++ |.+|+|+.++-
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 36799999999999999998877666677 99999998863
No 175
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.76 E-value=0.0032 Score=62.21 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=42.3
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc-CCCceEee
Q 017023 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF-TAPGFLSL 88 (379)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~-~~PG~vSl 88 (379)
.++|.+.+...... ...|+|+|+.|||||||.+.|++++ ....+++.++ |+..-.+ ..|..+++
T Consensus 146 ~~~~~~~L~~~v~~-----~~nili~G~tgSGKTTll~aL~~~i-p~~~ri~tiE-d~~El~l~~~~n~~~~ 210 (332)
T PRK13900 146 EKKIKEFLEHAVIS-----KKNIIISGGTSTGKTTFTNAALREI-PAIERLITVE-DAREIVLSNHPNRVHL 210 (332)
T ss_pred hHHHHHHHHHHHHc-----CCcEEEECCCCCCHHHHHHHHHhhC-CCCCeEEEec-CCCccccccCCCEEEE
Confidence 34566666654332 3569999999999999999999886 4456777776 4322222 12555554
No 176
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.76 E-value=0.0042 Score=60.66 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccc-cCCCCCCCCCCCCceeEEecCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV 115 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~ 115 (379)
+..|+|+||.+|||||++..|+..+ ...++++|--|=-...+ +.+. |.++ .. .-...||++..
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds~Qvy~~l~------i~Takp~~~----E~-~gv~hhlid~~ 67 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADSMQVYRGMD------IGTAKPTAE----ER-AGVPHHLIDIL 67 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccccceeeccc------ccCCCCCHH----HH-cCccEEeeccc
Confidence 4689999999999999999999875 34567777555321111 1111 1110 00 11235899988
Q ss_pred CCCCC--hHHHHHHHHHHHHHHH
Q 017023 116 SSKRD--PTAYLKYITTLYDYYR 136 (379)
Q Consensus 116 sp~~~--~~~y~~~i~~L~~~~~ 136 (379)
+|... ...|.+...+.++...
T Consensus 68 ~~~~~~s~~~f~~~a~~~i~~i~ 90 (307)
T PRK00091 68 DPTESYSVADFQRDALAAIADIL 90 (307)
T ss_pred ChhhcccHHHHHHHHHHHHHHHH
Confidence 87663 5566666655555443
No 177
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.75 E-value=0.0025 Score=61.81 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=36.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+.+-+.|--|+||||++-.|+-.|.++|++|.++|+|++.+.
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 345555644999999999999999999999999999999876
No 178
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0024 Score=63.96 Aligned_cols=41 Identities=29% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cC-CcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RY-KKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~-~~-~~v~~lDlD~G 76 (379)
.+..++++||.|+||||++..|+.++.. .| .+|+++.+|.-
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3679999999999999999999999764 35 58999999965
No 179
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.002 Score=56.78 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV 68 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v 68 (379)
..+|.|.|++||||||++.-++++|-++|.+|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 57899999999999999999999999887665
No 180
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.73 E-value=0.0023 Score=64.05 Aligned_cols=50 Identities=30% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEe
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
+..|-|+|.+|||||||+..|+..+-.+ .+|+++.-+...-++..||.-+
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~~~~~d~~~~d~ 54 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGCHRFDIDREGKDS 54 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCCCCCCCcccchH
Confidence 5689999999999999999999998878 9999998765544555555443
No 181
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.73 E-value=0.0026 Score=59.25 Aligned_cols=41 Identities=20% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (379)
++..++|.|+.|+|||||+..++..++.. +.+|+|+.++-.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 46789999999999999999988887776 999999998753
No 182
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.72 E-value=0.0027 Score=58.82 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..++|.|+.|+|||||+..++...++++.++.|+.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 367899999999999999999988888889999999885
No 183
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.72 E-value=0.0017 Score=59.52 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..|.|+|+.|||||||++.|++.+-. ..+.++..|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D 41 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD 41 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence 3568999999999999999999987532 344555444
No 184
>PRK13947 shikimate kinase; Provisional
Probab=96.72 E-value=0.0017 Score=57.24 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.|+++|+.||||||+++.|++.+ ..-|+|.|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-----g~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-----SFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECch
Confidence 58999999999999999999997 345788885
No 185
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.72 E-value=0.0025 Score=57.42 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
+..|.|.|+.||||||+++.|++.+-..|.++.++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467999999999999999999999888788887664
No 186
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.70 E-value=0.0016 Score=58.37 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+|+|+|+.||||||+|+.|+..+ ...++++|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~ 31 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY-----GLPHISTG 31 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECc
Confidence 48999999999999999999874 34556654
No 187
>PTZ00301 uridine kinase; Provisional
Probab=96.69 E-value=0.0026 Score=58.79 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQR 64 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~ 64 (379)
..|.|.|+.||||||||+.|++.+.+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 579999999999999999999998653
No 188
>PLN02840 tRNA dimethylallyltransferase
Probab=96.68 E-value=0.0067 Score=61.50 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (379)
.++.|+|+||.||||||++..|+..+ + .-++.+|-.|=-...+ |.-. +|.+. .. .-...|+++..
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~---~--~~iis~Ds~qvYr~~~--IgTa---Kpt~e----E~-~~V~Hhlidil 84 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRL---N--GEIISADSVQVYRGLD--VGSA---KPSLS----ER-KEVPHHLIDIL 84 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHC---C--CCeEeccccceeccee--EEcC---CCCHH----HH-cCCCeEeEeec
Confidence 45689999999999999999998886 1 2367777655432222 1111 11100 00 01135899988
Q ss_pred CCCCC--hHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCC
Q 017023 116 SSKRD--PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGW 162 (379)
Q Consensus 116 sp~~~--~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gw 162 (379)
+|.+. ...|.+...++++....+ ...|+||=-.|+
T Consensus 85 ~p~e~ySv~~F~~~A~~~I~~i~~r------------gkiPIvVGGTGl 121 (421)
T PLN02840 85 HPSDDYSVGAFFDDARRATQDILNR------------GRVPIVAGGTGL 121 (421)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHhc------------CCCEEEEcCccH
Confidence 88763 445655555555544433 567888876664
No 189
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.67 E-value=0.0049 Score=60.17 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=34.0
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
+|.+.++.... .+..++|+|+.|||||||++.|++.+- ...++..++
T Consensus 132 ~~~~~l~~~v~-----~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ie 178 (308)
T TIGR02788 132 DIKEFLRLAIA-----SRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIE 178 (308)
T ss_pred HHHHHHHHHhh-----CCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEc
Confidence 56666654432 256899999999999999999998753 344565655
No 190
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.67 E-value=0.0031 Score=56.52 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH----------cCCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ----------RYKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~----------~~~~v~~lDlD~G 76 (379)
.+..++|.|+.|+|||||+..++-.++. .+.+|.|+++|-.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3568999999999999999999999885 4567777777644
No 191
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.67 E-value=0.0029 Score=57.19 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
+..|.|.|+.||||||+++.|.+++-..|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5689999999999999999999998766655544
No 192
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.67 E-value=0.0033 Score=58.19 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+..++|.|+.|+|||+||..++...++++.+|.|++++-
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3668999999999999999999998888899999999974
No 193
>PLN02748 tRNA dimethylallyltransferase
Probab=96.66 E-value=0.0076 Score=62.04 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccc-cCCCCCCCCCCCCceeEEecC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGD 114 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~ 114 (379)
.++.|+|+||.|||||||+..|+..+ ..-++++|--|=-=+. -+.+. |... .. .-...|++|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgL------dIgTaKpt~e----E~-~~VpHHLid~ 84 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGL------DVLTNKVPLH----EQ-KGVPHHLLGV 84 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCc------chhcCCCCHH----HH-cCCCCeeEee
Confidence 46789999999999999999998775 3568888854421000 01111 1000 00 0012489999
Q ss_pred CCCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017023 115 VSSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG 161 (379)
Q Consensus 115 ~sp~~--~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~G 161 (379)
.+|.. +...|.....++++.+..+ ...|+||=-.|
T Consensus 85 v~p~e~ysv~~F~~~A~~~I~~I~~r------------gk~PIlVGGTg 121 (468)
T PLN02748 85 ISPSVEFTAKDFRDHAVPLIEEILSR------------NGLPVIVGGTN 121 (468)
T ss_pred cCCCCcCcHHHHHHHHHHHHHHHHhc------------CCCeEEEcChH
Confidence 88876 4556766666666655443 45788875554
No 194
>PRK13948 shikimate kinase; Provisional
Probab=96.66 E-value=0.0021 Score=58.09 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|+++|..||||||++|.|++.+ ...|+|+|
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l-----g~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL-----MLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEECC
Confidence 5689999999999999999999987 34577999
No 195
>PF13479 AAA_24: AAA domain
Probab=96.65 E-value=0.002 Score=59.48 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+.+++|.|+.|+|||||++.+ .+++|||+|-|.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~ 35 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGS 35 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence 568999999999999999988 789999999884
No 196
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.65 E-value=0.0018 Score=57.64 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+|+|+|+.||||||+|+.|+.++ ...+++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEEC
Confidence 38999999999999999999876 3455554
No 197
>PF05729 NACHT: NACHT domain
Probab=96.65 E-value=0.0029 Score=54.59 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYK 66 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~ 66 (379)
.++|.|+.|+||||+++.++..+.+.+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999987653
No 198
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.65 E-value=0.0044 Score=61.46 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCCCCcCCCceEee
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLSL 88 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vSl 88 (379)
...|+|+|+.||||||+.+.|++++.... .++..+ -|| .|+..|+..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp--~E~~~~~~~~~ 171 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDP--IEYVHRNKRSL 171 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCC--hhhhccCccce
Confidence 45799999999999999999999876443 344443 444 34445554443
No 199
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.65 E-value=0.0029 Score=62.06 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..++|.|+.+|||||||..++..+.+.+.+|+|+|..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 467999999999999999999999999999999999885
No 200
>PRK06526 transposase; Provisional
Probab=96.64 E-value=0.0015 Score=62.12 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
+..++++||.|+|||+++..|++.+.+.|++|.|.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 56799999999999999999999999999999883
No 201
>PF13245 AAA_19: Part of AAA domain
Probab=96.62 E-value=0.0044 Score=47.78 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc----CCcEEEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR----YKKVAYL 71 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~----~~~v~~l 71 (379)
.+.++|.|+.||||||.+..++.+++.. +.+|+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~ 48 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVL 48 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3567789999999998777777777754 6667765
No 202
