Query 017030
Match_columns 378
No_of_seqs 203 out of 2535
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 4E-65 8.7E-70 460.8 33.4 341 6-373 3-347 (393)
2 PLN02241 glucose-1-phosphate a 100.0 8.7E-59 1.9E-63 447.7 37.9 368 6-375 1-388 (436)
3 PRK02862 glgC glucose-1-phosph 100.0 9.6E-58 2.1E-62 439.2 37.2 345 6-359 1-346 (429)
4 KOG1322 GDP-mannose pyrophosph 100.0 1.3E-57 2.8E-62 397.1 25.0 321 7-372 8-352 (371)
5 PRK00844 glgC glucose-1-phosph 100.0 2.4E-56 5.1E-61 427.7 35.2 344 5-371 2-382 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 4.3E-56 9.3E-61 423.8 35.5 336 6-374 1-345 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 3.2E-55 6.9E-60 421.3 35.4 343 7-370 14-393 (425)
8 TIGR02092 glgD glucose-1-phosp 100.0 2.1E-53 4.6E-58 403.6 35.4 333 7-376 1-343 (369)
9 COG1208 GCD1 Nucleoside-diphos 100.0 4.2E-54 9.2E-59 402.3 28.6 311 8-365 1-324 (358)
10 TIGR02091 glgC glucose-1-phosp 100.0 3.2E-51 7E-56 387.8 36.3 342 11-374 1-347 (361)
11 TIGR01208 rmlA_long glucose-1- 100.0 2.7E-47 5.8E-52 359.7 30.9 314 10-371 1-339 (353)
12 KOG1460 GDP-mannose pyrophosph 100.0 5.8E-48 1.3E-52 331.3 18.2 330 7-376 1-393 (407)
13 KOG1462 Translation initiation 100.0 8.8E-45 1.9E-49 322.7 21.0 342 5-369 6-400 (433)
14 COG1209 RfbA dTDP-glucose pyro 100.0 1.2E-43 2.5E-48 304.6 18.8 233 9-288 1-237 (286)
15 KOG1461 Translation initiation 100.0 8.5E-43 1.8E-47 327.3 24.0 345 6-374 22-405 (673)
16 PRK14355 glmU bifunctional N-a 100.0 6.4E-42 1.4E-46 333.8 26.9 318 6-370 1-336 (459)
17 COG1207 GlmU N-acetylglucosami 100.0 2.7E-41 5.8E-46 305.6 24.6 316 7-369 1-353 (460)
18 PRK14358 glmU bifunctional N-a 100.0 2.9E-40 6.2E-45 322.5 25.3 322 1-372 1-358 (481)
19 PRK14352 glmU bifunctional N-a 100.0 7.4E-40 1.6E-44 320.8 27.8 314 6-364 2-350 (482)
20 TIGR01105 galF UTP-glucose-1-p 100.0 3.6E-40 7.8E-45 300.5 23.5 244 6-287 1-277 (297)
21 PRK10122 GalU regulator GalF; 100.0 1.6E-39 3.5E-44 297.1 23.1 246 6-289 1-280 (297)
22 PRK09451 glmU bifunctional N-a 100.0 2.3E-39 4.9E-44 315.8 23.9 317 6-374 3-355 (456)
23 PRK14356 glmU bifunctional N-a 100.0 7.5E-39 1.6E-43 312.5 26.2 319 8-374 5-359 (456)
24 TIGR01173 glmU UDP-N-acetylglu 100.0 6.1E-39 1.3E-43 313.1 25.6 310 9-369 1-346 (451)
25 PF00483 NTP_transferase: Nucl 100.0 3.7E-39 8.1E-44 289.9 22.0 239 10-288 1-247 (248)
26 cd06425 M1P_guanylylT_B_like_N 100.0 9.7E-39 2.1E-43 284.3 23.1 232 9-287 1-233 (233)
27 cd06428 M1P_guanylylT_A_like_N 100.0 9.2E-39 2E-43 288.5 22.6 235 11-286 1-257 (257)
28 PRK14359 glmU bifunctional N-a 100.0 4.9E-38 1.1E-42 304.8 27.7 304 7-362 1-323 (430)
29 PRK14353 glmU bifunctional N-a 100.0 2.1E-37 4.5E-42 301.5 27.7 321 5-373 2-357 (446)
30 PRK15480 glucose-1-phosphate t 100.0 1.4E-37 3E-42 282.8 24.2 235 6-287 1-241 (292)
31 PRK14354 glmU bifunctional N-a 100.0 2.3E-37 4.9E-42 302.4 27.3 319 7-374 1-354 (458)
32 PRK14357 glmU bifunctional N-a 100.0 4.7E-37 1E-41 299.2 28.0 308 9-372 1-342 (448)
33 cd02538 G1P_TT_short G1P_TT_sh 100.0 3.8E-37 8.3E-42 275.2 22.4 231 9-286 1-237 (240)
34 TIGR01207 rmlA glucose-1-phosp 100.0 3.3E-37 7.2E-42 280.1 21.8 231 10-287 1-237 (286)
35 TIGR02623 G1P_cyt_trans glucos 100.0 7.8E-37 1.7E-41 274.7 23.1 234 10-290 1-248 (254)
36 PRK13389 UTP--glucose-1-phosph 100.0 4.3E-36 9.3E-41 274.9 23.8 245 6-287 6-280 (302)
37 cd02541 UGPase_prokaryotic Pro 100.0 5.4E-36 1.2E-40 272.1 22.8 242 9-287 1-265 (267)
38 PRK14360 glmU bifunctional N-a 100.0 1.1E-35 2.4E-40 289.8 26.5 312 9-370 2-347 (450)
39 cd02524 G1P_cytidylyltransfera 100.0 9.5E-36 2.1E-40 268.1 22.9 243 11-289 1-248 (253)
40 TIGR01099 galU UTP-glucose-1-p 100.0 1.4E-36 3E-41 274.9 17.5 240 9-282 1-260 (260)
41 cd06422 NTP_transferase_like_1 100.0 1.2E-35 2.6E-40 262.3 19.2 219 10-282 1-221 (221)
42 cd04189 G1P_TT_long G1P_TT_lon 100.0 7.8E-35 1.7E-39 259.8 23.0 232 9-288 1-235 (236)
43 cd06915 NTP_transferase_WcbM_l 100.0 4.9E-34 1.1E-38 252.4 20.3 222 11-282 1-222 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 2E-33 4.4E-38 247.4 21.2 217 11-274 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 4E-33 8.6E-38 246.1 21.7 219 11-283 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 2.1E-33 4.6E-38 241.4 14.8 249 7-290 3-273 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 5.2E-32 1.1E-36 238.1 17.5 205 9-233 1-217 (217)
48 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 1.4E-30 3.1E-35 231.5 18.9 222 11-279 1-230 (231)
49 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.7E-30 6E-35 224.4 18.8 199 11-273 1-200 (200)
50 cd02523 PC_cytidylyltransferas 100.0 1.3E-30 2.9E-35 231.4 16.8 222 11-283 1-229 (229)
51 cd02509 GDP-M1P_Guanylyltransf 100.0 5.4E-29 1.2E-33 225.8 15.4 233 9-278 1-273 (274)
52 cd02507 eIF-2B_gamma_N_like Th 100.0 2.6E-28 5.7E-33 214.2 15.0 203 9-233 1-216 (216)
53 cd04198 eIF-2B_gamma_N The N-t 100.0 8E-28 1.7E-32 210.9 13.9 201 9-233 1-214 (214)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 1E-26 2.2E-31 206.5 18.6 221 11-279 1-229 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 7E-26 1.5E-30 219.5 20.1 241 9-284 1-282 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 7.8E-25 1.7E-29 196.4 19.0 235 7-286 1-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 2.6E-24 5.7E-29 192.2 18.5 227 8-284 1-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 5.2E-24 1.1E-28 180.4 14.8 223 6-288 1-230 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 1.2E-22 2.5E-27 181.5 18.2 225 8-285 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.9 7.7E-23 1.7E-27 196.3 16.3 244 7-284 4-291 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.9 2.2E-22 4.8E-27 177.5 17.2 244 8-286 1-285 (333)
62 COG4750 LicC CTP:phosphocholin 99.9 7E-21 1.5E-25 154.5 11.8 220 9-288 1-227 (231)
63 PLN02917 CMP-KDO synthetase 99.8 8.1E-19 1.7E-23 160.0 20.0 235 7-288 46-289 (293)
64 TIGR00453 ispD 2-C-methyl-D-er 99.7 2E-16 4.3E-21 139.2 15.1 211 10-285 1-216 (217)
65 PRK00155 ispD 2-C-methyl-D-ery 99.7 2.7E-16 5.9E-21 139.2 15.4 219 6-288 1-224 (227)
66 TIGR00466 kdsB 3-deoxy-D-manno 99.7 1.3E-15 2.7E-20 135.5 17.7 228 11-279 2-237 (238)
67 TIGR00454 conserved hypothetic 99.7 6.5E-16 1.4E-20 131.4 10.7 125 9-165 1-127 (183)
68 cd02516 CDP-ME_synthetase CDP- 99.7 1.7E-15 3.6E-20 133.4 13.7 211 10-281 2-217 (218)
69 PF12804 NTP_transf_3: MobA-li 99.6 9.7E-16 2.1E-20 128.1 10.0 121 11-164 1-123 (160)
70 PRK09382 ispDF bifunctional 2- 99.6 6.3E-15 1.4E-19 138.4 16.4 208 6-288 3-214 (378)
71 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.5E-14 3.2E-19 127.8 16.8 217 8-285 1-222 (223)
72 PRK13385 2-C-methyl-D-erythrit 99.6 1.2E-14 2.6E-19 128.9 14.9 219 8-288 2-225 (230)
73 TIGR03310 matur_ygfJ molybdenu 99.6 1.3E-14 2.9E-19 124.6 13.0 119 11-159 2-122 (188)
74 COG2266 GTP:adenosylcobinamide 99.6 5.5E-14 1.2E-18 114.0 13.8 110 9-153 1-112 (177)
75 PRK00317 mobA molybdopterin-gu 99.6 1.1E-13 2.4E-18 119.4 14.4 113 6-153 1-115 (193)
76 cd04182 GT_2_like_f GT_2_like_ 99.5 5.7E-14 1.2E-18 120.3 10.0 120 9-158 1-122 (186)
77 PLN02728 2-C-methyl-D-erythrit 99.5 5.1E-13 1.1E-17 119.1 14.3 218 6-288 22-246 (252)
78 COG1212 KdsB CMP-2-keto-3-deox 99.5 2.1E-12 4.6E-17 108.6 14.6 234 7-287 2-243 (247)
79 TIGR03584 PseF pseudaminic aci 99.4 7.6E-12 1.7E-16 109.9 17.9 215 11-286 2-220 (222)
80 PRK02726 molybdopterin-guanine 99.4 1.7E-12 3.7E-17 112.4 13.6 113 6-153 5-119 (200)
81 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 4.1E-13 9E-18 118.0 7.8 115 249-369 31-175 (231)
82 PRK00560 molybdopterin-guanine 99.4 3.1E-12 6.8E-17 110.4 12.4 109 1-148 1-112 (196)
83 cd02503 MobA MobA catalyzes th 99.4 8.9E-13 1.9E-17 112.5 8.8 107 9-152 1-109 (181)
84 PRK14489 putative bifunctional 99.4 8.7E-12 1.9E-16 117.7 14.8 120 6-158 3-124 (366)
85 PF01128 IspD: 2-C-methyl-D-er 99.4 3.5E-11 7.5E-16 104.7 16.4 213 9-286 1-219 (221)
86 COG2068 Uncharacterized MobA-r 99.4 1.2E-11 2.6E-16 103.5 12.8 121 6-155 3-125 (199)
87 COG1211 IspD 4-diphosphocytidy 99.3 8.4E-11 1.8E-15 101.8 17.7 220 6-287 2-227 (230)
88 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 3.1E-12 6.7E-17 93.8 7.5 69 308-376 2-72 (81)
89 TIGR03202 pucB xanthine dehydr 99.3 1.2E-11 2.6E-16 106.4 10.4 125 9-158 1-127 (190)
90 TIGR02665 molyb_mobA molybdopt 99.3 7.7E-12 1.7E-16 107.2 9.2 117 9-158 1-119 (186)
91 cd04651 LbH_G1P_AT_C Glucose-1 99.3 1.2E-11 2.6E-16 95.2 8.4 76 296-372 4-80 (104)
92 cd03356 LbH_G1P_AT_C_like Left 99.3 1.5E-11 3.2E-16 89.8 7.8 68 308-375 2-72 (79)
93 cd04651 LbH_G1P_AT_C Glucose-1 99.3 1.8E-11 3.9E-16 94.2 8.0 65 311-375 1-66 (104)
94 cd02518 GT2_SpsF SpsF is a gly 99.3 1.1E-10 2.5E-15 103.7 14.3 115 11-160 2-121 (233)
95 PRK14490 putative bifunctional 99.3 1E-10 2.2E-15 110.8 14.4 111 4-150 170-282 (369)
96 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 7.4E-11 1.6E-15 86.5 7.4 71 295-366 7-79 (81)
97 cd05824 LbH_M1P_guanylylT_C Ma 99.2 9.6E-11 2.1E-15 85.7 7.7 67 309-375 3-73 (80)
98 KOG1462 Translation initiation 99.2 1.8E-11 4E-16 110.5 4.3 69 305-373 351-421 (433)
99 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.1E-10 2.5E-15 85.0 7.6 67 308-374 2-71 (79)
100 cd04193 UDPGlcNAc_PPase UDPGlc 99.1 6.6E-10 1.4E-14 102.5 13.6 218 6-239 13-257 (323)
101 COG0746 MobA Molybdopterin-gua 99.1 1.2E-10 2.6E-15 99.3 7.4 113 6-156 2-116 (192)
102 cd03356 LbH_G1P_AT_C_like Left 99.1 3E-10 6.5E-15 82.8 7.6 69 296-365 8-79 (79)
103 cd04180 UGPase_euk_like Eukary 99.1 2.7E-09 5.8E-14 96.1 15.3 217 10-238 2-241 (266)
104 COG0448 GlgC ADP-glucose pyrop 99.1 2.4E-10 5.2E-15 104.9 7.2 69 303-372 294-363 (393)
105 KOG1461 Translation initiation 99.1 1.5E-10 3.2E-15 110.8 5.9 57 320-376 332-389 (673)
106 PRK00725 glgC glucose-1-phosph 99.1 2.6E-10 5.7E-15 110.2 7.0 59 317-375 323-381 (425)
107 PTZ00339 UDP-N-acetylglucosami 99.0 5.9E-09 1.3E-13 100.4 15.0 217 6-238 104-351 (482)
108 PRK00844 glgC glucose-1-phosph 99.0 5.8E-10 1.3E-14 107.3 7.6 59 318-376 312-370 (407)
109 cd05824 LbH_M1P_guanylylT_C Ma 99.0 1.5E-09 3.2E-14 79.4 7.4 71 295-365 7-80 (80)
110 TIGR02092 glgD glucose-1-phosp 99.0 9.8E-10 2.1E-14 104.5 7.3 80 295-376 280-360 (369)
111 PRK05293 glgC glucose-1-phosph 99.0 1.7E-09 3.7E-14 103.3 8.4 75 295-371 284-359 (380)
112 cd05636 LbH_G1P_TT_C_like Puta 98.9 2.5E-09 5.5E-14 89.5 7.8 72 299-370 29-103 (163)
113 PRK14500 putative bifunctional 98.9 2.1E-09 4.6E-14 100.0 7.5 110 7-152 159-270 (346)
114 cd05636 LbH_G1P_TT_C_like Puta 98.9 4.9E-09 1.1E-13 87.7 8.0 79 297-375 9-91 (163)
115 PRK02862 glgC glucose-1-phosph 98.9 3.8E-09 8.3E-14 102.3 7.4 68 304-371 307-394 (429)
116 TIGR02091 glgC glucose-1-phosp 98.9 6.6E-09 1.4E-13 98.6 8.5 75 295-370 285-360 (361)
117 cd04650 LbH_FBP Ferripyochelin 98.8 1.3E-08 2.7E-13 84.2 8.2 79 293-371 6-95 (154)
118 cd04745 LbH_paaY_like paaY-lik 98.8 1.2E-08 2.7E-13 84.5 8.0 77 295-371 8-95 (155)
119 TIGR02287 PaaY phenylacetic ac 98.8 1.3E-08 2.8E-13 86.9 7.7 77 294-370 15-102 (192)
120 COG1083 NeuA CMP-N-acetylneura 98.8 1.1E-07 2.5E-12 79.8 12.6 220 6-288 1-224 (228)
121 PLN02474 UTP--glucose-1-phosph 98.8 5.6E-07 1.2E-11 86.2 18.8 335 7-360 78-466 (469)
122 cd03353 LbH_GlmU_C N-acetyl-gl 98.8 2.3E-08 5.1E-13 86.1 8.5 79 295-373 23-104 (193)
123 cd05787 LbH_eIF2B_epsilon eIF- 98.8 2.5E-08 5.5E-13 72.5 7.2 69 296-365 8-79 (79)
124 cd05635 LbH_unknown Uncharacte 98.7 6.4E-08 1.4E-12 73.8 7.5 69 300-369 24-94 (101)
125 cd04645 LbH_gamma_CA_like Gamm 98.7 7.5E-08 1.6E-12 79.6 8.0 76 295-370 7-93 (153)
126 TIGR01853 lipid_A_lpxD UDP-3-O 98.7 1.1E-07 2.3E-12 88.3 9.3 101 269-369 66-172 (324)
127 PRK13627 carnitine operon prot 98.6 8.2E-08 1.8E-12 82.3 7.6 77 295-371 18-105 (196)
128 PLN02296 carbonate dehydratase 98.6 8.9E-08 1.9E-12 85.9 7.7 77 294-370 59-152 (269)
129 PLN02472 uncharacterized prote 98.6 8.5E-08 1.8E-12 84.9 7.3 75 295-369 67-158 (246)
130 cd03353 LbH_GlmU_C N-acetyl-gl 98.6 1.1E-07 2.4E-12 81.9 7.6 68 303-370 13-83 (193)
131 PF07959 Fucokinase: L-fucokin 98.6 1.5E-07 3.2E-12 90.2 9.1 207 130-360 54-324 (414)
132 TIGR03308 phn_thr-fam phosphon 98.6 1.1E-07 2.3E-12 82.3 7.3 64 308-371 5-70 (204)
133 PRK14353 glmU bifunctional N-a 98.6 1.1E-07 2.4E-12 92.9 7.9 64 306-369 304-370 (446)
134 cd04646 LbH_Dynactin_6 Dynacti 98.6 2.6E-07 5.7E-12 77.2 8.4 47 324-370 69-117 (164)
135 cd00710 LbH_gamma_CA Gamma car 98.6 2.9E-07 6.2E-12 77.3 8.2 79 295-373 10-101 (167)
136 PLN02241 glucose-1-phosphate a 98.5 1.6E-07 3.5E-12 91.2 7.6 65 306-370 316-400 (436)
137 TIGR01173 glmU UDP-N-acetylglu 98.5 1.3E-07 2.7E-12 92.6 6.9 49 322-370 280-329 (451)
138 cd03358 LbH_WxcM_N_like WcxM-l 98.5 2.8E-07 6E-12 72.7 7.4 78 296-373 7-104 (119)
139 COG1044 LpxD UDP-3-O-[3-hydrox 98.5 4E-07 8.8E-12 82.2 8.8 97 273-369 78-180 (338)
140 PRK14356 glmU bifunctional N-a 98.5 1.5E-07 3.3E-12 92.2 6.6 69 306-374 305-376 (456)
141 TIGR03308 phn_thr-fam phosphon 98.5 4.6E-07 9.9E-12 78.4 8.3 58 295-353 10-69 (204)
142 PRK13412 fkp bifunctional fuco 98.5 2.6E-06 5.6E-11 88.2 15.1 197 131-356 154-373 (974)
143 TIGR01208 rmlA_long glucose-1- 98.5 2.1E-07 4.6E-12 88.0 6.8 65 302-366 245-316 (353)
144 TIGR03570 NeuD_NnaD sugar O-ac 98.5 9E-07 2E-11 76.5 10.0 35 337-371 153-188 (201)
145 cd04745 LbH_paaY_like paaY-lik 98.5 4.4E-07 9.6E-12 75.2 7.6 66 306-371 40-113 (155)
146 PRK05289 UDP-N-acetylglucosami 98.5 3.6E-07 7.9E-12 82.4 7.2 50 321-370 50-121 (262)
147 TIGR02287 PaaY phenylacetic ac 98.5 5.3E-07 1.1E-11 77.1 7.7 65 308-372 50-122 (192)
148 cd04645 LbH_gamma_CA_like Gamm 98.5 7.5E-07 1.6E-11 73.6 8.4 66 307-372 40-113 (153)
149 PRK14355 glmU bifunctional N-a 98.5 3.9E-07 8.5E-12 89.3 7.5 73 295-367 276-351 (459)
150 cd04650 LbH_FBP Ferripyochelin 98.4 1.2E-06 2.7E-11 72.3 8.5 65 307-371 41-113 (154)
151 PF02348 CTP_transf_3: Cytidyl 98.4 3.1E-05 6.7E-10 67.9 17.8 183 10-236 1-191 (217)
152 cd00897 UGPase_euk Eukaryotic 98.4 9.2E-06 2E-10 73.9 14.6 214 7-239 2-234 (300)
153 TIGR01172 cysE serine O-acetyl 98.4 6.2E-07 1.3E-11 74.7 6.5 75 299-373 61-150 (162)
154 PRK14358 glmU bifunctional N-a 98.4 4E-07 8.7E-12 89.5 6.3 105 270-374 219-343 (481)
155 PRK09451 glmU bifunctional N-a 98.4 4.9E-07 1.1E-11 88.6 6.6 64 307-370 267-333 (456)
156 cd04646 LbH_Dynactin_6 Dynacti 98.4 1.1E-06 2.5E-11 73.3 7.7 78 294-371 6-100 (164)
157 cd00208 LbetaH Left-handed par 98.4 1.4E-06 3.1E-11 62.8 7.3 62 307-368 2-76 (78)
158 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.4 7.2E-07 1.6E-11 80.2 6.8 65 305-369 29-117 (254)
159 COG1208 GCD1 Nucleoside-diphos 98.4 8.2E-07 1.8E-11 83.7 7.3 72 297-374 271-344 (358)
160 cd03360 LbH_AT_putative Putati 98.4 2.3E-06 5.1E-11 73.4 9.6 30 338-367 151-181 (197)
161 TIGR01852 lipid_A_lpxA acyl-[a 98.4 9.6E-07 2.1E-11 79.4 7.2 65 305-369 28-116 (254)
162 cd03351 LbH_UDP-GlcNAc_AT UDP- 98.4 1.2E-06 2.6E-11 78.8 7.6 73 297-369 39-135 (254)
