Query 017028
Match_columns 379
No_of_seqs 188 out of 496
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ais_A TBP, protein (tata-bind 73.8 16 0.00054 32.5 9.1 69 87-173 106-176 (182)
2 2z8u_A Tata-box-binding protei 72.7 15 0.00052 32.9 8.7 69 86-172 109-179 (188)
3 1mp9_A Tata-binding protein; t 65.5 23 0.00078 31.9 8.3 68 86-171 109-178 (198)
4 3eik_A Tata-box-binding protei 62.4 49 0.0017 30.3 10.0 60 86-163 48-108 (218)
5 3ck6_A Putative membrane trans 56.4 83 0.0029 28.1 10.6 47 206-252 108-162 (252)
6 1ais_A TBP, protein (tata-bind 56.3 35 0.0012 30.3 7.7 71 86-174 14-90 (182)
7 1ytb_A Protein (tata binding p 55.0 60 0.002 28.7 9.0 71 86-174 10-86 (180)
8 1mp9_A Tata-binding protein; t 54.4 64 0.0022 29.0 9.2 70 86-173 18-93 (198)
9 1ytb_A Protein (tata binding p 51.2 68 0.0023 28.3 8.8 71 86-174 100-173 (180)
10 2iub_A CORA, divalent cation t 50.2 1.5E+02 0.005 28.4 11.8 49 310-358 267-315 (363)
11 2z8u_A Tata-box-binding protei 49.7 69 0.0024 28.5 8.6 71 86-174 18-94 (188)
12 3eik_A Tata-box-binding protei 46.9 81 0.0028 28.8 8.7 71 86-174 138-211 (218)
13 2pnv_A Small conductance calci 46.7 25 0.00085 24.2 4.0 26 309-334 14-39 (43)
14 4ev6_A Magnesium transport pro 46.6 1.6E+02 0.0055 27.8 11.4 22 309-330 249-270 (339)
15 1rm1_A Tata-box binding protei 46.4 85 0.0029 29.1 8.9 70 87-174 71-146 (240)
16 1uii_A Geminin; human, DNA rep 45.7 40 0.0014 26.4 5.5 52 285-336 23-78 (83)
17 2pnv_A Small conductance calci 44.6 10 0.00035 26.2 1.7 26 304-329 16-41 (43)
18 3oiq_B DNA polymerase alpha ca 44.0 15 0.00052 24.0 2.4 24 224-248 5-28 (36)
19 3efg_A Protein SLYX homolog; x 34.9 41 0.0014 25.8 4.0 31 307-337 10-40 (78)
20 3ghg_A Fibrinogen alpha chain; 34.1 3.6E+02 0.012 27.9 11.8 98 228-346 54-154 (562)
21 1deq_A Fibrinogen (alpha chain 32.4 2.8E+02 0.0097 27.4 10.5 49 296-346 107-157 (390)
22 1rm1_A Tata-box binding protei 29.9 1E+02 0.0036 28.5 6.7 71 86-174 160-233 (240)
23 1wlq_A Geminin; coiled-coil; 2 27.9 99 0.0034 24.2 5.1 50 287-336 18-70 (83)
24 3hd7_A Vesicle-associated memb 24.5 2.5E+02 0.0084 21.7 7.3 34 302-335 24-57 (91)
25 2wvr_A Geminin; DNA replicatio 24.3 1.2E+02 0.0041 27.5 5.7 51 286-336 94-147 (209)
26 2oqq_A Transcription factor HY 23.9 1E+02 0.0035 21.0 3.9 30 306-335 12-41 (42)
27 1orj_A Flagellar protein FLIS; 23.2 1.3E+02 0.0045 25.0 5.5 43 294-336 80-123 (130)
No 1
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=73.85 E-value=16 Score=32.54 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=47.8
Q ss_pred EEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hHHH
Q 017028 87 VKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DHEV 164 (379)
Q Consensus 87 v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~e~ 164 (379)
|..+.++..+||+.++..+.. .+.|..+.+ ++.|..+ ..-.+-+|..|.||+=|.. +++.