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.62 E-value=0.0037 Score=55.97 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=35.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
|+++|.|--|||||||.+.|+. ....+.+++++-.|.|.-+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~ 41 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVN 41 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccc
Confidence 6789999999999999999999 6778999999999988643
No 203
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.60 E-value=0.0022 Score=57.17 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.+.|+|+|+.||||||+|+.|+.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 204
>PRK08727 hypothetical protein; Validated
Probab=96.59 E-value=0.0026 Score=59.55 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=33.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.-++++|++|+|||+|++.+++.+.+++.++.|+.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 4599999999999999999999999999999998764
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.58 E-value=0.0025 Score=53.22 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-----YKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~-----~~~v~~lDlD~ 75 (379)
...++|.|++|+||||+++.+++.+... ...++++++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 4569999999999999999999998754 45566666543
No 206
>PF12846 AAA_10: AAA-like domain
Probab=96.57 E-value=0.0032 Score=59.91 Aligned_cols=37 Identities=32% Similarity=0.562 Sum_probs=33.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+-++|+|..||||||+++.++..+++.|..+.++|-.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3589999999999999999999999999999998443
No 207
>PRK04296 thymidine kinase; Provisional
Probab=96.57 E-value=0.004 Score=56.46 Aligned_cols=35 Identities=31% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
+..++++|+.|+||||++..++.++...+.+|+++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 35789999999999999999999999999999998
No 208
>PRK14527 adenylate kinase; Provisional
Probab=96.57 E-value=0.0023 Score=57.73 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.+..|+|+|+.||||||+++.|++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999876
No 209
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.55 E-value=0.0059 Score=60.93 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCcccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCCCCCCCcCCCc
Q 017023 12 SPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPG 84 (379)
Q Consensus 12 ~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG 84 (379)
...+.+|+...+.+. .++..|+|+|+.||||||+.+.|++++... ..+.++..=||- |+..++
T Consensus 117 l~~l~~~~~~~~~~~--------~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi--E~~~~~ 181 (358)
T TIGR02524 117 LSKLDLPAAIIDAIA--------PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI--EFVYDE 181 (358)
T ss_pred HHHcCCCHHHHHHHh--------ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc--eEeccc
Confidence 344556765544332 125689999999999999999999998643 222334444443 344443
No 210
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.54 E-value=0.0022 Score=55.18 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
|+|+|+.||||||+++.|+.++ + ..++|.|
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~--~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---G--LPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---C--CCEEEch
Confidence 8999999999999999999987 2 3466777
No 211
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.54 E-value=0.0041 Score=59.01 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
.+..++|.|+.|||||+|+..++...++.|.+|.|+-+|-...+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 46799999999999999999999999999999999999866554
No 212
>PLN02796 D-glycerate 3-kinase
Probab=96.54 E-value=0.003 Score=62.38 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..|.|+|+.||||||+++.|.+.+-..+.++..+-+|
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiD 137 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID 137 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEEC
Confidence 456799999999999999999998875444455554444
No 213
>PRK14532 adenylate kinase; Provisional
Probab=96.53 E-value=0.0026 Score=57.07 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+|+++|+.||||||+++.|+.++ ...++++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeC
Confidence 58999999999999999998765 3455665
No 214
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.53 E-value=0.0029 Score=59.23 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+.+|+|+|+.||||||+|+.|+..+ .+.++++|
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence 5679999999999999999999875 35566655
No 215
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.53 E-value=0.0042 Score=58.19 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=39.1
Q ss_pred HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 25 ~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+|++...+ -..+..++|.|+.|+|||||+..++-..+++|.+++|+.++-
T Consensus 10 LD~~l~GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 10 MDEILHGG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred HHHHhcCC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 34544322 234679999999999999999988877778899999998864
No 216
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.52 E-value=0.0042 Score=52.78 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
||+.|++|+|||++++.++..+ +.++..+.+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~ 35 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSD 35 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTT
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccc
Confidence 7999999999999999999998 667777766544
No 217
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.52 E-value=0.0047 Score=56.58 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
..+.|.++|..|||||||...|+..+- .+.+++++..|++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 468899999999999999999999864 3568999998875
No 218
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.52 E-value=0.0031 Score=60.47 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=57.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS 117 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp 117 (379)
|-|++||-++|||||+|+.|..++-..+.+|.+++-|--. ++. . .| .+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-------------~~~-----------~---~y--~~~-- 50 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-------------IDR-----------N---DY--ADS-- 50 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--------------TT-----------S---SS----G--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-------------cch-----------h---hh--hch--
Confidence 4689999999999999999999999888888888754111 111 0 11 111
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccccHHHHHHHHhhcCCCEEEEEe
Q 017023 118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKIN 187 (379)
Q Consensus 118 ~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G~~ll~~~i~~~~p~~Iv~l~ 187 (379)
.........++ ..+.+.+. ++.-+|+|..=+++|+=+++-. +.+..+..++++.-
T Consensus 51 -~~Ek~~R~~l~---s~v~r~ls----------~~~iVI~Dd~nYiKg~RYelyc-lAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 51 -KKEKEARGSLK---SAVERALS----------KDTIVILDDNNYIKGMRYELYC-LARAYGTTFCVIYC 105 (270)
T ss_dssp -GGHHHHHHHHH---HHHHHHHT----------T-SEEEE-S---SHHHHHHHHH-HHHHTT-EEEEEEE
T ss_pred -hhhHHHHHHHH---HHHHHhhc----------cCeEEEEeCCchHHHHHHHHHH-HHHHcCCCEEEEEE
Confidence 11222222222 22333221 3356899999999999888877 77888888875443
No 219
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.51 E-value=0.003 Score=57.62 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCc
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (379)
.+|.|+|+.||||||++++|.+.+ ...++|+|-=.-++.-||
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~~~~~~~ 43 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAREALAPG 43 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHHHHHhcC
Confidence 479999999999999999999864 356778885544433333
No 220
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.51 E-value=0.0052 Score=62.41 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+.+-|+|.||||||||+.-|+..|-++|.+|++|--|-
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 46889999999999999999999999999999965443
No 221
>PRK08181 transposase; Validated
Probab=96.50 E-value=0.0031 Score=60.49 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+..++++|+.|+|||.|+..+++.+.++|++|.|+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 4569999999999999999999999999999999875
No 222
>PRK06851 hypothetical protein; Provisional
Probab=96.49 E-value=0.025 Score=56.54 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCcccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC--CCCC
Q 017023 13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT--DVGQ 77 (379)
Q Consensus 13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl--D~GQ 77 (379)
.+=..|+.+...++.+..+- ..+++|.|+.|+||||+++.++..+.++|..|.+.-| ||..
T Consensus 194 ~ga~Tp~G~~s~~~~l~~~~----~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPds 256 (367)
T PRK06851 194 LGAITPKGAVDFVPSLTEGV----KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDS 256 (367)
T ss_pred ccccCCCcHHhhHHhHhccc----ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence 34456788888888886432 4689999999999999999999999999998887765 5543
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.49 E-value=0.03 Score=51.05 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH--HHcCC------cEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCce
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL--LQRYK------KVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKR 108 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l--l~~~~------~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~ 108 (379)
.+-|.++|..|+|||||.+.|+|+- .+.+. .+-|.+.|.+ +..++-|+.||..
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-----------~~lVDlPGYGyAk-------- 84 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-----------LRLVDLPGYGYAK-------- 84 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-----------EEEEeCCCccccc--------
Confidence 5689999999999999999999943 44332 3566666654 4566766544331
Q ss_pred eEEecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccccHHHHHHHHhhcCCCEEEEEec
Q 017023 109 CYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINI 188 (379)
Q Consensus 109 ~~f~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G~~ll~~~i~~~~p~~Iv~l~~ 188 (379)
. |....+...+++..|.+.-+ ......++||.---++....+++.- +...+...+|++-.
T Consensus 85 --------v---~k~~~e~w~~~i~~YL~~R~--------~L~~vvlliD~r~~~~~~D~em~~~-l~~~~i~~~vv~tK 144 (200)
T COG0218 85 --------V---PKEVKEKWKKLIEEYLEKRA--------NLKGVVLLIDARHPPKDLDREMIEF-LLELGIPVIVVLTK 144 (200)
T ss_pred --------C---CHHHHHHHHHHHHHHHhhch--------hheEEEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEEEc
Confidence 1 23445666666666654311 1356678999988777766666554 45567777777664
Q ss_pred c
Q 017023 189 S 189 (379)
Q Consensus 189 ~ 189 (379)
.
T Consensus 145 ~ 145 (200)
T COG0218 145 A 145 (200)
T ss_pred c
Confidence 3
No 224
>PRK06761 hypothetical protein; Provisional
Probab=96.48 E-value=0.0033 Score=60.60 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE-EEeCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA-YLDTDVGQ 77 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~-~lDlD~GQ 77 (379)
.+.|+|+|+.||||||+++.|++++...+..+. +.+.|+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~ 44 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDH 44 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCC
Confidence 357999999999999999999999876666665 45666543
No 225
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.48 E-value=0.0027 Score=61.31 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
..|+++|+.||||||+|+.|+.++ ....++|.|-
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~----~~~~~l~~D~ 36 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN----PKAVNVNRDD 36 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC----CCCEEEeccH
Confidence 468899999999999999999885 1456777663
No 226
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.47 E-value=0.0031 Score=55.60 Aligned_cols=32 Identities=41% Similarity=0.669 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+|+|+|..||||||+++.|++.+ | ..|+|.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l---g--~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL---G--YRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEEcc
Confidence 368999999999999999999987 2 3577887
No 227
>PRK14531 adenylate kinase; Provisional
Probab=96.47 E-value=0.0027 Score=56.97 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.+|+|+|+.||||||+|+.|+.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999985
No 228
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.45 E-value=0.0049 Score=58.55 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=42.5
Q ss_pred ccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeCCCC
Q 017023 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (379)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (379)
.+|-.|..+ +.+.. + -..+..++|.|+.|+|||||+..++..+... |.+|+|+.++-.
