BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017028
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RMD1 PE=1 SV=1
Length = 430
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 108/231 (46%), Gaps = 23/231 (9%)
Query: 146 MVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKE---------KPLLA 196
+ +F YG V++ + E + +L+ I + L E +D ++E +P +
Sbjct: 205 LFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAE---EDIQVEEFNYYVTKSYQPRIY 261
Query: 197 ED---MQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKT 253
D ++ G +Y+V + I + QS+ + F VD +E+ I + + +
Sbjct: 262 NDFITLRDGSNYMVKLS--------ISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYS 313
Query: 254 GTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRF 313
G +M + +++ +G+ ++ L + + EI W + + IY+ R E+ QR
Sbjct: 314 GKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRV 373
Query: 314 GNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
L+ +L+ + + L+E + + + LE+ +I L+ +E +ISV IV D
Sbjct: 374 SLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVD 424
>sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=sif2 PE=1 SV=2
Length = 382
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 10/272 (3%)
Query: 100 SMQAENLTHVVPPSSRSTKYIALRYSDFPSEISAL---GVHGNVSHCRYMVVFHYGSAVL 156
S E T ++P + S++ R S S S G+ N R + F YG VL
Sbjct: 109 SYNNEETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYGVVVL 168
Query: 157 FNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGP---DYIVLKNLDT 213
+ E +L + R + +++ +D ++E + D+I L++
Sbjct: 169 WGYTIDEEHRFLRELGRFE---IEKLKIEDMEVEEFNYYITTLYQPRIFNDFIALRDASN 225
Query: 214 DSVRV-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANS 272
+R+ I + QS+ + F V+ ++ + + +TG + R +++ VG+
Sbjct: 226 YMIRLSISHAIAQSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFI 285
Query: 273 NLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 332
++ L+ + + E+ W + + IY R E+ QR L+ +++ + + L+E
Sbjct: 286 LRININLQGSVLDSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKE 345
Query: 333 VIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 364
I + + LEW ++ L+ + +I+++ IV D
Sbjct: 346 QITHTHDESLEWIVVILMGLLVLIALFSIVVD 377
>sp|Q05648|YD282_YEAST Uncharacterized protein YDR282C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YDR282C PE=3 SV=1
Length = 414
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 32/261 (12%)
Query: 127 FPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDD 186
P EI + N + M++ GS V + + V N + I + AS L + +D
Sbjct: 136 IPDEIVSFSYQDNGNKGDVMILGQNGSIVSWGFSESSVRNCIVPIVKAAS--LNPLNGED 193
Query: 187 YAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIG--SVLGQSMALDYFVSQVDCLVEEFA 244
+ ++ + +++G D+ L +LD I S L + + + ++++ A
Sbjct: 194 FETEDMDYV--EIEGEQDFDKLSSLDNKVTPRIACESFLSGDLIIINSLDSDQGMLDKAA 251
Query: 245 ---GINR---------AMEKTGTFTMDRTKLIQLVGKANSNLADVILKVG---------- 282
G++R AMEK + T T+ I K N +D + +G
Sbjct: 252 FSSGLSRSTNLAVLEEAMEKHISKTRTITENISKGTKLNLRSSDALKSIGRLFLIRGKLN 311
Query: 283 ----LFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 338
L E ++ W + + +I++ + ++ R L+ KL + L ++ R
Sbjct: 312 LYSELIETPDLYWSEPQLEEIFKNVSRYLDIGPRINILNSKLDYSTDECRALISLLNERN 371
Query: 339 SDLLEWCIIFLLTIENVISVY 359
S LEW II+L+ E +Y
Sbjct: 372 STFLEWIIIYLIAFELCFEIY 392
>sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RMD8 PE=1 SV=1
Length = 662
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 20/237 (8%)
Query: 138 GNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIR--RHASGMLPEMRKDDYAIK----- 190
GN H + +FHYG V +N + + +N L I + + M+ + + D +
Sbjct: 420 GNDRHAE-IFIFHYGVIVFWNFTEIQEKNILGDITFADYKNLMIRPLDEQDIETEQFHFE 478
