BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017025
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
           Related Protein
          Length = 239

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 31/246 (12%)

Query: 124 VMFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLY 183
           ++FLDYDGTL PI+ +P+ ++    +   + D+   F T IVTGR  +++  F+ L    
Sbjct: 3   LIFLDYDGTLVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFLPL---- 58

Query: 184 YAGSHGMDIEGPSKKRRYKKGNHGVLCQPASE-FLPMINEVYQTLLEKTKSIPGAKVENN 242
                  DI          K N  ++    S+ FL + + +Y+         PG ++   
Sbjct: 59  -------DINXICYHGACSKINGQIVYNNGSDRFLGVFDRIYEDTRSWVSDFPGLRIYRK 111

Query: 243 KFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIR-PTIKWDKGKALEFL 301
              +  H      +    L  ++  +   +   T   G+ ++E+R P +  +KG A+   
Sbjct: 112 NLAVLYHLGLXGADXKPKLRSRIEEIARIFGVETY-YGKXIIELRVPGV--NKGSAIR-- 166

Query: 302 LEALGYANSKDVVPVYI-GDDRTDEDAFKVLRNRGQGFGILVSKTPKETHASYSLQEPSE 360
                  + +   P  I GDD TDE AF+   +      + +     ETHA + + +  E
Sbjct: 167 -------SVRGERPAIIAGDDATDEAAFEANDD-----ALTIKVGEGETHAKFHVADYIE 214

Query: 361 VKDFLR 366
            +  L+
Sbjct: 215 XRKILK 220


>pdb|2FE7|A Chain A, The Crystal Structure Of A Probable N-Acetyltransferase
           From Pseudomonas Aeruginosa
 pdb|2FE7|B Chain B, The Crystal Structure Of A Probable N-Acetyltransferase
           From Pseudomonas Aeruginosa
          Length = 166

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 279 QGRMVLEIRPTIKWDKGKALEFLLEALGYANSKDVV 314
           QG M LEIRP +  D  + L F++E   Y  ++  V
Sbjct: 6   QGHMTLEIRPAVPADAEQILAFIIELADYERARHEV 41


>pdb|3VND|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|C Chain C, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|D Chain D, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|E Chain E, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|F Chain F, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|G Chain G, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
 pdb|3VND|H Chain H, Crystal Structure Of Tryptophan Synthase Alpha-subunit
           From The Psychrophile Shewanella Frigidimarina K14-2
          Length = 267

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 9/67 (13%)

Query: 308 ANSKDVVPVYIGDDRTDEDAFKVLRNRGQGFGILVSK---TPKETHASYSLQEPSEVKDF 364
           A +  + P++I     D D  K++  +G+G+  L+S+   T  E+ A     EP  +++ 
Sbjct: 144 AKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAG----EP--IENI 197

Query: 365 LRRLVQW 371
           L +L ++
Sbjct: 198 LTQLAEF 204


>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
           Pyrococcus Horikoshii.
 pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
           Pyrococcus Horikoshii
          Length = 231

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)

Query: 293 DKGKALEFLLEALGYANSKDVVPVYIGDDRTDEDAFKVLRNRGQGFGILVSKTPK 347
           +KG  +E   E LG    K+V   ++GD   D DAFKV+     G+ + V++ PK
Sbjct: 153 NKGSGIEKASEFLGI-KPKEVA--HVGDGENDLDAFKVV-----GYKVAVAQAPK 199


>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
           Methyltransferase
 pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
           Methyltransferase
          Length = 374

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 24/146 (16%)

Query: 56  RKPTDTTDQGGNKI-------NAWVNSLRASSPTRLKSSIAFSPQTEEQTSW-IARHPSA 107
           R   D TDQGG  +       +AW + +R       +  +A     E++  + I  +  +
Sbjct: 228 RTSVDPTDQGGAGLLFGTHFQDAWDDLVR-------EGLVA----AEKRDGFNIPVYAPS 276

Query: 108 LSKFEEIVNASKGKKIVMFLDYDGTLAPIVEDPDRAF-MTNEMREAVRDVARYFPTAIVT 166
           L  F+E+V+A+    I   + Y G    +V +PD A  +      + R VA     A + 
Sbjct: 277 LQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIG 336

Query: 167 GRCRDKVFSFVKLAGLYYAGSHGMDI 192
               +K+FS V+      A SH  D+
Sbjct: 337 EELSNKLFSRVE----SRATSHAKDV 358


>pdb|3Q1H|A Chain A, Crystal Structure Of Dihydrofolate Reductase From Yersinia
           Pestis
          Length = 163

 Score = 28.1 bits (61), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 81  PTRLKSSIAFSPQTEEQTSWIARHPSALS---KFEEIVNASKGKKIVMFLD 128
           P RL   I+  P T+E+ +W A    AL+     EE++    G+    FLD
Sbjct: 59  PGRLNIVISSQPGTDERVTWAASIEEALAFAGNAEEVMVMGGGRVYKQFLD 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,372,551
Number of Sequences: 62578
Number of extensions: 483984
Number of successful extensions: 1203
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 8
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)