T Consensus 12 ~~~tg~~~L-d~~~g-G-~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 12 EVWWPFPVL-NKLTK-G-LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred CCCCCccee-eeeeE-E-EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 455555443 33321 1 1246789999999999999999998888776 999999998753
No 229
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.44 E-value=0.0031 Score=56.09 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+..|+++|+.||||||++|.|...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999886
No 230
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.43 E-value=0.0022 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N 59 (379)
+|+|+|..|+|||||.+.|++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999983
No 231
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=96.42 E-value=0.0045 Score=57.31 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEeCCCCCCCcCCCc
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPG 84 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG 84 (379)
+.+.|+|..|||||++++.|+..++ +.+.+++++|. .+|+..-.
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~---~GEY~~~~ 68 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDP---HGEYASLF 68 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcC---CCcchhhh
Confidence 4689999999999999999999999 88888888887 56755444
No 232
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.42 E-value=0.0029 Score=57.42 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017023 40 AFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~l 61 (379)
|.|.|+.||||||+|+.|+..+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999985
No 233
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.40 E-value=0.0044 Score=58.32 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
+-|++|+|++|||||||++.|+..+-+....+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~ 45 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIF 45 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEE
Confidence 458999999999999999999988766554443
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.40 E-value=0.0043 Score=58.61 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
.-+++.|+.|+|||+|+..++|++.+.+.+|+|+++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 368999999999999999999999999999999854
No 235
>PLN03025 replication factor C subunit; Provisional
Probab=96.39 E-value=0.0048 Score=60.43 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~ 65 (379)
.+.+++.||+|+||||+++.+++.+...+
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 45689999999999999999999987543
No 236
>PRK12377 putative replication protein; Provisional
Probab=96.39 E-value=0.0047 Score=58.55 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
..+++.|+.|+|||+|+..++|.+.++|.+|.|+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 569999999999999999999999999999999876
No 237
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.38 E-value=0.0047 Score=62.47 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..|-|+|+.|||||||++.|...+-..+.++..|-+|
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiD 249 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSID 249 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEEC
Confidence 456888999999999999999965543345556655554
No 238
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.37 E-value=0.0051 Score=59.54 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
.+.+++.|+.|+||||+++.+++.+...++...++++
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 3568999999999999999999998755444444444
No 239
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.37 E-value=0.0039 Score=61.84 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=35.4
Q ss_pred cChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
...+|...+..... .+..|+|+|+.|||||||++.|++++-. ..+++.+
T Consensus 147 ~~~~~~~~l~~~v~-----~~~nilI~G~tGSGKTTll~aLl~~i~~-~~rivti 195 (344)
T PRK13851 147 DNGDLEAFLHACVV-----GRLTMLLCGPTGSGKTTMSKTLISAIPP-QERLITI 195 (344)
T ss_pred ccHHHHHHHHHHHH-----cCCeEEEECCCCccHHHHHHHHHcccCC-CCCEEEE
Confidence 45567777766543 2467999999999999999999988643 3444443
No 240
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.37 E-value=0.01 Score=59.53 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC--CcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY--KKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~--~~v~~lDlD 74 (379)
.++.++|.|++|+||||+++.+++.+-+.+ ..++++++.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 356799999999999999999999987654 556677664
No 241
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.36 E-value=0.0045 Score=55.50 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+..+.|+|+.|+||||+++.|+..+ .+.++|.|.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l-----~~~~i~gd~ 36 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF-----SAKFIDGDD 36 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc-----CCEEECCcc
Confidence 5689999999999999999999975 234677763
No 242
>PRK13946 shikimate kinase; Provisional
Probab=96.36 E-value=0.0034 Score=56.49 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
...|+++|..||||||+++.|++.+ | .-|+|.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L---g--~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML---G--LPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---C--CCeECcC
Confidence 3579999999999999999999998 3 3488998
No 243
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.35 E-value=0.0051 Score=62.15 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
=|||.|++|+||||||..|++++.++|+-|-=+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 499999999999999999999999998855544
No 244
>PLN02674 adenylate kinase
Probab=96.35 E-value=0.0057 Score=57.76 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=31.9
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
-|..++.++.... ...++|+|+|+.||||+|.|+.|+..+
T Consensus 16 ~~~~~~~~~~~~~--~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 16 LMTELLRRMKCSS--KPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred HHHHHHHHHhhcc--ccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5777777775433 235799999999999999999998875
No 245
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.35 E-value=0.003 Score=56.13 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
..++|+|+.||||||+++.|++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 246
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.34 E-value=0.0042 Score=57.17 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+|+|+|+.||||||+|+.|+.++ ...++++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEEC
Confidence 69999999999999999998775 3555554
No 247
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0071 Score=52.74 Aligned_cols=40 Identities=35% Similarity=0.417 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+++-+|-|.|-.+|||||++-.|-.+|+++|.-.+.+|.|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGD 68 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGD 68 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCc
Confidence 3577999999999999999999999999999999999998
No 248
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.33 E-value=0.0059 Score=53.63 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=35.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFT 81 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~ 81 (379)
|.+++.|..|||||||.+.|+... .+.+++++-.|-|..++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d 42 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGID 42 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchh
Confidence 468999999999999999988763 478899988888766644
No 249
>PRK04328 hypothetical protein; Provisional
Probab=96.33 E-value=0.0064 Score=57.51 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+..++|.|+.|+||||||..++-..+++|.+++|+.++-
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 4678999999999999999998887888899999998864
No 250
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.33 E-value=0.0029 Score=56.44 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+.|+++|..|+||||+-|.|+..| ..-|+|.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L-----~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL-----NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc-----CCCcccch
Confidence 568999999999999999999997 45688988
No 251
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.0048 Score=57.23 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=36.6
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEeCCC
Q 017023 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTDV 75 (379)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~------~~~v~~lDlD~ 75 (379)
.+|.+..+. -..+..+.|+|+.|+||||||..++-..+.. +.+|+|+|.+-
T Consensus 7 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 7 ALDELLGGG-IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhHhhccCC-CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 344544322 2246799999999999999999997544433 37899999874
No 252
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.32 E-value=0.011 Score=58.68 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=37.9
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC------CcEEEEeCC
Q 017023 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY------KKVAYLDTD 74 (379)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~------~~v~~lDlD 74 (379)
-++.+++.+.+........++.++|.|+.|+|||++++.+++.+-+.. ..++++||.
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 345666666554211112356799999999999999999999876432 245666654
No 253
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.30 E-value=0.0036 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
..++|+|+.||||||+++.|++.+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998885
No 254
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.30 E-value=0.0051 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLV 58 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~ 58 (379)
+..+.+.|+.||||||+++.|.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 5689999999999999999986
No 255
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.29 E-value=0.0032 Score=54.54 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N 59 (379)
.|||++|+.+||||||++.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4899999999999999998865
No 256
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.29 E-value=0.0038 Score=53.13 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.|.|+|+.||||||+++.|+..+ ..-++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----CCceeccc
Confidence 37899999999999999999886 34577777
No 257
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.29 E-value=0.0057 Score=55.95 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
..|.|+|+.||||||+++.+++.+-. ..++.++..|.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~ 40 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYT 40 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCC
Confidence 47899999999999999999987644 4568899988764
No 258
>PRK13764 ATPase; Provisional
Probab=96.28 E-value=0.0075 Score=63.90 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
...|+|+|+.|||||||++.|++++...++.|..++ ||.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE-Dp~ 295 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME-SPR 295 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC-CCc
Confidence 346999999999999999999999988777776776 543
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.0047 Score=60.90 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=34.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
..+++.|+.|+|||+|+..++|.++++|..|.|+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 569999999999999999999999999999999876
No 260
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.27 E-value=0.0064 Score=56.01 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC------CcEEEEeCC
Q 017023 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY------KKVAYLDTD 74 (379)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~------~~v~~lDlD 74 (379)
.+|.+..++ -..+..+.|.|+.|+||||||..++-..+..+ .+|+|+|.+
T Consensus 7 ~lD~~l~GG-~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 7 ALDELLGGG-IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred HHHHHhCCC-CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 345554322 22467999999999999999999988877766 889999986
No 261
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.26 E-value=0.0042 Score=56.43 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
.+|.|+|+.||||||++++|.+ + ...++|+|-=
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHH
Confidence 4799999999999999999988 2 3568888854
No 262
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.26 E-value=0.0069 Score=59.56 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..+.|.|+.+|||||||..++-.+.+.+.+++|+|..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 367899999999999999999998888899999999974
No 263
>PRK08116 hypothetical protein; Validated
Probab=96.26 E-value=0.005 Score=58.96 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=33.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
.-+++.|+.|+|||.|+..++|++.+++.+|+|++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 359999999999999999999999998999999874
No 264
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.26 E-value=0.0031 Score=57.87 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+|+|+|+.||||||+|+.|+.++
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998764
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.25 E-value=0.0089 Score=55.49 Aligned_cols=51 Identities=27% Similarity=0.381 Sum_probs=37.0
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCC
Q 017023 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (379)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (379)
.+++.++.+.. .....++|.|++|+|||.|.+.++|++.+. +.+|.|++++
T Consensus 21 ~~~~~ia~~~~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 21 AAAKAIAENPG-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp HHHHHHHHSTT-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred HHHHHHHhcCC-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 34455654322 123458999999999999999999999874 5678888764
No 266
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.25 E-value=0.003 Score=57.56 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=49.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLT 95 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~ 95 (379)
.+|+|+|+.|+|||||+..|........+.+...+.++++......+-+.+..++..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g 63 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC
Confidence 5899999999999999999999998888888888888888887776677777777643
No 267
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.23 E-value=0.0041 Score=55.65 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
.|.|+|+.||||||+++.|.+ + | ..++|+|-=
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g--~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---G--IPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---C--CCEEecCHH
Confidence 378999999999999999998 1 3 456788743
No 268
>PRK09354 recA recombinase A; Provisional
Probab=96.22 E-value=0.0072 Score=59.95 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..+.|.|+.+|||||||..++-...+.+.+++|+|..