163 PRK00892 lpxD UDP-3-O-[3-hydro 98.3 2.7E-06 5.9E-11 79.9 9.9 50 322-371 149-220 (343)
164 PLN02435 probable UDP-N-acetyl 98.3 6.3E-06 1.4E-10 79.5 12.2 211 7-238 115-364 (493)
165 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.3 1.6E-06 3.4E-11 76.5 7.5 77 296-372 101-196 (231)
166 PRK13627 carnitine operon prot 98.3 2.7E-06 5.8E-11 73.0 8.3 53 321-373 71-125 (196)
167 cd03358 LbH_WxcM_N_like WcxM-l 98.3 1.9E-06 4.2E-11 67.8 6.9 62 310-371 3-84 (119)
168 TIGR01853 lipid_A_lpxD UDP-3-O 98.3 1.5E-06 3.2E-11 80.7 7.0 57 297-353 131-211 (324)
169 cd00710 LbH_gamma_CA Gamma car 98.3 2.8E-06 6.1E-11 71.3 8.1 47 322-368 83-130 (167)
170 cd03359 LbH_Dynactin_5 Dynacti 98.3 2.1E-06 4.5E-11 71.6 7.1 48 322-369 73-122 (161)
171 PRK14359 glmU bifunctional N-a 98.3 9.7E-07 2.1E-11 85.8 6.0 65 305-369 282-357 (430)
172 PLN02472 uncharacterized prote 98.3 2E-06 4.4E-11 76.2 7.2 50 321-370 126-177 (246)
173 cd03359 LbH_Dynactin_5 Dynacti 98.3 3E-06 6.4E-11 70.7 7.7 50 321-370 42-105 (161)
174 COG1207 GlmU N-acetylglucosami 98.3 1.1E-06 2.3E-11 81.4 5.5 49 317-365 316-366 (460)
175 COG4284 UDP-glucose pyrophosph 98.3 1.3E-05 2.8E-10 75.7 12.6 212 7-236 104-337 (472)
176 PLN02296 carbonate dehydratase 98.3 2.7E-06 5.9E-11 76.4 7.7 66 307-372 93-172 (269)
177 PLN02694 serine O-acetyltransf 98.3 1.6E-06 3.4E-11 77.6 5.8 73 301-373 162-249 (294)
178 COG1044 LpxD UDP-3-O-[3-hydrox 98.2 2.2E-06 4.7E-11 77.6 6.5 15 338-352 166-180 (338)
179 PRK14352 glmU bifunctional N-a 98.2 1.7E-06 3.6E-11 85.4 6.2 68 307-374 308-377 (482)
180 PRK12461 UDP-N-acetylglucosami 98.2 3E-06 6.5E-11 75.8 7.1 34 321-354 47-94 (255)
181 TIGR01852 lipid_A_lpxA acyl-[a 98.2 3.4E-06 7.3E-11 75.9 7.2 14 322-335 77-91 (254)
182 cd05635 LbH_unknown Uncharacte 98.2 4.5E-06 9.8E-11 63.6 6.8 52 321-374 29-82 (101)
183 TIGR00965 dapD 2,3,4,5-tetrahy 98.2 3.6E-06 7.9E-11 74.6 7.1 53 321-373 147-210 (269)
184 cd03350 LbH_THP_succinylT 2,3, 98.2 4.7E-06 1E-10 67.7 7.1 66 307-372 33-111 (139)
185 TIGR00965 dapD 2,3,4,5-tetrahy 98.2 3.1E-06 6.7E-11 75.0 6.1 67 295-366 137-215 (269)
186 TIGR03570 NeuD_NnaD sugar O-ac 98.2 4.4E-06 9.5E-11 72.2 7.1 102 269-370 62-169 (201)
187 PRK05289 UDP-N-acetylglucosami 98.2 4.2E-06 9.1E-11 75.5 7.1 41 322-362 81-131 (262)
188 PRK14354 glmU bifunctional N-a 98.2 4.2E-06 9E-11 82.1 7.6 61 305-365 300-362 (458)
189 PF01704 UDPGP: UTP--glucose-1 98.2 3.2E-05 6.9E-10 73.9 13.1 263 6-286 54-355 (420)
190 PRK14360 glmU bifunctional N-a 98.2 3.1E-06 6.8E-11 82.8 6.3 63 306-368 298-362 (450)
191 cd06424 UGGPase UGGPase cataly 98.2 8.1E-06 1.7E-10 74.5 8.4 219 10-239 2-253 (315)
192 cd04647 LbH_MAT_like Maltose O 98.1 5.6E-06 1.2E-10 64.0 6.2 36 336-371 57-93 (109)
193 PRK14357 glmU bifunctional N-a 98.1 3.8E-06 8.3E-11 82.1 6.2 69 306-374 291-361 (448)
194 cd03350 LbH_THP_succinylT 2,3, 98.1 7.7E-06 1.7E-10 66.4 7.0 48 322-369 32-90 (139)
195 cd03360 LbH_AT_putative Putati 98.1 6.7E-06 1.5E-10 70.5 7.0 50 321-370 126-178 (197)
196 cd03352 LbH_LpxD UDP-3-O-acyl- 98.1 6.8E-06 1.5E-10 71.4 7.1 57 296-352 10-70 (205)
197 PRK00892 lpxD UDP-3-O-[3-hydro 98.1 6.4E-06 1.4E-10 77.4 7.1 54 316-369 160-240 (343)
198 KOG1322 GDP-mannose pyrophosph 98.1 3.1E-06 6.8E-11 75.7 4.3 75 293-367 240-329 (371)
199 cd00208 LbetaH Left-handed par 98.1 9E-06 2E-10 58.5 6.0 49 322-370 1-60 (78)
200 PLN02357 serine acetyltransfer 98.1 6E-06 1.3E-10 76.1 6.0 73 301-373 228-315 (360)
201 COG1861 SpsF Spore coat polysa 98.1 1.5E-05 3.2E-10 67.6 7.7 114 9-158 3-123 (241)
202 cd03357 LbH_MAT_GAT Maltose O- 98.0 2.4E-05 5.2E-10 65.7 8.5 65 305-369 62-145 (169)
203 KOG1460 GDP-mannose pyrophosph 98.0 9.9E-06 2.1E-10 71.4 5.9 71 302-372 285-358 (407)
204 PRK11830 dapD 2,3,4,5-tetrahyd 98.0 1.4E-05 3.1E-10 71.4 7.1 65 308-372 135-212 (272)
205 PRK11132 cysE serine acetyltra 98.0 1.3E-05 2.8E-10 71.7 6.6 75 299-373 141-230 (273)
206 COG0663 PaaY Carbonic anhydras 98.0 2E-05 4.3E-10 65.0 7.1 74 294-367 18-120 (176)
207 cd03354 LbH_SAT Serine acetylt 98.0 1.5E-05 3.3E-10 60.8 5.9 52 321-372 34-90 (101)
208 PRK11830 dapD 2,3,4,5-tetrahyd 98.0 1.3E-05 2.7E-10 71.8 6.0 40 321-360 176-218 (272)
209 PLN02739 serine acetyltransfer 98.0 1.4E-05 3.1E-10 73.1 6.4 75 299-373 205-294 (355)
210 cd04647 LbH_MAT_like Maltose O 97.9 2.2E-05 4.7E-10 60.7 6.1 51 321-371 21-87 (109)
211 PRK12461 UDP-N-acetylglucosami 97.9 2.2E-05 4.8E-10 70.3 7.0 14 322-335 78-92 (255)
212 cd04649 LbH_THP_succinylT_puta 97.9 4.7E-05 1E-09 61.1 8.0 71 299-370 19-105 (147)
213 PRK10191 putative acyl transfe 97.9 2.5E-05 5.4E-10 63.5 6.2 54 321-374 67-130 (146)
214 PRK09527 lacA galactoside O-ac 97.9 9.3E-05 2E-09 63.7 9.2 67 304-370 74-165 (203)
215 cd05825 LbH_wcaF_like wcaF-lik 97.8 5.2E-05 1.1E-09 58.5 6.6 51 322-372 24-92 (107)
216 PRK10502 putative acyl transfe 97.8 5.3E-05 1.2E-09 64.4 6.7 63 306-368 72-156 (182)
217 PRK10092 maltose O-acetyltrans 97.8 0.00013 2.8E-09 62.0 8.2 65 305-369 73-156 (183)
218 PRK09677 putative lipopolysacc 97.7 8.2E-05 1.8E-09 63.8 6.8 35 338-372 131-166 (192)
219 PLN02830 UDP-sugar pyrophospho 97.7 0.00031 6.7E-09 70.1 11.2 222 7-239 127-384 (615)
220 PRK10502 putative acyl transfe 97.7 9.6E-05 2.1E-09 62.8 6.7 32 321-352 71-106 (182)
221 cd03354 LbH_SAT Serine acetylt 97.6 0.00013 2.8E-09 55.6 5.5 70 302-371 5-83 (101)
222 cd04649 LbH_THP_succinylT_puta 97.6 0.00025 5.4E-09 56.9 7.0 69 300-370 8-83 (147)
223 COG1045 CysE Serine acetyltran 97.6 0.00017 3.6E-09 60.3 6.1 75 299-373 67-156 (194)
224 PLN02694 serine O-acetyltransf 97.5 0.00018 3.9E-09 64.6 6.0 35 321-355 212-248 (294)
225 PF00132 Hexapep: Bacterial tr 97.5 8.4E-05 1.8E-09 44.8 2.6 32 322-353 2-35 (36)
226 PRK00576 molybdopterin-guanine 97.5 0.00023 4.9E-09 60.4 6.0 95 29-153 3-101 (178)
227 TIGR03536 DapD_gpp 2,3,4,5-tet 97.5 0.0003 6.5E-09 63.4 6.6 48 321-369 224-281 (341)
228 cd03349 LbH_XAT Xenobiotic acy 97.4 0.00036 7.7E-09 56.9 6.0 35 337-371 73-108 (145)
229 TIGR01172 cysE serine O-acetyl 97.4 0.0004 8.6E-09 57.8 6.4 32 323-354 115-148 (162)
230 cd03357 LbH_MAT_GAT Maltose O- 97.4 0.00044 9.5E-09 58.1 6.5 33 322-354 119-153 (169)
231 PRK09527 lacA galactoside O-ac 97.4 0.00057 1.2E-08 58.9 7.0 67 303-371 59-148 (203)
232 TIGR03535 DapD_actino 2,3,4,5- 97.3 0.00069 1.5E-08 60.8 7.1 49 321-370 199-257 (319)
233 COG2171 DapD Tetrahydrodipicol 97.3 0.00086 1.9E-08 58.8 7.3 52 322-373 157-219 (271)
234 PRK10191 putative acyl transfe 97.3 0.00067 1.5E-08 55.2 6.0 46 322-367 93-140 (146)
235 COG0663 PaaY Carbonic anhydras 97.2 0.00075 1.6E-08 55.8 6.1 56 305-360 72-130 (176)
236 PRK09677 putative lipopolysacc 97.2 0.00075 1.6E-08 57.9 6.4 67 306-372 66-160 (192)
237 PF14602 Hexapep_2: Hexapeptid 97.2 0.00038 8.3E-09 41.2 3.1 29 323-352 3-32 (34)
238 PF00132 Hexapep: Bacterial tr 97.2 0.00031 6.8E-09 42.3 2.4 34 337-370 1-35 (36)
239 PRK11132 cysE serine acetyltra 97.2 0.001 2.3E-08 59.7 6.6 29 303-331 139-171 (273)
240 PLN02357 serine acetyltransfer 97.1 0.00081 1.8E-08 62.2 5.7 49 321-369 278-328 (360)
241 cd05825 LbH_wcaF_like wcaF-lik 97.1 0.0013 2.9E-08 50.6 5.9 29 337-365 62-91 (107)
242 TIGR03536 DapD_gpp 2,3,4,5-tet 97.1 0.0016 3.5E-08 58.8 7.0 33 336-369 223-259 (341)
243 COG1043 LpxA Acyl-[acyl carrie 97.0 0.0034 7.5E-08 54.1 8.2 17 337-353 81-97 (260)
244 PRK10092 maltose O-acetyltrans 97.0 0.0012 2.7E-08 55.9 5.7 75 299-373 73-166 (183)
245 PLN02739 serine acetyltransfer 97.0 0.0014 3.1E-08 60.2 6.2 53 303-355 229-293 (355)
246 KOG3121 Dynactin, subunit p25 97.0 0.00064 1.4E-08 53.4 2.9 69 302-370 63-135 (184)
247 KOG2638 UDP-glucose pyrophosph 96.9 0.083 1.8E-06 49.4 16.3 340 7-365 102-497 (498)
248 TIGR02353 NRPS_term_dom non-ri 96.8 0.0022 4.8E-08 65.8 6.5 32 339-370 162-194 (695)
249 COG1043 LpxA Acyl-[acyl carrie 96.8 0.0019 4.1E-08 55.7 4.9 18 354-371 81-98 (260)
250 PF14602 Hexapep_2: Hexapeptid 96.8 0.0011 2.5E-08 39.2 2.3 31 338-369 2-32 (34)
251 TIGR02353 NRPS_term_dom non-ri 96.7 0.0035 7.6E-08 64.4 6.6 63 305-367 597-676 (695)
252 TIGR03535 DapD_actino 2,3,4,5- 96.3 0.0095 2.1E-07 53.6 6.0 17 338-354 200-216 (319)
253 COG4801 Predicted acyltransfer 96.2 0.016 3.5E-07 49.7 6.8 40 337-376 33-72 (277)
254 COG2171 DapD Tetrahydrodipicol 95.9 0.011 2.4E-07 52.1 4.6 61 300-365 157-223 (271)
255 PF07959 Fucokinase: L-fucokin 95.9 0.017 3.7E-07 55.7 6.2 51 302-352 281-338 (414)
256 COG4801 Predicted acyltransfer 95.6 0.037 7.9E-07 47.5 6.3 60 315-374 27-88 (277)
257 cd03349 LbH_XAT Xenobiotic acy 95.2 0.034 7.4E-07 45.3 4.9 36 320-355 72-109 (145)
258 cd00761 Glyco_tranf_GTA_type G 94.9 0.2 4.4E-06 39.8 8.7 99 33-153 2-103 (156)
259 KOG3121 Dynactin, subunit p25 94.7 0.047 1E-06 43.1 3.9 34 336-369 83-122 (184)
260 TIGR03552 F420_cofC 2-phospho- 94.6 0.054 1.2E-06 46.4 4.9 85 39-152 30-116 (195)
261 KOG4042 Dynactin subunit p27/W 94.4 0.035 7.7E-07 44.2 2.8 49 323-371 80-130 (190)
262 COG1045 CysE Serine acetyltran 94.2 0.056 1.2E-06 45.4 3.7 33 323-355 121-155 (194)
263 KOG4750 Serine O-acetyltransfe 93.9 0.14 3E-06 43.9 5.5 37 339-375 202-239 (269)
264 PF00535 Glycos_transf_2: Glyc 92.0 1.6 3.5E-05 35.3 9.5 110 33-164 3-115 (169)
265 COG0110 WbbJ Acetyltransferase 91.8 0.54 1.2E-05 39.9 6.5 34 321-354 124-159 (190)
266 KOG4042 Dynactin subunit p27/W 88.9 0.37 8E-06 38.5 2.6 27 339-365 115-141 (190)
267 PF04519 Bactofilin: Polymer-f 88.7 1.2 2.5E-05 33.7 5.3 58 315-373 41-99 (101)
268 KOG4750 Serine O-acetyltransfe 87.0 0.75 1.6E-05 39.6 3.6 33 322-354 201-235 (269)
269 cd04186 GT_2_like_c Subfamily 84.7 9.7 0.00021 30.6 9.3 97 34-155 3-102 (166)
270 PRK13412 fkp bifunctional fuco 83.1 1.3 2.8E-05 47.0 3.9 40 333-372 332-372 (974)
271 cd06434 GT2_HAS Hyaluronan syn 82.9 9 0.00019 33.3 8.8 96 34-153 6-103 (235)
272 KOG2388 UDP-N-acetylglucosamin 82.8 0.76 1.7E-05 44.1 2.0 66 6-75 95-175 (477)
273 PLN02726 dolichyl-phosphate be 80.5 11 0.00024 33.1 8.6 49 108-162 79-128 (243)
274 cd02525 Succinoglycan_BP_ExoA 78.8 14 0.00031 32.1 8.8 103 34-159 6-113 (249)
275 cd04179 DPM_DPG-synthase_like 78.5 13 0.00029 30.7 8.1 107 34-162 3-114 (185)
276 cd06423 CESA_like CESA_like is 78.0 13 0.00029 29.7 7.9 101 34-155 3-106 (180)
277 cd04188 DPG_synthase DPG_synth 75.9 15 0.00033 31.4 7.9 49 108-162 68-117 (211)
278 cd06442 DPM1_like DPM1_like re 73.1 27 0.00059 29.8 8.9 105 34-160 3-111 (224)
279 cd06439 CESA_like_1 CESA_like_ 71.0 22 0.00048 31.1 8.0 104 26-153 25-135 (251)
280 PF04519 Bactofilin: Polymer-f 68.4 26 0.00057 26.2 6.7 42 332-375 42-84 (101)
281 cd02510 pp-GalNAc-T pp-GalNAc- 65.4 41 0.00088 30.6 8.7 104 34-157 4-113 (299)
282 cd06433 GT_2_WfgS_like WfgS an 64.8 34 0.00074 28.3 7.6 97 34-155 4-103 (202)
283 cd04195 GT2_AmsE_like GT2_AmsE 64.4 56 0.0012 27.3 8.9 99 33-154 3-107 (201)
284 cd06427 CESA_like_2 CESA_like_ 64.1 55 0.0012 28.6 9.0 49 108-162 70-119 (241)
285 cd04192 GT_2_like_e Subfamily 62.2 43 0.00093 28.6 7.9 105 33-157 2-112 (229)
286 cd06420 GT2_Chondriotin_Pol_N 61.7 37 0.0008 27.8 7.1 99 34-152 3-104 (182)
287 COG1664 CcmA Integral membrane 60.4 33 0.00071 27.9 6.1 57 317-373 64-120 (146)
288 PF13641 Glyco_tranf_2_3: Glyc 59.8 5.8 0.00013 34.3 1.9 38 109-152 73-111 (228)
289 cd04187 DPM1_like_bac Bacteria 59.7 51 0.0011 27.1 7.6 45 108-159 66-111 (181)
290 PRK11204 N-glycosyltransferase 58.4 54 0.0012 31.5 8.5 101 33-155 59-162 (420)
291 cd02522 GT_2_like_a GT_2_like_ 57.8 63 0.0014 27.4 8.1 94 34-156 5-101 (221)
292 cd02520 Glucosylceramide_synth 57.4 1.1E+02 0.0024 25.6 9.4 36 111-152 75-111 (196)
293 KOG2978 Dolichol-phosphate man 57.3 94 0.002 26.4 8.3 101 41-164 19-125 (238)
294 PRK14583 hmsR N-glycosyltransf 56.7 53 0.0012 32.0 8.2 101 32-154 79-182 (444)
295 PRK10714 undecaprenyl phosphat 55.9 88 0.0019 29.1 9.2 46 108-160 76-122 (325)
296 cd04184 GT2_RfbC_Mx_like Myxoc 54.2 77 0.0017 26.4 8.0 39 108-152 69-108 (202)
297 PRK10073 putative glycosyl tra 53.4 90 0.0019 29.1 8.8 48 108-161 71-119 (328)
298 cd04196 GT_2_like_d Subfamily 50.7 1.1E+02 0.0023 25.7 8.3 41 108-154 65-106 (214)
299 cd06421 CESA_CelA_like CESA_Ce 47.5 1.4E+02 0.003 25.5 8.7 99 34-154 7-111 (234)
300 TIGR03111 glyc2_xrt_Gpos1 puta 47.0 1.1E+02 0.0023 29.9 8.5 42 108-155 117-159 (439)
301 cd06438 EpsO_like EpsO protein 45.0 1.7E+02 0.0038 24.0 9.3 105 33-158 2-111 (183)
302 cd04185 GT_2_like_b Subfamily 43.1 1.5E+02 0.0032 24.8 8.0 100 34-153 3-105 (202)
303 TIGR03472 HpnI hopanoid biosyn 42.2 1.2E+02 0.0025 28.9 7.8 101 33-153 46-152 (373)
304 TIGR03469 HonB hopene-associat 41.8 1.6E+02 0.0036 28.0 8.8 116 33-159 45-165 (384)
305 PRK00923 sirohydrochlorin coba 40.0 26 0.00056 27.4 2.5 23 38-61 44-66 (126)
306 PF01983 CofC: Guanylyl transf 39.2 8.9 0.00019 33.4 -0.3 107 9-152 1-113 (217)
307 cd02526 GT2_RfbF_like RfbF is 38.1 2.5E+02 0.0055 23.9 11.2 39 108-149 58-97 (237)
308 PRK10018 putative glycosyl tra 37.8 2.4E+02 0.0052 25.6 8.8 41 108-154 71-112 (279)
309 cd02511 Beta4Glucosyltransfera 37.8 1.9E+02 0.0042 24.9 8.0 39 108-152 57-96 (229)
310 cd06435 CESA_NdvC_like NdvC_li 37.5 1.5E+02 0.0033 25.4 7.4 98 33-153 3-110 (236)
311 TIGR01556 rhamnosyltran L-rham 37.0 1.9E+02 0.0041 25.9 8.1 45 108-155 56-101 (281)
312 PRK11498 bcsA cellulose syntha 33.5 2.1E+02 0.0045 30.7 8.4 48 109-163 326-374 (852)
313 PTZ00260 dolichyl-phosphate be 31.7 2.5E+02 0.0055 26.1 8.1 49 108-162 148-200 (333)
314 cd03409 Chelatase_Class_II Cla 31.4 39 0.00084 24.9 2.2 22 41-62 45-66 (101)
315 COG1215 Glycosyltransferases, 28.7 1.9E+02 0.0041 27.7 7.1 105 33-157 59-167 (439)
316 TIGR02990 ectoine_eutA ectoine 28.5 3.5E+02 0.0075 24.0 8.0 93 46-151 111-203 (239)
317 COG1664 CcmA Integral membrane 28.3 2.9E+02 0.0064 22.4 6.8 6 322-327 51-56 (146)
318 cd04180 UGPase_euk_like Eukary 24.8 7.6 0.00017 35.1 -3.2 64 130-195 108-177 (266)
319 cd06436 GlcNAc-1-P_transferase 24.3 4E+02 0.0088 22.0 7.5 105 34-152 3-114 (191)
320 cd07039 TPP_PYR_POX Pyrimidine 23.9 2E+02 0.0044 23.6 5.4 31 44-74 4-34 (164)
321 TIGR03030 CelA cellulose synth 23.5 4E+02 0.0086 28.0 8.6 41 109-155 215-256 (713)
322 cd06913 beta3GnTL1_like Beta 1 22.8 4.7E+02 0.01 22.0 8.2 43 108-156 70-113 (219)
323 PRK13915 putative glucosyl-3-p 22.4 3.8E+02 0.0082 24.6 7.4 50 108-163 101-153 (306)
324 PRK05782 bifunctional sirohydr 21.8 72 0.0016 29.9 2.4 55 5-62 2-71 (335)
325 PF05060 MGAT2: N-acetylglucos 21.8 69 0.0015 30.2 2.3 55 20-74 23-80 (356)
326 PHA02672 ORF110 EEV glycoprote 21.6 68 0.0015 25.9 1.9 24 355-378 140-163 (166)
327 cd06437 CESA_CaSu_A2 Cellulose 21.2 2.1E+02 0.0045 24.6 5.2 35 110-150 75-110 (232)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-65 Score=460.84 Aligned_cols=341 Identities=42% Similarity=0.721 Sum_probs=300.1
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
++.+-|+|||||.|+||.|||..++||-+|++|||+||+++|.++.++|+++|.|++.|+...+.+|+...+++..+..