T Consensus 106 Vas~~l~~~i~L~~la~~~~~~~YePe~fpg---li~R~~~---------------pk~~~lIF~SGKiviTGaks~~~~ 167 (182)
T 1ais_A 106 VFSGDIGREFNLDVVALTLPNCEYEPEQFPG---VIYRVKE---------------PKSVILLFSSGKIVCSGAKSEADA 167 (182)
T ss_dssp EEEEECSSCCCHHHHHHHSTTEECCTTTCSS---EEEEETT---------------TTEEEEECTTSEEEEEEESSHHHH
T ss_pred EEEEEcCCccCHHHHHhhCCCCEECCccCce---EEEEeCC---------------CcEEEEEecCCEEEEEecCCHHHH
Confidence 566789999999999987542 355655543 5566532 1235889999999999995 5666
Q ss_pred HHHHHHHHH
Q 017028 165 ENYLHIIRR 173 (379)
Q Consensus 165 ~~~L~~L~~ 173 (379)
..-++.+.+
T Consensus 168 ~~a~~~i~~ 176 (182)
T 1ais_A 168 WEAVRKLLR 176 (182)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555544
No 2
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=72.65 E-value=15 Score=32.87 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=46.1
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~e 163 (379)
-|..+.++..+||+.++..+.. .+.|..+. .++.|..+ ..-.+-||+.|.||+=|.. +++
T Consensus 109 IVas~~l~~~i~L~~la~~~~~~eYePe~fP---gliyR~~~---------------Pk~t~lIF~SGKiviTGaks~~~ 170 (188)
T 2z8u_A 109 MVATADLGIEPNLDDIALMVEGTEYEPEQFP---GLVYRLDD---------------PKVVVLIFGSGKVVITGLKSEED 170 (188)
T ss_dssp EEEEEECSSCCCHHHHHHHSTTEEECTTTSS---SEEEEEET---------------TEEEEEECTTSEEEEESCSCHHH
T ss_pred EEEEEecCCccCHHHHHhhCcCcEECCccCc---eEEEEeCC---------------CcEEEEEeCCCEEEEEecCCHHH
Confidence 3455689999999999987542 34566554 35556532 1236889999999999995 455
Q ss_pred HHHHHHHHH
Q 017028 164 VENYLHIIR 172 (379)
Q Consensus 164 ~~~~L~~L~ 172 (379)
...-++.+.
T Consensus 171 ~~~A~~~i~ 179 (188)
T 2z8u_A 171 AKRALKKIL 179 (188)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
No 3
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=65.48 E-value=23 Score=31.94 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=45.8
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~e 163 (379)
-|..+.++..+||+.++..+.. .+.|..+. .++.|..+ ..-.+-+|+.|.||+=|.. +++
T Consensus 109 IVas~~l~~~i~L~~la~~~~~~~YePe~fP---gliyR~~~---------------Pk~t~lIF~SGKiviTGaks~~~ 170 (198)
T 1mp9_A 109 IVASANLHVIVNLDKAAFLLENNMYEPEQFP---GLIYRMDE---------------PRVVLLIFSSGKMVITGAKREDE 170 (198)
T ss_dssp EEEEEECSSEECHHHHHHHSSSEECCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEEEESSHHH
T ss_pred EEEEeeCCCccCHHHHHhhcCCcEECCccCC---eEEEEeCC---------------CcEEEEEeCCCEEEEEecCCHHH
Confidence 4556689999999999987542 35566554 35566532 1235889999999999995 455
Q ss_pred HHHHHHHH
Q 017028 164 VENYLHII 171 (379)
Q Consensus 164 ~~~~L~~L 171 (379)
...-++.+
T Consensus 171 ~~~A~~~i 178 (198)
T 1mp9_A 171 VHKAVKKI 178 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444433
No 4
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=62.44 E-value=49 Score=30.31 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=41.6
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCChHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~~~e 163 (379)
-|....++..+||++++..+.. .+.|..+. .+++|..+ ..-.+-||+.|-+|+=|....+
T Consensus 48 IVas~~l~~~ldL~~ia~~~~n~eYePe~Fp---glv~Rl~~---------------Pk~t~LIF~SGKiV~TGAkS~e 108 (218)
T 3eik_A 48 VVATVNLSCKLDLKNIALRARNAEYNPKRFA---AVIMRIRE---------------PKTTALIFASGKMVITGAKSEK 108 (218)
T ss_dssp EEEEEECSSCCCHHHHHHHCTTEECCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEEEESSHH
T ss_pred EEEEEECCCccCHHHHHhhCCCcEEcCccCc---eEEEEecC---------------CcEEEEEECCCeEEEEecCCHH
Confidence 3556778999999999987642 34565553 35666542 1235889999999999985433
No 5
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=56.37 E-value=83 Score=28.15 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=26.9
Q ss_pred EEecCCCchhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 017028 206 IVLKNLDTDSVRVIGSVLGQ--------SMALDYFVSQVDCLVEEFAGINRAMEK 252 (379)
Q Consensus 206 I~L~~~d~~~~~aiS~aLAQ--------SVkL~~~E~~vd~~ie~~~~i~~~Lak 252 (379)
|+++..+......+-..+.+ .+.+..++..++.+..-++.+-+.+..
