BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017030
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/344 (57%), Positives = 256/344 (74%), Gaps = 7/344 (2%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+N
Sbjct: 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 77
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 78 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE-- 133
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
+ + LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR+
Sbjct: 134 -HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 192
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +FP AN
Sbjct: 193 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 252
Query: 246 DFGSEIIP-ASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIY 303
DFGSE+IP A++ ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIY
Sbjct: 253 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIY 312
Query: 304 TSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRIN 347
T R LPP G I + I HSVVG+RS I+
Sbjct: 313 TQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCIS 356
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/320 (35%), Positives = 167/320 (52%), Gaps = 35/320 (10%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
AR A +L GG G+RL LT +RAKPAV GG R+ID +SN +NSGI ++ + TQY
Sbjct: 10 ARDAXAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYK 69
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ SL RHL R +++ + ++L A+Q E +W++GTADAV Q + E
Sbjct: 70 AHSLIRHLQRGWDFFRPER--NESFDILPASQRVSET--QWYEGTADAVYQNIDIIE--- 122
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
E +IL+GDH+Y+ DY +Q H SGAD+TI CL + A+ FG+ +N + +
Sbjct: 123 PYAPEYXVILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEI 182
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF--PT 243
+ F EKP G+ E +AS G+Y+F + L +R PT
Sbjct: 183 IDFIEKPADPP-----------GIPGNEGFA---LASXGIYVFHTKFLXEAVRRDAADPT 228
Query: 244 AN-DFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAHPP 291
++ DFG +IIP A+ F D YW D+GTI ++++AN+ LT P
Sbjct: 229 SSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVP 288
Query: 292 MFSFYDATKPIYTSRRNLPP 311
YD + PI+T PP
Sbjct: 289 DLDIYDKSWPIWTYAEITPP 308
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 59/285 (20%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+ + +IL GG G+RLYP+TK K +P+ G Y +I + I + I+T
Sbjct: 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCDITDIMIITG-- 78
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
H+ GD V L + Q G + Q A + Q L ED
Sbjct: 79 ----KEHM------------GD-VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFV 121
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+ ++++ GD+++ D +V+ +++ GA + + + DD FG+ I N
Sbjct: 122 GN--DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSV--DDPER--FGVANIQNR- 174
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+++ EKPK E K A G+YL+ ++ + ++ P+
Sbjct: 175 KIIEIEEKPK---------------------EPKSSYAVTGIYLYDSKV-FSYIKELKPS 212
Query: 244 ANDFGSEIIPASANEQFLK--AYLFND---YWEDIGTIRSFFEAN 283
A E+ N +LK +N+ +W D GT S AN
Sbjct: 213 AR---GELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRAN 254
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
+ ++L GG+GTRLYP+T+ +K +PI +I P+S + +GI + I++
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLP 62
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L R L G G FG V + + E +G ADA D +KV
Sbjct: 63 LYRDLL-----GDGSQFG-----VRFSYRVQEEP-----RGIADAFIVGKDFIGD--SKV 105
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 188
L+L + Y + + ++ I + D R FG+++ ++EGRV+S
Sbjct: 106 ---ALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRP--FGVVEFDSEGRVISI 160
Query: 189 SEKP 192
EKP
Sbjct: 161 EEKP 164
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 77/198 (38%), Gaps = 34/198 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL T + KP V IGG L + ++ GI I Y +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH-GIKDFIICCGYKGYVIK 63