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~- 81 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK- 81 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999876554432211
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
...+.++++.+. +.++.||.||++|+++.+..+.+.. .+.+++++||++++.|+.+++++|.++++++|+++.+
T Consensus 82 -~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~~~---~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 82 -NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRRSD---PEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred -cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHhcC---CCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 235788887766 3456799999999999999987643 7999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC---
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~--- 242 (378)
++....+.||++..|++++|++|.|||..... ...++++|+|+|+.++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99888899999999999999999999987221 12378999999999999999886543
Q ss_pred CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCcee-eCceeee
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVD 321 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~ 321 (378)
...+|+++++|.+++.+.+++|+++|||.||||.++|++||+++++..+.+.+++++|+|+++....||+++ .++.+.|
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 357899999999999999999999999999999999999999999988888899999999999999999999 6777888
Q ss_pred eEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 322 s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
|.|+.||+|.| .|+||+|+.|++|++++.|++|+||++++|+++|.+---+
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aI 347 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAI 347 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEE
Confidence 88888888876 8888888888888888888888888888888888876543
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=8.7e-59 Score=447.70 Aligned_cols=368 Identities=71% Similarity=1.160 Sum_probs=298.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.|+||+|||.++||||+||+|+||||+|+|+++.++|+++|+|+++++.+++.+|+...|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999977999999999999999999999999999999999865534333333
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
....+.++...|.. .+..+++||+++++.++.++++....+.++|++++||++++.|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 22235555544432 1123468999999999887754211124799999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
++..++..||.+.+|++++|.++.|||.......++++.++|.+++.+....++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87555688999999988999999999976555566777777776665444445789999999999999777776544444
Q ss_pred chhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCceeeCceeeeeEE
Q 017030 246 DFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (378)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~s~I 324 (378)
++..++++.++.+ .++++|.++|||.|+++|++|++|+++++...+...++++++.+++.....+|+.+.++.+++|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 6778899999876 589999999999999999999999999998776666777777888877777888887788888888
Q ss_pred ecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCC-------------------CeEeeeeeeeeeeEe
Q 017030 325 SHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPL-------------------CRRIWKCSSLCSVIC 375 (378)
Q Consensus 325 g~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~-------------------~~~~~~~~~~~~~~~ 375 (378)
+++|.|+++.|.+|+|+++|+||+||+|.+||++.+ ++|+++|.+..+||.
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~ 388 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIID 388 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEec
Confidence 888888877888888888888888888888888662 268888877777764
No 3
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9.6e-58 Score=439.23 Aligned_cols=345 Identities=59% Similarity=1.021 Sum_probs=265.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++++|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++++|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 458999999999999999999999999999999988999999999999999999999999999999997544221 11
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
....+.++...|.. ....+++||++|++.+++++++. ..++|+|++||++++.|+.+++++|.++++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11223444433321 11223479999999999998631 13789999999999999999999999999999999987
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
.+...+..||++..|++++|..|.|||.......+.++.++|...+.+.....+++++|+|+|++++|.+++++. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 654446789999999889999999999865445566666777666666555567899999999999997777653 2334
Q ss_pred chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc-cCCCCccccCCCCcEEccCCCCCCceeeCceeeeeEE
Q 017030 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l-~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~s~I 324 (378)
++.+++++.++.+.++++|.++|||.|+|||++|++||++++ ...+...++.+.+++++.+.+.+|+.+.++.+++|+|
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~i 311 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESII 311 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEE
Confidence 567789999998899999999999999999999999999998 5455555666667777666666665555555555555
Q ss_pred ecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCC
Q 017030 325 SHGSFITSSFIEHSVVGIRSRINANVHLKVSPANP 359 (378)
Q Consensus 325 g~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~ 359 (378)
|++|.|.++.|.+|+||++|+||+||.|++|||++
T Consensus 312 g~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~ 346 (429)
T PRK02862 312 AEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMG 346 (429)
T ss_pred CCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEec
Confidence 55555544555555555555555555555555554
No 4
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.3e-57 Score=397.09 Aligned_cols=321 Identities=34% Similarity=0.476 Sum_probs=266.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+.|+|+||.||.||||+|||..+|||++|++|+ |||+|++++|.++|+++|+++++|+.+++..|+.+.| +..++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhccc
Confidence 789999999999999999999999999999999 9999999999999999999999999998888887765 34444
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
++++...|++ ++||++.+..+++++.... +.+|+|++||++++.|+.+++++|++++++.|++++++
T Consensus 83 ---Vei~~s~ete-------plgtaGpl~laR~~L~~~~---~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE-------PLGTAGPLALARDFLWVFE---DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC-------CCcccchHHHHHHHhhhcC---CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 7788777765 2445544444444443210 24899999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEECC-CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 167 DDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
++ ++.||++..|+ .|+|.+|.|||+... ++.+++|+|+|++++|++++. .| .
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~~--~p--t 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRILL--RP--T 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhhh--cc--c
Confidence 88 89999999998 899999999998532 356789999999999988862 23 3
Q ss_pred chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCc--------------cccC------CCCcEEcc
Q 017030 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMF--------------SFYD------ATKPIYTS 305 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~--------------~~~~------~~~~i~~~ 305 (378)
+++.+++|.+++++++++|.++|||+|||+|.||+.+...+++..+.. .+.+ .++.|.++
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~ 282 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPN 282 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCC
Confidence 488999999999999999999999999999999999988887653211 1222 34555666
Q ss_pred CCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 306 RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
++||++++| +++.+++|.|-.+..++ ++.|+.|+++++++||.|++|++ |+||+|+.|.+.-.+++-
T Consensus 283 vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 283 VVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred ceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccc
Confidence 777777777 57778888888888888 78888889999999999999887 889999998887766654
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.4e-56 Score=427.73 Aligned_cols=344 Identities=34% Similarity=0.584 Sum_probs=256.8
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|..+++.+|+...|.+. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 4788999999999999999999999999999999878999999999999999999999999999999997544211 11
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEe
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
....+...+..+. .+..+++||++|++.+++++.+. ..++|+|++||++++.|+.+++++|.++++++|+++.
T Consensus 80 -~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 1111221111111 12234689999999999999641 0246999999999999999999999999999999988
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC---
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF--- 241 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~--- 241 (378)
+.+...+..||.+..|++|+|.+|.|||....... ....+.++++|+|+|++++|.+++++..
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 76544467899999998899999999986432100 0012368999999999999866666421
Q ss_pred CCCCchhcccccccccccceEEEEe------------cceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEc-----
Q 017030 242 PTANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT----- 304 (378)
Q Consensus 242 ~~~~~~~~~~l~~l~~~~~i~~~~~------------~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~----- 304 (378)
....++..++++.+++++++++|.+ +|||.||++|++|++||+++|+..+...++.+...+++
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 1234566789999999889999976 59999999999999999999986554433333333332
Q ss_pred ----------------cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeee
Q 017030 305 ----------------SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKC 367 (378)
Q Consensus 305 ----------------~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~ 367 (378)
++.|+++|.|++++|++|+||+||.|+ +|.|++|+|+++|+||++|.|.+|||+++++|+++|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~ 378 (407)
T PRK00844 299 PPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGA 378 (407)
T ss_pred CCceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCC
Confidence 344555566655666666666677666 666666666777777766777667776666666666
Q ss_pred eeee
Q 017030 368 SSLC 371 (378)
Q Consensus 368 ~~~~ 371 (378)
.+.+
T Consensus 379 ~i~~ 382 (407)
T PRK00844 379 TIGV 382 (407)
T ss_pred EECC
Confidence 6654
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.3e-56 Score=423.82 Aligned_cols=336 Identities=37% Similarity=0.604 Sum_probs=255.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+. .+|
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~------~~~ 74 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG------SPW 74 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC------Ccc
Confidence 57899999999999999999999999999999997899999999999999999999999999999998532 233
Q ss_pred CCc----eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEE
Q 017030 86 GDG----CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITI 161 (378)
Q Consensus 86 ~~~----~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti 161 (378)
+.. .+.+++..+.+ ..+.+++||++||+.+++++++. ..++|+|++||++++.|+.++++.|.++++++|+
T Consensus 75 ~~~~~~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl 149 (380)
T PRK05293 75 DLDRINGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTI 149 (380)
T ss_pred cccCCCCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEE
Confidence 311 13444222221 12234689999999999998531 1368999999999999999999999998899998
Q ss_pred EEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
++...+...+..||.+..|++++|.++.|||.... ++++++|+|+|++++|.+++++..
T Consensus 150 ~~~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~ 208 (380)
T PRK05293 150 AVIEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDE 208 (380)
T ss_pred EEEEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHh
Confidence 88766544467899999988899999999986432 357899999999998877766532
Q ss_pred C---CCCchhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCcee-eC
Q 017030 242 P---TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DD 316 (378)
Q Consensus 242 ~---~~~~~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~ 316 (378)
. ...++..++++.++++ .++++|.+++||.|+||+++|++|+++++...+...++++.+.+++.+.+.+|++| ++
T Consensus 209 ~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 288 (380)
T PRK05293 209 KNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAEN 288 (380)
T ss_pred hcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCC
Confidence 2 2235567889998875 57999999999999999999999999999887776677777777777777777777 45
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.|.+|+||+||.|+ +.+.+|+||++|+||++|+|++|+|+++++|+++|.+..|+|
T Consensus 289 ~~i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii 345 (380)
T PRK05293 289 AKVKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAII 345 (380)
T ss_pred CEEecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEE
Confidence 555555555555554 234455555555555555555555555555555555555544
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.2e-55 Score=421.27 Aligned_cols=343 Identities=35% Similarity=0.582 Sum_probs=254.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++++|||||||.||||+|+|.++||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.|.+.. .+.
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~~- 91 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EEL- 91 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cCC-
Confidence 679999999999999999999999999999999559999999999999999999999999999999975442100 011
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
...+.+++..+.. ..+.+++||++|++.++.++++. ..++|+|++||++++.|+.+++++|.++++++|+++.+.
T Consensus 92 ~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~ 166 (425)
T PRK00725 92 GEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEV 166 (425)
T ss_pred CCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEec
Confidence 1234455433321 12234689999999999999631 136899999999999999999999999999999999877
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC---CC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PT 243 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~---~~ 243 (378)
+...+..||++..|++++|.+|.|||..... +. ....++++++|+|+|++++|.+++++.. ..
T Consensus 167 ~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~ 232 (425)
T PRK00725 167 PREEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNS 232 (425)
T ss_pred chhhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCc
Confidence 5445788999999988999999999864320 00 0012368999999999998876665432 12
Q ss_pred CCchhcccccccccccceEEEEec-----------ceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEc--------
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT-------- 304 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~-----------~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~-------- 304 (378)
..++..++++.+++++++++|.++ +||.|+|||++|++||++++...+...+++..+.+++
T Consensus 233 ~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~ 312 (425)
T PRK00725 233 SHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPA 312 (425)
T ss_pred cchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCC
Confidence 345667899999999999999885 6999999999999999999876544433333333333
Q ss_pred --------------cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 305 --------------SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 305 --------------~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
++.|+++|.|+++.|++|+||+||.|+ +|.|++|+|+++|+||++|+|++|||+++++|+++|.+
T Consensus 313 ~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i 392 (425)
T PRK00725 313 KFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVI 392 (425)
T ss_pred eEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEE
Confidence 444555555555555666666666665 56666666666666666666666666666666666555
Q ss_pred e
Q 017030 370 L 370 (378)
Q Consensus 370 ~ 370 (378)
.
T Consensus 393 ~ 393 (425)
T PRK00725 393 G 393 (425)
T ss_pred C
Confidence 4
No 8
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.1e-53 Score=403.55 Aligned_cols=333 Identities=23% Similarity=0.371 Sum_probs=258.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChh-hHHHHHHhhccCCCCccc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (378)
+.|+|||||||+|+||+|||.++||||+||+||||||+|++++|.++|+++|+|+++|..+ ++++|+.+.. .|
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~------~~ 74 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGR------EW 74 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCC------CC
Confidence 4689999999999999999999999999999997899999999999999999999999887 9999986422 23
Q ss_pred CCce-----EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEE
Q 017030 86 GDGC-----VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADIT 160 (378)
Q Consensus 86 ~~~~-----i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~t 160 (378)
+... ..++ .++... ...|++++++.++++++.. ..++|+|++||++++.|+.+++++|+++++++|
T Consensus 75 ~~~~~~~~~~~~~--~~e~~~----l~tg~~~a~~~a~~~l~~~---~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~t 145 (369)
T TIGR02092 75 DLHRKRDGLFVFP--YNDRDD----LSEGGKRYFSQNLEFLKRS---TSEYTVVLNSHMVCNIDLKAVLKYHEETGKDIT 145 (369)
T ss_pred CcccccCcEEEEe--ccCCCC----cccChHHHHHHHHHHHHhC---CCCEEEEECCCEEEecCHHHHHHHHHHcCCCEE
Confidence 2211 1111 122111 1136777888888888421 137899999999999999999999999999999
Q ss_pred EEEeecCCCCCCcce-EEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 161 ISCLPMDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 161 i~~~~~~~~~~~~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+++.+.+...+..|| .+..+++|++..+.+++.... ...+++|+|+|++++|.+++++
T Consensus 146 l~~~~v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~ 204 (369)
T TIGR02092 146 VVYKKVKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYE 204 (369)
T ss_pred EEEEecCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHH
Confidence 999887633356674 456776778887754332211 1356899999999988667664
Q ss_pred hCCC-CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCcccc-CCCCcEEccCCCCCCcee-eC
Q 017030 240 RFPT-ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DD 316 (378)
Q Consensus 240 ~~~~-~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~-~~~~~i~~~~~i~~~~~i-~~ 316 (378)
..+. ...+..+++++++.+.++++|.+++||.|+|||++|++|+++++++......+ .....++....+.+|++| ++
T Consensus 205 ~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~ 284 (369)
T TIGR02092 205 CIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAEN 284 (369)
T ss_pred HhhcCccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCC
Confidence 3222 22344578888888889999999999999999999999999999875332222 223455555556688888 68
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
+.|.+|+||+||.|+ +.|++|+||++|+||+||+|++|+|++++.|+++|.+..|++|.
T Consensus 285 ~~i~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~ 343 (369)
T TIGR02092 285 SKVENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDK 343 (369)
T ss_pred CEEEEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECC
Confidence 888999999999997 67889999999999999999999999999999999999988873
No 9
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-54 Score=402.33 Aligned_cols=311 Identities=28% Similarity=0.413 Sum_probs=256.1
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.|+|||||||.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+++++|..+++++|+.+.+ .++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~------~~~~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE------GLGV 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc------ccCC
Confidence 48999999999999999999999999999999 9999999999999999999999999999999987642 2222
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. +.++. +. .++||+++|+.+.+++. .++|++++||++++.|+.+++++|+++++.+|++..+..
T Consensus 74 ~-I~y~~--e~-------~~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 74 R-ITYVV--EK-------EPLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred c-eEEEe--cC-------CcCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 2 22222 11 14799999999999986 389999999999999999999999999888999998887
Q ss_pred CCCCCcceEEEECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 017030 168 DSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (378)
++ ..||.+..+++ ++|.+|.|||.... ..++++++|+|+|++++|+ .++. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 63 78999988744 59999999995311 1247899999999999997 3332 23456
Q ss_pred hhcccccccccccc-eEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCC--------CcEEccCCCCCCcee-eC
Q 017030 247 FGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDAT--------KPIYTSRRNLPPSKI-DD 316 (378)
Q Consensus 247 ~~~~~l~~l~~~~~-i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~--------~~i~~~~~i~~~~~i-~~ 316 (378)
|..++++.+++.+. +++|.++|||.||++|++|++|+..+++........... ..+.+.+.+++++.| .+
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~ 273 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPG 273 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCC
Confidence 66689999999887 999999999999999999999999998654222111000 344555666666666 45
Q ss_pred ceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 317 SKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 317 ~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.|. +|+||+||.|+ ++.|+||+|+++|+||+++.|.+|||+.+|+|+.
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 6665 69999999999 8999999999999999999999999999999986
No 10
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3.2e-51 Score=387.83 Aligned_cols=342 Identities=45% Similarity=0.768 Sum_probs=252.5
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|.++||||+|++|+||||+|++++|.++|+++|+|++++..+++.+|+.+.+.+.. . . ...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~-~-~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDG-F-I-DGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccC-c-c-CCCE
Confidence 69999999999999999999999999999679999999999999999999999999999999975442110 0 0 0124
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
++++..+.. ....+++||+++++.+..++++. ..++|++++||++++.++.++++.|.++++++|+++.+.+...
T Consensus 78 ~~~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQRE--SGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 444322221 12334579999999999988531 1368999999999999999999999988888899888765444
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC---CCCch
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~---~~~~~ 247 (378)
+..||++..|++++|.++.|||......... ...+++++|+|+|++++|.+++++... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~--------------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIPGM--------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccccc--------------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 6789999998888999999998543210000 011378999999999998666665321 23355
Q ss_pred hcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEcc-CCCCCCcee-eCceeeeeEEe
Q 017030 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIIS 325 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~-~~i~~~~~i-~~~~i~~s~Ig 325 (378)
..++++.+++++++++|.++++|.||+|+++|++|+++++++.+....+.....+++. ..+.+++++ +++.+.+|+||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 6789999999899999999999999999999999999999875443333334444332 233455555 34466666667
Q ss_pred cCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 326 HGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 326 ~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+||.|+++.|.+|+||++|+||++|+|.+|+|++++.|+.+|.+..|++
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~iv 347 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAII 347 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEE
Confidence 7777764366666677777777667776677776666666666666655
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.7e-47 Score=359.68 Aligned_cols=314 Identities=22% Similarity=0.297 Sum_probs=228.5
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeec-ChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|++++++ ..+++.+|+.+. ..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~------~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG------ERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc------cccCce
Confidence 689999999999999999999999999999 999999999999999999999998 888899888542 233322
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
. .++. +. .+.||+++++.++++++ .++|++++||++++.++.+++++|.++++++|+++.+.++
T Consensus 74 ~-~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 I-TYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred E-EEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 2 2221 21 13699999999999885 3789999999999999999999999999999999988765
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (378)
+..||.+..+++++|.++.|||.... +.++++|+|+|++.+++ .++...+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 56799988876678999999986432 35789999999997764 45543321 122
Q ss_pred hhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhcccCCCC-cc------------ccCCCCcEEccCCCCCCc
Q 017030 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM-FS------------FYDATKPIYTSRRNLPPS 312 (378)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~~-~~------------~~~~~~~i~~~~~i~~~~ 312 (378)
...++++.++++ .++++|.+++||.||+||+||++|++.++++... .. .+.+++.| .++.|.+++
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~ 272 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDDESKIRGRVVVGEGAKI-VNSVIRGPA 272 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCCcCCCCEEcCCEEECCCCEE-eCCEEECCc
Confidence 235778888765 4799999999999999999999999999975321 10 11122222 233333334
Q ss_pred ee-eCceeeee------EEecCcEEcceEEeeceEcCCCEECCC-CEEeeeeeCCCCeEeeeeeeee
Q 017030 313 KI-DDSKIVDS------IISHGSFITSSFIEHSVVGIRSRINAN-VHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 313 ~i-~~~~i~~s------~Ig~~~~I~~~~i~~SiI~~~~~Ig~~-~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
.| ++|.|.+| +||+||.|+++.|.+|+|+++++|+.+ +.+.+|+++++++|+.++.++.
T Consensus 273 ~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 273 VIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred EECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCccccc
Confidence 33 23444333 333333333333456666666666666 3666666666666666666653
No 12
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-48 Score=331.29 Aligned_cols=330 Identities=25% Similarity=0.344 Sum_probs=274.3
Q ss_pred cceeEEEEcCC--CCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCc
Q 017030 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (378)
Q Consensus 7 ~~~~avIla~G--~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~ 83 (378)
++.+||||.|| .||||+||+.+.||||+||+|+ |||+|.|+++.+ .|..+|+++.-|..+.+.+++..-. .
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~-----~ 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ-----Q 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH-----h
Confidence 46799999999 6999999999999999999999 999999999998 6999999999888887877775321 1
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+|.. .++++.. ..++||+++|...++.+-.. ..+.+.|+++|+-+++++.++++.|+..+..+|++.
T Consensus 75 e~~~-pvrYL~E---------~~plGtaGgLyhFrdqIl~g---~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 75 EFKV-PVRYLRE---------DNPLGTAGGLYHFRDQILAG---SPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred hccc-chhhhcc---------CCCCCcccceeehhhHHhcC---CCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 1211 1333322 23589999999999887432 158899999999999999999999999999999999
Q ss_pred eecCCCCCCcceEEEEC-CCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh---h
Q 017030 164 LPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---W 239 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~---~ 239 (378)
+++.....++||.+..| ..|+|+++.|||...- ++.+++|+|+|++++|+.+-+ +
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q 200 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQ 200 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHH
Confidence 99988778999999988 5799999999998643 478899999999998864321 1
Q ss_pred h---C----------CCC---CchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC-----------CC
Q 017030 240 R---F----------PTA---NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-----------PM 292 (378)
Q Consensus 240 ~---~----------~~~---~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~-----------~~ 292 (378)
. . +.. ..+..|+|+.++.++++++|...++|..|.|+-+-+.|++.+|++. ++
T Consensus 201 ~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pg 280 (407)
T KOG1460|consen 201 RQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPG 280 (407)
T ss_pred HHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCC
Confidence 0 0 001 1234678888999999999999999999999999999999888742 11
Q ss_pred c-------cccCCCCcEEccCCCCCCcee-------eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee---
Q 017030 293 F-------SFYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV--- 354 (378)
Q Consensus 293 ~-------~~~~~~~~i~~~~~i~~~~~i-------~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~--- 354 (378)
. .+++|++++++.++|+|++.| +++++++|+|-++|.|. ++.|-|||||++++||.+++++.