T Consensus 108 ITvr~~~~~~~~~v~~~l~~~~~~~~~~~ll~~lld~ivd~y~~~l~~l~~~id~ 162 (252)
T 3ck6_A 108 ISTRKIPSRAIMEIRQALAEHKGPKSLASLLNQIIEGLNGKIDLYLDTIEETLNE 162 (252)
T ss_dssp EEEESSCCHHHHHHHHHHHTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444444333322 355677777777777777766666543
No 6
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=56.27 E-value=35 Score=30.26 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=46.3
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e 163 (379)
-|....++..+||++++..+.. .+.|..+. .+++|..+ -...+-+|+.|-+|+=|. ++++
T Consensus 14 vVas~~l~~~ldL~~ia~~~~n~eY~P~~fp---gli~Rl~~---------------P~~t~lIF~SGKiv~TGakS~~~ 75 (182)
T 1ais_A 14 IVASVDLFAQLDLEKVLDLCPNSKYNPEEFP---GIICHLDD---------------PKVALLIFSSGKLVVTGAKSVQD 75 (182)
T ss_dssp EEEEEECCSCCCHHHHTTTSTTCBCCTTTCS---SEEEECSS---------------SCCEEEECTTSEEEEEEESSHHH
T ss_pred EEEEEEcCCeeCHHHHHhhCCCcEECCCccc---cEEEEcCC---------------CcEEEEEeCCCeEEEecCCCHHH
Confidence 4566789999999999976542 34555443 35555432 123688999999999998 5555
Q ss_pred HH----HHHHHHHHh
Q 017028 164 VE----NYLHIIRRH 174 (379)
Q Consensus 164 ~~----~~L~~L~~~ 174 (379)
.. .+.+.|++.
T Consensus 76 ~~~a~~~i~~~L~~l 90 (182)
T 1ais_A 76 IERAVAKLAQKLKSI 90 (182)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 43 344445543
No 7
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=55.02 E-value=60 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=45.9
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e 163 (379)
-|....++..+||++++..+.. .+.|..+. .++.|..+ -...+-+|+.|-+|+=|. ++++
T Consensus 10 iVas~~l~~~ldL~~ia~~~~n~eYePe~fp---gli~R~~~---------------Pk~~~lIF~SGKiv~TGaks~e~ 71 (180)
T 1ytb_A 10 IVATVTLGCRLDLKTVALHARNAEYNPKRFA---AVIMRIRE---------------PKTTALIFASGKMVVTGAKSEDD 71 (180)
T ss_dssp EEEEEECCSCCCHHHHHHHSSSEECCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEEEESSHHH
T ss_pred EEEEEEcCCccCHHHHHhhCCCCEECccccC---CEEEEeCC---------------CcEEEEEECCCeEEEEecCCHHH
Confidence 3455679999999999976542 34555544 35556532 123688999999999996 4555
Q ss_pred HHH----HHHHHHHh
Q 017028 164 VEN----YLHIIRRH 174 (379)
Q Consensus 164 ~~~----~L~~L~~~ 174 (379)
... +.+.|+++
T Consensus 72 ~~~a~~~i~~~L~~l 86 (180)
T 1ytb_A 72 SKLASRKYARIIQKI 86 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 433 44445554
No 8
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=54.36 E-value=64 Score=28.97 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=46.1
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~e 163 (379)
-|....++..+||+.|+..+.. .+.|..+- .+++|..+ -...+-+|+.|-+|+=|.. +++
T Consensus 18 vVas~~l~~~ldL~~la~~~~n~eY~P~~fp---gli~Rl~~---------------Pk~t~lIF~SGKiv~TGakS~e~ 79 (198)
T 1mp9_A 18 IVATVTLDQTLDLYAMERSVPNVEYDPDQFP---GLIFRLES---------------PKITSLIFKSGKMVVTGAKSTDE 79 (198)
T ss_dssp EEEEEECCSCCCHHHHHHHSTTCBCCTTTCS---SEEEEETT---------------TTEEEEECTTSEEEEECCSSHHH
T ss_pred EEEEEEcCCcccHHHHHhhCCCCEECCcccc---ceEEEcCC---------------CceEEEEeCCCeEEEeccCCHHH
Confidence 4556778999999999987652 34555543 35666532 1236889999999999965 444
