BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017028
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
 pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
          Length = 149

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 262 KLIQLV--GKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 319
           K+I LV   KA+S L   +LK    +   I  RD   A  +   + EYE + R   +   
Sbjct: 9   KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPRPNLILLD 68

Query: 320 LKFVEHN-IHFLQEVIQNRRSDLLEWCIIFLLTIEN---VISVYEI 361
           L   + +    L E+ QN   DL    ++ L T  N   VI+ YE+
Sbjct: 69  LNLPKKDGREVLAEIKQN--PDLKRIPVVVLTTSHNEDDVIASYEL 112


>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
           Regulator Rcp1
 pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
           Regulator Rcp1
          Length = 147

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 262 KLIQLV--GKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 319
           K+I LV   KA+S L   +LK    +   I  RD   A  +   + EYE + R   +   
Sbjct: 9   KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLD 68

Query: 320 LKFVEHN-IHFLQEVIQNRRSDLLEWCIIFLLTIEN---VISVYEI 361
           L   + +    L E+ QN   DL    ++ L T  N   VI+ YE+
Sbjct: 69  LNLPKKDGREVLAEIKQN--PDLKRIPVVVLTTSHNEDDVIASYEL 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,077,674
Number of Sequences: 62578
Number of extensions: 455089
Number of successful extensions: 993
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 5
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)