T Consensus 281 t~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 281 TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred CCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccc
Confidence 1 267788888999999998888 47888999999999999 99999999999999999999987
Q ss_pred -----------eeeCCCCeEeeeeeeeeeeEee
Q 017030 355 -----------SPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 355 -----------sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
+|+|..+.++|.|.++.|++=-
T Consensus 361 ~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 361 EPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred ccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 7899999999999999998743
No 13
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-45 Score=322.73 Aligned_cols=342 Identities=18% Similarity=0.243 Sum_probs=250.8
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecC-hhhHHHHHHhhccCCCCc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~ 83 (378)
.+.++|||++|||.||||-.++...|||||||+|+ |||+|+|.+|.++|+++|+|++.+. ...++..+...+.+. .
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~--~ 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLK--K 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccc--c
Confidence 46789999999999999999999999999999999 9999999999999999999999763 445777775543221 1
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+ ...+++-...+. ..||+++|+.....+. .+|||+++||.+++.++..++++++..++...+++
T Consensus 83 ~--~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462|consen 83 R--PDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred c--ccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHh
Confidence 1 001232222222 2699999999998886 37999999999999999999999997766544444
Q ss_pred eecCC---------CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 164 LPMDD---------SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 164 ~~~~~---------~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
..... +....+.++..++++.-.-|..... .....+.+..+++|.+|+-.. .+.+.++++|+|+.++++
T Consensus 147 ~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d 224 (433)
T KOG1462|consen 147 GNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVID 224 (433)
T ss_pred ccccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHH
Confidence 33211 0112233444444443344433322 222457788888888887654 457899999999999996
Q ss_pred HHHhhhCCCCCchhcccccccccc---------------------------------cceEEEEe--cceEEecCCHHHH
Q 017030 235 NLLRWRFPTANDFGSEIIPASANE---------------------------------QFLKAYLF--NDYWEDIGTIRSF 279 (378)
Q Consensus 235 ~~l~~~~~~~~~~~~~~l~~l~~~---------------------------------~~i~~~~~--~~~~~~i~t~~~~ 279 (378)
++.+. +...+|..+++|.++++ .++++|+. +.-+.+++|.-.|
T Consensus 225 -~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y 302 (433)
T KOG1462|consen 225 -LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSY 302 (433)
T ss_pred -HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHH
Confidence 44442 33455666777776642 23455544 3468899999999
Q ss_pred HHHHH--hcccCCCCccccC----CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCE
Q 017030 280 FEANL--ALTAHPPMFSFYD----ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVH 351 (378)
Q Consensus 280 ~~a~~--~~l~~~~~~~~~~----~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~ 351 (378)
+++|+ .+.+-.+...+.. ..+.+..++.+++++.| +++.|+.|+||+||.|| ++.|.||+|++|++||+|+.
T Consensus 303 ~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~ 382 (433)
T KOG1462|consen 303 MEINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVN 382 (433)
T ss_pred HhhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcc
Confidence 99994 3332222221111 12445668889999999 69999999999999999 89999999999999999999
Q ss_pred EeeeeeCCCCeEeeeeee
Q 017030 352 LKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 352 i~~sIi~~~~~~~~~~~~ 369 (378)
|+|||||++|+|++||-+
T Consensus 383 IensIIg~gA~Ig~gs~L 400 (433)
T KOG1462|consen 383 IENSIIGMGAQIGSGSKL 400 (433)
T ss_pred eecceecccceecCCCee
Confidence 999999999999999865
No 14
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-43 Score=304.57 Aligned_cols=233 Identities=26% Similarity=0.476 Sum_probs=198.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecCh-hhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.||||+|+|...||.|+||.+| |||+|.++.|..+|+++|.|+++++. ..++++ +++|.+|+.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l------lGdgs~~gv 73 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL------LGDGSDFGV 73 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh------hcCccccCc
Confidence 7999999999999999999999999999999 99999999999999999999998744 445444 478888885
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
.. -+..|++ +.|-|+|+..+.++++ +++|+++.||.++..++.++++.+.+++.++++++.+++
T Consensus 74 ~i---tY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 74 DI---TYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred ce---EEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 53 3334553 4699999999999997 499999999998877999999999998999999999999
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC-c
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN-D 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~-~ 246 (378)
+ |++||++++|++++|+++.|||..++ |+++-+|+|+|++++|+ +++...|+.+ +
T Consensus 138 d--P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGE 193 (286)
T COG1209 138 D--PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGE 193 (286)
T ss_pred C--cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCc
Confidence 7 89999999998999999999999764 58999999999999995 6666555422 2
Q ss_pred h-hcccccccccccc-eEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 247 F-GSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 247 ~-~~~~l~~l~~~~~-i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
+ ..|.++.+++++. +......|+|.|.||++||++|++.++.
T Consensus 194 lEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 194 LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 2 2567788887665 5555677899999999999999998875
No 15
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-43 Score=327.31 Aligned_cols=345 Identities=16% Similarity=0.227 Sum_probs=263.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHh-hccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLAR-AYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~-~~~~~~~~~ 84 (378)
...+|||+||.-+-+||+|+|...|+.|||++|. |||+|+|++|.++|+.+|+|+++.+..++.+|+++ .|.. .
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~----~ 96 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYL----P 96 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccc----c
Confidence 3679999999999999999999999999999999 99999999999999999999999899999999987 3311 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHH-----cCCcE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQ-----SGADI 159 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~-----~~~~~ 159 (378)
++...+.+... .+...|+++|...+. ....++|++++||++.+.||.+++++|+. +++.|
T Consensus 97 ~~~~v~ti~s~----------~~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iM 161 (673)
T KOG1461|consen 97 MSFIVVTICSG----------ESRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIM 161 (673)
T ss_pred ccceEEEEcCC----------CcCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceE
Confidence 22112233221 124688888876432 34479999999999999999999999964 46789
Q ss_pred EEEEeecCCCCCCcceEEEEC-CCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 160 TISCLPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
||++.+........--.+.+| .+.++..+.+-... ...++++.++|..++ +.....++.+++|-+|+++++. ++.
T Consensus 162 Tmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~s-LF~ 237 (673)
T KOG1461|consen 162 TMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLS-LFT 237 (673)
T ss_pred EEEEeccccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHH-Hhh
Confidence 999988742212333444555 45788888762211 134566667776553 3445678999999999999995 555
Q ss_pred hhCCC--CCchhcccccccccccceEEEEecc--eEEecCCHHHHHHHHHhcccCC-----CCccccC------------
Q 017030 239 WRFPT--ANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHP-----PMFSFYD------------ 297 (378)
Q Consensus 239 ~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~--~~~~i~t~~~~~~a~~~~l~~~-----~~~~~~~------------ 297 (378)
+.++. ..+|.+.+|.+-+-+.+|+++.... |..++.+++.|...++++++|. |...+.+
T Consensus 238 dNFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IY 317 (673)
T KOG1461|consen 238 DNFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIY 317 (673)
T ss_pred hcccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccc
Confidence 55443 4456666666666688999998875 8999999999999999999884 2221111
Q ss_pred --CC------CcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeee
Q 017030 298 --AT------KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKC 367 (378)
Q Consensus 298 --~~------~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~ 367 (378)
++ +.+..++.|+.++.| .++.|.||+||+||+|| ++.|++|.||.||+||+||+|++|||+++|+|++||
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~ 397 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGA 397 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCc
Confidence 12 222334445555555 48899999999999999 999999999999999999999999999999999999
Q ss_pred ee-eeeeE
Q 017030 368 SS-LCSVI 374 (378)
Q Consensus 368 ~~-~~~~~ 374 (378)
++ +++|+
T Consensus 398 ~l~~g~vl 405 (673)
T KOG1461|consen 398 ILKPGSVL 405 (673)
T ss_pred ccCCCcEE
Confidence 99 66665
No 16
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.4e-42 Score=333.77 Aligned_cols=318 Identities=20% Similarity=0.221 Sum_probs=245.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++++|||||||.|+||++ ..||+|+|++|+ |||+|+++++.++|++++++++++..+++.+++.+.. .
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~------~- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG------D- 69 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC------c-
Confidence 4578999999999999984 689999999999 9999999999999999999999999888888875311 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-E-EecCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~-~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+.++. +.. .+||+++++.+++++++. .++|++++||. + ...++.++++.|.+.+++++++.
T Consensus 70 ----i~~~~--~~~-------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 70 ----VSFAL--QEE-------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ----eEEEe--cCC-------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 22222 111 369999999999998631 37899999998 3 35668999999988888888888
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.++ +..||.+.+|++++|.++.|||.....+ ..++++++|+|+|++++|.++++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 77755 4679999898889999999987432110 0135789999999999876666543221
Q ss_pred ---CCchhccccccccccc-ceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccCCCC-cEEccCCCCC
Q 017030 244 ---ANDFGSEIIPASANEQ-FLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLP 310 (378)
Q Consensus 244 ---~~~~~~~~l~~l~~~~-~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~~~~-~i~~~~~i~~ 310 (378)
...+..++++.+++++ ++.+|.+++| |.+++||++|++|++.++... ....+++++. .+...+.|++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~ 273 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGR 273 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcC
Confidence 1233467888888764 7999999987 999999999999988665432 1222455543 3556666777
Q ss_pred Ccee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 311 ~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++.| .++.|. +++||+||.|+ ++.|.+|+||++|+|++++.|.+|+|++++.|+.+|++.
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~ 336 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLR 336 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEEC
Confidence 7777 566664 68889999998 888889999999999999999888888888888777664
No 17
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-41 Score=305.61 Aligned_cols=316 Identities=22% Similarity=0.245 Sum_probs=240.9
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.+||||||.||||+ +++||.|.|++|+ ||++|+++.+...+.+++.++++|..+++++.+.+.. ...|
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~v~~- 71 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----DVEF- 71 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----CceE-
Confidence 35789999999999999 8899999999999 9999999999999999999999999999998885421 1111
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
++ |.+ ++||++|++++++++.+. .++++||++||+ ++..+ ++++++.|...++.+|++..
T Consensus 72 -----v~---Q~e-------qlGTgHAV~~a~~~l~~~---~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 72 -----VL---QEE-------QLGTGHAVLQALPALADD---YDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred -----EE---ecc-------cCChHHHHHhhhhhhhcC---CCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 22 332 479999999999999331 145799999999 66666 88899999999999999999
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
..++ |..||.+..+++|+|..+.|..+....+ . .-..+|+|+|+|+.+.|.++|.+.. ..
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~ee---------------k--~I~eiNtGiy~f~~~~L~~~L~~l~-nn 193 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEEE---------------K--QIKEINTGIYAFDGAALLRALPKLS-NN 193 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHHH---------------h--cCcEEeeeEEEEcHHHHHHHHHHhc-cc
Confidence 9887 8999999999899999999987764321 1 1246899999999998888888763 34
Q ss_pred Cchhccccccccc-----ccceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccCC-------CCcEEc
Q 017030 245 NDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-------TKPIYT 304 (378)
Q Consensus 245 ~~~~~~~l~~l~~-----~~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~~-------~~~i~~ 304 (378)
+...+++|+++++ +.++.++..+.+ ..-+|+..++.++++.+.++. .++.+++| +..+..
T Consensus 194 NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~ 273 (460)
T COG1207 194 NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGR 273 (460)
T ss_pred cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECC
Confidence 5556778888764 467888888755 578999999999998887663 23333333 222223
Q ss_pred ------------cCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeee
Q 017030 305 ------------SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 305 ------------~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
++.|+.++.| .++.|+||.||+||.|. .+.+++|.|+++|.||+.++|+. |.|+++++||.=|-+
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv 353 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV 353 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE
Confidence 3333334444 46778888888888888 48888888888776666666664 555555555544433
No 18
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-40 Score=322.52 Aligned_cols=322 Identities=21% Similarity=0.234 Sum_probs=223.2
Q ss_pred CccccccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC
Q 017030 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (378)
Q Consensus 1 ~~~~~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~ 80 (378)
|.... ++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++++++...
T Consensus 1 ~~~~~-~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---- 71 (481)
T PRK14358 1 MTEQT-RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS---- 71 (481)
T ss_pred CCccc-CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----
Confidence 34444 589999999999999986 489999999999 999999999999999999999999888888877421
Q ss_pred CCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCc
Q 017030 81 SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGAD 158 (378)
Q Consensus 81 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~ 158 (378)
+ +.++.. . .+.||+++++.+++++... .++|++++||. ++ ..++.+++++|.+++++
T Consensus 72 -~-------i~~v~~--~-------~~~Gt~~al~~~~~~l~~~----~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 72 -G-------VAFARQ--E-------QQLGTGDAFLSGASALTEG----DADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred -C-------cEEecC--C-------CcCCcHHHHHHHHHHhhCC----CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 1 233321 1 1369999999999888521 35799999998 33 45599999999999999
Q ss_pred EEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
+|+++.+.++ +..||.+..|++++|.+|.|||...... ..++++++|+|+|+++++ ++++
T Consensus 131 ~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~ 190 (481)
T PRK14358 131 MTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELAR 190 (481)
T ss_pred EEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHH
Confidence 9999888775 5679999999889999999998743210 012468999999997653 2333
Q ss_pred hhCC---CCCchhccccccccccc-ceEEEEecceEEecCCHHHHHHHHHh-cccCC--------------CCcc-----
Q 017030 239 WRFP---TANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP--------------PMFS----- 294 (378)
Q Consensus 239 ~~~~---~~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~~~~~a~~~-~l~~~--------------~~~~----- 294 (378)
...+ ....+..|+++.+++++ ++++|.+.++|..++.-.+|..++++ +++.. +...
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 3211 11223457888888765 69999999988888777766555543 33221 1110
Q ss_pred -------ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEe
Q 017030 295 -------FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRI 364 (378)
Q Consensus 295 -------~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~ 364 (378)
.+.+.+.|.+.+.|++++.| .++.|.+|+||++|.|+ ++.|.+++||+++.||+++.|. +++|++++.|+
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig 350 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIG 350 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEEC
Confidence 11112222223333444444 35566667777777776 6666667777777777776665 46666666666
Q ss_pred eeeeeeee
Q 017030 365 WKCSSLCS 372 (378)
Q Consensus 365 ~~~~~~~~ 372 (378)
+.+.+..+
T Consensus 351 ~~~~i~~~ 358 (481)
T PRK14358 351 NFVETKNA 358 (481)
T ss_pred CCEEECCc
Confidence 65554433
No 19
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.4e-40 Score=320.80 Aligned_cols=314 Identities=16% Similarity=0.199 Sum_probs=221.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
..++.|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|++++++++++..+++.+++.... .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~---- 70 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---P---- 70 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---C----
Confidence 3568999999999999986 589999999999 9999999999999999999999988888887775311 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~ 163 (378)
. +.++. +. .+.||+++++.++.++... ..++|++++||. ++. .++.++++.|++.+++++++.
T Consensus 71 --~-~~~~~--~~-------~~~Gt~~si~~al~~l~~~---~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 71 --E-VDIAV--QD-------EQPGTGHAVQCALEALPAD---FDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred --c-cEEEe--CC-------CCCCcHHHHHHHHHHhccC---CCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1 22221 11 1369999999999988531 146799999998 444 458999999988888888887
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.++ +..||.+..+++++|.++.|||.....+ ....++++|+|+|++++|.+++++..+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 77665 6779998888889999999998753211 0124689999999999997776654322
Q ss_pred ---CCchhccccccccccc-ceEEEEecceEEecCCHHHH------HHHHHhcccCC--CCcc-----------------
Q 017030 244 ---ANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSF------FEANLALTAHP--PMFS----------------- 294 (378)
Q Consensus 244 ---~~~~~~~~l~~l~~~~-~i~~~~~~~~~~~i~t~~~~------~~a~~~~l~~~--~~~~----------------- 294 (378)
...+..|+++++++.+ ++++|.+++||.|++++++| ..+++.+++.. ....
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 1233468888888765 79999999999999999888 55555544331 1111
Q ss_pred --ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEe
Q 017030 295 --FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRI 364 (378)
Q Consensus 295 --~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~ 364 (378)
.+++.+.+...+.|+++|.| .++.|.+|+||+||.|+++.+.+|+|+++++||+++.+. +++|+++++++
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig 350 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLG 350 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEEC
Confidence 12222333334444444444 356666666666666665556666666666666666664 45555444444
No 20
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=3.6e-40 Score=300.48 Aligned_cols=244 Identities=18% Similarity=0.270 Sum_probs=189.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccC------
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY------ 79 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~------ 79 (378)
|..|+|||||||.||||+|+|.++||||+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+...+.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999999 999999999999999999999999999999998643211
Q ss_pred ----------CCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe-------
Q 017030 80 ----------GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (378)
Q Consensus 80 ----------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~------- 142 (378)
..+..++.. +.++ .|. .++||++|++.++++++ +++|+|++||.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-i~~~--~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVT-IMNV--RQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCCce-EEEe--eCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 001112211 2222 232 25799999999999986 37899999999987
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE----CCCCC---EEEEEecCCccchhcccccchhcccccccc
Q 017030 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI----NNEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 143 -~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~----d~~~~---v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
.++.+++++|.++++.++++....++ +..||++.. |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~~~~~~~--~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLAKRMPGD--LSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEEEEcCCC--CccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 48899999998777766444333323 688999998 44564 5899999864321
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHhhhCCCC-C-chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLRWRFPTA-N-DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-~-~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
..++++++|+|+|++++|+ .++...+.. . ....++++.++++++++++.++|+|+|+|+|++|++||..+.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1246899999999999986 445432221 1 123478889999999999999999999999999999998863
No 21
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=1.6e-39 Score=297.05 Aligned_cols=246 Identities=18% Similarity=0.273 Sum_probs=192.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~----- 80 (378)
|..|+|||||||.||||+|+|..+||||+||+|| |||+|+++++.++|+++|+|++++..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999996433110
Q ss_pred -----------CCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe-------
Q 017030 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (378)
Q Consensus 81 -----------~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~------- 142 (378)
....++ +.+....|.+ ++||++|++.+++++. +++|+|++||.+++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 1222223322 4799999999999985 37899999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEEC----CCC---CEEEEEecCCccchhcccccchhcccccccc
Q 017030 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 143 -~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
.|+.+++++|.+.+++++++....+ .+..||.+..| ++| +|.++.|||.....
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4799999999888877554443333 36889999986 355 78999999864310
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhc-ccC
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TAH 289 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~-l~~ 289 (378)
..++++++|+|+|++++|..+. ...+. ......++++.+++++++.+|.++|+|+|+|+|++|++|+.++ ++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~-~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELE-RTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHH-hCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 1246899999999999987553 32222 1123357888899999999999999999999999999999998 544
No 22
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-39 Score=315.79 Aligned_cols=317 Identities=18% Similarity=0.210 Sum_probs=230.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|++|+|||||||.|+||+ ..+||+|+|++|+ |||+|+++.+.++|++++++++++..+++++++... +
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 557999999999999998 4689999999999 999999999999999999999998888888776421 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
+.++. +.. ..||+++++.++.++.+ .++|++++||. +.+.++.++++.|.+.+ +++++
T Consensus 71 ----~~~i~--~~~-------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVL--QAE-------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEE--CCC-------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22221 111 25999999999988753 47899999998 44566899998886544 45566
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+.++ +..||.+.. ++++|.+|.|||.....+ ..++++++|+|+|+++.|.++++...+.
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66554 567999755 578999999998642210 0135789999999999887777654321
Q ss_pred ---CCchhcccccccccc-cceEEEE------ecce--EEecCCHHHHHHHHH--hccc-C----CCC------------
Q 017030 244 ---ANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTA-H----PPM------------ 292 (378)
Q Consensus 244 ---~~~~~~~~l~~l~~~-~~i~~~~------~~~~--~~~i~t~~~~~~a~~--~~l~-~----~~~------------ 292 (378)
...+..|+++.++++ .++.+|. +.|| |.|++++++|+++++ .++. . .+.
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 223456888888876 5788886 4566 678999999999984 2221 1 111
Q ss_pred ccccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 293 FSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 293 ~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
-..+.+.+.+...+.|++++.| .++.|++|+||++|.|+ ++.+.+|+|+++++||+++.|. ++.++++++|++++.|
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 1133344555555666666666 56777788888888888 7888888888888888888886 6777777777777666
Q ss_pred eeeeE
Q 017030 370 LCSVI 374 (378)
Q Consensus 370 ~~~~~ 374 (378)
..+++
T Consensus 351 ~~~~i 355 (456)
T PRK09451 351 KKARL 355 (456)
T ss_pred eceee
Confidence 54443
No 23
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=7.5e-39 Score=312.50 Aligned_cols=319 Identities=17% Similarity=0.183 Sum_probs=227.4
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++++|++++..+.+.+++...
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 4899999999999997 5789999999999 999999999999999999999998888777665321
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.++++.... +.||+++++.+++++++.. .+++++++||+ ++. .++.++++.|. +++++++..+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~~~---~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTAAG---LDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhhcC---CCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 122322111 3699999999999886321 47899999999 454 44888888775 6678888887
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC---
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~--- 242 (378)
.++ +..||.+.. ++|+|..+.||++...... ...+.++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 765 567998877 5789999999886431100 0013568999999999998766654322
Q ss_pred CCCchhcccccccccc-cceEEEEecc--eEEecCCHHHHHHHHHhcccCCC------C-------ccccCC------CC
Q 017030 243 TANDFGSEIIPASANE-QFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP------M-------FSFYDA------TK 300 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~-~~i~~~~~~~--~~~~i~t~~~~~~a~~~~l~~~~------~-------~~~~~~------~~ 300 (378)
....+..++++.++.. .++.++.+.+ +|.+|+||+||.+|+..+..+.. + ...+++ +.
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 1122335677776654 4799998865 57999999999999877764421 0 111122 22
Q ss_pred cEE------ccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 301 PIY------TSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 301 ~i~------~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.+. +.+.|++++.| .++.|.+|+||+||.|+ ++.|.+|+||++|+||++++|. +++|+++++|+++|.+..