Q ss_pred H----HHHHHHHHH
Q 017028 164 V----ENYLHIIRR 173 (379)
Q Consensus 164 ~----~~~L~~L~~ 173 (379)
. ..+.+.|++
T Consensus 80 a~~a~~~i~~~L~~ 93 (198)
T 1mp9_A 80 LIKAVKRIIKTLKK 93 (198)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3 334444554
No 9
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=51.18 E-value=68 Score=28.32 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=47.1
Q ss_pred eEEEEeccCccChhhHHHHhhc--CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT--HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DH 162 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~--~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~ 162 (379)
-|..+.+.-.+||..++..... .+.|..+. .++.|..+ ..-.+.+|..|.||+-|-. ++
T Consensus 100 Ivas~dl~~~I~Le~la~~~~~~~~YEPE~fP---GliyR~~~---------------pkv~~lIF~SGkivitGak~~~ 161 (180)
T 1ytb_A 100 IVGSCDVKFPIRLEGLAFSHGTFSSYEPELFP---GLIYRMVK---------------PKIVLLIFVSGKIVLTGAKQRE 161 (180)
T ss_dssp EEEEEECSSCBCHHHHHHHTTTTEECCTTTCS---SEEEECSS---------------SCCEEEECTTSEEEEEEESSHH
T ss_pred EEEEEECCCccCHHHHHHhcccceEECCccCC---cEEEEeCC---------------CcEEEEEecCCeEEEEecCCHH
Confidence 3455688999999999976532 34555554 24445432 1235889999999999996 45
Q ss_pred HHHHHHHHHHHh
Q 017028 163 EVENYLHIIRRH 174 (379)
Q Consensus 163 e~~~~L~~L~~~ 174 (379)
+....++.+.+.
T Consensus 162 ~~~~a~~~i~p~ 173 (180)
T 1ytb_A 162 EIYQAFEAIYPV 173 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=50.21 E-value=1.5e+02 Score=28.42 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 017028 310 AQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISV 358 (379)
Q Consensus 310 ~~R~~~Ln~KL~~i~e~~~~L~e~l~~~~s~rLEWIIIiLI~vEIvl~l 358 (379)
.++..-+.+.++.+.+.++.+.+...+.-+.++=-++=.|=++=+++..
T Consensus 267 ~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP 315 (363)
T 2iub_A 267 YDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMP 315 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554444444444444444444443343333333333333
No 11
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=49.66 E-value=69 Score=28.51 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=42.5
Q ss_pred eEEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hHH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DHE 163 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~e 163 (379)
-|....++..+||++|+..+.. .+.|..+. .+++|..+ . ...+-+|+.|-+|+=|.. +++
T Consensus 18 vVas~~l~~~ldL~~ia~~~~n~eY~P~~fp---gli~Rl~~--------------P-k~t~lIF~SGKiv~TGAkS~e~ 79 (188)
T 2z8u_A 18 VVVSTKIGDNIDLEEVAMILENAEYEPEQFP---GLVCRLSV--------------P-KVALLIFRSGKVNCTGAKSKEE 79 (188)
T ss_dssp EEEEEECCSSCCHHHHHHHSSCCC----------CEEEEETT--------------T-TEEEEECTTSEEEEEEESSHHH
T ss_pred EEEEEEeCCeeCHHHHHhhCCCCEECCCCcc---cEEEEcCC--------------C-cEEEEEeCCCeEEEecCCCHHH
Confidence 3445678999999999987652 33444433 35555532 1 246889999999999964 444
Q ss_pred H----HHHHHHHHHh
Q 017028 164 V----ENYLHIIRRH 174 (379)
Q Consensus 164 ~----~~~L~~L~~~ 174 (379)
. ..+.+.|++.