Query: 191 -----EKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAG 245
E+P + D+ + L++ D + + QS L F S++ ++
Sbjct: 479 YDRDTERPRIFNDI------VTLRSGDHIIELTLSHAIAQSSKLSRFESRISPILISVTK 532
Query: 246 INRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWR-DAKYAQIYEYLR 304
+ + + GT + R +L++ GK DV L + + E W + +Y +R
Sbjct: 533 LPKRLALYGTLGLKREQLLKKSGKLFKLRVDVNLSSTILDTPEFFWSFEPSLHPLYVAMR 592
Query: 305 EEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEI 361
E E+ QR L+ + K + + R + W I ++ + S+ EI
Sbjct: 593 EYLEIDQRVQVLNDRCKVFLEFFDICVDSVAERNMARVTWWFILVILFGVIFSLTEI 649
>sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus
musculus GN=Rmnd1 PE=2 SV=1
Length = 450
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/213 (18%), Positives = 92/213 (43%), Gaps = 8/213 (3%)
Query: 148 VFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIV 207
+F G+AV +N+++ +++ + ++ RH + E+ + +E + + Q
Sbjct: 229 LFREGAAVFWNVKEKTMKHVMQVLERHETQPY-EVALVHWENEELNYIKTEGQSKLHRGE 287
Query: 208 LK---NLDTDSVRV----IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDR 260
+K LD D + + L S+ L + + +D +E I A++ +
Sbjct: 288 IKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSH 347
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKL 320
+++Q +G+ + + L + W A ++Y+ + + +R ++ KL
Sbjct: 348 KEVMQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKL 407
Query: 321 KFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 353
+ ++ + +R+ LEW I+ L+TIE
Sbjct: 408 QHCMELTDLMRNHLNEKRALRLEWMIVILITIE 440
>sp|P29707|ATPB_PROMO ATP synthase subunit beta, sodium ion specific OS=Propionigenium
modestum GN=atpD PE=1 SV=2
Length = 467
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 274 LADVILKVGLFERSEIAWRDAKYA-QIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 332
L D+I +G+ E S+ A +I + + + VA++F +D K V+ I +E
Sbjct: 373 LQDIIAILGMDELSDEDKVTVNRARKIERFFSQPFHVAEQFTGMDGKYVTVKETIRGFKE 432
Query: 333 VIQNRRSDLLEWCIIFLLTIENVIS 357
+I+ + DL E +++ TI+ I+
Sbjct: 433 IIEGKHDDLPEQAFLYVGTIDEAIA 457
>sp|B3QUP6|ATPB_CHLT3 ATP synthase subunit beta OS=Chloroherpeton thalassium (strain ATCC
35110 / GB-78) GN=atpD PE=3 SV=1
Length = 465
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 259 DRTKLIQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLD 317
D + ++ + + +L D+I +G+ E S E A+ ++ +L + + VA++F L+
Sbjct: 358 DTAQAVKQILQRYKDLQDIIAILGMDELSDEDKLLVARARKVQRFLSQPFFVAEQFTGLE 417
Query: 318 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K +E I +E+I+ R L E + TIE+ I
Sbjct: 418 GKYVRLEDTIKAFKEIIEGRHDSLPENAFYLVGTIEDAI 456
>sp|Q3A946|ATPB_CARHZ ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1
Length = 473
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 264 IQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKF 322
+Q V + L D+I +G+ E S E A+ ++ +L + + VA+ F K
Sbjct: 370 VQRVLQRYKELQDIIAILGMDELSDEDKLIVARARKLQRFLSQPFTVAEAFTGRPGKYVP 429
Query: 323 VEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
V+ I +E+++ + D+ E C TI+ V+
Sbjct: 430 VKETIRGFKEILEGKHDDIPETCFYMAGTIDEVV 463
>sp|B3EJK9|ATPB_CHLPB ATP synthase subunit beta OS=Chlorobium phaeobacteroides (strain
BS1) GN=atpD PE=3 SV=1
Length = 462
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 273 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 331
+L D+I +G+ E S E ++ +I +L + + VA+ F L+ K +E I
Sbjct: 372 DLQDIIAILGMDELSDEDKLTVSRARKIQRFLSQPFFVAEAFTGLEGKYVKLEDTIKGFN 431
Query: 332 EVIQNRRSDLLEWCIIFLLTIENVI 356
E+I + DL E + TIE +
Sbjct: 432 EIIDGKHDDLPESAFYLVGTIEEAV 456
>sp|A6LJR1|ATPB_THEM4 ATP synthase subunit beta OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=atpD PE=3 SV=1
Length = 469
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 264 IQLVGKANSNLADVILKVGLFERSE----IAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 319