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeee
Confidence 222 23344455555 46677778888888887 7778888888888888888886 577777777777776655
Q ss_pred eeE
Q 017030 372 SVI 374 (378)
Q Consensus 372 ~~~ 374 (378)
|++
T Consensus 357 ~~i 359 (456)
T PRK14356 357 AVL 359 (456)
T ss_pred eEe
Confidence 554
No 24
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=6.1e-39 Score=313.09 Aligned_cols=310 Identities=20% Similarity=0.219 Sum_probs=214.9
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++++|+++++.+.+.+++.+. +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~---------~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR---------D-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC---------C--
Confidence 7899999999999996 689999999999 999999999999999999999999888888877531 1
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEe-cCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~-~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++.... +.|++++++.++++++. .++|++++||. ++. .++.++++.|.+. .+++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22221111 25899999999998853 36899999998 444 4588999988664 467777666
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 243 (378)
++ +..|+.+..|++++|..+.|||....... ..+.+++|+|+|++++|.++++...+.
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~~-----------------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQK-----------------AIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHHh-----------------cCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 56699988888899999999876432100 124679999999999976666653221
Q ss_pred CCchhcccccccccc-cceEEEEecce--EEecCCHHHHHHHHHhcccCCC------Cc-------------------cc
Q 017030 244 ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHPP------MF-------------------SF 295 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~~------~~-------------------~~ 295 (378)
...+..++++.++.. .++++|.++++ |.++++|++|.+++..+..+.. +. ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 112335777888766 47999999988 8999999999888765543210 00 11
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
+++.+.+...+.|++++.| .++.|.+|+||+||.|+ ++.|.+|+|+++|+||+++.|. +++|+++++|+++|.+
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i 346 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVET 346 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceee
Confidence 2222233333344444444 34555666666666666 5666666666666666666665 3555555555554433
No 25
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=3.7e-39 Score=289.88 Aligned_cols=239 Identities=37% Similarity=0.654 Sum_probs=190.1
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEe-ecChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~-~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
||||||||.||||+|+|.+.||||+|++|++|||+|+|+++.++|++++++++ ++..+++.+|++... .++..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGVK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------ccccc
Confidence 69999999999999999999999999999989999999999999999965555 577888999986532 23211
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCc--EEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGAD--ITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~--~ti~~~~~ 166 (378)
+.++. |.. ..||++||+.+..++... ...++|++++||++++.++.++++.|.+++++ +++...+.
T Consensus 75 -i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 75 -IEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp -EEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred -ceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 33332 222 259999999999999751 00134999999999999999999999999884 45555544
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHh--hhCCCC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTA 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~--~~~~~~ 244 (378)
. .++.||++..|++|+|.++.|||..... ++++++|+|+|++++|..+++ +.....
T Consensus 143 ~--~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~ 200 (248)
T PF00483_consen 143 E--DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARG 200 (248)
T ss_dssp S--GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTS
T ss_pred c--ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchh
Confidence 4 3788999999988999999999986531 368999999999999976654 212234
Q ss_pred Cchhcccccccccccc-eEEEEecc--eEEecCCHHHHHHHHHhccc
Q 017030 245 NDFGSEIIPASANEQF-LKAYLFND--YWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~~-i~~~~~~~--~~~~i~t~~~~~~a~~~~l~ 288 (378)
..+..++++.+++++. +.++.+++ +|+|||||++|++|++++++
T Consensus 201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 5566789999988774 56778888 79999999999999999875
No 26
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=9.7e-39 Score=284.28 Aligned_cols=232 Identities=26% Similarity=0.423 Sum_probs=193.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|++||||||.|+||+|+|.+.||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.. ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~-----~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYE-----KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccc-----ccCC--
Confidence 7899999999999999999999999999999 9999999999999999999999999999999886321 1122
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+.++...+.. ..|++++++.++.++... .++|++++||++++.++.+++++|+++++++|+++.+.++
T Consensus 73 -~~i~~~~~~~-------~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIETE-------PLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCCC-------CCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 2232222221 369999999999988531 3689999999999999999999999999999999988764
Q ss_pred CCCCcceEEEECC-CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 169 SRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 169 ~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
+..||++..|+ +++|.++.|||.... ++++++|+|+|++++|+.+ .. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 56899999987 789999999986432 3578999999999999654 32 12234
Q ss_pred hcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
..++++.+++++++.+|.++|+|.||+||++|++|++.+|
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999998764
No 27
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=9.2e-39 Score=288.47 Aligned_cols=235 Identities=26% Similarity=0.407 Sum_probs=191.3
Q ss_pred EEEEcCC--CCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC
Q 017030 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 11 avIla~G--~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
||||||| .||||+|+|..+||||+||+|+ |||+|+++++.+ +|+++|+|++++..+++.+|+.+.. ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-----~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-----QEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-----cccCc
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999986431 11121
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. +.++ .+.. ..||+++++.++++++.. ..++|+|++||++++.|+.+++++|+++++++|+++.+.+
T Consensus 75 ~-i~~~--~~~~-------~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 P-IRYL--QEYK-------PLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred e-EEEe--cCCc-------cCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1 2222 2221 369999999999988531 1368999999999999999999999999999999998875
Q ss_pred CCCCCcceEEEEC-CCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---
Q 017030 168 DSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (378)
Q Consensus 168 ~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 243 (378)
...+..||++..| ++|+|.++.|||.... ++++++|+|+|++++|+.+ ....+.
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccc
Confidence 4446789999988 6789999999986432 3578999999999998544 332221
Q ss_pred ---------------CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 244 ---------------ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 244 ---------------~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
..++..++++.+++++++++|.++|||.||+|+++|.+||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1234468899999989999999999999999999999999864
No 28
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-38 Score=304.75 Aligned_cols=304 Identities=20% Similarity=0.263 Sum_probs=223.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|+++|||||||.|+||+| .+||+|+|++|+ |||+|+++.|.++ +++|+|++++..+++.+++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 458899999999999986 699999999999 9999999999986 78999999999999998886432 11
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++..... .+.||+++++.+.. . .++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~---~-----~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP---K-----HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc---C-----CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 233321111 13689999976421 1 48999999998332 2244555666677888888877
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--- 243 (378)
++ +..||.+..+ +|++.++.|++...... ...++.++|+|+|++++|.++++.....
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 5568988775 68999999987542200 0125689999999999997765543211
Q ss_pred CCchhcccccccccc-cceEEEEec-ceEEecCCHHHHHHHHHhcccCCC-------------CccccCCCCcEEccCCC
Q 017030 244 ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRN 308 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~~~-------------~~~~~~~~~~i~~~~~i 308 (378)
...+..++++.+++. .++.++.++ ++|.||++|+||.+|+..++.+.. ...++.++..+...+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 122335667777665 679999887 589999999999999876654321 11234455666667777
Q ss_pred CCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 309 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 309 ~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
++++.| .++.+++|+||++|.|+++.|+||+||++++|++++.|.+|+|++++.
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~ 323 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVE 323 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEE
Confidence 888888 678888888888888887788888888888888888888888877773
No 29
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-37 Score=301.54 Aligned_cols=321 Identities=18% Similarity=0.201 Sum_probs=223.8
Q ss_pred cccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
+|+++.|||||||.|+||++ ..||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~------- 70 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA------- 70 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-------
Confidence 46779999999999999983 589999999999 9999999999999999999999998888888774311
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.. +.++. +. ...|++++++.++.+++.. .++|++++||. +++.+ +..+++ |.+.++++++.
T Consensus 71 --~~-~~~~~--~~-------~~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 71 --PD-AEIFV--QK-------ERLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred --CC-ceEEE--cC-------CCCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 01 11111 11 1359999999999888521 37899999998 55554 777777 44566778887
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
..+..+ +..||.+.. ++++|.++.|||...... ..+.++++|+|+|+++.|.+++++...
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777654 567888877 568999999998643210 012468999999999877667665422
Q ss_pred C---CCchhcccccccccc-cceEEEEec-ceEEecCCHHHHHHHHHhcccC-------------CCCccc------cCC
Q 017030 243 T---ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAH-------------PPMFSF------YDA 298 (378)
Q Consensus 243 ~---~~~~~~~~l~~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~-------------~~~~~~------~~~ 298 (378)
. ...+..+.++.+++. .+++++..+ ++|.+|+||+||..|+..+..+ .+...+ +++
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 122345677787765 469999886 5699999999999998644221 011111 222
Q ss_pred CCcEEccCCCCCCcee-------eCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 299 TKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-------~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+..+.+.+.|++++.| .++.|.+|+||++|+|| ++.|. +|+||++|+||+++.|.+++|+++++++..+.+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i 353 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI 353 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE
Confidence 2233333333333333 24455678888888888 77776 788888888888888888888877665544444
Q ss_pred eeee
Q 017030 370 LCSV 373 (378)
Q Consensus 370 ~~~~ 373 (378)
..++
T Consensus 354 ~~~~ 357 (446)
T PRK14353 354 GDAT 357 (446)
T ss_pred cCcE
Confidence 3333
No 30
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=1.4e-37 Score=282.81 Aligned_cols=235 Identities=24% Similarity=0.420 Sum_probs=187.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|..|+|||||||.||||+|+|..+||||+||+|| |||+|+|+.|..+|+++|+|++. +..+.+++++. ++..
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~------~g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc------Cccc
Confidence 4579999999999999999999999999999999 99999999999999999998764 45566777763 3445
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-EecCHHHHHHHHHHcCCcEEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~d~~~~l~~h~~~~~~~ti~~ 163 (378)
|+... .+. .|.. +.|+++|+..+.+++.+ ++++++.||.+ ++.|+.++++.|.++++++|+++
T Consensus 74 ~g~~i-~y~--~q~~-------~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLNL-QYK--VQPS-------PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCcee-EEE--ECCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 65432 222 2322 46999999999999853 56889999975 57889999999988888999998
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.++++ ++.||++..|++|+|+++.|||..+. ++++++|+|+|++++++ .++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCC
Confidence 88765 67899999998899999999986432 46899999999999885 44443232
Q ss_pred C-Cc-hhcccccccccccceEE-EEecce-EEecCCHHHHHHHHHhcc
Q 017030 244 A-ND-FGSEIIPASANEQFLKA-YLFNDY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 244 ~-~~-~~~~~l~~l~~~~~i~~-~~~~~~-~~~i~t~~~~~~a~~~~l 287 (378)
. .+ ...++++.+++++++.+ +..+|+ |.|+|||++|.+|+..+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 1 11 12577888888777644 456785 999999999999998775
No 31
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-37 Score=302.38 Aligned_cols=319 Identities=22% Similarity=0.241 Sum_probs=230.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|+++|||||||.|+||+ ..+||+|+|++|+ |||+|+++++.++|++++++++++..+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 46799999999999998 3689999999999 999999999999999999999999888888776321
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++. +.. ..|++++++.+++++++. .++|++++||. ++ ..++.++++.|.+.++++|+++.
T Consensus 67 ---~~~~~--~~~-------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFAL--QEE-------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEE--cCC-------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11211 111 268999999999988531 26799999997 44 45589999999888888888887
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~- 243 (378)
..++ +..|+.+..|++++|.++.|||...... ...+++++|+|+|+++.|.+.+++..+.
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7654 5668888888889999999987532100 0135689999999998665666543221
Q ss_pred --CCchhcccccccccc-cceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccccC---------------
Q 017030 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYD--------------- 297 (378)
Q Consensus 244 --~~~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~~~--------------- 297 (378)
......++++.+++. .++++|.++++ |.++++++||..|+..+..+. +...+++
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 112234667777654 57999999876 567779999998876443211 1111122
Q ss_pred ----CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 298 ----ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 298 ----~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
+.+.+...+.|++++.| .++.|.+|+||+||.|+++.+.+|+||++|+||++|.|. +++|+++++|+.+|.+..
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 351 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKK 351 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEee
Confidence 22223334444555555 467777888888888886777888888888888888888 688888888877777655
Q ss_pred eeE
Q 017030 372 SVI 374 (378)
Q Consensus 372 ~~~ 374 (378)
+++
T Consensus 352 ~~i 354 (458)
T PRK14354 352 STI 354 (458)
T ss_pred eEE
Confidence 443
No 32
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.7e-37 Score=299.18 Aligned_cols=308 Identities=20% Similarity=0.219 Sum_probs=222.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+++++.+.+ ++|+|++++..+.+.+++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999984 689999999999 99999999999875 89999999888778777632 1
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
+.++. +.. .+|++++++.+++++++ .++|++++||. +...++.++++.|.++++++|+++.+.
T Consensus 64 -~~~~~--~~~-------~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QEE-------QLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cCC-------CCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 11221 111 36999999999998853 47999999997 445668999999998899999999887
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (378)
++ +..||.+..+ ++++ .+.||+...... ...+++++|+|+|++++|.+++++..+..
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 65 6779998887 6788 788876432110 01257899999999999877666432211
Q ss_pred -CchhcccccccccccceEEEEecce--EEecCCHHHHHHHHHhcccC------CCCcc-------ccC-----------
Q 017030 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAH------PPMFS-------FYD----------- 297 (378)
Q Consensus 245 -~~~~~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~------~~~~~-------~~~----------- 297 (378)
..+..|+++.+ .++.+|.+.+| |.+++++++|..+...+... ..... +++
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 11223555555 35888888888 66777999998876554221 01111 222
Q ss_pred -CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 298 -ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 298 -~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
+.+.|.+++.|++++.| .++.|.+|+||+||.|.++.+.+|+|+++++||++++|.. ++|+++++|+++|.+..+
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~ 342 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKS 342 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeecc
Confidence 22333334455555555 4677778888888888767788888888888888888854 888888888887766443
No 33
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=3.8e-37 Score=275.24 Aligned_cols=231 Identities=25% Similarity=0.398 Sum_probs=185.4
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecC-hhhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|++++++. .+++.+|+.. +..|+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~~ 73 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLGI 73 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccCc
Confidence 7899999999999999999999999999999 9999999999999999999988654 4678888753 233432
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
. +....+.. ..|++++++.++++++ .++|++++||.++ +.++.+++++|.++++++|+++.+.
T Consensus 74 ~---i~~~~~~~-------~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 74 R---ITYAVQPK-------PGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred e---EEEeeCCC-------CCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2 22222221 3699999999999885 3789999999854 6679999999988888999998887
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-CC
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AN 245 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~ 245 (378)
++ ++.||.+..|++|+|.++.|||.... +.++++|+|+|++++|+ .+++..+. ..
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCC
Confidence 65 56799999998899999999986432 25789999999999884 55543221 11
Q ss_pred c-hhcccccccccccceEEEEec--ceEEecCCHHHHHHHHHhc
Q 017030 246 D-FGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 246 ~-~~~~~l~~l~~~~~i~~~~~~--~~~~~i~t~~~~~~a~~~~ 286 (378)
+ ...++++.+++++++.++.++ |+|.|||||++|.+|++.+
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 1 224788888888888888776 9999999999999999865
No 34
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=3.3e-37 Score=280.07 Aligned_cols=231 Identities=25% Similarity=0.434 Sum_probs=185.8
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEee-cChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+|||||||.||||+|+|..+||+|+||+|| |||+|+|+.+..+|+++|+|+++ +..+.+++++. ++..|+.+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg------~g~~~g~~ 73 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQWGVN 73 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc------cccccCce
Confidence 589999999999999999999999999999 99999999999999999998874 56667777763 34456543
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
. .+..|.. +.||++|+..+.++++ .++++++.||. +++.++.++++.|.++++++|+++.+++
T Consensus 74 i---~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 74 L---SYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred E---EEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2 2222322 4799999999999996 37889999997 4577899999999888889999998887
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC-CCc
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND 246 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~-~~~ 246 (378)
+ ++.||++..|++|+|.++.|||..+. ++++++|+|+|++++++ .++...+. ..+
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 67899999998899999999986432 36789999999999875 55543332 122
Q ss_pred -hhcccccccccccceEEEEe-cce-EEecCCHHHHHHHHHhcc
Q 017030 247 -FGSEIIPASANEQFLKAYLF-NDY-WEDIGTIRSFFEANLALT 287 (378)
Q Consensus 247 -~~~~~l~~l~~~~~i~~~~~-~~~-~~~i~t~~~~~~a~~~~l 287 (378)
...++++.+++++++.++.+ .|+ |.|+|||++|++|+..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 22478888888877766665 576 999999999999998664
No 35
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=7.8e-37 Score=274.68 Aligned_cols=234 Identities=26% Similarity=0.365 Sum_probs=189.4
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC--C
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--D 87 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~--~ 87 (378)
+|||||||.|+||+|+|.++||||+||+|+ |||+|+++.+.++|+++|+|++++..+++.+++.+....+.+..+. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 8999999999999999999999999999999986422111111110 0
Q ss_pred c------------eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHc
Q 017030 88 G------------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (378)
Q Consensus 88 ~------------~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~ 155 (378)
. .+.+. .+ ..++||+++++.++++++ .++|++++||++++.|+.+++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLV--DT-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeee--ec-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 01111 11 124799999999999885 379999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHH
Q 017030 156 GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235 (378)
Q Consensus 156 ~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~ 235 (378)
++++|++..+ + +..||.+..|+ ++|+++.|||... +.++++|+|+|++++| +
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9999987653 2 56799999975 6999999998532 2478999999999998 4
Q ss_pred HHhhhCCCCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 236 ~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.++.. ..++..++++.++.++++++|.++|||.||+||++|.+++..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55432 23556789999999999999999999999999999999999887653
No 36
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=4.3e-36 Score=274.87 Aligned_cols=245 Identities=22% Similarity=0.335 Sum_probs=190.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCC---
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG--- 82 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--- 82 (378)
.+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+++++.++|+++|+|++++..+++.+|+...+.++..
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 3459999999999999999999999999999999 999999999999999999999999999999998643211100
Q ss_pred ---cccCCc-------eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe--------cC
Q 017030 83 ---VTFGDG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--------MD 144 (378)
Q Consensus 83 ---~~~~~~-------~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~--------~d 144 (378)
..+..+ ...+.+..|. .+.||++|++.+..++. +++|+|++||.+++ .+
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccccc
Confidence 000000 0111111222 24799999999998875 37899999999875 68
Q ss_pred HHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECC-------CCCEEEEEecCCccchhcccccchhccccccccccC
Q 017030 145 YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (378)
Q Consensus 145 ~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (378)
+.+++++|.+++++ |+++.+.++ +..||++..++ +++|.++.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999888876 677777754 67899998763 3579999999974321 2
Q ss_pred cceeeeeEEEEeHHHHHHHHhhhCCC--CCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 218 PYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 218 ~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
++++++|+|+|++++| +.++...+. ...+..++++.+++++++.+|.++|+|.|||||++|++|+.++-
T Consensus 210 s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 3679999999999998 456553222 22334688899998889999999999999999999999999874
No 37
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=5.4e-36 Score=272.11 Aligned_cols=242 Identities=23% Similarity=0.299 Sum_probs=186.1
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----CCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (378)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999999 9999999999999999999999999999999985432110 000
Q ss_pred c----------cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec---CHHHHHH
Q 017030 84 T----------FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQ 150 (378)
Q Consensus 84 ~----------~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~---d~~~~l~ 150 (378)
. .+. .+.+. .+. .+.||+++++.++.+++ .++|++++||.++.. ++.++++
T Consensus 80 ~~~~~~~~~~~~~~-~i~~~--~~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 80 TDLLEEVRIISDLA-NIHYV--RQK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred HHHhhhhhcccCCc-eEEEE--EcC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHH
Confidence 0 011 12121 121 23699999999999885 378999999997764 4899999
Q ss_pred HHHHcCCcEEEEEeecCCCCCCcceEEEECC----CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 151 NHRQSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 151 ~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
.|.+++++ ++++.+.+...+..||.+..|+ .++|.++.|||..... .+.++++|+|
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giy 203 (267)
T cd02541 144 AYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRY 203 (267)
T ss_pred HHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEE
Confidence 99877765 4555555543467899999885 2489999999864211 2357899999
Q ss_pred EEeHHHHHHHHhhhCC-CCCchhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 227 LFKKEILLNLLRWRFP-TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
+|++++|..+.+.... ....+..++++.+++++++++|.++|||.||+||++|++||+++.
T Consensus 204 i~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 204 VLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999998655331111 112233577888988889999999999999999999999999874
No 38
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=289.77 Aligned_cols=312 Identities=19% Similarity=0.247 Sum_probs=225.5
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+.+++|++++..+++.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6799999999999985 689999999999 9999999999999999999999988888888774310
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
.+.++.... +.|++++++.+++++++. .+++++++||. +...++.++++.|.+.+++++++..+.
T Consensus 67 ~i~~v~~~~---------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQP---------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeCC---------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 133332111 358999999998888531 36799999998 344568999999998888888877776
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA-- 244 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~-- 244 (378)
++ +..||.+..|++|+|.++.|||.....+ ..++++++|+|+|+++.|.+++++..+..