Query: 71 RHLARAYNYGSGVTF--GDGCVEV-----------LAATQTPGEAGKRWFQGTADAVRQF 117
+ A + + S VTF + +EV L T G R + A+ V+
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGR-LKRVAEYVKD- 121
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC-LPMDDSRASDFGL 176
E L GD + +D + H+ G T++ P FG
Sbjct: 122 -----------DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP-----PGRFGA 165
Query: 177 MKINNEGRVLSFSEKPKG 194
+ I G+V SF EKPKG
Sbjct: 166 LDI-QAGQVRSFQEKPKG 182
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I+ T ++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G + + Q + D + Q + E +
Sbjct: 64 QQLLGDGSNWGLDLQYA--------------------VQPSPDGLAQAFLIGESFIGNDL 103
Query: 130 EDVLILSGDHLYRMDYMDFV--QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
L+L + Y D+ + + + RQ+GA + + +D R +G+++ + G+ +S
Sbjct: 104 -SALVLGDNLYYGHDFHELLGSASQRQTGASV-FAYHVLDPER---YGVVEFDQGGKAIS 158
Query: 188 FSEKP 192
EKP
Sbjct: 159 LEEKP 163
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I+ T ++
Sbjct: 14 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G + + Q + D + Q + E +
Sbjct: 73 QQLLGDGSNWGLDLQYA--------------------VQPSPDGLAQAFLIGESFIGNDL 112
Query: 130 EDVLILSGDHLYRMDYMDFV--QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
L+L + Y D+ + + + RQ+GA + + +D R +G+++ + G+ +S
Sbjct: 113 -SALVLGDNLYYGHDFHELLGSASQRQTGASV-FAYHVLDPER---YGVVEFDQGGKAIS 167
Query: 188 FSEKP 192
EKP
Sbjct: 168 LEEKP 172
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I+ T ++
Sbjct: 15 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G + + Q + D + Q + E +
Sbjct: 74 QQLLGDGSNWGLDLQYA--------------------VQPSPDGLAQAFLIGESFIGNDL 113
Query: 130 EDVLILSGDHLYRMDYMDFV--QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
L+L + Y D+ + + + RQ+GA + + +D R +G+++ + G+ +S
Sbjct: 114 -SALVLGDNLYYGHDFHELLGSASQRQTGASV-FAYHVLDPER---YGVVEFDQGGKAIS 168
Query: 188 FSEKP 192
EKP
Sbjct: 169 LEEKP 173
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFG-DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
+ + L +G + + D + LA GE F G D
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEE----FIGHDDC----------- 105
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
L+L + Y D ++ +++SGA T+ ++D +G+++ + +
Sbjct: 106 -------ALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQK 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAVSLEEKP 164
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 29/185 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ I P+S +GI ++ I+ T ++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPVYDK-PXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G + + Q + D + Q + E +
Sbjct: 64 QQLLGDGSNWGLDLQYA--------------------VQPSPDGLAQAFLIGESFIGNDL 103
Query: 130 EDVLILSGDHLYRMDYMDFV--QNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
L+L + Y D+ + + + RQ+GA + + +D R +G+++ + G+ +S
Sbjct: 104 -SALVLGDNLYYGHDFHELLGSASQRQTGASV-FAYHVLDPER---YGVVEFDQGGKAIS 158
Query: 188 FSEKP 192
EKP
Sbjct: 159 LEEKP 163
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-------- 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 63 --------------QYNSASLNRHLARAYNYGSGVTFGDGCVEVLA 94
QY LA+A+ G GD C VL
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLG 110
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-------- 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 63 --------------QYNSASLNRHLARAYNYGSGVTFGDGCVEVLA 94
QY LA+A+ G GD C VL
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLG 110
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-------- 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 63 --------------QYNSASLNRHLARAYNYGSGVTFGDGCVEVLA 94
QY LA+A+ G GD C VL
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLG 110
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D + Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYK--------------------VQPSPDGLAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ + +
Sbjct: 101 GH--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQK 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAVSLEEKP 164