T Consensus 80 a~~a~~~~~~~L~~l 94 (188)
T 2z8u_A 80 AEIAIKKIIKELKDA 94 (188)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 3 3344555554
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=46.93 E-value=81 Score=28.84 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=47.2
Q ss_pred eEEEEeccCccChhhHHHHhhc--CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT--HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DH 162 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~--~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~ 162 (379)
-|..+.+.-.|||..|+..... .+.|..+. .++.|..+ ..-.+.||..|.||+=|.. ++
T Consensus 138 Ivas~dl~f~I~Le~la~~~~~~~~YEPE~fP---GliyR~~~---------------pkvt~lIF~SGKiviTGaks~~ 199 (218)
T 3eik_A 138 IVSSCDIKFSIRLEGLAYAHSNYCSYEPELFP---GLIYRMVK---------------PKIVLLIFVSGKIVLTGAKVRD 199 (218)
T ss_dssp EEEEEECSSCBCHHHHHHHSTTTEECCTTTSS---SEEEEETT---------------TTEEEEECTTSEEEEEEESSHH
T ss_pred EEEEEECCCcCcHHHHHHhccCCcEECCccCc---eEEEEcCC---------------CCEEEEEeCCCeEEEEecCCHH
Confidence 4667789999999999976432 34555553 24555431 1225789999999999987 45
Q ss_pred HHHHHHHHHHHh
Q 017028 163 EVENYLHIIRRH 174 (379)
Q Consensus 163 e~~~~L~~L~~~ 174 (379)
+...-++.+.+.
T Consensus 200 d~~~A~~~I~p~ 211 (218)
T 3eik_A 200 DIYQAFNNIYPV 211 (218)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 656555555543
No 13
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=46.66 E-value=25 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017028 309 VAQRFGNLDFKLKFVEHNIHFLQEVI 334 (379)
Q Consensus 309 I~~R~~~Ln~KL~~i~e~~~~L~e~l 334 (379)
+..|.+.|++|+.-+..-++.|.+.+
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444443
No 14
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=46.61 E-value=1.6e+02 Score=27.78 Aligned_cols=22 Identities=9% Similarity=-0.153 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 017028 309 VAQRFGNLDFKLKFVEHNIHFL 330 (379)
Q Consensus 309 I~~R~~~Ln~KL~~i~e~~~~L 330 (379)
+.+..+.+.++++-+.+....+
T Consensus 249 l~e~~~~~~e~l~~l~d~~~s~ 270 (339)
T 4ev6_A 249 LIDMSATYREVLTSMMDITLSL 270 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444333
No 15
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=46.40 E-value=85 Score=29.08 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=45.4
Q ss_pred EEEEeccCccChhhHHHHhhc-CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeC-ChHHH
Q 017028 87 VKAYFLSTSIDLKSMQAENLT-HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNI-EDHEV 164 (379)
Q Consensus 87 v~Ay~lae~idL~~L~~~l~~-~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~-~~~e~ 164 (379)
|....++..+||++++..+.. .+.|..+. .+++|..+ -.-.+-||+.|-+|+=|. ++++.