+Q V + +L D+I +G+ E SE I R K I +L + VA++F N+ K
Sbjct: 367 VQEVLQRYKDLQDIIAILGMEELSEEDKLIVQRARK---IERFLSQPVHVAEKFSNIPGK 423
Query: 320 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
+ I +E+++ + DL E + TI+ +
Sbjct: 424 YVPISETIRGFKEILEGKYDDLPEMAFYMVGTIDEAV 460
>sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo
abelii GN=RMND1 PE=2 SV=1
Length = 449
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/217 (17%), Positives = 92/217 (42%), Gaps = 18/217 (8%)
Query: 149 FHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAI---KEKPLLAEDMQGGP-- 203
F G+AV +N++D +++ + ++ +H E++ + A+ + + L ++G
Sbjct: 229 FREGAAVFWNVKDKTMKHVMKVLEKH------EIQPYEIALVHWENEELNYIKIEGQSKL 282
Query: 204 ---DYIVLKNLDTDSVRV----IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTF 256
+ + LD D + + L S+ L + + +D +E I A++
Sbjct: 283 HRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKV 342
Query: 257 TMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNL 316
+ +++Q +G+ + + L + W +Y+ + + +R +
Sbjct: 343 KLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVM 402
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 353
+ KL+ ++ + +R+ LEW I+ L+TIE
Sbjct: 403 NEKLQHCMEPTDLMRNHLNEKRALRLEWMIVILITIE 439
>sp|Q8KAC9|ATPB2_CHLTE ATP synthase subunit beta 2 OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=atpD2 PE=3 SV=1
Length = 462
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 273 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 331
+L D+I +G+ E S E A+ ++ +L + + VA+ F L K +E I +
Sbjct: 372 DLQDIIAILGMDELSDEDKLVVARARKVQRFLSQPFFVAEAFTGLAGKYVKLEDTIKGFK 431
Query: 332 EVIQNRRSDLLEWCIIFLLTIENVIS 357
E+I R +L E + TIE ++
Sbjct: 432 EIIDGRHDNLPEAAFYLVGTIEEAVA 457
>sp|B7IG44|ATPB_THEAB ATP synthase subunit beta OS=Thermosipho africanus (strain TCF52B)
GN=atpD PE=3 SV=1
Length = 470
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 272 SNLADVILKVGLFERSE----IAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNI 327
+L D+I +G+ E SE I R K I +L + VA++F N+ K + I
Sbjct: 376 KDLQDIIAILGMEELSEEDKLIVQRARK---IERFLSQPVHVAEKFSNIPGKYVPINETI 432
Query: 328 HFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
+E+++ + DL E + TI+ +
Sbjct: 433 RGFKEILEGKYDDLPEMAFYMVGTIDEAV 461
>sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo
sapiens GN=RMND1 PE=1 SV=2
Length = 449
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/217 (17%), Positives = 92/217 (42%), Gaps = 18/217 (8%)
Query: 149 FHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAI---KEKPLLAEDMQGGP-- 203
F G+AV +N++D +++ + ++ +H E++ + A+ + + L ++G
Sbjct: 229 FREGAAVFWNVKDKTMKHVMKVLEKH------EIQPYEIALVHWENEELNYIKIEGQSKL 282
Query: 204 ---DYIVLKNLDTDSVRV----IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTF 256
+ + LD D + + L S+ L + + +D +E I A++
Sbjct: 283 HRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKV 342
Query: 257 TMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNL 316
+ +++Q +G+ + + L + W +Y+ + + +R +
Sbjct: 343 KLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVM 402
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 353
+ KL+ ++ + +R+ LEW I+ L+TIE
Sbjct: 403 NEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIE 439
>sp|B5YJJ2|NADA_THEYD Quinolinate synthase A OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=nadA PE=3 SV=1
Length = 303
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 206 IVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQ 265
I+ N + V+ I +G S+ L ++VDC V F G++ E D+T L+
Sbjct: 20 ILAHNYQREEVQEIADFVGDSLELSRQATKVDCDVIVFCGVHFMAETAAILNPDKTVLLP 79
Query: 266 LVGKANSNLADVILKVGLFERSEIAWRDA-KYAQIYEYLREEYEV 309
