BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017027
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38999|LYS9_YEAST Saccharopine dehydrogenase [NADP(+), L-glutamate-forming]
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=LYS9 PE=1 SV=1
Length = 446
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 287 CYKQRTPLAFFSHQHVPEQLVVLKEVLRRMRFPVYLQDITTMSALRRDGH 336
CY R F H+PE V++ LR FP +++ + M L+ D +
Sbjct: 219 CYPNRDSTLFKDLYHIPEAETVIRGTLRYQGFPEFVKALVDMGMLKDDAN 268
>sp|P21881|ODPA_BACSU Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
subtilis (strain 168) GN=pdhA PE=1 SV=3
Length = 371
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 309 LKEVLRRMRFPVYLQDITTMSALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGVP 368
LKE++RRM F L D ++S L R G Y GQE Q + F+ + + LPG
Sbjct: 49 LKELMRRMVFTRVL-DQRSIS-LNRQGRLGFYAPTAGQEASQIATHFALEKEDFVLPGYR 106
Query: 369 D 369
D
Sbjct: 107 D 107
>sp|Q4MTG0|ODPA_BACCE Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
cereus GN=pdhA PE=1 SV=3
Length = 371
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 309 LKEVLRRMRFPVYLQDITTMSALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGVP 368
LKE++RRM + L D ++S L R G Y GQE Q + F+ + + LPG
Sbjct: 49 LKELMRRMVYTRVL-DQRSIS-LNRQGRLGFYAPTAGQEASQLASHFALEAEDFILPGYR 106
Query: 369 D 369
D
Sbjct: 107 D 107
>sp|A8GJU7|CCA_SERP5 Multifunctional CCA protein OS=Serratia proteamaculans (strain 568)
GN=cca PE=3 SV=1
Length = 414
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 173 IEFSWAPLLVELMKGPENKRILHLDLIEDNARYWRGADVLVFDSAHWWTHSE---QWSSW 229
+ FS AP ELM+ + R ++ + W +E Q S
Sbjct: 148 LGFSIAPETAELMR-----------------QMARSGELAALTAERVWKETEKALQSQSP 190
Query: 230 DYY---MEGKSVYKVMNPMIAYEKGLTTWAKW---IDLNIDPRRTRVIFRSMSPRHNREN 283
Y + V+ P I G+ AKW ID I T I +SP +
Sbjct: 191 QVYFQVLRDCEALGVLFPEIDTLFGVPAPAKWHPEIDTGIHTLMTLAIAAQLSPEVDVRF 250
Query: 284 GWKCY---KQRTPLAFFSHQHV--PEQLVVLKEVLRRMRFPVYLQDITTMSA 330
C+ K +TP + H H P +++++ + RR+R P ++D+ + A
Sbjct: 251 SALCHDLGKGQTPKELWPHHHGHGPAGVLLVEALCRRLRVPNPVRDLAKLVA 302
>sp|B6YW36|Y1911_THEON UPF0218 protein TON_1911 OS=Thermococcus onnurineus (strain NA1)
GN=TON_1911 PE=3 SV=1
Length = 177
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 291 RTPLAFFSHQHVPEQLVVLKEVLRRMRFPVYLQDITTMSALRRDGHPSVYRRAMGQEERQ 350
+ PL +P+ ++++E L R R V + D+ T + LR PS+ + ++
Sbjct: 15 KDPLGKLIRGEIPKPYLMIREELERARHVVTVGDVVTENVLRLGIKPSLAIYDHKTKRQE 74
Query: 351 HSKDFSSDCSHWCLPGVPDSWNEML 375
+S D SD + P + + L
Sbjct: 75 YSPDIESDAVIMTVQNPPGTITKAL 99
>sp|Q1BDD4|EFG_MYCSS Elongation factor G OS=Mycobacterium sp. (strain MCS) GN=fusA PE=3
SV=1
Length = 701
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 175 FSWAPLLVELMKGPENKRILHLDLIEDNARYWRGADVL 212
PL+++L G EN I +DL+E A+ WRG L
Sbjct: 158 LGATPLVIQLPIGAENDFIGIIDLVEMKAKVWRGETAL 195