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 5669999998889999999998643210 12367899999999998877776543321
Q ss_pred -CchhcccccccccccceEEEEecce--EEecCCHHHHHHHHHhcccCC------CCccc-------------cC-----
Q 017030 245 -NDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSF-------------YD----- 297 (378)
Q Consensus 245 -~~~~~~~l~~l~~~~~i~~~~~~~~--~~~i~t~~~~~~a~~~~l~~~------~~~~~-------------~~----- 297 (378)
..+..+.++.+. .+.++...++ |..+++++++..+...+.... +...+ ++
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 112233444442 3566666665 456999999988876543221 11111 11
Q ss_pred -CCCcEEccCCCCCCcee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 298 -ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 298 -~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
+.+.+...+.+++++.| .++.|.+|+||+||+|+++.+.+|+|+++|.||++|.|. +++|+++++|+.++.+.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK 347 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe
Confidence 22334445556666666 567778888888888876677788888888888888886 57777777777777654
No 39
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=9.5e-36 Score=268.10 Aligned_cols=243 Identities=22% Similarity=0.332 Sum_probs=190.5
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC--Cc
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DG 88 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~--~~ 88 (378)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++.+.++|+++|+|+++|..+++.+|+.+....+....+. ..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 8999999999999999999999999999999987643111111111 00
Q ss_pred eEEEeccccCC---CcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEee
Q 017030 89 CVEVLAATQTP---GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 89 ~i~i~~~~~~~---~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
.+.+....... ....+....||+++++.+++++.+ .++|++++||++++.++.++++.|.+.++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 11222110000 000011136899999999998852 2789999999999999999999999999999987763
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
....||.+..|++|+|..+.|||... +.++++|+|+|++++++.+ ++. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cc
Confidence 25678999999889999999998643 1468999999999998543 332 33
Q ss_pred chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccC
Q 017030 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~ 289 (378)
++..++++.+++++++++|.++|+|.+|+|+++|.+|+..+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 45568999999999999999999999999999999999887554
No 40
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=1.4e-36 Score=274.92 Aligned_cols=240 Identities=20% Similarity=0.262 Sum_probs=182.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCC-----CCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (378)
|+|||||||.||||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred ccCC-------ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec---CHHHHHHHHH
Q 017030 84 TFGD-------GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (378)
Q Consensus 84 ~~~~-------~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~---d~~~~l~~h~ 153 (378)
.|.. ....+....+. .+.||+++++.+++++. .++|++++||.++.. ++.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 0000 00111111121 24799999999999884 478999999998764 6999999999
Q ss_pred HcCCcEEEEEeecCCCCCCcceEEEECC----CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEe
Q 017030 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (378)
Q Consensus 154 ~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~ 229 (378)
++++++ +++...+...+..||.+..|. +++|+.+.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888875 555555443467899998862 3699999999853211 2357899999999
Q ss_pred HHHHHHHHhhhCCCC-CchhcccccccccccceEEEEecceEEecCCHHHHHHH
Q 017030 230 KEILLNLLRWRFPTA-NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 230 ~~~l~~~l~~~~~~~-~~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
+++|..+.+...... .....++++.+++++++++|.++|||.|||||++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 999876543221111 12234778888888899999999999999999999875
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.2e-35 Score=262.30 Aligned_cols=219 Identities=21% Similarity=0.334 Sum_probs=179.9
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+. .|+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-------~~~~-- 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS-------RFGL-- 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc-------cCCc--
Confidence 589999999999999999999999999999 999999999999999999999999999999998641 2322
Q ss_pred EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHH--HcCCcEEEEEeecC
Q 017030 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (378)
Q Consensus 90 i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~--~~~~~~ti~~~~~~ 167 (378)
.+....+.. ...||+++++.++.+++ .++|++++||++++.++.++++.|. +.++.+|+...+.+
T Consensus 71 -~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 71 -RITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred -eEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 222222210 13699999999999885 3789999999999999999999998 46667777766654
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
. ...||.+..|++|+|..+.|+|.. +++++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 567899999888999999888742 367999999999998755321 122
Q ss_pred hcccccccccccceEEEEecceEEecCCHHHHHHH
Q 017030 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
..++++.+++++++.+|.++|+|.||+||++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 35788888988899999999999999999999875
No 42
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=7.8e-35 Score=259.80 Aligned_cols=232 Identities=26% Similarity=0.406 Sum_probs=188.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|+|||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++..+.+.+++.+.. .|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCCe
Confidence 7999999999999999999999999999999 9999999999999999999999998888998885432 23322
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+.++. +. .+.|++++++.++.++. .+++++++||.+++.++.++++.|.++++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22322 21 13699999999998885 3789999999999999999999999999999999888764
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~--~~~ 246 (378)
+..||.+..|+ ++|.++.|||.... +.++++|+|+|++++++.+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 56789888874 59999999986432 2468999999999998644 332221 112
Q ss_pred hhcccccccccc-cceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
...++++.++++ .++.++.++++|.+|+||+||.+|++.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 235778888865 469999999999999999999999999875
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=4.9e-34 Score=252.38 Aligned_cols=222 Identities=28% Similarity=0.487 Sum_probs=182.9
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++...+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888886422 12221 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.+... +. ..|++++++.+++++. .++|++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 73 ~~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 12111 11 3699999999998884 4899999999999889999999998888889988888754
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (378)
...|+.+..|++|+|..+.|||.... ++++++|+|+|++++|..+.+. ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 46789888988899999999876431 3578999999999998654221 2344567
Q ss_pred cccccccccceEEEEecceEEecCCHHHHHHH
Q 017030 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 251 ~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
+++.++.++++.+|.++++|.||+|++||..|
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 88888887799999999999999999999987
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=2e-33 Score=247.40 Aligned_cols=217 Identities=33% Similarity=0.592 Sum_probs=180.1
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+++...+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888875432 12221 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++. +.. +.|++++++.++.++. .++|++++||++++.++.++++.|.++++++|+++.+.+.
T Consensus 73 ~~~~--~~~-------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (217)
T cd04181 73 EYVV--QEE-------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED-- 135 (217)
T ss_pred EEEe--CCC-------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2222 211 2599999999998883 4899999999999999999999999999999999988763
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (378)
+..||.+..|++++|.++.|||.... +.++++|+|+|++++++ .++........+..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHH
Confidence 67899999998899999999986532 25789999999999884 555432223455678
Q ss_pred cccccccccceEEEEecceEEecC
Q 017030 251 IIPASANEQFLKAYLFNDYWEDIG 274 (378)
Q Consensus 251 ~l~~l~~~~~i~~~~~~~~~~~i~ 274 (378)
+++.++.+.++++|.++|+|.|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 899999889999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=4e-33 Score=246.13 Aligned_cols=219 Identities=25% Similarity=0.473 Sum_probs=175.9
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++..+++++|+.+. ..|+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~------~~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG------SKFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc------cccCcc-E
Confidence 69999999999999999999999999999 999999999999999999999999888888887542 223322 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++. +. .+.||++++..+.+.. .++|++++||.+++.++.++++.|.+.++++++++.+...
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2221 11 1368999998776544 3789999999999999999999999988899988877543
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCchhcc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 250 (378)
...||.+..|+ ++|.++.|||... .++++|+|+|++++++.+ +. .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 45699998875 8999999987532 467999999999998643 32 11112356
Q ss_pred cccccccc-cceEEEEecceEEecCCHHHHHHHH
Q 017030 251 IIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283 (378)
Q Consensus 251 ~l~~l~~~-~~i~~~~~~~~~~~i~t~~~~~~a~ 283 (378)
+++.++++ .++.+|+++++|.+++||+||.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 78888765 4699999999999999999999885
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-33 Score=241.40 Aligned_cols=249 Identities=22% Similarity=0.320 Sum_probs=200.1
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCC-----
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS----- 81 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~----- 81 (378)
+-++|||+|||.||||.|.|...||-||||.+| |+|+|+++.+.++|+++|++++++....+.+|++..+.+..
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKR 81 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHh
Confidence 457999999999999999999999999999999 99999999999999999999999999999999886653321
Q ss_pred Cc-cc----C--CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC---HHHHHHH
Q 017030 82 GV-TF----G--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQN 151 (378)
Q Consensus 82 ~~-~~----~--~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d---~~~~l~~ 151 (378)
++ .. . ...+.+.+..|.. ++|.|+|+++|+.++. +++|.|+.+|.++..+ +.++++.
T Consensus 82 ~K~~~L~~v~~i~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~~ 148 (291)
T COG1210 82 GKRELLEEVRSIPPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIEL 148 (291)
T ss_pred CHHHHHHHHHhcccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHHH
Confidence 11 00 0 0123333334443 5899999999999998 4899999999988753 7889998
Q ss_pred HHHcCCcEEEEEeecCCCCCCcceEEE----ECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 152 HRQSGADITISCLPMDDSRASDFGLMK----INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 152 h~~~~~~~ti~~~~~~~~~~~~~g~v~----~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
+.+.+.. .+.+.+++....+.||++. .+.+ .+|.++.|||....+ .|+++-.|-|
T Consensus 149 ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRY 208 (291)
T COG1210 149 YEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRY 208 (291)
T ss_pred HHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeeee
Confidence 8887764 5777788766688999997 3332 489999999977653 4689999999
Q ss_pred EEeHHHHHHHHhhhCCCCC--chhcccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 227 LFKKEILLNLLRWRFPTAN--DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~~~~--~~~~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
+|+|++|+ +|++..+... -...|.+..+++...+++|.++|..+|+|++..|.+|+.++..++
T Consensus 209 il~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 209 VLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred ecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 99999995 6676444321 123567777888899999999999999999999999999886554
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=5.2e-32 Score=238.15 Aligned_cols=205 Identities=18% Similarity=0.310 Sum_probs=158.1
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
++|||||||.|+||+|+|.++||||+||+|+ |||+|+++++.++|+++|+|+++++.+++++|+.+...++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 5899999999999999999999999999999 99999999999999999999999999999999976431111 11001
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHH-----cCCcEEE
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQ-----SGADITI 161 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~-----~~~~~ti 161 (378)
.+.+.. +.. +.|++++++... ..+ .++|++++||++++.|+.+++++|++ +++++|+
T Consensus 78 ~i~~~~--~~~-------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIM--SED-------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEe--CCC-------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 133332 211 357888886542 222 37899999999999999999999987 4889999
Q ss_pred EEeecCCCCC----CcceEEEECCC-CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 162 SCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 162 ~~~~~~~~~~----~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
++.+.+++.. ..++++..|++ ++|+.+.|||.........++..+++.+++- ...+++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 9988765431 23678888766 8999999999876544455666666544443 3467899999999999864
No 48
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=1.4e-30 Score=231.55 Aligned_cols=222 Identities=18% Similarity=0.258 Sum_probs=165.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
+||||||.|+||+|+|..+||||+|++|+ |||+|+++.+.++|++++++++++.. ...+++...+... .. +.. +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~-~~--~~~-i 74 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL-AP--NAT-V 74 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh-CC--CCE-E
Confidence 48999999999999999999999999999 99999999999999999999886332 1222322221000 00 111 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.+.+. . ..||+++++.++..+.. .++|++++||++++.++.++++.|.+.+.+.++++.+.+
T Consensus 75 ~~~~~-~---------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 75 VELDG-E---------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEeCC-C---------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22221 1 26999999999988842 478999999999999998999988887777777776652
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHH-HHHHHHhhhC----CC-C
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----PT-A 244 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~l~~~~----~~-~ 244 (378)
...||.+..|++|+|..+.||+.. +.++++|+|+|+++ .|.+.++... +. .
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999989999999888532 13579999999997 6555555421 11 1
Q ss_pred Cchhccccccccccc-ceEEEEe-cceEEecCCHHHH
Q 017030 245 NDFGSEIIPASANEQ-FLKAYLF-NDYWEDIGTIRSF 279 (378)
Q Consensus 245 ~~~~~~~l~~l~~~~-~i~~~~~-~~~~~~i~t~~~~ 279 (378)
..+..++++.+++++ ++.++.+ +++|.||+||+||
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 123357788888664 6999999 6999999999987
No 49
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=2.7e-30 Score=224.35 Aligned_cols=199 Identities=51% Similarity=0.818 Sum_probs=156.9
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.||||+|+|.+.||+|+|++|++|||+|+++++.++|+++|+|++++..+++.+|+.+...++- ......+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 69999999999999999999999999998689999999999999999999999999999999864321111 0000113
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++...+.. .+....||+++++.++.++++. ..++|++++||++++.++.++++.|.++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444332210 1223579999999999998531 1378999999999999999999999998888888764
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC-CCCchhc
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGS 249 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~-~~~~~~~ 249 (378)
. ++|+|+|++++|.++++...+ ....+..
T Consensus 147 -------------------------~-------------------------~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 -------------------------A-------------------------SMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred -------------------------h-------------------------cCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 1 579999999998777665322 2335567
Q ss_pred ccccccccccceEEEEecceEEec
Q 017030 250 EIIPASANEQFLKAYLFNDYWEDI 273 (378)
Q Consensus 250 ~~l~~l~~~~~i~~~~~~~~~~~i 273 (378)
|+++.+++++++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 899999999999999999999986
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=1.3e-30 Score=231.39 Aligned_cols=222 Identities=20% Similarity=0.274 Sum_probs=167.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--------~~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--------PN---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--------CC---e
Confidence 69999999999999999999999999999 999999999999999999999999988898887531 11 3
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCCCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (378)
.++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++|+++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 333322211 2699999999998882 78999999998865 566777778888998888744332
Q ss_pred CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh---CC--CCC
Q 017030 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FP--TAN 245 (378)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~---~~--~~~ 245 (378)
...++....+ ++++..+.+|+.... ...+.++|+|+|+++++..+.+.. .+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3445544433 378999999875432 124689999999999986553321 11 123
Q ss_pred chhcccccccccccc--eEEEEecceEEecCCHHHHHHHH
Q 017030 246 DFGSEIIPASANEQF--LKAYLFNDYWEDIGTIRSFFEAN 283 (378)
Q Consensus 246 ~~~~~~l~~l~~~~~--i~~~~~~~~~~~i~t~~~~~~a~ 283 (378)
.+.+++++.++++.+ +..+.. ++|.||+|++||.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 445688888887434 445545 8999999999999873
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.96 E-value=5.4e-29 Score=225.79 Aligned_cols=233 Identities=20% Similarity=0.326 Sum_probs=167.3
Q ss_pred eeEEEEcCCCCcccccccc-cCcccceeecC-eeeeeeeehhhhhhc-CCcEEEEEeecChh-hHHHHHHhhccCCCCcc
Q 017030 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~-~~pK~llpi~g-~~pli~~~l~~l~~~-gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~ 84 (378)
|++||||||.||||+|+|. .+||+|+|++| + |||+|+++++... ++++|+|++++... .+.+++.. . ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~--- 73 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LP--- 73 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CC---
Confidence 6899999999999999996 79999999999 7 9999999999998 59999999987543 45555543 1 01
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEe--cCHHHHHHHHHH---cCCcE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~--~d~~~~l~~h~~---~~~~~ 159 (378)
.+.++.... ..||++++..+..++... ..++.++|++||+++. .+|.++++.+.+ .++.+
T Consensus 74 ----~~~ii~ep~---------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 74 ----EENIILEPE---------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred ----CceEEECCC---------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 122332111 259999999998888531 1247899999999776 447777765543 67788
Q ss_pred EEEEeecCCCCCCcceEEEECCCC-----CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 160 TISCLPMDDSRASDFGLMKINNEG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
|+.+.+..+ ...||++..+++. +|.+|.|||+...++.+.. ...+++|+|+|+|+++.|.
T Consensus 139 t~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~-------------~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 139 TFGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLE-------------SGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EEEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhh-------------cCCeEEECceeeeeHHHHH
Confidence 888887643 5789999998653 8999999998765432211 1236899999999998887
Q ss_pred HHHhhhCCCCCc----------------hhcccccc--------cc--cccceEEEEecceEEecCCHHH
Q 017030 235 NLLRWRFPTAND----------------FGSEIIPA--------SA--NEQFLKAYLFNDYWEDIGTIRS 278 (378)
Q Consensus 235 ~~l~~~~~~~~~----------------~~~~~l~~--------l~--~~~~i~~~~~~~~~~~i~t~~~ 278 (378)
+.+++..|.... +..+.++. .+ +..++.+++.+..|.|+|++++
T Consensus 204 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 204 EELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 777765442100 00111221 11 2346888888889999999875
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=2.6e-28 Score=214.20 Aligned_cols=203 Identities=19% Similarity=0.334 Sum_probs=155.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCC-
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD- 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~- 87 (378)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.+.. .+..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~----~~~~~ 75 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS----SLSSK 75 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc----cccCC
Confidence 6899999999999999999999999999999 999999999999999999999999998898888764311 0110
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHH--HHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~--h~~~~~~~ti~~~~ 165 (378)
..+.+....+. .+.||+++++.+++.+. ++|++++||++++.|+.++++. +..+++++|+.+..
T Consensus 76 ~~v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~ 141 (216)
T cd02507 76 MIVDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLL 141 (216)
T ss_pred ceEEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEe
Confidence 11223222222 14799999999988773 7899999999999999999965 55556667766655
Q ss_pred cCCC-------CCCcceEEEECCC---CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 166 MDDS-------RASDFGLMKINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 166 ~~~~-------~~~~~g~v~~d~~---~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
.... ....++.+..|++ .++..+.+++.... ...++..+|+.+|+ ....+++.++|+|+|+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 142 ASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 4322 1456888999887 57888888776542 33356777776664 34567899999999999864
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=8e-28 Score=210.93 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=152.4
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecCh-hhHHHHHHhhccCCCCcccCC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++.. +.+++++.+.. +..+ ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~--~~- 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK--QK- 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC--cc-
Confidence 6899999999999999999999999999999 99999999999999999999998654 45777775421 1110 00
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecC
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
..+.+.. +. .+.||+++|+.+.+.+ .++|++++||.+++.++.++++.|+++++.+|+++.+..
T Consensus 76 ~~~~~~~--~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIV--LD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEec--CC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1111211 11 1369999999998876 368999999999999999999999999999999998754
Q ss_pred CC-----------CCCcceEEEECC-CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH
Q 017030 168 DS-----------RASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (378)
Q Consensus 168 ~~-----------~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 233 (378)
.. ....+.++..|+ +++++.+....+.. ....++..+|+.+|+- ....++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 21 123467777765 46888776543322 2344577888777643 4567899999999999864
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.95 E-value=1e-26 Score=206.47 Aligned_cols=221 Identities=24% Similarity=0.363 Sum_probs=168.8
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+| ..||+|+|++|+ |||+|+++++.++|+++++|++++..+++.+++.. ++ +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~---------~~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN---------PN---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC---------CC---c
Confidence 69999999999985 589999999999 99999999999999999999999888888877643 11 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+++.... ..|++++++.++.+++. ..++|++++||. ++ ..++..+++.|.+.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 2222111 25899999999998853 137899999998 33 455899999998877888888777654
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~---~~ 245 (378)
+..|+.+..+++|+|..+.||+.....+ ...+++++|+|+|+++.|.++++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 5678988888779999999987532110 0125689999999998776666654221 22
Q ss_pred chhcccccccccc-cceEEEEecce--EEecCCHHHH
Q 017030 246 DFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSF 279 (378)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~~~--~~~i~t~~~~ 279 (378)
.+..++++.+++. .+++++.++|| |+.|+||.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 3346778888865 57999999876 6788998763
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.94 E-value=7e-26 Score=219.51 Aligned_cols=241 Identities=20% Similarity=0.298 Sum_probs=165.7
Q ss_pred eeEEEEcCCCCccccccccc-CcccceeecC-eeeeeeeehhhhhhcCCcEEEEEeecChh-hHHHHHHhhccCCCCccc
Q 017030 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~-~pK~llpi~g-~~pli~~~l~~l~~~gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (378)
|.+||||||.||||+|+|.. +||+|+|+.| + |||+|+++.+...++++++|+++.... .+.+.+.. +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~-------- 70 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I-------- 70 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c--------
Confidence 67999999999999999996 8999999977 7 999999999999999999999875443 34444432 1
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEec--CHHHHHHHH---HHcCCcEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~--d~~~~l~~h---~~~~~~~t 160 (378)
+.....++. ++. ..|||+++..+..++.+.. ..++.++|++||+++.. +|.++++++ .+.++.+|
T Consensus 71 ~~~~~~~i~--Ep~-------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 71 GKLASNIIL--EPV-------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred CCCcceEEe--ccc-------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 101111221 111 3589999988776663100 11345999999987643 378887765 34566777
Q ss_pred EEEeecCCCCCCcceEEEECC------CCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHH
Q 017030 161 ISCLPMDDSRASDFGLMKINN------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (378)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 234 (378)
+...+..+ ...||++..++ .++|.+|.|||+...+..+..+ ..+++|+|+|+|+++.|.
T Consensus 141 lgi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~-------------g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLES-------------GDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhc-------------CCeEEEeeEEEEEHHHHH
Confidence 77765543 57899999873 2589999999987554322211 246899999999987776
Q ss_pred HHHhhhCCCC-----------------Cchhccccc---------ccc-cccceEEEEecceEEecCCHHHHHHHHH
Q 017030 235 NLLRWRFPTA-----------------NDFGSEIIP---------ASA-NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (378)
Q Consensus 235 ~~l~~~~~~~-----------------~~~~~~~l~---------~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~ 284 (378)
+.+++..|+. ..+..+.++ .++ +..++.+.+.+..|.|+|+++++.++..
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~~ 282 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEISD 282 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhhc
Confidence 6665543321 001112223 112 2346888889989999999999999854
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.93 E-value=7.8e-25 Score=196.38 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=158.7
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
|++.+||||+|.++||. ||+|+|++|+ |||+|+++.+.++++++|+|++++ +.+.+++.+ + +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--------~ 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--------G 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--------C
Confidence 35789999999999993 7999999999 999999999999999999988853 556666642 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++...+.. +.|+++... +...+.. ...+.+++++||+ +++.+ +.++++.|.++++++++++.
T Consensus 63 ---~~v~~~~~~~-------~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~ 128 (245)
T PRK05450 63 ---GEVVMTSPDH-------PSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAV 128 (245)
T ss_pred ---CEEEECCCcC-------CCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeee
Confidence 1122211221 246665443 3333321 0136799999999 66555 88999988777677777666
Q ss_pred ecCC----CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 165 PMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 165 ~~~~----~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
+..+ ..++.++++ +|++|+|+.|.|||..+..... +.+ ...+++.++|+|+|+++.+..+.+..
T Consensus 129 ~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~----------~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~ 196 (245)
T PRK05450 129 PIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAF----------ADS-APTPVYRHIGIYAYRRGFLRRFVSLP 196 (245)
T ss_pred ecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCcc----------ccc-cCccccEEEEEEecCHHHHHHHHhCC
Confidence 6522 234557755 8888999999999854321000 000 01247899999999999997665432
Q ss_pred CCCCCchh--cccccccccccceEEEEecc-eEEecCCHHHHHHHHHhc
Q 017030 241 FPTANDFG--SEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 241 ~~~~~~~~--~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~ 286 (378)
+...... .++++.+-++.+++++..+| +|.|||||+||.+|+..+
T Consensus 197 -~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 -PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred -CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 2111111 11233333566899999996 999999999999998764
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.92 E-value=2.6e-24 Score=192.21 Aligned_cols=227 Identities=19% Similarity=0.284 Sum_probs=154.8
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||+|.++||. ||+|+|++|+ |||+|+++.+.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C
Confidence 3679999999999994 7999999999 9999999999998 99999998864 566666642 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHc-CCcEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQS-GADITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~-~~~~ti~~ 163 (378)
+.++...+.. ..|+++ +..+...+.. ..+.|++++||+ +++. ++..+++.|.+. ++++++++
T Consensus 63 ---~~~~~~~~~~-------~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPDH-------PSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCccc-------CchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 1222111111 247775 5555555531 027799999998 5544 589999988766 77888888
Q ss_pred eecCCCC----CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 164 LPMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 164 ~~~~~~~----~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+.+++. ...++ +..+++|+|+.|.+++...... +. ...+.++++|+|+|++++|..+...