+ A +AD + V +R W D YA I Y+ EV
Sbjct: 80 EID-AGCPMADTV-DVEELKR----WIDRYPYAPIVSYVNTTAEV 118
>sp|A4SC45|ATPB_PROVI ATP synthase subunit beta OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=atpD PE=3 SV=1
Length = 462
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 259 DRTKLIQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLD 317
D + ++++ + +L D+I +G+ E S E ++ ++ +L + + VA+ F L
Sbjct: 358 DTAQAVKMILQRYKDLQDIIAILGMDELSDEDKLVVSRARKVQRFLSQPFFVAEAFTGLS 417
Query: 318 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K +E I +E+I + +L E + TIE I
Sbjct: 418 GKYVKLEETIKGFKEIIAGKHDNLPENAFYLVGTIEEAI 456
>sp|A5G9D8|ATPB_GEOUR ATP synthase subunit beta OS=Geobacter uraniireducens (strain Rf4)
GN=atpD PE=3 SV=1
Length = 470
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 316
+ +Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGA 422
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K ++ I QE++ + D+ E + TIE I
Sbjct: 423 PGKYVELKDTIKGFQEIVAGKHDDVPEQAFYLVGTIEEAI 462
>sp|Q3B6W8|ATPB1_PELLD ATP synthase subunit beta 1 OS=Pelodictyon luteolum (strain DSM
273) GN=atpD1 PE=3 SV=2
Length = 462
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 273 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 331
+L D+I +G+ E S E A+ ++ +L + + VA+ F L K +E +I +
Sbjct: 372 DLQDIIAILGMDELSDEDKLVVARARKVQRFLSQPFFVAEAFTGLAGKYVKLEDSIKGFK 431
Query: 332 EVIQNRRSDLLEWCIIFLLTIENVI 356
E+I + +L E + TIE I
Sbjct: 432 EIIAGKHDNLPEGAFYLVGTIEEAI 456
>sp|B5EFI7|ATPB_GEOBB ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1
Length = 470
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 316
+ +Q V + +L D+I +G+ E SE D A+ +I ++L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQKFLSQPFHVAEAFTGS 422
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K ++ I E+I + DL E + TIE I
Sbjct: 423 PGKYVELKDTIKGFSEIIAGKHDDLPEQAFYMVGTIEEAI 462
>sp|C6E9F1|ATPB_GEOSM ATP synthase subunit beta OS=Geobacter sp. (strain M21) GN=atpD
PE=3 SV=1
Length = 470
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 316
+ +Q V + +L D+I +G+ E SE D A+ +I ++L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQKFLSQPFHVAEAFTGS 422
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K ++ I E+I + DL E + TIE I
Sbjct: 423 PGKYVELKDTIKGFSEIIAGKHDDLPEQAFYMVGTIEEAI 462
>sp|P35110|ATPB_CHLLI ATP synthase subunit beta OS=Chlorobium limicola GN=atpD PE=3 SV=1
Length = 462
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 259 DRTKLIQLVGKANSNLADVILKVGLFERSEI-AWRDAKYAQIYEYLREEYEVAQRFGNLD 317
D + ++ + + +L D+I +G+ E S+ A+ ++ +L + + VA+ F L
Sbjct: 358 DTAQAVKQILQRYKDLQDIIAILGMDELSDDDKLVVARARKVQRFLSQPFFVAEAFTGLA 417
Query: 318 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVIS 357
K +E I +E+I R +L E + TIE ++
Sbjct: 418 GKYVKLEDTIKGFKEIIAGRHDNLPEAAFYLVGTIEEAVA 457
>sp|Q0BQE8|ATPB_GRABC ATP synthase subunit beta OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1
Length = 476
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 264 IQLVGKANSNLADVILKVGLFERSE-IAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKF 322
+Q + + +L D+I +G+ E SE A+ +I ++ + + VA+ F
Sbjct: 373 VQRILQTYKSLQDIIAILGMDELSEEDKLTVARARKIERFMSQPFHVAEVFTGSPGVFVS 432
Query: 323 VEHNIHFLQEVIQNRRSDLLEWCIIFLLTIEN 354
+E + +E+++ + DL E + + TIE+
Sbjct: 433 IEDTVRSFKEIVEGKHDDLPEAAFLMVGTIED 464
>sp|Q39Q56|ATPB_GEOMG ATP synthase subunit beta OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=atpD PE=3 SV=1
Length = 470
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 316
+ +Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGS 422
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K ++ I QE++ + D+ E + TIE +