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I+ T ++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L +G + + Q + D + Q + E+
Sbjct: 65 QQLLGDGSQWGLNLQYK--------------------VQPSPDGLAQAFIIGEEFIGA-- 102
Query: 130 EDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 186
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ + G +
Sbjct: 103 DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDKNGTAI 158
Query: 187 SFSEKP 192
S EKP
Sbjct: 159 SLEEKP 164
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D + Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYK--------------------VQPSPDGLAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ +
Sbjct: 101 GH--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQA 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAVSLEEKP 164
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D + Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQY--------------------KVQPSPDGLAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ +
Sbjct: 101 GH--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQA 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAVSLEEKP 164
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYK--------------------VQPSPDGTAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ +
Sbjct: 101 GH--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQA 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAVSLEEKP 164
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 29/186 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRL+P+T+ +K +PI I P+S +GI ++ I+T
Sbjct: 6 GIILAGGSGTRLHPITRGVSKQLLPIYDK-PXIYYPLSVLXLAGIREILIITTPEDKGYF 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG +++ A Q + D + Q + E N E
Sbjct: 65 QRL-----LGDGSEFG---IQLEYAEQP-----------SPDGLAQAFIIGETFLNG--E 103
Query: 131 DVLILSGDHLYRMDYMDFVQNH---RQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
++ GD+++ H R GA + D R FG+++ ++ R +S
Sbjct: 104 PSCLVLGDNIFFGQGFSPKLRHVAARTEGATV-FGYQVXDPER---FGVVEFDDNFRAIS 159
Query: 188 FSEKPK 193
EKPK
Sbjct: 160 LEEKPK 165
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGI 55
M + + AVI G GTR+ P TK K +P L+D P+ + CI +GI
Sbjct: 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLP------LVDKPLIQYVVNECIAAGI 54
Query: 56 NKVYILTQYNSASLNRHLARAYN 78
++ ++T + S+ H ++
Sbjct: 55 TEIVLVTHSSKNSIENHFDTSFE 77
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQ 84
Query: 69 LNRHLARAYNYGSGVTFGD 87
+ + YG + F D
Sbjct: 85 FDYLKEK---YGVRLVFND 100
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQ 84
Query: 69 LNRHLARAYNYGSGVTFGD 87
+ + YG + F D
Sbjct: 85 FDYLKEK---YGVRLVFND 100
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 42/186 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A IL G+G RL P+T R K VPI + LI+ + GI + ++ +S N
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPI-LSKPLIEYQIEYLRKCGIRDITVIV----SSKN 57
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ F E+ TQ K +GT A+ F D
Sbjct: 58 KEY-----------FEKKLKEISIVTQ------KDDIKGTGAAI--LSAKFND------- 91
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITI---SCLPMDDSRASDFGLMKINNEGRVLS 187
+ LI+ GD F N ++ IT+ + + + S D+G++ ++N+ +
Sbjct: 92 EALIIYGDL--------FFSNEKEICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSK 143
Query: 188 FSEKPK 193
EKP+
Sbjct: 144 IIEKPE 149
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AV G GTR P TK K +P+ LI + + +GI ++ +T ++L
Sbjct: 17 AVFPVAGLGTRFLPATKAMPKEMLPV-VDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQ 97
H AY + + ++VL T+
Sbjct: 76 DHFDIAYELEATMAARGKSLDVLDGTR 102
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 106/283 (37%), Gaps = 36/283 (12%)
Query: 15 GGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLA 74
G GTR P+TK K +PI LI + + +G + I+T N SL +
Sbjct: 9 AAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFD 67
Query: 75 RAYNYGSGVTFGDGCVEVLAATQTPGE------AGKRWFQGTADAVRQFHWLF-EDPRNK 127
+Y + G L + + E ++ +G A+ L +P
