BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017027
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AXQ|A Chain A, Apo Histidine-Tagged Saccharopine Dehydrogenase (L-Glu
Forming) From Saccharomyces Cerevisiae
Length = 467
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 284 GWKCYKQRTPLAFFSHQHVPEQLVVLKEVLRRMRFPVYLQDITTMSALRRDGH 336
+ CY R F H+PE V++ LR FP +++ + M L+ D +
Sbjct: 237 AFVCYPNRDSTLFKDLYHIPEAETVIRGTLRYQGFPEFVKALVDMGMLKDDAN 289
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 309 LKEVLRRMRFPVYLQDITTMS-ALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGV 367
LKE++RRM VY + + S +L R G Y GQE Q + F+ + + LPG
Sbjct: 46 LKELMRRM---VYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGY 102
Query: 368 PD 369
D
Sbjct: 103 RD 104
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 309 LKEVLRRMRFPVYLQDITTMS-ALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGV 367
LKE++RRM VY + + S +L R G Y GQE Q + F+ + + LPG
Sbjct: 47 LKELMRRM---VYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGY 103
Query: 368 PD 369
D
Sbjct: 104 RD 105
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 309 LKEVLRRMRFPVYLQDITTMS-ALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGV 367
LKE++RRM VY + + S +L R G Y GQE Q + F+ + + LPG
Sbjct: 46 LKELMRRM---VYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGY 102
Query: 368 PD 369
D
Sbjct: 103 RD 104
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 309 LKEVLRRMRFPVYLQDITTMS-ALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGV 367
LKE++RRM VY + + S +L R G Y GQE Q + F+ + + LPG
Sbjct: 47 LKELMRRM---VYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGY 103
Query: 368 PD 369
D
Sbjct: 104 RD 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,031,698
Number of Sequences: 62578
Number of extensions: 506196
Number of successful extensions: 983
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 8
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)