Sbjct: 423 PGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEAL 462
>sp|Q8VZM7|POLL1_ARATH Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana
GN=At5g02940 PE=2 SV=1
Length = 813
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 24 NLFSHLEHLQSLKSPLFDRCFFFNLRHFSAIPHRL-------CTELDSGSVDFHPN--YG 74
+L HL + +F+ C F NL RL C L G V+FHPN
Sbjct: 422 DLIKIYRHLLNYSKNVFNLCSFPNLTGMKYRQLRLGFQEVVVCGILRDGKVNFHPNDDEE 481
Query: 75 LADEDEEIGKIPVKAYFLSTSIDLKSMQAENLT 107
L + D+ + P+K FL T M+ EN+T
Sbjct: 482 LMETDKLLFIAPLKKDFLYT-----DMKTENMT 509
>sp|Q74GY0|ATPB_GEOSL ATP synthase subunit beta OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=atpD PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 316
+ +Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGS 422
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K ++ I QE++ + D+ E + TIE +
Sbjct: 423 PGKYVELKDTIKGFQEIVAGKHDDVPEQAFYMVGTIEEAL 462
>sp|Q74H71|NADA_GEOSL Quinolinate synthase A OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=nadA PE=3 SV=1
Length = 304
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 214 DSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSN 273
D V+ I + G S+AL ++ D V F G++ E + D+T L+ + A
Sbjct: 29 DEVQEIADITGDSLALSQEAARTDADVIVFCGVHFMAESASILSPDKTVLLPRMD-AGCP 87
Query: 274 LADVILKVGLFE 285
+AD++ L E
Sbjct: 88 MADMVTAEALLE 99
>sp|Q939J8|PSEI_CAMJJ Pseudaminic acid synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=pseI PE=3 SV=1
Length = 343
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 271 NSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFL 330
NS+ D I+K GL+++ ++ YE+ + +E AQ G L F F + +I FL
Sbjct: 57 NSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGILCFSSPFAKEDIEFL 116
Query: 331 QEVIQNRRSDLLEWCII-FLLTIENVISVYEIVRDSTGVSLDLACR 375
+R D + + I F EN + + + T VS +A
Sbjct: 117 ------KRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATE 156
>sp|B9LZ84|ATPB_GEOSF ATP synthase subunit beta OS=Geobacter sp. (strain FRC-32) GN=atpD
PE=3 SV=1
Length = 470
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 261 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 316
+ +Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGS 422
Query: 317 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 356
K ++ I +E++ + D+ E + TIE I
Sbjct: 423 PGKYVELKDTIKGFKEIVDGKHDDIPEQAFYMVGTIEEAI 462
>sp|P23172|RDRP_SCVLB Probable RNA-directed RNA polymerase OS=Saccharomyces cerevisiae
virus L-BC GN=gag-pol PE=2 SV=2
Length = 1512
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 248 RAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEY 307
RA + GT D +KL +L N +V + RS+I + YA++ E+ RE +
Sbjct: 935 RAKQAQGTVKYDMSKLFELNVLENGVDEEVDWEKEKRNRSDIKTVNISYAKVLEHCRELF 994
Query: 308 EVAQRFGNLDFKLKFVEH 325
+A+ G ++K+ E+
Sbjct: 995 IMARAEGKRPMRMKWQEY 1012
>sp|Q0P8U0|PSEI_CAMJE Pseudaminic acid synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=pseI PE=1 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 271 NSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFL 330
NS+ D I+K GL+++ ++ YE+ + +E AQ G L F F + ++ FL
Sbjct: 57 NSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGILCFSSPFAKEDVEFL 116
Query: 331 QEVIQNRRSDLLEWCII-FLLTIENVISVYEIVRDSTGVSLDLACR 375
+R D + + I F EN + + + T VS +A
Sbjct: 117 ------KRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATE 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,785,891
Number of Sequences: 539616
Number of extensions: 5888215
Number of successful extensions: 13956
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 13942
Number of HSP's gapped (non-prelim): 44
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)