>sp|A1UBL0|EFG_MYCSK Elongation factor G OS=Mycobacterium sp. (strain KMS) GN=fusA PE=3
SV=1
Length = 701
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 175 FSWAPLLVELMKGPENKRILHLDLIEDNARYWRGADVL 212
PL+++L G EN I +DL+E A+ WRG L
Sbjct: 158 LGATPLVIQLPIGAENDFIGIIDLVEMKAKVWRGETAL 195
>sp|A3PV95|EFG_MYCSJ Elongation factor G OS=Mycobacterium sp. (strain JLS) GN=fusA PE=3
SV=1
Length = 701
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 175 FSWAPLLVELMKGPENKRILHLDLIEDNARYWRGADVL 212
PL+++L G EN I +DL+E A+ WRG L
Sbjct: 158 LGATPLVIQLPIGAENDFIGIIDLVEMKAKVWRGETAL 195
>sp|P21873|ODPA_GEOSE Pyruvate dehydrogenase E1 component subunit alpha OS=Geobacillus
stearothermophilus GN=pdhA PE=1 SV=2
Length = 369
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 309 LKEVLRRMRFPVYLQDITTMS-ALRRDGHPSVYRRAMGQEERQHSKDFSSDCSHWCLPGV 367
LKE++RRM VY + + S +L R G Y GQE Q + F+ + + LPG
Sbjct: 47 LKELMRRM---VYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGY 103
Query: 368 PD 369
D
Sbjct: 104 RD 105
>sp|A4T1R3|EFG_MYCGI Elongation factor G OS=Mycobacterium gilvum (strain PYR-GCK)
GN=fusA PE=3 SV=1
Length = 700
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 179 PLLVELMKGPENKRILHLDLIEDNARYWRGADVL 212
PL+++L G EN I +DL+E A+ WRG L
Sbjct: 161 PLVIQLPIGAENDFIGIIDLVEMKAKVWRGETAL 194
>sp|P40806|PKSJ_BACSU Polyketide synthase PksJ OS=Bacillus subtilis (strain 168) GN=pksJ
PE=1 SV=3
Length = 5043
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 142 CLVQGVVPMGRKKVTYNGLSMAFHALDFETSIEFSWAPLLVELMKGPENKRILHLDLIED 201
++Q +VP+ ++K + G+S F + IEFS V ++ PE LHL L +D
Sbjct: 2755 IIIQAIVPLEKEKQLFAGVSGLFKTAE----IEFSKLTAQVIEIEKPEEMIDLHLKLKDD 2810
Query: 202 NAR 204
+ R
Sbjct: 2811 SRR 2813
>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
Length = 781
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 101 WKPHACSIPRFDALKYLAKMRRKRIMLVGDSIMRNQWESLV 141
W+P+ C + ++ + + +R KRI VGDS +R + S +
Sbjct: 64 WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFI 104
>sp|P15396|ENPP3_BOVIN Ectonucleotide pyrophosphatase/phosphodiesterase family member 3
OS=Bos taurus GN=ENPP3 PE=1 SV=2
Length = 874
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 20/86 (23%)
Query: 200 EDNARYWRGADVLVFDSAHWWTHSEQ--------WSSWDYYMEGK--SVYKVMNPMIAYE 249
+DN +W+G + W T Q W D + G S+YK+ N + YE
Sbjct: 244 KDNPAWWQGQPI-------WLTAMYQGLKVGTYFWPGSDVAINGTFPSIYKIYNRSVTYE 296
Query: 250 KGLTTWAKWIDLNIDPRRTRVIFRSM 275
+ + T KW+DL P+ R F ++
Sbjct: 297 ERIFTLLKWLDL---PKAERPDFYTI 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,489,489
Number of Sequences: 539616
Number of extensions: 6233483
Number of successful extensions: 12137
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12128
Number of HSP's gapped (non-prelim): 16
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)