T Consensus 71 Vas~~l~~~ldL~~ia~~~~n~eYePe~Fp---gli~Rl~~---------------Pk~t~lIF~SGKiV~TGaks~e~a 132 (240)
T 1rm1_A 71 VATVTLGCRLDLKTVALHARNAEYNPKRFA---AVIMRIRE---------------PKTTALIFASGKMVVTGAKSEDDS 132 (240)
T ss_dssp EEEEECCSCCCHHHHHHHBTTEEECTTTCS---EEEEEEET---------------TEEEEEEETTSEEEEEEESSHHHH
T ss_pred EEEEEcCCccCHHHHHhhCCCcEEcCcccc---eEEEEeCC---------------CcEEEEEECCCeEEEEecCCHHHH
Confidence 455689999999999976542 34555543 25555532 123688999999999996 44544
Q ss_pred H----HHHHHHHHh
Q 017028 165 E----NYLHIIRRH 174 (379)
Q Consensus 165 ~----~~L~~L~~~ 174 (379)
. .+.+.|+++
T Consensus 133 ~~A~~~i~~~L~~l 146 (240)
T 1rm1_A 133 KLASRKYARIIQKI 146 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 3 344445554
No 16
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.71 E-value=40 Score=26.42 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=45.3
Q ss_pred cc-chhhhcc---chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017028 285 ER-SEIAWRD---AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 336 (379)
Q Consensus 285 D~-Pe~~We~---p~le~lY~~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~ 336 (379)
|. |+-||+. ..-..|++.+.+--++..++..|+..+..++...+.|+++..+
T Consensus 23 e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 23 ENPSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6899986 3566799999999999999999999999999999999988765
No 17
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=44.60 E-value=10 Score=26.19 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.8
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHH
Q 017028 304 REEYEVAQRFGNLDFKLKFVEHNIHF 329 (379)
Q Consensus 304 ~~~~EI~~R~~~Ln~KL~~i~e~~~~ 329 (379)
.+.=++.+|+..|+.||+.+++.++.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567889999999999999988764
No 18
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=44.03 E-value=15 Score=23.98 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 017028 224 GQSMALDYFVSQVDCLVEEFAGINR 248 (379)
Q Consensus 224 AQSVkL~~~E~~vd~~ie~~~~i~~ 248 (379)
+||+|+ +||..++.+++.++.-|.
T Consensus 5 s~~~K~-R~~nDvq~Ll~DVENSP~ 28 (36)
T 3oiq_B 5 LQSRKL-RYANDVQDLLDDVENSPV 28 (36)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHSCS
T ss_pred hHHHHH-HHHhhHHHHHHHhhcCch
Confidence 689999 899999999999887553
No 19
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.90 E-value=41 Score=25.82 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=27.7
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017028 307 YEVAQRFGNLDFKLKFVEHNIHFLQEVIQNR 337 (379)
Q Consensus 307 ~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~~ 337 (379)
-++.+|+.-|+.|+.+..++++-|++.+..+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Q 40 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADA 40 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999998764
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.06 E-value=3.6e+02 Score=27.89 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHhhhhccccccchhhhccchhHHHHHHHHHH
Q 017028 228 ALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSN-LADVILKVGLFERSEIAWRDAKYAQIYEYLREE 306 (379)
Q Consensus 228 kL~~~E~~vd~~ie~~~~i~~~Lak~G~i~lsrk~llk~iG~l~~~-r~~inl~~~lLD~Pe~~We~p~le~lY~~l~~~ 306 (379)
.|...|.-+.+.|++++.--+++.+ +++++.+.+-.+... |.++. ..-+.+..|.++.+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsK------nsKdseqy~k~~~E~Lr~rq~-------------q~~dNdNtynE~S~- 113 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQK------NNKDSHSLTTNIMEILRGDFS-------------SANNRDNTYNRVSE- 113 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH------HHHHHHHHHHHHHHTTSSHHH-------------HHHHHHHHHHHTTH-
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHh------hchhHHHHHHHHHHHHHHHHH-------------hhhccchhHHHHHH-
Confidence 3567788888888888876666655 566665544322211 01100 01123333433332
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhHHH
Q 017028 307 YEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRS--DLLEWCI 346 (379)
Q Consensus 307 ~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~~~s--~rLEWII 346 (379)
||..|+..|++|++--..++.+|+..|.++++ .|||.=|
T Consensus 114 -ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 -DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999988777888888888887654 5777644
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.39 E-value=2.8e+02 Score=27.41 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhHHH
Q 017028 296 YAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRS--DLLEWCI 346 (379)