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 367899999999999999999998888999999999985
No 269
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.22 E-value=0.01 Score=58.30 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEe
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLD 72 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~--~~~~v~~lD 72 (379)
+..|+|+|+.|||||||.+.|++++.. .+.+++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 346999999999999999999998853 234555554
No 270
>PLN02348 phosphoribulokinase
Probab=96.21 E-value=0.0099 Score=59.70 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~ 63 (379)
.+..|.|.|+.|||||||++.|++.+-.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568889999999999999999999843
No 271
>PRK06921 hypothetical protein; Provisional
Probab=96.19 E-value=0.0073 Score=57.78 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDl 73 (379)
...+++.|+.|+|||+|+..++|.+.++ +..|+|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4679999999999999999999999988 899999875
No 272
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.19 E-value=0.0067 Score=54.03 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~ 67 (379)
+|+|.|++|+||||+++-+++.+-.++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 58999999999999999999998765443
No 273
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.17 E-value=0.013 Score=58.86 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=35.6
Q ss_pred CcccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEe
Q 017023 14 AIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLD 72 (379)
Q Consensus 14 ~~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lD 72 (379)
.+.+|+++.+.+ .. ....|+|+|+.||||||+.+.|++++.+. ..++..++
T Consensus 134 ~lgl~~~~~~~l---~~-----~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 134 QMGIEPDLFNSL---LP-----AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred HcCCCHHHHHHH---Hh-----cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 345666654433 21 13479999999999999999999998753 34555553
No 274
>PRK07933 thymidylate kinase; Validated
Probab=96.16 E-value=0.0074 Score=55.78 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
-|.|.|.-||||||+++.|+++|-..|.+|.+..-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~ 36 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF 36 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 48899999999999999999999999988887654
No 275
>PRK06851 hypothetical protein; Provisional
Probab=96.14 E-value=0.025 Score=56.55 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE--eCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL--DTDVG 76 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l--DlD~G 76 (379)
...+++.|+.|+||||+++.+++.+.++|+.|-++ .+|+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~ 71 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDND 71 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 45789999999999999999999999999987766 55554
No 276
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.11 E-value=0.018 Score=52.51 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=36.3
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
++=.++++.+..+. ...++|.|+.|+||||+.+.+.+.+...+.+|+++
T Consensus 4 ~~Q~~a~~~~l~~~----~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 4 EEQREAVRAILTSG----DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp HHHHHHHHHHHHCT----CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHHhcC----CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 34456667665422 35788899999999999999999998888888775
No 277
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.10 E-value=0.005 Score=55.89 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..|.|+|+.||||||+++.|+..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999974
No 278
>PRK04182 cytidylate kinase; Provisional
Probab=96.09 E-value=0.0044 Score=54.70 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+|.|+|..||||||+++.|++.+ + .-++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g--~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---G--LKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CcEecH
Confidence 68999999999999999999986 2 345664
No 279
>PRK02496 adk adenylate kinase; Provisional
Probab=96.09 E-value=0.0055 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.+++|.|++||||||+|+.|+.++
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 280
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.08 E-value=0.0047 Score=52.13 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
++.++.|+|+.|||||||.+.|+...-
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 367899999999999999998887754
No 281
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.08 E-value=0.0055 Score=54.59 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++-+++|.||.|+|||||.|.++|-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 57799999999999999999998753
No 282
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.06 E-value=0.013 Score=58.85 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=43.1
Q ss_pred cChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEeCCC
Q 017023 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDV 75 (379)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~ 75 (379)
.++.|......+..+....++..|+++||.|+||||-..-|+-+.. .+.++|+++-+|.
T Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 183 FSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred HHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 4456777776665442112367999999999999987776766666 6678899998884
No 283
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.0046 Score=57.00 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
++..+.|+||.|+|||||.+.|.-++.-.+.+|.|-..|..+
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 577999999999999999999999998677778886665543
No 284
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.05 E-value=0.0069 Score=54.90 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=40.0
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
..+++.+.-+- .++.-++++||+|+|||||.|.+.-...-...++.+-+.|.+
T Consensus 15 ~~aL~~vs~~i--~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~ 67 (223)
T COG2884 15 REALRDVSFHI--PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67 (223)
T ss_pred chhhhCceEee--cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence 44555553211 246789999999999999999999887766677888777765
No 285
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.03 E-value=0.0098 Score=58.07 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~ 65 (379)
+.+++.||+|+||||+++.+++.+...+
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4699999999999999999999987543
No 286
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.03 E-value=0.011 Score=57.83 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
.+++.|--|+||||++-.++=++.+.|+++.++.+||..+
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 5677777799999999999999999999999999999865
No 287
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.01 E-value=0.01 Score=56.45 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=40.6
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEeCCCCC
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQ 77 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ 77 (379)
+.+++.+.+.... ....+|.|+|..|+||||+++.+++..- +.+..++|+++....
T Consensus 4 ~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 4 EIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred HHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc
Confidence 4456666665422 3467999999999999999999998843 345578898886443
No 288
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.00 E-value=0.0059 Score=55.55 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+..+++.|+.||||||+++.+...+- +....++|.|-
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 366788889999999999999988764 56678888883
No 289
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.98 E-value=0.011 Score=56.29 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+..|++.|++|+||||+++.|++.+ |..+..++++.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~ 56 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDA 56 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCc
Confidence 4568999999999999999999854 77888888875
No 290
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.97 E-value=0.0043 Score=56.76 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||++.|+..+--....+.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 46789999999999999999999764322334443
No 291
>PLN02200 adenylate kinase family protein
Probab=95.97 E-value=0.0066 Score=56.96 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+.+|+|+|+.||||||+|+.|+.++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 292
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=95.96 E-value=0.0064 Score=53.51 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYK 66 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~ 66 (379)
+|+|+|..|+|||||...|++.....+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~ 28 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIER 28 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCc
Confidence 3899999999999999999988665444
No 293
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.96 E-value=0.0069 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
||.|+|+.++||||+++.|..+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999977
No 294
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.0056 Score=55.01 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
++.++.|+|+.|+|||||.|.|+..+--...++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 57 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE 57 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE
Confidence 4679999999999999999999876533333343
No 295
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.94 E-value=0.0078 Score=55.35 Aligned_cols=39 Identities=26% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
+..|-++|+-||||||++++|...+ | ..++|+|-=-.++
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g--~~vidaD~i~~~l 44 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---N--LNVVCADTISREI 44 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---C--CeEEeccHHHHHH
Confidence 4579999999999999999998754 3 3478998665554
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.94 E-value=0.012 Score=60.54 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..++|.|+.|+|||||+..++..+.+++.+|+|++..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 366899999999999999999999988889999999975
No 297
>PLN02199 shikimate kinase
Probab=95.94 E-value=0.0074 Score=58.41 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|+++|..||||||+++.|++.+ ...|+|+|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~L-----g~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVL-----GYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEehH
Confidence 5689999999999999999999987 45689998
No 298
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.93 E-value=0.0053 Score=58.33 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
++..+.|+||.|||||||.|.|+..+--+...|.+=+-|+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 46789999999999999999999987645555555444443
No 299
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.93 E-value=0.0085 Score=53.46 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
.+++|.|+.+|||||||..|+..+ +.++.|+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~ia 33 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIA 33 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCc
Confidence 469999999999999999997653 34455533
No 300
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.90 E-value=0.0057 Score=55.00 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
..++|+|+.||||||+.|.|+..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997653
No 301
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.89 E-value=0.0068 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
..+|+|+|+.|+|||||.+.|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 578999999999999999988764
No 302
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.89 E-value=0.015 Score=56.89 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.8
Q ss_pred HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 25 ~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
++.+.......+..|+++.|.+|||||++...++.++..+++-|+++
T Consensus 11 ~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~v 57 (309)
T PF10236_consen 11 INKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYV 57 (309)
T ss_pred HHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEc
Confidence 44443322334578999999999999999999999999998877765
No 303
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.88 E-value=0.013 Score=60.45 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
++..++|.|+.|+|||||+..++..+.+.+.+|+|++.+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 467999999999999999999999888888899999875
No 304
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.0088 Score=55.35 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
-.|-|.|+.+|||||+|+.|.+.+-. .++.++-.|
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D 43 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLD 43 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeecc
Confidence 57889999999999999999999732 266666666
No 305
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.88 E-value=0.0088 Score=62.29 Aligned_cols=34 Identities=38% Similarity=0.574 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+.+|.|.|+.||||||+++.|++++ ...++|.|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g 316 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTG 316 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCC
Confidence 46899999999999999999999998 25666654
No 306
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.87 E-value=0.011 Score=56.17 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=34.4
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCc
Q 017023 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (379)
Q Consensus 39 ~vlv~G~k-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (379)
.|.|.|+| |+||||++-.|+-.+ ...+++.++|+|+-.|++
T Consensus 3 ~vAV~sGKGGtGKTTva~~la~~l-~~~~~~~l~DcDVe~PNl 44 (284)
T COG1149 3 QVAVASGKGGTGKTTVAANLAVLL-GDKYKLVLADCDVEAPNL 44 (284)
T ss_pred EEEEeecCCCCChhhHHHHHHHHh-ccccceEEEecCCCCCCc
Confidence 57888888 899999999998775 445779999999998874
No 307
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.87 E-value=0.012 Score=52.57 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
++|.|+.+|||||||..++-. .+.+++|+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 799999999999999988754 567888883
No 308
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.87 E-value=0.014 Score=58.40 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~ 67 (379)
.+.|++|+|+.|+||||+++.++|.+...+..