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~ 192 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAAL 192 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhC
Confidence 8765421 22344 5567778999998765432100 00 0013578999999999999766443
Q ss_pred hCCCCCchhccccc--cccc-ccceEEEEecceEEecCCHHHHHHHHH
Q 017030 240 RFPTANDFGSEIIP--ASAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (378)
Q Consensus 240 ~~~~~~~~~~~~l~--~l~~-~~~i~~~~~~~~~~~i~t~~~~~~a~~ 284 (378)
. ....++ .+.+. .+++ +.+++++..+++|.+||||+||.+|++
T Consensus 193 ~-~~~~~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 P-PSPLEQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred C-Cchhhh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 111111 12222 3344 446999999999999999999999975
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=5.2e-24 Score=180.42 Aligned_cols=223 Identities=15% Similarity=0.227 Sum_probs=149.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEe-ecChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~-~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|..|+|||||||.|+||+| +.||+|+.++|+ ++|+|++++|.++|+++++||+ ++..+.+++++++.. +
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~-~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP-F----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC-c-----
Confidence 4679999999999999998 899999999999 9999999999999999999999 888888888876432 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCH-HHHHHHHHHcCCcEEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQSGADITISC 163 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~-~~~l~~h~~~~~~~ti~~ 163 (378)
..+++.....+ -.+|+.+|+.++++++ +.|++++||+++...+ +.++ +.+.. ++.+
T Consensus 71 ----~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l~----~a~~~-~li~ 127 (239)
T COG1213 71 ----NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERLL----EAPGE-GLIV 127 (239)
T ss_pred ----ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHHH----hCcCC-cEEE
Confidence 12333322221 1367999999999985 5799999999998864 3333 33222 2333
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
...+......-.....+++|++..+.++-... .-.++|++.|+++++....+.. ..
T Consensus 128 d~~~~~~~~~ea~kv~~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~~~-~e 183 (239)
T COG1213 128 DRRPRYVGVEEATKVKDEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYELL-VE 183 (239)
T ss_pred eccccccccCceeEEEecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHHHH-hh
Confidence 22221111111222344678888887655422 2358999999999886543322 11
Q ss_pred CCchhcccccccccccceEEEEe-----cceEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPASANEQFLKAYLF-----NDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~-----~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.. ...+.+..+...+....+ ..+|++|+||+|+.+|.+.+..
T Consensus 184 ~~---~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 184 RS---EYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred hh---hHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 10 111222222222222222 3579999999999999887653
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.90 E-value=1.2e-22 Score=181.45 Aligned_cols=225 Identities=18% Similarity=0.303 Sum_probs=150.9
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--------~ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--------G 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--------C
Confidence 5789999999999994 5999999999 9999999999998 89999998864 567777643 1 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCC-cEEEEE
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGA-DITISC 163 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~-~~ti~~ 163 (378)
.. +.+. .+.. ..|++ .+..+...++ .+.|++++||. +. ..++..+++.|.+.+. .+++++
T Consensus 64 ~~-v~~~--~~~~-------~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 GK-VVMT--SDDH-------LSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred Ce-EEec--CccC-------CCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 11 1111 1111 23666 4555655553 47899999997 33 5558999998876543 566666
Q ss_pred eecCCC-C---CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 164 LPMDDS-R---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 164 ~~~~~~-~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+.+.. . +..+++ ..+++|++..+.|+|.....+. ...+.+.++|+|+|++++|..+ ..
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-Hc
Confidence 654421 1 334444 4456789999987653211100 0013478999999999999754 32
Q ss_pred hCCCC-Cchhc-ccccccc-cccceEEEEecceEEecCCHHHHHHHHHh
Q 017030 240 RFPTA-NDFGS-EIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 240 ~~~~~-~~~~~-~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~ 285 (378)
..... ..+.. +++ .++ .+.+++++..+++|.||+||+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 11222 444 444 45669999999999999999999999764
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.90 E-value=7.7e-23 Score=196.34 Aligned_cols=244 Identities=19% Similarity=0.310 Sum_probs=166.2
Q ss_pred cceeEEEEcCCCCccccccccc-CcccceeecC-eeeeeeeehhhhhhcCCcEEEEEeecChh-hHHHHHHhhccCCCCc
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGV 83 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~-~pK~llpi~g-~~pli~~~l~~l~~~gi~~I~iv~~~~~~-~i~~~l~~~~~~~~~~ 83 (378)
++|.+||||||.||||+|+|.. .||+|+|+.| + |||+++++.+...++.+.+|+++.... .+++.+.. . ..
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~-sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~--~~-- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDL-TMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-L--NK-- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCC-CHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-c--CC--
Confidence 3489999999999999999998 7999999966 6 999999999998888888888875544 34444432 1 10
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC--HHHHHHHH---HHcCCc
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNH---RQSGAD 158 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d--~~~~l~~h---~~~~~~ 158 (378)
.... + ++.+.. .+|+.++..+..++.+.....+..++|+++|+++... |.+.++.- .+.+..
T Consensus 78 -~~~~-i-i~EP~~----------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~l 144 (478)
T PRK15460 78 -LTEN-I-ILEPAG----------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKL 144 (478)
T ss_pred -cccc-E-EecCCC----------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCE
Confidence 0001 1 222221 4799998777666643100113578999999976543 65555443 234777
Q ss_pred EEEEEeecCCCCCCcceEEEECCC---------CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEe
Q 017030 159 ITISCLPMDDSRASDFGLMKINNE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~---------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~ 229 (378)
+|+...|... .+.||++..++. .+|.+|.|||+...+..+..++ .+++|+|+|+|+
T Consensus 145 vt~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G-------------~y~WNsGiF~~~ 209 (478)
T PRK15460 145 VTFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASG-------------EYYWNSGMFLFR 209 (478)
T ss_pred EEEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcC-------------CEEEecceehee
Confidence 8877776654 678999987642 2699999999998877665443 368999999999
Q ss_pred HHHHHHHHhhhCCCCC--------------chh---ccccc--------ccc--cccceEEEEecceEEecCCHHHHHHH
Q 017030 230 KEILLNLLRWRFPTAN--------------DFG---SEIIP--------ASA--NEQFLKAYLFNDYWEDIGTIRSFFEA 282 (378)
Q Consensus 230 ~~~l~~~l~~~~~~~~--------------~~~---~~~l~--------~l~--~~~~i~~~~~~~~~~~i~t~~~~~~a 282 (378)
.+.+.+.+++..|... .+. .+.++ +.+ +..++.+.+.+-.|.|+|++.++.+.
T Consensus 210 a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 210 AGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHh
Confidence 9988777665444210 000 11111 111 12458888888889999999999887
Q ss_pred HH
Q 017030 283 NL 284 (378)
Q Consensus 283 ~~ 284 (378)
..
T Consensus 290 ~~ 291 (478)
T PRK15460 290 SA 291 (478)
T ss_pred hc
Confidence 53
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.2e-22 Score=177.48 Aligned_cols=244 Identities=20% Similarity=0.305 Sum_probs=170.1
Q ss_pred ceeEEEEcCCCCcccccccc-cCcccceeecC-eeeeeeeehhhhhh-cCCcEEEEEeecChhh-HHHHHHhhccCCCCc
Q 017030 8 TVAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCIN-SGINKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~-~~pK~llpi~g-~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~-i~~~l~~~~~~~~~~ 83 (378)
+|.+||||||.|+|||||+. .+||++|++.+ + +|++.+++++.. .+..++++++++.+.. +++.+.+. ..+.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIEN 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhcc
Confidence 47899999999999999975 58999999966 7 999999999988 6789999999866543 45555431 0000
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC--HHHHHHHH---HHcCCc
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNH---RQSGAD 158 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d--~~~~l~~h---~~~~~~ 158 (378)
.. . -++.+. | ..|+.|+..+.-.+... .++.-++|+++|+++..+ |.+.++.. .+++..
T Consensus 77 -~~-~--illEP~------g----RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~l 140 (333)
T COG0836 77 -AA-G--IILEPE------G----RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGI 140 (333)
T ss_pred -cc-c--eEeccC------C----CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCE
Confidence 00 1 133322 2 36999998776666431 224469999999977554 66666543 346777
Q ss_pred EEEEEeecCCCCCCcceEEEECCC------CCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHH
Q 017030 159 ITISCLPMDDSRASDFGLMKINNE------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (378)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~ 232 (378)
+|+...|... ...||+++..+. -+|.+|.|||+.+.++++..++ .+++|+|+|+|+...
T Consensus 141 VTfGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG-------------~y~WNSGmF~Fra~~ 205 (333)
T COG0836 141 VTFGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESG-------------EYLWNSGMFLFRASV 205 (333)
T ss_pred EEEecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcC-------------ceEeeccceEEEHHH
Confidence 7887776543 688999987542 3799999999999888777654 367899999999998
Q ss_pred HHHHHhhhCCCC--------Cch-----h---c--------ccccccc--cccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 233 LLNLLRWRFPTA--------NDF-----G---S--------EIIPASA--NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 233 l~~~l~~~~~~~--------~~~-----~---~--------~~l~~l~--~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
+.+.+++..|+. .+. . . .-+.+.+ +..++.+.+.+-.|.|+|++..+.+....-
T Consensus 206 ~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d 285 (333)
T COG0836 206 FLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKD 285 (333)
T ss_pred HHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcC
Confidence 777766654431 000 0 0 0111111 235688888888899999999988875433
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=7e-21 Score=154.53 Aligned_cols=220 Identities=15% Similarity=0.208 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.|||||||.||||.|+|...||+|+.|.|+ |||+++|+.|.++||++|+||+||..+++ +|+++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999999 99999999999999999999999999888 58877651
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecCHHHHHHHHHHcCCcEEEEEeecCC
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
+.+++..... -.+...++..+++++. +..++.+|.++...+ +........-.......
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 4444332211 1357788999998884 567889998765542 11111111112122221
Q ss_pred CCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHH---HHHHhhhCCC--
Q 017030 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFPT-- 243 (378)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l---~~~l~~~~~~-- 243 (378)
..+--.+..+.+|+|+++.-.... .+.-+|+-+|+...- ..+++...-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~~------------------------~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGLN------------------------GYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCcc------------------------cceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 222334556778999998543321 346789999987533 3344433111
Q ss_pred -CCchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhccc
Q 017030 244 -ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 -~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~l~ 288 (378)
..-+.+++.-+-+++..+++-..++ --+++++.++|......++.
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 1123344545555666666665554 47889999999988776554
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.82 E-value=8.1e-19 Score=159.99 Aligned_cols=235 Identities=17% Similarity=0.171 Sum_probs=152.4
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.+| ++...+++.+++.+. +
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~~---------~ 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRGF---------G 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHHc---------C
Confidence 46789999999999994 6999999999 99999999999876544433 345667777776421 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE--E
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI--S 162 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti--~ 162 (378)
++++...+.. ..||+++ ..+.+.++. ..+.+++++||. +.+.+ +..+++.+.+. .++++ +
T Consensus 109 ---v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~ 172 (293)
T PLN02917 109 ---ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTA 172 (293)
T ss_pred ---CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEE
Confidence 1222111111 2477776 467677742 147899999999 55555 88999877543 33333 2
Q ss_pred EeecCCCCCCcceEEE--ECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhh
Q 017030 163 CLPMDDSRASDFGLMK--INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~--~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~ 240 (378)
+.+.....+.+||.+. .|++|+++.|..++-.+.... .+++ ..-.+.++|+|+|+.+.|. .+.+.
T Consensus 173 ~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~~--~~i~~~n~Giy~f~~~~L~-~l~~l 239 (293)
T PLN02917 173 VTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVNP--QFPYLLHLGIQSYDAKFLK-IYPEL 239 (293)
T ss_pred eeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cccc--ccceEEEEEEEEeCHHHHH-HHHcC
Confidence 2222333367888885 777888786664432211000 0111 1225789999999999997 44543
Q ss_pred CCCCCchhcccccccc---cccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 241 FPTANDFGSEIIPASA---NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 241 ~~~~~~~~~~~l~~l~---~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.++ +.-.+++|.++. ++.+|..+..+.....|||++|+..+++.+.+
T Consensus 240 ~~~-n~e~e~yLtdl~~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 240 PPT-PLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCC-cccchhccHHHHHHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 222 222344555543 35578888776567789999999999998754
No 64
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.71 E-value=2e-16 Score=139.16 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=138.8
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCcccCC
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (378)
.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+..+ ++++|+|++++.. +.+.+.+...
T Consensus 1 ~aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~----------- 65 (217)
T TIGR00453 1 SAVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR----------- 65 (217)
T ss_pred CEEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------
Confidence 37999999999997 3479999999999 9999999999998 7999999997653 3444333210
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEee
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~ 165 (378)
..+.++.. . .+..++++.+...+++ .+.++++.||. ++..+ +..+++.+.+. ++++...+
T Consensus 66 ~~~~~~~~--~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~ 127 (217)
T TIGR00453 66 AVPKIVAG--G---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALP 127 (217)
T ss_pred CcEEEeCC--C---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEe
Confidence 01222211 1 1355788888877621 47899999999 56655 78888877653 34444444
Q ss_pred cCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 017030 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (378)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 245 (378)
.. .++...+++|.+..+.++... ..+.+ .|.|+...|.+++........
T Consensus 128 ~~------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~~ 176 (217)
T TIGR00453 128 VA------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEGF 176 (217)
T ss_pred cc------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcCC
Confidence 43 244455566778777663211 23344 699999999877754322211
Q ss_pred chhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHh
Q 017030 246 DFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (378)
Q Consensus 246 ~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~ 285 (378)
.+ .|....+. .+.++..+..+....+|+||+||..|+..
T Consensus 177 ~~-~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EI-TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CC-CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 11 12122221 25567777776667899999999888753
No 65
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.71 E-value=2.7e-16 Score=139.24 Aligned_cols=219 Identities=17% Similarity=0.188 Sum_probs=140.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecCh-hhHHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~-~~i~~~l~~~~~~~~~~ 83 (378)
++++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 356889999999999995 4579999999999 99999999999864 899999997654 3333322110
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
. ..+.++. .. .+.+++++.+...+.+ .+.++++.||. ++..+ +..+++.+.+.+ ..+
T Consensus 70 -~--~~~~~~~--~~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 70 -D--PKVTVVA--GG---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred -C--CceEEeC--Cc---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0 0122221 11 2468999999887743 47899999998 55555 889998876553 334
Q ss_pred EEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
.+.+..+ .+..+ +++|.+..+.++.. ....-+.|.|+.+.|.++++...
T Consensus 129 ~~~~~~~----~~~~v--~~~g~~~~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIKRS--DDGGGIVDTPDRSG-------------------------LWAAQTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEEEE--cCCCceeecCChHH-------------------------heeeeCCccchHHHHHHHHHHHH
Confidence 4444432 12222 44566665532111 11223489999999988876532
Q ss_pred CCCCchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 242 ~~~~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
... .+..+....+. .+.++..+..+..+.+|+|++||..|+..+.+
T Consensus 178 ~~~-~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AEG-KTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hcC-CCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 211 11111111111 24567777666668899999999999876643
No 66
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.69 E-value=1.3e-15 Score=135.47 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=142.1
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
+||+|+|.|+||. +|+|++++|+ |||.|+++.+.++++++|+|++.. +.+.+++.+ ++...+
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~---------~g~~~v 63 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQK---------FGIEVC 63 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH---------cCCEEE
Confidence 7999999999993 8999999999 999999999998899999998853 345555532 111111
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEeecCC
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~~~~ 168 (378)
. ..+.. ..|+ +.+..+...+.. ...+.++++.||. +...+ +.++++.+.+.++++++...+..+
T Consensus 64 ~---~~~~~-------~~Gt-~r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 64 M---TSKHH-------NSGT-ERLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred E---eCCCC-------CChh-HHHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 1 11110 1244 334344443321 0136789999999 56655 888888876555677777777543
Q ss_pred CC---CCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC-
Q 017030 169 SR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA- 244 (378)
Q Consensus 169 ~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~- 244 (378)
.. ..+...+..|.+|++..|.+.+-......... ...|. ....+...|+|.|+.++|.++.... +..
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~-----~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~-~~~l 200 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAK-----RQTPV---GDNLLRHIGIYGYRAGFIEEYVAWK-PCVL 200 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccc-----ccccc---ccceeEEEEEEeCCHHHHHHHHhCC-CCcc
Confidence 11 12244455577788777765532111000000 00010 0114568999999999998775442 221
Q ss_pred Cchh-cccccccccccceEEEEecce-EEecCCHHHH
Q 017030 245 NDFG-SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 279 (378)
Q Consensus 245 ~~~~-~~~l~~l~~~~~i~~~~~~~~-~~~i~t~~~~ 279 (378)
...+ -+.|+.+-.+.+|.+...+.. -..|+||+|+
T Consensus 201 e~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 201 EEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1111 245677777889999888765 4589999996
No 67
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.66 E-value=6.5e-16 Score=131.36 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=94.8
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|++++++..+.++.++....
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 7899999999999974 79999999999 9999999999998999999999888777887775321
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-Eec-CHHHHHHHHHHcCCcEEEEEee
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRM-DYMDFVQNHRQSGADITISCLP 165 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~-d~~~~l~~h~~~~~~~ti~~~~ 165 (378)
..+.. ... .|...++..++..+.. .++|++++||+. ... .+..+++.+...+...+.++.+
T Consensus 65 -~~~~~-~~g---------~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN-ASG---------KGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe-cCC---------CCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11111 111 4777888888765432 479999999993 444 4888998877665555555444
No 68
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.65 E-value=1.7e-15 Score=133.37 Aligned_cols=211 Identities=18% Similarity=0.254 Sum_probs=136.9
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|++++........+.. +... .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~-------~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLS-------K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccC-------C
Confidence 589999999999974 379999999999 99999999999876 899999997765444433311 1000 0
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEeec
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~~~ 166 (378)
.+.++.. . .+...+++.+...++.. ..+.++++.||. +++.+ +..+++.+.+.+. .+...+.
T Consensus 70 ~~~~~~~--~---------~~~~~si~~al~~~~~~---~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVEG--G---------ATRQDSVLNGLKALPDA---DPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEECC--c---------hHHHHHHHHHHHhcccC---CCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 1233221 1 24578899998887410 147899999998 55655 8889888765443 3333333
Q ss_pred CCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 017030 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (378)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 246 (378)
.+ +....|++|.+.++.+.... ..+.++ ++|+.+.|.+++....+.. .
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~~-~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEEG-E 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhcC-C
Confidence 22 23345667888888764221 245677 9999999988876643221 1
Q ss_pred hhccccccccc--ccceEEEEecceEEecCCHHHHHH
Q 017030 247 FGSEIIPASAN--EQFLKAYLFNDYWEDIGTIRSFFE 281 (378)
Q Consensus 247 ~~~~~l~~l~~--~~~i~~~~~~~~~~~i~t~~~~~~ 281 (378)
+..|.. .++. +.++..+..+..-.||+||+||..
T Consensus 182 ~~td~~-~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 182 EFTDDA-SLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CcCcHH-HHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 111111 1222 345666665555569999999854
No 69
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.64 E-value=9.7e-16 Score=128.12 Aligned_cols=121 Identities=25% Similarity=0.392 Sum_probs=92.7
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999997 59999999999 999999999999999999999977 4455554321 1 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.++..... ..|++.+++.+...+.. .++|++++||+ +++.+ +..+++.+.+.++++++...
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 33332221 14999999999988732 59999999999 44555 88999988777777655443
No 70
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.64 E-value=6.3e-15 Score=138.45 Aligned_cols=208 Identities=15% Similarity=0.182 Sum_probs=137.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+... .
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~------~- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE------I- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc------C-
Confidence 466899999999999994 4589999999999 99999999999987 7999999976654433332111 0
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
..+.++. .. .+..++++.+++.++ .+.+++..||. +++.+ +..+++...+ +++++.
T Consensus 72 ---~~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 72 ---KFVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ---CeEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 0122221 11 246788999988875 37889999997 55555 6777776543 356777
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
..++.+ +..|+...+|.+ .+..+ ++|+... .+.+.+..+
T Consensus 130 ~~pv~D--tik~~~~tldR~-~l~~~-QTPQ~f~---------------------------------~~~l~~a~~---- 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDRE-GLKLI-QTPQLSR---------------------------------TKTLKAAAD---- 168 (378)
T ss_pred EEEecc--CcEEeeeEcCcc-cEEEE-ECCCCCC---------------------------------HHHHHHHHh----
Confidence 777765 445655455433 44433 6665432 111212111
Q ss_pred CCCchhcccccccc-cccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 243 TANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 243 ~~~~~~~~~l~~l~-~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
....+ .|..+.+. .+.++..+..+..|.+|++|+||..|+..+..
T Consensus 169 ~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 11111 23223322 25678888888999999999999999987654
No 71
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.63 E-value=1.5e-14 Score=127.82 Aligned_cols=217 Identities=18% Similarity=0.224 Sum_probs=135.5
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ ..+.+.+++.+. +
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~~---~------ 62 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARKY---G------ 62 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHHh---C------
Confidence 4679999999999994 5999999999 99999999999887 78887766 334455554321 1
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~~~ 164 (378)
...+...+.....+ ..|+.++++.+.+.++.. ....+.++++.||. +... ++.++++.+...+++.++.+.
T Consensus 63 ~~~~~~~~~~~~~~------~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 63 AEVPFLRPAELATD------TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CCceeeCChHHCCC------CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00011111100000 137889999998877521 00136899999999 4444 489999998877778777777
Q ss_pred ecCCCCCCcceEEEECCCC-CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 165 PMDDSRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
+..+ ..-++.+ .+++| .+..+.++..... +. .......++|+|+++.+.+.+. .
T Consensus 136 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-q~---------------~~~~~~~n~~~y~~~~~~~~~~-----~- 190 (223)
T cd02513 136 EFHR--FPWRALG-LDDNGLEPVNYPEDKRTRR-QD---------------LPPAYHENGAIYIAKREALLES-----N- 190 (223)
T ss_pred ecCc--CcHHhee-eccCCceeccCcccccCCc-CC---------------ChhHeeECCEEEEEEHHHHHhc-----C-
Confidence 6543 2223333 22223 2222212111100 00 0112457889999999977431 0
Q ss_pred CCchhcccccccccccceEEEEecc-eEEecCCHHHHHHHHHh
Q 017030 244 ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (378)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~ 285 (378)
.+ -+.++..+..+. ...||+|++|+..|...
T Consensus 191 --~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 --SF---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred --Cc---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 01 156777777665 48999999999988653
No 72
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.62 E-value=1.2e-14 Score=128.94 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=136.3
Q ss_pred ceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecCh-hhHHHHHHhhccCCCCccc
Q 017030 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 8 ~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~ 85 (378)
.+.+||||||.|+||. ...||+|+|++|+ |||.|+++.+..+ .+++|+|+++... ..+.+.+.+ + + +
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~--~----~ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-L--N----V 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-c--C----c
Confidence 3689999999999996 4579999999999 9999999999875 5899999986543 233334432 1 1 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
....++++... .+..++++.++..++. .+.++++.||. ++..+ +..+++.+.+.++. +.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEE
Confidence 00113333211 1345888888877743 35678889999 66666 78888877665432 333
Q ss_pred eecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC
Q 017030 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (378)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 243 (378)
.+..+ .+... .+|.+....++. . .+.--+.|.|+.+.|.++.+.....