Q Consensus 296 le~lY~~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~~~s--~rLEWII 346 (379)
.+..|.++.+. |..|+..|.+|++-=-..+..|+..+.++++ .|||.-|
T Consensus 107 ndn~~~e~s~e--Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 107 NDNTFKQINED--LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666554 5678888888887655578888888776554 5788655
No 22
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=29.90 E-value=1e+02 Score=28.48 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=45.2
Q ss_pred eEEEEeccCccChhhHHHHhhc--CCCCCCCCCCcceEEEecCCCcccccccccCCCCceeEEEEEcCCcEEEEeCC-hH
Q 017028 86 PVKAYFLSTSIDLKSMQAENLT--HVVPPSSRSTKYIALRYSDFPSEISALGVHGNVSHCRYMVVFHYGSAVLFNIE-DH 162 (379)
Q Consensus 86 ~v~Ay~lae~idL~~L~~~l~~--~~~p~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~vfiF~yGvVVfwn~~-~~ 162 (379)
-|..+.+.-.|||..++..+.. .+.|..+. .++.|..+ ..-.+.||..|.||+-|.. ++
T Consensus 160 IVas~dl~f~I~Le~la~~~~~~~~YEPE~fP---GLiyR~~~---------------pkvvllIF~SGKIviTGaK~~~ 221 (240)
T 1rm1_A 160 IVGSCDVKFPIRLEGLAFSHGTFSSYEPELFP---GLIYRMVK---------------PKIVLLIFVSGKIVLTGAKQRE 221 (240)
T ss_dssp EEEEEECSSCBCHHHHHHHTTTTEEEETTTEE---EEEEEETT---------------TTEEEEECTTSEEEEEEESSHH
T ss_pred EEEEEeCCCccCHHHHHHhchhccEECCccCC---ceEEEeCC---------------CcEEEEEecCCEEEEEecCCHH
Confidence 3455688999999999976422 23343332 23344321 1235889999999999995 56
Q ss_pred HHHHHHHHHHHh
Q 017028 163 EVENYLHIIRRH 174 (379)
Q Consensus 163 e~~~~L~~L~~~ 174 (379)
+...-++.+.+.
T Consensus 222 ~~~~Ai~~i~p~ 233 (240)
T 1rm1_A 222 EIYQAFEAIYPV 233 (240)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 23
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.90 E-value=99 Score=24.16 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=42.8
Q ss_pred chhhhcc---chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017028 287 SEIAWRD---AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 336 (379)
Q Consensus 287 Pe~~We~---p~le~lY~~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~ 336 (379)
|+-||.. ..-..|++.+.+--.+..+++.++..+..+++..+-|.++..+
T Consensus 18 se~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 18 SSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899986 3566799999999999999999999999999888888887765
No 24
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=24.52 E-value=2.5e+02 Score=21.74 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017028 302 YLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 335 (379)
Q Consensus 302 ~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~ 335 (379)
.+.+.++=.+|.+.|..|-+-+++....+.....
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~ 57 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQAGASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788888888888888888887776544
No 25
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.29 E-value=1.2e+02 Score=27.49 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=41.3
Q ss_pred cchhhhcc---chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017028 286 RSEIAWRD---AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 336 (379)
Q Consensus 286 ~Pe~~We~---p~le~lY~~l~~~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~ 336 (379)
-|+-||+. ..-..||+.|.+--+|..+++.++..+..+++..+-|+++..+
T Consensus 94 Pse~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 94 PSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999986 3566799999999999999999998888887777777766543
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.91 E-value=1e+02 Score=21.03 Aligned_cols=30 Identities=10% Similarity=0.317 Sum_probs=23.3
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017028 306 EYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 335 (379)
Q Consensus 306 ~~EI~~R~~~Ln~KL~~i~e~~~~L~e~l~ 335 (379)
.=++..|..-|++|+..++.-=.||+..+.
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 345677888888888888888888887765
No 27
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=23.17 E-value=1.3e+02 Score=24.98 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017028 294 AKYAQIYEYLREEY-EVAQRFGNLDFKLKFVEHNIHFLQEVIQN 336 (379)
Q Consensus 294 p~le~lY~~l~~~~-EI~~R~~~Ln~KL~~i~e~~~~L~e~l~~ 336 (379)
..|.+||+.+.+.+ .++.-.+.|++=..++.++.+...+....
T Consensus 80 ~nL~~LY~y~~~~LAn~~~d~~~l~ev~~ll~~lreaW~~i~~~ 123 (130)
T 1orj_A 80 KNLDTIYTIILNTLVKVDKTKEELQKILEILKDLREAWEEVKKK 123 (130)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999998888 11223566666666666666666665553
Done!