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~d 163 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPE 163 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999998876433
No 309
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.86 E-value=0.0064 Score=55.80 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|+|||||.|.|+..+--...++.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 46799999999999999999998765323334443
No 310
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.85 E-value=0.0053 Score=56.17 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||++.|+..+--...+|.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 46789999999999999999999875433445554
No 311
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.85 E-value=0.01 Score=63.59 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+..|+++|..||||||+++.|++++-..+..+.++|-|-
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~ 498 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN 498 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence 4779999999999999999999999987788899999985
No 312
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.84 E-value=0.078 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017023 40 AFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~l 61 (379)
|.|-|.-||||||+++.|+.++
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999997
No 313
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0058 Score=55.93 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 46789999999999999999999765333344544
No 314
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.83 E-value=0.0077 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+|+++|+.+||||||...|.|.-
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999887543
No 315
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.82 E-value=0.0076 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.|+|||||++.|++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998753
No 316
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.81 E-value=0.017 Score=58.50 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (379)
..+++.|+.|+|||+|++.++|.+.+. +.+|.|++++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 458999999999999999999999876 5778888754
No 317
>PRK14528 adenylate kinase; Provisional
Probab=95.81 E-value=0.0089 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++|+|.|++||||||+|+.|+..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998775
No 318
>PRK13695 putative NTPase; Provisional
Probab=95.80 E-value=0.014 Score=51.79 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKV 68 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v 68 (379)
+|+++|+.|+|||||++.+++.+...|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 689999999999999999999987655554
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.79 E-value=0.0077 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
++.++.|+|+.|+|||||++.|+..+-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 477999999999999999999987653
No 320
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.79 E-value=0.0057 Score=56.28 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+..+--....+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47799999999999999999998765333334544
No 321
>PLN02924 thymidylate kinase
Probab=95.78 E-value=0.017 Score=53.73 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
.+.-|.|.|.-||||||.++.|.+++-..|.+|.++
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 466899999999999999999999999888877654
No 322
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.78 E-value=0.007 Score=58.17 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
|-|+|+.|||||||++.|++.+-.. .+.++.+|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~--~~~vi~~D 34 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSD--LVTVICLD 34 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCC--ceEEEECc
Confidence 6799999999999999999776322 34445554
No 323
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.77 E-value=0.01 Score=60.96 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.-+++.|+.|+|||+|++.++|.+.+.+.+|.|++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3589999999999999999999999889999998864
No 324
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.77 E-value=0.015 Score=54.09 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+..++|+|+.|+||||+++.|. .++.+++.|-+-..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~ 47 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKV 47 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchh
Confidence 5689999999999999999883 46899999976443
No 325
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.77 E-value=0.0075 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.|||||||++.|.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998875
No 326
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.76 E-value=0.14 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH-HHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLV-NVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~-N~l 61 (379)
+.+++|+|+.|+|||||.|.++ +.+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHH
Confidence 4689999999999999999999 443
No 327
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.76 E-value=0.0091 Score=48.86 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRY 65 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~ 65 (379)
|.|.|+.|+|||++++.|+..+++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999753
No 328
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.75 E-value=0.016 Score=58.13 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
++..++|.|+.|+|||||+..++..+.+.+.+|+|++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367899999999999999999999998888899999875
No 329
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.74 E-value=0.0071 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999864
No 330
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.74 E-value=0.0095 Score=53.60 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
+|.|+|+.||||||+++.|.+.. ...++|+|-=
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHH
Confidence 37899999999999999998874 2467888844
No 331
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.74 E-value=0.01 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||++.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47799999999999999999999876
No 332
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.73 E-value=0.02 Score=60.92 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
.+.+-|+|.+|||||||+..|+.+|-++|++|+++.-
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 4688999999999999999999999999999999876
No 333
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.73 E-value=0.013 Score=55.58 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~ 63 (379)
...+++.||+|+||||++|.+++.+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999999854
No 334
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.73 E-value=0.0079 Score=54.42 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
++.++.|+|+.|+|||||.|.|+..+--...++.+-+.|+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence 4679999999999999999999886533334455433333
No 335
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0073 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 336
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.71 E-value=0.009 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+|+|+|++|+|||||.+.|.+.-
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999887754
No 337
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.71 E-value=0.015 Score=60.38 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDlD 74 (379)
.+..++|.|+.|+||||||..++-..+++ |.++.|+.++
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 46799999999999999999876655554 8999998876
No 338
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.71 E-value=0.0076 Score=55.16 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 339
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.71 E-value=0.0069 Score=56.07 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH---HcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL---QRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll---~~~~~v~~lDlD 74 (379)
++..+.|+|+.|||||||++.|+..+- -...++.+-+-|
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~ 73 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEE
Confidence 467899999999999999999998764 233445543333
No 340
>PRK13973 thymidylate kinase; Provisional
Probab=95.70 E-value=0.018 Score=53.11 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
+.-|.|.|.-||||||.++.|..+|-+.|.++.+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45688999999999999999999998888877664
No 341
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.70 E-value=0.0094 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N 59 (379)
.+|+|+|..|+|||||.+.|++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999888775
No 342
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0073 Score=56.22 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||++.|+..+--....+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47799999999999999999998765323334443
No 343
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.68 E-value=0.0078 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998764
No 344
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.67 E-value=0.0085 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998764
No 345
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.67 E-value=0.017 Score=59.99 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
++..++|.|+.|+|||||+..++..++++|.+++|+-.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 467999999999999999999999999999999997665
No 346
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.66 E-value=0.018 Score=56.30 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+.-+++.|+.|+|||.|+..++|.+.++|.+|.|+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 4569999999999999999999999999999998765
No 347
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.65 E-value=0.014 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
+..++|+|+.|||||||++.|+++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 46899999999999999999998864
No 348
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.65 E-value=0.0083 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999998764
No 349
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.0083 Score=55.25 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998754
No 350
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.65 E-value=0.0083 Score=54.51 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999999764
No 351
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.64 E-value=0.012 Score=52.24 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 46799999999999999999998764
No 352
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.02 Score=58.27 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCC---CCCC--CCCCCCcee
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP---DLTI--PCLKTPKRC 109 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~---~~~~--~~~~~p~~~ 109 (379)
..|-+|.+||-.|+||||=..-++=||++.+.+|++.-||+=.+. .+++... .+.. +++ -+ -
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsG----------AvEQLrtHv~rl~~l~~~~-v~--l 442 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSG----------AVEQLRTHVERLSALHGTM-VE--L 442 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhh----------HHHHHHHHHHHHHHhccch-hH--H
Confidence 346799999999999999999999999999999999999964432 3333210 0100 000 00 0
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCccccc--HHHHHHHHhhcCCCEEEEEe
Q 017023 110 YFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG--YDILVDMLKYITPTHVVKIN 187 (379)
Q Consensus 110 ~f~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G--~~ll~~~i~~~~p~~Iv~l~ 187 (379)
|=-|+- .++.. ..++.++.. ++ ..-..++|||-|-...-- ..-|..+++.-+||+|++++
T Consensus 443 fekGYg---kd~a~---vak~AI~~a-~~-----------~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg 504 (587)
T KOG0781|consen 443 FEKGYG---KDAAG---VAKEAIQEA-RN-----------QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG 504 (587)
T ss_pred HhhhcC---CChHH---HHHHHHHHH-Hh-----------cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh
Confidence 111211 11111 111111221 11 133468999999887632 34677889999999999988
Q ss_pred c
Q 017023 188 I 188 (379)
Q Consensus 188 ~ 188 (379)
.
T Consensus 505 e 505 (587)
T KOG0781|consen 505 E 505 (587)
T ss_pred h
Confidence 4
No 353
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.64 E-value=0.01 Score=54.64 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
++..+.|+|+.|+|||||++.|+...-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 467999999999999999999987643
No 354
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.64 E-value=0.0078 Score=53.77 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||+|.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 355
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.64 E-value=0.11 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N 59 (379)
.+++|.|+.++|||||.|.+.-
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999984
No 356
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.63 E-value=0.02 Score=54.63 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=28.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~ 67 (379)
..+-+|-|+|+.++||||+||.|.+-+-+.+.+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 346799999999999999999999998876665
No 357
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.63 E-value=0.0092 Score=55.70 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+..+--....+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 46799999999999999999998764323334444
No 358
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.62 E-value=0.0092 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999999765
No 359
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.62 E-value=0.0077 Score=53.91 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|+|||||.+.|+...--...++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 46789999999999999999999775433334443
No 360
>PRK04040 adenylate kinase; Provisional
Probab=95.62 E-value=0.011 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+.+|+|.|..||||||+++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999987
No 361
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.0078 Score=55.90 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||++.|+..+--...++.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV 64 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47799999999999999999998765333344444
No 362
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.62 E-value=0.0098 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.|+|||||.+.|++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999888644
No 363
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.62 E-value=0.0095 Score=51.21 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.|||||||.+.|++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988755
No 364
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.62 E-value=0.011 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+..|+|+|..||||||+++.|+..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999985
No 365
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.61 E-value=0.02 Score=52.06 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=49.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCCCCCCCcCCCceEeeeeccccCCCCCCCCCCCCceeEEecCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (379)
+-++|+|..|||||++.+.++-.++.+ ...+-+.=+|+...+|. .+.. .+|. +..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~--------~~~~------~~~~---------~~~ 95 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLA--------PLAD------LPHV---------AAV 95 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCG--------GGTT-------TTB---------SS-
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccc--------hhhh------hhhh---------ccc
Confidence 469999999999999999999999973 23444444555544422 1111 1121 112
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhh
Q 017023 116 SSKRDPTAYLKYITTLYDYYRKEYYM 141 (379)
Q Consensus 116 sp~~~~~~y~~~i~~L~~~~~~~~~~ 141 (379)
....+++...+.+..|.+..++|...