Sbjct: 68 TSYEIEHQIQ-GTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAV 126
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN--NEG-- 183
++ D L +S DH + M + Q + I + +++ S +G+++ EG
Sbjct: 127 ILADDLCISHDHPSVLKQMTSLYQKYQCSI-VAIEEVALEE--VSKYGVIRGEWLEEGVY 183
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ EKP +D + +A +G Y+ +I L +
Sbjct: 184 EIKDMVEKPNQEDAPSN-------------------LAVIGRYILTPDIFEILSETKPGK 224
Query: 244 ANDFG-SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLA 285
N+ ++ + A + + AY F D G++ + EA+ A
Sbjct: 225 NNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNA 267
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 104/260 (40%), Gaps = 52/260 (20%)
Query: 11 AVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASL 69
A+++ GG G RL+PL+++ R KP +P+ L++ + + +L A
Sbjct: 5 ALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLL-----AVR 59
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
A A Y G+ +E L T G G A+A+++
Sbjct: 60 RDQEAVARPYADGIRL---LLEPL-GRDTAGAV----LLGVAEALKEG-----------A 100
Query: 130 EDVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSR-ASDFGLMKIN-NEG-- 183
E +L+L DH D Y + + ++ + + L + +R +++G +++ EG
Sbjct: 101 ERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAW 160
Query: 184 -RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEE---KPYIASMGVYLFKKEILLNLLRW 239
R F EKP S EA E K Y+ + GV+ F + L R
Sbjct: 161 YRGEGFVEKP-----------------SYAEALEYIRKGYVWNGGVFAFAPATMAELFRR 203
Query: 240 RFPTANDFGSEIIPASANEQ 259
P+ ++ ++ ++ E+
Sbjct: 204 HLPSHHEALERLLAGASLEE 223
>pdb|3RSB|A Chain A, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
pdb|3RSB|B Chain B, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
pdb|3RSB|C Chain C, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
pdb|3RSB|D Chain D, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
Length = 196
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+I GG GTR KP + + G LID +S + S +N ++I T N+
Sbjct: 3 ALIXAGGKGTR----XGGVEKPLIKLCGRC-LIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 71 RHLARAY-NYGSGV---TFGDGCVEVL 93
++ AY +Y + V T G G +E L
Sbjct: 58 EYINSAYKDYKNIVVIDTSGKGYIEDL 84
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 175
H+ E+ + KV+ DV+ + G H R D F+ HR+ + L + S +SD G
Sbjct: 20 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSD-G 78
Query: 176 LMKINNEGRVLSFSEK 191
++ +N + +S E+
Sbjct: 79 VLTVNGPRKQVSGPER 94
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 175
H+ E+ + KV+ DV+ + G H R D F+ HR+ + L + S +SD G
Sbjct: 16 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSD-G 74
Query: 176 LMKINNEGRVLSFSEK 191
++ +N + +S E+
Sbjct: 75 VLTVNGPRKQVSGPER 90
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-----GINKVYILTQYNS 66
V+ G GTR P TK K +P+ +D P I + G ++ I+T N
Sbjct: 16 VVPAAGLGTRFLPATKTVPKELLPV------VDTPGIELIAAEAAELGATRLAIITAPNK 69
Query: 67 ASLNRHLARA 76
A + H R+
Sbjct: 70 AGVLAHFERS 79
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 175
H+ E+ + KV+ DV+ + G H R D F+ HR+ + L + S +SD G
Sbjct: 83 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-G 141
Query: 176 LMKINNEGRVLSFSEK 191
++ +N + +S E+
Sbjct: 142 VLTVNGPRKQVSGPER 157
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 175
H+ E+ + KV+ DV+ + G H R D F+ HR+ + L + S +SD G
Sbjct: 20 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-G 78
Query: 176 LMKINNEGRVLSFSEK 191
++ +N + +S E+
Sbjct: 79 VLTVNGPRKQVSGPER 94
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 118 HWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFG 175
H+ E+ + KV+ DV+ + G H R D F+ HR+ + L + S +SD G
Sbjct: 17 HFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-G 75
Query: 176 LMKINNEGRVLSFSEK 191
++ +N + +S E+
Sbjct: 76 VLTVNGPRKQVSGPER 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,899,379
Number of Sequences: 62578
Number of extensions: 441080
Number of successful extensions: 963
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 41
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)