T Consensus 96 ~~~~~~~~~~~~l~~l~~em~~R~~~ 121 (205)
T PF01580_consen 96 AVATDPEEILRLLEELVEEMERRQAL 121 (205)
T ss_dssp S-B-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23457788888888888888887643
No 366
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.61 E-value=0.012 Score=54.08 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+..|.|+|+.||||||++++|... ...++|+|
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~~------g~~v~d~D 36 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAEM------GCELFEAD 36 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC------CCeEEecc
Confidence 357889999999999999999863 34678888
No 367
>PRK08356 hypothetical protein; Provisional
Probab=95.61 E-value=0.01 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLV 58 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~ 58 (379)
...|+|+|+.||||||+|++|.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999995
No 368
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.60 E-value=0.0078 Score=55.77 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 47799999999999999999998765333344544
No 369
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.60 E-value=0.0091 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998764
No 370
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.60 E-value=0.0091 Score=54.89 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
++..+.|+|+.|||||||.+.|+...--....+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4678999999999999999999986533333444
No 371
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.60 E-value=0.012 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLV 58 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~ 58 (379)
++.++.|+|+.|||||||.|.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46799999999999999999885
No 372
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=95.59 E-value=0.0084 Score=57.85 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQ 63 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~ 63 (379)
-+|||+|.+|+|||||.+.|+|..+.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47999999999999999999997654
No 373
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.59 E-value=0.019 Score=55.58 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
....|-|+|+.|||||||...|++.+... .++++++-|.+..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~ 144 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV 144 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcH
Confidence 46789999999999999999999998544 5899999887643
No 374
>PRK10646 ADP-binding protein; Provisional
Probab=95.58 E-value=0.018 Score=50.45 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=33.3
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+++..+..+.++. .-.++..|++.|.-|+|||||+|.++..+
T Consensus 11 ~~~t~~l~~~la~--~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 11 EQATLDLGARVAK--ACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred HHHHHHHHHHHHH--hCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567777777763 22346689999999999999999999987
No 375
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.012 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999754
No 376
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.01 Score=54.83 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 46789999999999999999999765
No 377
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.0082 Score=54.85 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
+ ++.|+|+.|||||||.+.|+..+-....++.+
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 6 89999999999999999998754333344544
No 378
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.56 E-value=0.018 Score=56.17 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~------~~~~v~~lDlD 74 (379)
.+..+.|+|+.||||||||..++-.+.. .+.+|+|+|..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te 138 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTE 138 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECC
Confidence 3678899999999999999999766542 12489999986
No 379
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.56 E-value=0.0094 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|++|||||||.+.|.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999998888643
No 380
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.55 E-value=0.0096 Score=55.19 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 46789999999999999999999765323333433
No 381
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.54 E-value=0.021 Score=59.27 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=43.4
Q ss_pred CcccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCce
Q 017023 14 AIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF 85 (379)
Q Consensus 14 ~~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~ 85 (379)
.+.++++=.+.+.++... +...|+|+|+.||||||+.+.+++++...+.+++.++= | .|+..||.
T Consensus 223 ~Lg~~~~~~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED-p--vE~~~~~~ 287 (486)
T TIGR02533 223 TLGMSPELLSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVED-P--VEYQIEGI 287 (486)
T ss_pred HcCCCHHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC-C--eeeecCCC
Confidence 344566544455544321 23579999999999999999999998665566666553 3 35556664
No 382
>CHL00181 cbbX CbbX; Provisional
Probab=95.54 E-value=0.017 Score=55.89 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~ 65 (379)
+..+++.|++|+||||+||.++..+...|
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 55799999999999999999999986543
No 383
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.0075 Score=56.50 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||++.|+..+--...+|.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 46799999999999999999999864323334444
No 384
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.54 E-value=0.033 Score=54.80 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=44.0
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEe
Q 017023 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
+.+..++..+.. +..|++.|++|+||||+++.|+..+ ++...-++++..-...-..|.-+
T Consensus 52 ~~~~~vl~~l~~------~~~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 52 ATTKAICAGFAY------DRRVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred HHHHHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCce
Confidence 355656555542 3469999999999999999999998 57778888877655544555543
No 385
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.012 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.|.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47799999999999999999998865
No 386
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.53 E-value=0.011 Score=52.24 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.2
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 43 CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 43 ~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
+|+.||||||+++.|++.+ ...++|.|.-
T Consensus 1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-----CCeEEeCccC
Confidence 4999999999999999997 2467888743
No 387
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.53 E-value=0.0087 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||++.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 46789999999999999999998754
No 388
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.53 E-value=0.008 Score=55.45 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999764
No 389
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.0082 Score=55.86 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||++.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999999999764
No 390
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.53 E-value=0.016 Score=56.31 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
+..|+|.|+.||||||+++.|++++ +.. .++..|.=+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 5699999999999999999999998 332 466677544
No 391
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.012 Score=54.59 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 46799999999999999999998776433334443
No 392
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.52 E-value=0.0031 Score=57.47 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
...++|.|+.|+|||||++.+++.+-..+..+.|++.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~ 56 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDF 56 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEec
Confidence 4689999999999999999999998554445555554
No 393
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.009 Score=55.00 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+..+-....++.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 46789999999999999999998764333334443
No 394
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.0083 Score=56.02 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 46789999999999999999998865333344544
No 395
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.52 E-value=0.0089 Score=54.70 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||.+.|+..+--....+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 46799999999999999999998764322333443
No 396
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.0097 Score=55.43 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||++.|+..+--....+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 47799999999999999999999765323334443
No 397
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.50 E-value=0.013 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 398
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.50 E-value=0.012 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.+||||||++.|.+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999887764
No 399
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.50 E-value=0.043 Score=57.24 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (379)
.+..++|.|+.|+|||||+..++...+++ |.+|+|+.++-.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 47799999999999999999998887777 899999988754
No 400
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.50 E-value=0.021 Score=56.75 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=41.4
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC---CcEEEEeCCCCCCCcC
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY---KKVAYLDTDVGQPEFT 81 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~---~~v~~lDlD~GQ~~~~ 81 (379)
.|+++...+..........-|++.|++|+||||++|.+.+++-... ..++ ++||.+|++-
T Consensus 21 Gq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf--~~~p~~p~~~ 83 (350)
T CHL00081 21 GQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPF--NSHPSDPELM 83 (350)
T ss_pred ChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCC--CCCCCChhhh
Confidence 5777776665433222234699999999999999999999987532 1222 3788777743
No 401
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.49 E-value=0.012 Score=50.72 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.|||||||.+.|++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988754
No 402
>PRK07429 phosphoribulokinase; Provisional
Probab=95.49 E-value=0.017 Score=56.98 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.+..|-|.|+.|||||||++.|+..+-.. .+.++.+|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~D 43 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTD 43 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEec
Confidence 35689999999999999999999776322 24444444
No 403
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.49 E-value=0.012 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||+|.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46789999999999999999998764
No 404
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.49 E-value=0.02 Score=51.07 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll-~~~~~v~~lDlD 74 (379)
..+|++||.|+|||.+++.|+.++. ........+|+-
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS 41 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence 4799999999999999999999997 555666777764
No 405
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.49 E-value=0.021 Score=50.59 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+..++++|+.|+|||||...|.+..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999988887764
No 406
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.49 E-value=0.013 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||++.|+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47799999999999999999998754
No 407
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.46 E-value=0.014 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
++..|+|+||.||||||+++.|++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999876
No 408
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.46 E-value=0.009 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998654
No 409
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.01 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998765
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.025 Score=57.60 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH-c-CCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-R-YKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~-~-~~~v~~lDlD~ 75 (379)
.+.+|+++|+.|+||||+++.|+.++.. . ..++.++-.|.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 4679999999999999999999997653 2 25666666654
No 411
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.45 E-value=0.0093 Score=55.59 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||++.|+...--....|.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47799999999999999999998764323334544
No 412
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.012 Score=55.27 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=31.4
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~ 63 (379)
.|-.+++.+.-+- ..+-++-|+|+.||||||++|.|+-+.-.
T Consensus 18 ~~~~~l~~VS~~i--~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 18 FAFHALNNVSLEI--ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred chhhhhcceeEEe--cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 4556666664322 24778999999999999999999987643
No 413
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.45 E-value=0.013 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||++.|+...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47799999999999999999998764
No 414
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.014 Score=54.93 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
++-.|.|+||+|||||||.|.++--.--....|.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4678999999999999999999876543333333
No 415
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.44 E-value=0.011 Score=55.09 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+...--...++.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 46789999999999999999998875433344544
No 416
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.44 E-value=0.02 Score=60.35 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
...|.|.|+.|||||||++.|++.+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC
Confidence 5689999999999999999999874
No 417
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.43 E-value=0.18 Score=47.71 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=29.1
Q ss_pred ChhHHHHHHHhhccC-CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017023 18 PREWSDAADSIAYDS-NTSPPPIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 18 p~~W~~~~~~i~~~~-~~~~~~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
.+.+..+.+..+... ......+|+|+|..|+|||||...|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 11 DAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred HHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 445666665443211 1223679999999999999998777654
No 418
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.43 E-value=0.014 Score=53.19 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|+|||||++.|+...-.....+.+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 67 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEI 67 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 47799999999999999999998764322333443
No 419
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.024 Score=53.86 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (379)
+..+++.|+.|+|||.++-.++|.+++.|.+|.|+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 5579999999999999999999999988899998643
No 420
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.43 E-value=0.026 Score=50.26 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=34.5
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
...++++.+..-.. .+..|||.|..|+||+.+||.+-+.-.+....-+.+||-
T Consensus 7 ~m~~~~~~~~~~a~--~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~ 59 (168)
T PF00158_consen 7 AMKRLREQAKRAAS--SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA 59 (168)
T ss_dssp HHHHHHHHHHHHTT--STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh
Confidence 34455554432121 135699999999999999999999766555555555553
No 421
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.41 E-value=0.011 Score=53.78 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|+|||||.+.|+..+--...+|.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 46799999999999999999998765333334443
No 422
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.40 E-value=0.015 Score=57.79 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~ 63 (379)
...++++||.|+|||||++.|++.+-+
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999854
No 423
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.40 E-value=0.021 Score=55.90 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEeCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD 74 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~------~~~v~~lDlD 74 (379)
.+..+.|+|+.|+|||+||..++-.+... +.+|+|+|++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te 145 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTE 145 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCC
Confidence 36789999999999999999998665432 3489999986
No 424
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.012 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998754
No 425
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.01 Score=55.37 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|+|||||.|.|+..+--...++.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47799999999999999999999865333344444
No 426
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.014 Score=54.27 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+..+--...+|.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 46799999999999999999999865323334443
No 427
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.012 Score=55.84 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 46799999999999999999999865333344544
No 428
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.38 E-value=0.012 Score=54.03 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.|.|+..+-....++.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 47799999999999999999999765433444544
No 429
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=95.38 E-value=0.013 Score=52.83 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCce
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF 85 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~ 85 (379)
.|-|+|+-||||||++++|.++ ...++|+|-=-.++.-||.
T Consensus 2 iIglTG~igsGKStv~~~l~~~------G~~vidaD~i~~~l~~~~~ 42 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAEL------GFPVIDADEIAHELYEPGS 42 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT------T-EEEEHHHHHHHCTSCTC
T ss_pred EEEEECCCcCCHHHHHHHHHHC------CCCEECccHHHHHHhhcCH
Confidence 5789999999999999999873 4688999855444444443
No 430
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.38 E-value=0.012 Score=55.72 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||++.|+..+--...++.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 47899999999999999999999865333344444
No 431
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.38 E-value=0.015 Score=53.61 Aligned_cols=34 Identities=24% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
++..+.++|+.|||||||.+.|+...--....+.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 4678999999999999999999987543333444
No 432
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.38 E-value=0.014 Score=50.18 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N 59 (379)
+|+|+|..|+|||||++.|++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988875
No 433
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.37 E-value=0.013 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017023 40 AFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~l 61 (379)
|.|+||.||||||+++.|+..+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6889999999999999998764
No 434
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.37 E-value=0.014 Score=54.42 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+..+-....++.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 62 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL 62 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 47799999999999999999999875433334444
No 435
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=95.36 E-value=0.015 Score=53.04 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCce
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF 85 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~ 85 (379)
|.|+|+.||||||++++|.+. ...++|+|.--.++.-||.
T Consensus 2 i~itG~~gsGKst~~~~l~~~------g~~~i~~D~i~~~~~~~~~ 41 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL------GAFGISADRLAKRYTEPDS 41 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC------CCEEEecchHHHHHHhcCc
Confidence 679999999999999988643 3567899866555544443
No 436
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.36 E-value=0.012 Score=53.59 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|+|||||.+.|+..+-....++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46799999999999999999998764333334443
No 437
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.36 E-value=0.015 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 46789999999999999999997654
No 438
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=0.028 Score=53.60 Aligned_cols=41 Identities=34% Similarity=0.476 Sum_probs=35.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Q 017023 39 IAFIC-GAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (379)
Q Consensus 39 ~vlv~-G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (379)
+|+|. |--|+||||++..|+-.|.+.+.+|.++|+|..-|.
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPS 90 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPS 90 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCC
Confidence 55555 445899999999999999999999999999998876
No 439
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=95.35 E-value=0.02 Score=52.33 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.|.|+|+.||||||++++|.++ | ..++|+|-
T Consensus 3 ~igitG~igsGKst~~~~l~~~----g--~~vid~D~ 33 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSE----G--FLIVDADQ 33 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHC----C--CeEEeCcH
Confidence 6899999999999999999862 3 46788884
No 440
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.35 E-value=0.014 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
...+..++||.|||||||.|.| |++.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~l-NRmn 57 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCL-NRMN 57 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHH-Hhhc
Confidence 3568999999999999999987 4543
No 441
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.35 E-value=0.012 Score=55.15 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999998764
No 442
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.34 E-value=0.018 Score=58.44 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEe
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
+..++++||.|+||||++|.|+..+ ..-|+.+| ..+|+-+|.+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l-----~~~fi~vD--~t~f~e~GyvG 93 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVE--ATKFTEVGYVG 93 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CChheeec--chhhccCCccc
Confidence 5689999999999999999999986 34555555 44555565544
No 443
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.34 E-value=0.014 Score=54.25 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 47799999999999999999999876433344544
No 444
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=95.33 E-value=0.017 Score=54.52 Aligned_cols=43 Identities=30% Similarity=0.473 Sum_probs=33.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceE
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFL 86 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~v 86 (379)
+|-|+|+-||||||++++|.+.+ ...++|+|-=--++--||.-
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~~ 45 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNMA 45 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCChH
Confidence 68899999999999999999863 35679999765555556643
No 445
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.33 E-value=0.052 Score=52.55 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=52.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeecc-ccCCCCCCCCCCCCceeEEecCCCCC
Q 017023 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD-TLTPDLTIPCLKTPKRCYFFGDVSSK 118 (379)
Q Consensus 40 vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~-~~~~~~~~~~~~~p~~~~f~G~~sp~ 118 (379)
|+|+||.+||||+++..|+..+ ...++.+|--|=--.. .+-+ +|.++ .. .-...||++..+|.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~-----~~~iis~Ds~qvY~~l------~IgTakp~~~----e~-~~v~hhlid~~~~~ 65 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL-----NAEIISVDSMQIYKGM------DIGTAKPSLQ----ER-EGIPHHLIDILDPS 65 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC-----CCcEEEechhheeeec------cccCCCCCHH----HH-cCccEEEEEEechh
Confidence 7899999999999999998765 2234555543311000 0000 01110 00 01135899988887
Q ss_pred CCh--HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017023 119 RDP--TAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG 161 (379)
Q Consensus 119 ~~~--~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~G 161 (379)
+.- ..|.....+.++.+.++ ...|+|+=-.|
T Consensus 66 ~~~~v~~f~~~a~~~i~~~~~~------------g~~pi~vGGTg 98 (287)
T TIGR00174 66 ESYSAADFQTLALNAIADITAR------------GKIPLLVGGTG 98 (287)
T ss_pred heEcHHHHHHHHHHHHHHHHhC------------CCCEEEEcCcH
Confidence 743 56666555555544332 45677765544
No 446
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.015 Score=52.57 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
++..+.|+|+.|+|||||.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999864
No 447
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.31 E-value=0.013 Score=54.15 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999998764
No 448
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.31 E-value=0.016 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
++.++.|+|+.|||||||.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999876
No 449
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.31 E-value=0.013 Score=55.80 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
++.++.|+|+.|||||||.+.|+..+--...++.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 4779999999999999999999986533333443
No 450
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.30 E-value=0.012 Score=59.57 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=34.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEe
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (379)
--|+|.||+||||+.|. ..+.|+....+.++|||+=|.-=+=.++|.
T Consensus 18 TFIvV~GPrGSGK~elV---~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~ 64 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELV---MDHVLKDRKNVLVIDCDQIVKARGDAAFIK 64 (431)
T ss_pred eEEEEECCCCCCccHHH---HHHHHhCCCCEEEEEChHhhhccChHHHHH
Confidence 47999999999999987 234455556799999998776444444443
No 451
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.30 E-value=0.012 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||++.|+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999999865
No 452
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.015 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.|.|+|+|-+|+||||||..|+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 5889999999999999999999554
No 453
>PRK10908 cell division protein FtsE; Provisional
Probab=95.30 E-value=0.016 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|||||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998654
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.30 E-value=0.014 Score=54.43 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+-.|.|+||.|||||||...+..-.--....+.+-..|.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~ 69 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDL 69 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEc
Confidence 4678999999999999999888765544444555544343
No 455
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=95.29 E-value=0.022 Score=63.17 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+.++|+|..||||||+++.|++.++..+.++.++|-+-
T Consensus 449 N~N~~I~G~sGsGKS~l~k~l~~~~~~~g~~viiiD~~~ 487 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGD 487 (844)
T ss_pred cccEEEEcCCCCCHHHHHHHHHHhhhccCCEEEEEeCCC
Confidence 457999999999999999999999998888888876653
No 456
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.28 E-value=0.015 Score=56.76 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 35 ~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
.++..|.++|..||||||+++.|+..+ |. -|+|+|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L---g~--~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL---GV--PFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc---CC--CEEeHH
Confidence 357799999999999999999999987 33 355877
No 457
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.013 Score=54.41 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||++.|+-..-....++.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 46799999999999999999998764333444554
No 458
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.28 E-value=0.019 Score=58.97 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEeCC
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (379)
..+++.|+.|+|||+|++.++|.+.+. +.++.|++++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 458999999999999999999999887 5678888775
No 459
>PRK13975 thymidylate kinase; Provisional
Probab=95.27 E-value=0.018 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
..|+|.|+.||||||+++.|+.++
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999998
No 460
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.27 E-value=0.015 Score=50.06 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+|+|+|+.|+|||||...|.+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999887653
No 461
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.12 Score=51.22 Aligned_cols=140 Identities=7% Similarity=-0.022 Sum_probs=77.9
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcCCCceEeeeeccccCCC
Q 017023 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPD 97 (379)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~ 97 (379)
-+.|+..++.+..+. -+.-.|+.|+.|+||.|+++.++.+++=... +.+-..--|=|+..+..
T Consensus 8 ~~~~~~l~~~~~~~r---l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~----------~~~~~Cg~C~sC~~~~~---- 70 (334)
T PRK07993 8 RPDYEQLVGSYQAGR---GHHALLIQALPGMGDDALIYALSRWLMCQQP----------QGHKSCGHCRGCQLMQA---- 70 (334)
T ss_pred hHHHHHHHHHHHcCC---cceEEeeECCCCCCHHHHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHc----
Confidence 357988888776432 3568999999999999999999999973221 11101111333334433
Q ss_pred CCCCCCCCCceeEEecCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCCcccccHHHHHHHHhh
Q 017023 98 LTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKY 177 (379)
Q Consensus 98 ~~~~~~~~p~~~~f~G~~sp~~~~~~y~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~lIINT~Gwv~g~G~~ll~~~i~~ 177 (379)
.+||. ..+.....+ ....-++.|+++.+....+= . ......+||+-.--+......-|.++++.
T Consensus 71 g~HPD-----~~~i~p~~~---~~~I~idqiR~l~~~~~~~~-----~---~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (334)
T PRK07993 71 GTHPD-----YYTLTPEKG---KSSLGVDAVREVTEKLYEHA-----R---LGGAKVVWLPDAALLTDAAANALLKTLEE 134 (334)
T ss_pred CCCCC-----EEEEecccc---cccCCHHHHHHHHHHHhhcc-----c---cCCceEEEEcchHhhCHHHHHHHHHHhcC
Confidence 23333 222222110 01234677777776554431 0 12334567776554444456666666666
Q ss_pred cCCCEEEEEeccc
Q 017023 178 ITPTHVVKINISF 190 (379)
Q Consensus 178 ~~p~~Iv~l~~~~ 190 (379)
=-+..++.+-.+.
T Consensus 135 Pp~~t~fiL~t~~ 147 (334)
T PRK07993 135 PPENTWFFLACRE 147 (334)
T ss_pred CCCCeEEEEEECC
Confidence 5556666665543
No 462
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.27 E-value=0.025 Score=50.33 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017023 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N 59 (379)
..+++.+.. .....+|+++|+.|||||||.+.|.+
T Consensus 7 ~~~~~~~~~---~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 7 YNVLSSLGL---YNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHHhhc---ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 445565532 22367899999999999999988765
No 463
>PLN02165 adenylate isopentenyltransferase
Probab=95.27 E-value=0.019 Score=56.59 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
.+..|+|+||.||||||++..|+..+- .-++++|--
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCChh
Confidence 467899999999999999999887751 245666643
No 464
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.27 E-value=0.016 Score=50.57 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
.+|+|+|+.|+|||||...+++.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 58999999999999998887653
No 465
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.27 E-value=0.015 Score=50.84 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N 59 (379)
.+|+|+|..|+|||||++.+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~ 26 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTD 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999988865
No 466
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.26 E-value=0.016 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||++.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 47799999999999999999998764
No 467
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.25 E-value=0.017 Score=50.49 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (379)
+|.|.|+.||||||+++.|++.+ + .-++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g--~~~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---S--LKLISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CceecHH
Confidence 68999999999999999999986 2 3356654
No 468
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.25 E-value=0.015 Score=53.70 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~ 69 (379)
++..+.|+|+.|+|||||.+.|+..+--....+.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 66 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 4779999999999999999999876533333443
No 469
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.25 E-value=0.021 Score=51.58 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (379)
.+.+|.|+||.|+|||||....+-+..-....+.+-+-|..+.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence 4679999999999999999999988876666666666665543
No 470
>PRK14526 adenylate kinase; Provisional
Probab=95.24 E-value=0.018 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+++|+|+.||||||+++.|+..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 471
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.24 E-value=0.014 Score=55.00 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
.+.++.|+|+.|+|||||.+.|+..+-
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 467999999999999999999987653
No 472
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.24 E-value=0.014 Score=53.96 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||++.|+...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999999999764
No 473
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.24 E-value=0.014 Score=49.70 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N 59 (379)
..+|+++|+.|+|||||+..|++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999888763
No 474
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.013 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 475
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.23 E-value=0.018 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998864
No 476
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.21 E-value=0.016 Score=50.30 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVN 59 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N 59 (379)
.+|+|+|+.|+|||||...+++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999877753
No 477
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.21 E-value=0.026 Score=62.29 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEeCCCC
Q 017023 39 IAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG 76 (379)
Q Consensus 39 ~vlv~G~k~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G 76 (379)
..+|+|+.|||||||+..|+..+++ .+.+|.++|-|-+
T Consensus 443 n~~I~G~tGsGKS~l~~~l~~~~~~~~g~~v~i~D~~~s 481 (811)
T PRK13873 443 HTLVVGPTGAGKSVLLALMALQFRRYPGAQVFAFDFGGS 481 (811)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhcCCCeEEEEeCCCC
Confidence 6899999999999999999999887 4778888887654
No 478
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.019 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999998654
No 479
>PRK12338 hypothetical protein; Provisional
Probab=95.21 E-value=0.016 Score=56.82 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
+..|+|+|+.||||||+|+.|+.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5689999999999999999999997
No 480
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.21 E-value=0.017 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||++.|+..+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47799999999999999999998764
No 481
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.018 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.|.|+...
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998753
No 482
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.19 E-value=0.017 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017023 38 PIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 38 ~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
.+|+|+|+.|||||||.+.+++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999877763
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.18 E-value=0.02 Score=53.58 Aligned_cols=41 Identities=32% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (379)
.-|.+++.||+|+||||-...|+..||...++=++++++-.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 46889999999999999999999999987777788888654
No 484
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.18 E-value=0.025 Score=53.45 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=31.4
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017023 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL 62 (379)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll 62 (379)
.+.-++++..+.... ...++.++|+|+.|+||||+++.+++.+-
T Consensus 25 ~~~~~~~~~~l~~~~-~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 25 SKGHKRAMAYLEYGL-SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CHHHHHHHHHHHHHH-hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344556666654321 12245799999999999999999998864
No 485
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.18 E-value=0.027 Score=54.35 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~ 65 (379)
+.-+++.|++|+||||+++.+++.+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34699999999999999999999987654
No 486
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.18 E-value=0.012 Score=55.27 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
.+-++=|+|..|||||||.|.|+.-.
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 47799999999999999999998765
No 487
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.18 E-value=0.014 Score=56.18 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~l 71 (379)
++..+.|+|+.|||||||+|.|+..+--...++.+-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD 67 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 467999999999999999999998654334455553
No 488
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.17 E-value=0.019 Score=52.69 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++..+.|+|+.|||||||.+.|+...--...++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 46789999999999999999998754222334444
No 489
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.17 E-value=0.031 Score=55.06 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=42.8
Q ss_pred cccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
+--.+.|+++.+.+..-..+ ..-|||+|..|+||++++|.+.+.--+.+..-+.+||..
T Consensus 9 iG~S~~~~~~~~~i~~~a~~--~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~ 67 (326)
T PRK11608 9 LGEANSFLEVLEQVSRLAPL--DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (326)
T ss_pred EECCHHHHHHHHHHHHHhCC--CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCC
Confidence 34567899999887542221 345999999999999999999876544555566677653
No 490
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.17 E-value=0.015 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++.++.|+|+.|+|||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999864
No 491
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.16 E-value=0.016 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ 60 (379)
+.-|+++|++|+||||++..|+.+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456999999999999999887775
No 492
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.16 E-value=0.048 Score=54.06 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=37.3
Q ss_pred cChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Q 017023 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (379)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (379)
++++|.+.+..+... ...++|+|+.|||||||.+.|++.+- ...++.+++
T Consensus 163 ~~~~~~~~L~~~v~~-----~~~ili~G~tGsGKTTll~al~~~i~-~~~riv~iE 212 (340)
T TIGR03819 163 FPPGVARLLRAIVAA-----RLAFLISGGTGSGKTTLLSALLALVA-PDERIVLVE 212 (340)
T ss_pred CCHHHHHHHHHHHhC-----CCeEEEECCCCCCHHHHHHHHHccCC-CCCcEEEEC
Confidence 677888888776532 35799999999999999999988753 334455543
No 493
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=95.15 E-value=0.026 Score=62.28 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCC
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (379)
.+.++|+|+.|+|||||++.|+..+.+.|.++.++|.+-
T Consensus 438 n~N~~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~ 476 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGN 476 (829)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCc
Confidence 456899999999999999999999999999998877753
No 494
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.016 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999997654
No 495
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.15 E-value=0.014 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~l 61 (379)
++..+.|+|+.|||||||.+.|+...
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999754
No 496
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.14 E-value=0.057 Score=52.29 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCcccChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 11 PSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 11 ~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
.+..+.+|+-..++++ .+..-|||.||.||||||-...++||+-+...+-++
T Consensus 107 ~~e~LglP~i~~~~~~--------~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIl 158 (353)
T COG2805 107 TLEELGLPPIVRELAE--------SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHIL 158 (353)
T ss_pred CHHHcCCCHHHHHHHh--------CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceE
Confidence 3445667777766543 124689999999999999999999998765444443
No 497
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.27 Score=49.05 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017023 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (379)
Q Consensus 37 ~~~vlv~G~k~sGKSTl~r~L~N~ll~~ 64 (379)
+..+++.|++|+||+|+++.+++.++..
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4579999999999999999999999853
No 498
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.14 E-value=0.024 Score=53.70 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~ 64 (379)
.+.+++|.|+.|+||||+++.++|.+-..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 47899999999999999999999987654
No 499
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.015 Score=55.97 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~ 70 (379)
++.++.|+|+.|||||||+|.|+..+--....+.+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 46799999999999999999999875433344544
No 500
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.014 Score=57.41 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEeCCCCC
Q 017023 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (379)
Q Consensus 36 ~~~~vlv~G~k~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (379)
++..+.|+|+.|||||||.+.|+..+-....+|.+-+-|.++
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence 477999999999999999999998764444566665445443
Done!