T Consensus 133 ~~~~d------ti~~~-~~~~~~~~i~r~---~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD------TVKRV-KDKQVIETVDRN---E----------------------LWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc------eEEEE-cCCeeEeccCHH---H----------------------HhhhcCCceeeHHHHHHHHHHHHhc
Confidence 33321 11122 234443332211 0 1223468999998887776542111
Q ss_pred CCchhccccccc-ccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 244 ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 244 ~~~~~~~~l~~l-~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
.. +..+....+ -.+.++..++-+.....|+||+|+..|...+..
T Consensus 181 ~~-~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 181 QF-LGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CC-CcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 11 112211111 135678888777778899999999999876643
No 73
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.60 E-value=1.3e-14 Score=124.56 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=86.8
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceE
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i 90 (378)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999999899999999987765544443211 11 2
Q ss_pred EEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcE
Q 017030 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ 159 (378)
.++..... ..|++++++.+..+..+ .+.+++++||+ ++..+ +..+++.+...+..+
T Consensus 65 ~~v~~~~~--------~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVHNPQY--------AEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEECcCh--------hcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 23322111 14888999888762111 47899999999 44444 788888776555543
No 74
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.58 E-value=5.5e-14 Score=114.03 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=86.6
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|+++++.+...+++|+....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 679999999999995 367999999999 999999999998 789999999999888998885421
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
++++.... .|--.-++.+.+.+. .|+|++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 34443221 266777888877774 5999999999 44544 666666654
No 75
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.55 E-value=1.1e-13 Score=119.36 Aligned_cols=113 Identities=20% Similarity=0.255 Sum_probs=81.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
|.+|.+||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++|+|++++..+.+. . .
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARYA----A-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHHH----h-c--------
Confidence 467899999999999994 279999999999 99999999998 789999998875433221 1 0
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
+ +.++...... ..|+..+++.+....+ .+.+++++||. +++.+ +..+++.+.
T Consensus 62 ~---~~~v~~~~~~-------~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 62 G---LPVIPDSLAD-------FPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred C---CcEEeCCCCC-------CCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 1 1122211110 1478899998887654 47899999999 65655 677777543
No 76
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.52 E-value=5.7e-14 Score=120.28 Aligned_cols=120 Identities=22% Similarity=0.351 Sum_probs=88.6
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|++++....+.+++.. ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---------CC--
Confidence 4689999999999974 9999999999 99999999999989999999998766555444321 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.++..... ..|++.+++.++.++.. ..+.+++++||+ +++.+ +..+++.+...++.
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 222221111 14899999999888752 147899999999 55544 78888776544443
No 77
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.49 E-value=5.1e-13 Score=119.06 Aligned_cols=218 Identities=12% Similarity=0.115 Sum_probs=128.5
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecChhh-HHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~~~-i~~~l~~~~~~~~~~ 83 (378)
+..+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+ .++++|+|++++.... +++.+.. +
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~------ 90 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-I------ 90 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-c------
Confidence 445789999999999996 4579999999999 999999999988 4899999999866433 3333321 1
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCC--e-EEecC-HHHHHHHHHHcCCcE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD--~-~~~~d-~~~~l~~h~~~~~~~ 159 (378)
+.. +.+.. .. .+..++++.++..+.. +..+|+.+| . +...+ +..+++...+.+ +
T Consensus 91 --~~~-i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a 148 (252)
T PLN02728 91 --DVP-LKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHG--A 148 (252)
T ss_pred --CCc-eEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--e
Confidence 111 22221 11 2456789888887752 344566666 3 55555 688888766554 3
Q ss_pred EEEEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 160 TISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.+...+..+ -+...++++.|... ++.+.. +.---=-.|+.+.|.+..++
T Consensus 149 ~i~~~~~~d------tik~v~~~~~v~~t---~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~ 197 (252)
T PLN02728 149 AVLGVPVKA------TIKEANSDSFVVKT---LDRKRL----------------------WEMQTPQVIKPELLRRGFEL 197 (252)
T ss_pred EEEeecchh------hEEEecCCCceeec---cChHHe----------------------EEEeCCccchHHHHHHHHHH
Confidence 455554433 12223444544332 221110 11112234566666555554
Q ss_pred hCCCCCchhccccccc-ccccceEEEEecceEEecCCHHHHHHHHHhccc
Q 017030 240 RFPTANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 240 ~~~~~~~~~~~~l~~l-~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~ 288 (378)
....... ..|-...+ ..+.+|...+-+..-.-|.+|+|+..|...+..
T Consensus 198 ~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 198 VEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 3221111 11111111 124567776656567889999999999876543
No 78
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=2.1e-12 Score=108.64 Aligned_cols=234 Identities=19% Similarity=0.260 Sum_probs=161.5
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
++..+||+|.=.+||| --|||-.|+|+ |||.|+.+++.++|..+++|.+ +.+.+.+++.+ +|
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~---------~G 63 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQA---------FG 63 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHH---------hC
Confidence 4567899999899999 47999999999 9999999999999999999988 55677777753 22
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.+.+.-.... ..|| +.+..+...+.- ...+-++-+.||. +.... +..+++.....++++..+..
T Consensus 64 ~~avmT~~~h----------~SGT-dR~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 GEAVMTSKDH----------QSGT-DRLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CEEEecCCCC----------CCcc-HHHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 2222211111 1366 455555555542 1256788899999 54444 78888877777777777666
Q ss_pred ecCCC---CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 165 PMDDS---RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 165 ~~~~~---~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
+..+. ..++--.+..|.+|+.+.|...+-+..... . .....+...|+|.|+.++|.++....
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcC-
Confidence 65542 124455677888899999998776532110 0 00124567899999999998876543
Q ss_pred CCCCchh--cccccccccccceEEEEecceE-EecCCHHHHHHHHHhcc
Q 017030 242 PTANDFG--SEIIPASANEQFLKAYLFNDYW-EDIGTIRSFFEANLALT 287 (378)
Q Consensus 242 ~~~~~~~--~~~l~~l~~~~~i~~~~~~~~~-~~i~t~~~~~~a~~~~l 287 (378)
+..-+.. -+-|+-|-.+.+|.+...+..- ..++|++|+.++.+.+.
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 3211111 1345556678899999887654 89999999999987764
No 79
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.45 E-value=7.6e-12 Score=109.93 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=138.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccCCce
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (378)
|||||+|.++||. .|.++|++|+ |||.|+++.+.+++ +++|+|.+. .+.+.+...+ + +...
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~-~--------g~~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS-Y--------GASV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH-c--------CCEe
Confidence 7999999999993 6999999999 99999999999886 577766553 3455554432 1 1111
Q ss_pred EEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEec-CHHHHHHHHHHcCCcEEEEEeecC
Q 017030 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCLPMD 167 (378)
Q Consensus 90 i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~-d~~~~l~~h~~~~~~~ti~~~~~~ 167 (378)
+..-+..-.. ...|+.++++.+...++.. ...+.++++.+|. +... ++..+++.+.+.+++..+.+.+..
T Consensus 64 ~~~r~~~l~~------d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 64 PFLRPKELAD------DFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred EEeChHHHcC------CCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 1111110000 0147899999998887421 1147799999999 4444 489999988877788777777754
Q ss_pred CCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCCCch
Q 017030 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (378)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 247 (378)
.. ..+. ...+++|++..+.......+.+.+ ...+..+.++|+++++.+.+ . ..+
T Consensus 136 ~~--~~~~-~~~~~~g~~~~~~~~~~~~~rQd~---------------~~~y~~nga~y~~~~~~~~~---~-----~~~ 189 (222)
T TIGR03584 136 FP--IQRA-FKLKENGGVEMFFPEHFNTRSQDL---------------EEAYHDAGQFYWGKSQAWLE---S-----GPI 189 (222)
T ss_pred CC--hHHh-eEECCCCcEEecCCCcccCCCCCC---------------chheeeCCeEEEEEHHHHHh---c-----CCc
Confidence 31 1222 234456766665432211111111 12356799999999997742 1 011
Q ss_pred hcccccccccccceEEEEecc-eEEecCCHHHHHHHHHhc
Q 017030 248 GSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~~-~~~~i~t~~~~~~a~~~~ 286 (378)
-++++..|..+. ...||++++|+..|...+
T Consensus 190 ---------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 145677787765 489999999999987643
No 80
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.44 E-value=1.7e-12 Score=112.38 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=81.6
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
.+++.+||||||.|+||. .||+|+|++|+ |||+|+++.+... +.+|+|++++ .+.+..... .+
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~------~~--- 67 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPW-PERYQSLLP------PG--- 67 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhcc------CC---
Confidence 356899999999999996 58999999999 9999999999754 7888888753 222222111 01
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
+.++...+. ..|...+++.++..++ .+.+++++||. ++..+ +..+++...
T Consensus 68 ----~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 68 ----CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ----CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223322221 1489999999998875 37899999999 55655 677777543
No 81
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.42 E-value=4.1e-13 Score=117.98 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=77.6
Q ss_pred cccccccccccceEEEEecceEEecCCHHHHHHHHHhcccCCC-----------CccccCCCCcEEccCCCCCCcee---
Q 017030 249 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP-----------MFSFYDATKPIYTSRRNLPPSKI--- 314 (378)
Q Consensus 249 ~~~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~~-----------~~~~~~~~~~i~~~~~i~~~~~i--- 314 (378)
.|.++.++..+ ++.++|||.|+ ++|+++|+++|+... ...++..+..|.+.+.+.++++|
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~ 104 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDN 104 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCC
Confidence 57888888766 88899999999 999999999997631 11122233344444444444444
Q ss_pred ----eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEee---------eeeCCCCeEeeeeee
Q 017030 315 ----DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKV---------SPANPLCRRIWKCSS 369 (378)
Q Consensus 315 ----~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~ 369 (378)
.++.|. +++||+||.|+ ++.|. +|+||++|+||.++.|.+ ++|++++.|+.+|.+
T Consensus 105 ~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI 175 (231)
T TIGR03532 105 AVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVI 175 (231)
T ss_pred CEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEE
Confidence 233332 57778888887 67774 788888888888888863 666666666666665
No 82
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.40 E-value=3.1e-12 Score=110.36 Aligned_cols=109 Identities=17% Similarity=0.345 Sum_probs=76.2
Q ss_pred CccccccceeEEEEcCCCCcccccccccCcccceeecC-eeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccC
Q 017030 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY 79 (378)
Q Consensus 1 ~~~~~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g-~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~ 79 (378)
|-....+++.+||||||.++||+ .||+|+|++| + |||+|+++.+... +++|+|++++ ..+ . +
T Consensus 1 ~~~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~ 63 (196)
T PRK00560 1 MKNPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F 63 (196)
T ss_pred CCCccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c
Confidence 44455678999999999999996 6999999999 9 9999999999876 8899888874 111 0 0
Q ss_pred CCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHH
Q 017030 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDF 148 (378)
Q Consensus 80 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~ 148 (378)
. ..++.+.+.. ..|...++..++...+ .+.+++++||+ ++..+ +..+
T Consensus 64 ~---------~~~v~d~~~~-------~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---------APFLLEKESD-------LFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---------CcEEecCCCC-------CCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 1222221111 2466667766554443 48999999999 55665 4444
No 83
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.40 E-value=8.9e-13 Score=112.49 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=81.0
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+... +.+|+|++++..+. +. . .+
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~--~--------~~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA--L--------LG-- 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh--h--------cC--
Confidence 468999999999997 39999999999 9999999999987 89999999776543 11 0 01
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHH
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h 152 (378)
+.++..... ..|+..+++.++..++ .+.+++++||+ +.+.+ +..+++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 122222211 2589999999988775 48999999999 55555 67777765
No 84
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.38 E-value=8.7e-12 Score=117.75 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=84.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++..
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 456899999999999994 379999999999 999999999975 4899998776554444332210
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.++...... ..|...+++.++..++ .+.+++++||+ ++..+ +..+++.+...+++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 1112111110 1378899999988764 37799999998 55665 67777765444444
No 85
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.36 E-value=3.5e-11 Score=104.74 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh-cCCcEEEEEeecCh-hhHHHHHHhhccCCCCcccC
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~-~gi~~I~iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 86 (378)
+.|||||||.|+||. ...||.+++++|+ |+|.|+++.+.+ ..+++|+|++.... +.+++.+.+
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 468999999999997 5789999999999 999999999988 47899999986554 334443332
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
..+.++.-. ..-.++++.++..+... .+.+++-.|== +...+ +.++++...+ +..+.+...
T Consensus 66 -~~v~iv~GG-----------~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~ 128 (221)
T PF01128_consen 66 -KKVKIVEGG-----------ATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPAL 128 (221)
T ss_dssp -TTEEEEE-------------SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEE
T ss_pred -CCEEEecCC-----------hhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEE
Confidence 124444311 13668899998888751 24455544433 44444 6777776544 244556666
Q ss_pred ecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCCC
Q 017030 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (378)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 244 (378)
+..+ .+...+++|.+.+..+.... +.---=-.|+.+.|.+..++.....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR~~l-------------------------~~~QTPQ~F~~~~l~~a~~~a~~~~ 177 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDRSKL-------------------------WAVQTPQAFRFELLLEAYEKADEEG 177 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETGGGE-------------------------EEEEEEEEEEHHHHHHHHHTHHHHT
T ss_pred eccc------cEEEEecCCcccccCCHHHe-------------------------eeecCCCeecHHHHHHHHHHHHhcC
Confidence 6544 34455557777766433221 1122335678888877765531111
Q ss_pred Cchhcc--cccccccccceEEEEecceEEecCCHHHHHHHHHhc
Q 017030 245 NDFGSE--IIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 245 ~~~~~~--~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~ 286 (378)
..+-.| ++.. .+.++...+-+..-.-|.+|+|+..|...+
T Consensus 178 ~~~tDdasl~~~--~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 178 FEFTDDASLVEA--AGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHHSSHHHHHHH--TTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCccCHHHHHHH--cCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 111111 1111 256777776665677899999999987655
No 86
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.36 E-value=1.2e-11 Score=103.47 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=89.9
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+.++.+||||||.|+||. .+|-|+|+.|+ ||+.++++.+..+++++++++++|........... ..+
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~--- 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLG--- 69 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCC---
Confidence 356889999999999998 89999999999 99999999999999999999999873322222211 111
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHHHHc
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQS 155 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h~~~ 155 (378)
+.++...+. ..|.+.+++.+....... .+-++++.||+ +...++..+++.+..+
T Consensus 70 ----~~~v~npd~--------~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 ----VTVVVNPDY--------AQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ----eEEEeCcch--------hhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 333332222 258999999998888641 25899999999 3334488888776655
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.35 E-value=8.4e-11 Score=101.83 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=133.0
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecC-hhhHHHHHHhhccCCCCc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~-~~~i~~~l~~~~~~~~~~ 83 (378)
++.+.+||||||.|+||. ...||.+++++|+ |||+|+++.+..+ .+++|+|+++.. ...+.++.. + .
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~--~--- 70 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L--S--- 70 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h--c---
Confidence 356889999999999998 5899999999999 9999999999885 579999999763 333444332 1 0
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEEE
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
....++++.-. ..-.++++.++..+.. ...+.+|+.-+== ++..+ ++++++.. .+..+.+
T Consensus 71 --~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai 132 (230)
T COG1211 71 --ADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAI 132 (230)
T ss_pred --cCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEE
Confidence 01124444321 1367889999888863 1135555554433 44444 67777432 3344556
Q ss_pred EEeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhC
Q 017030 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (378)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 241 (378)
.+.+..+ -....++++.+.+.......... --=-.|+.+.|.+..++.+
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~l~~~-------------------------QTPQ~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSGLWAA-------------------------QTPQAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhhhhhh-------------------------hCCccccHHHHHHHHHHHH
Confidence 6666543 23334445666655433322111 0112356666766655543
Q ss_pred CCCCchhcc--cccccccccceEEEEecceEEecCCHHHHHHHHHhcc
Q 017030 242 PTANDFGSE--IIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (378)
Q Consensus 242 ~~~~~~~~~--~l~~l~~~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l 287 (378)
....++-.| ++.+ .+.++..+.-+-+-..|.+|+|+..|+..+.
T Consensus 182 ~~~~~~tDdas~~e~--~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 182 AEGREITDDASAIEK--AGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred hcCCCcCCHHHHHHH--cCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 222222111 1111 1557777666667789999999999887654
No 88
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.35 E-value=3.1e-12 Score=93.84 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=49.7
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
|++++.| +++.+.+|+||++|.|+ ++.|.+|+|+++++|+++++|.+|++++++.|+++|.+..+++|.
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~ 72 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGS 72 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECC
Confidence 4556666 45666677777777777 677777777777777777777777777777777777777777764
No 89
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.31 E-value=1.2e-11 Score=106.37 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=85.3
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+.+||||||.|+||. .||.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.+.. .. . .
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~-~--~--- 66 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LA-D--E--- 66 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hc-C--C---
Confidence 358999999999997 58999999999 999999998888899999999977654321 111110 00 0 0
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
.+.++..... ..|.+.+++.++..+... ..+.+++++||+ ++..+ +..+++........
T Consensus 67 ~~~~~~~~~~--------~~G~~~si~~gl~~~~~~---~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 67 RIMLVCCRDA--------CEGQAHSLKCGLRKAEAM---GADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CeEEEECCCh--------hhhHHHHHHHHHHHhccC---CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 1222211111 248889999998876321 147899999999 66666 67777765444443
No 90
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.31 E-value=7.7e-12 Score=107.18 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=82.7
Q ss_pred eeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 9 ~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
+.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. ++++|+|++++.... +.... ++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~--------~~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG--------FG-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc--------CC--
Confidence 468999999999996 259999999999 999999999976 589998888654322 21111 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.++..... ...|++++++.++..++ .+.+++++||. +.+.+ +..+++.+.+.++.
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 122222111 12589999999988774 47899999999 66666 67777765443433
No 91
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.29 E-value=1.2e-11 Score=95.17 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=62.2
Q ss_pred cCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 296 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
+.+++.+ .++.|++++.|+++.+++|+|+++|.|+ ++.|.+|+|+++++||++++|++|+|+++++|++++.+...
T Consensus 4 i~~~~~i-~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ecCCCEE-EeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 3445555 4577888888887888888899999998 78888899999999999999988999989888888887643
No 92
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.28 E-value=1.5e-11 Score=89.82 Aligned_cols=68 Identities=18% Similarity=0.045 Sum_probs=55.1
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee-eeEe
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC-SVIC 375 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~-~~~~ 375 (378)
|++++.| +++.+.+|+||++|.|+ ++.|.+|+|+++++|++++.|.+|++++++.|+.++.+.. ++++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig 72 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIG 72 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEEC
Confidence 4566777 56777778888888888 7888888888888888888888888888888888888877 7765
No 93
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.27 E-value=1.8e-11 Score=94.17 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=61.0
Q ss_pred Ccee-eCceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEe
Q 017030 311 PSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 311 ~~~i-~~~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~ 375 (378)
|++| +++.|++|+||++|.|+++.|++|+||++++|+++++|.+|++++++.|+++|.++.|++.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig 66 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIID 66 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEEC
Confidence 4667 6888999999999999989999999999999999999999999999999999999999885
No 94
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.27 E-value=1.1e-10 Score=103.67 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=77.6
Q ss_pred EEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecCh--hhHHHHHHhhccCCCCcccCC
Q 017030 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (378)
Q Consensus 11 avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 87 (378)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++... +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~-----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL-----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc-----C-----
Confidence 7999999999993 5999999999 99999999999987 899999987664 4555554321 1
Q ss_pred ceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCcEE
Q 017030 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (378)
Q Consensus 88 ~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~~t 160 (378)
+.++.... .+.......+....+ .+.++++.||+ +++.+ ++.+++.+...+.+.+
T Consensus 65 --v~~v~~~~----------~~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------EDVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hhHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22221111 011111222221121 47899999999 55555 8899988876655544
No 95
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.26 E-value=1e-10 Score=110.78 Aligned_cols=111 Identities=13% Similarity=0.181 Sum_probs=77.1
Q ss_pred ccccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCc
Q 017030 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (378)
Q Consensus 4 ~~~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~ 83 (378)
.++.++.+||||||.|+||+ .+|+|+|+.|+ |||+|+++.+.. .+.+|+|+++..... .+..
T Consensus 170 ~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~---~~~~-------- 231 (369)
T PRK14490 170 AEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAE---QYRS-------- 231 (369)
T ss_pred cccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhh---HHhh--------
Confidence 34577899999999999997 59999999999 999999999976 478888877543211 1111
Q ss_pred ccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHH
Q 017030 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (378)
Q Consensus 84 ~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~ 150 (378)
++ +.++.+... ..|...++..+..+.. .+.++++.||+ +...+ +..+++
T Consensus 232 -~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 232 -FG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred -cC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 11 223322221 1377778887766543 36899999999 55655 556555
No 96
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.18 E-value=7.4e-11 Score=86.46 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=63.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWK 366 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~ 366 (378)
.+.+++.+. ++.|++++.| .++.+++|+|+++|.|+ ++.+.+|+|++++.|+++++|.+||+++++.|..+
T Consensus 7 ~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~ 79 (81)
T cd04652 7 QVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAG 79 (81)
T ss_pred EECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCC
Confidence 344555554 6788999999 67999999999999999 89999999999999999999999999999999875
No 97
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.18 E-value=9.6e-11 Score=85.66 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCCcee-eCcee-eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee-eeEe
Q 017030 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC-SVIC 375 (378)
Q Consensus 309 ~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~-~~~~ 375 (378)
.++++| .++.+ .+++|+++|.|+ ++.|.+|+|+++++|++++.|.+|++++++.++.+|.+.. ++++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig 73 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLG 73 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEEC
Confidence 455666 45555 478888888887 7888888888888888888888888888888888888877 6654
No 98
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.8e-11 Score=110.49 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=44.3
Q ss_pred cCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 305 SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
.++||.+|.| ++++|.||+|.+|++|| |+.|+|||||+++.||+|+.++||+|+++-+|+-+-.-+++|
T Consensus 351 ~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev 421 (433)
T KOG1462|consen 351 RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKGKHGGEV 421 (433)
T ss_pred eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccccccccE
Confidence 4556666666 56666667777777776 666677777777777777777777777666666444444443
No 99
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.16 E-value=1.1e-10 Score=85.02 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee-eeeE
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~-~~~~ 374 (378)
|++++.| +++.+.+|+|+++|.|+ ++.|.+|+|+++++|+++++|.+++|+++++|+.+|.+. ++++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v 71 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLI 71 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEE
Confidence 5777888 67888899999999999 899999999999999999999999999999999999987 4554
No 100
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.15 E-value=6.6e-10 Score=102.46 Aligned_cols=218 Identities=18% Similarity=0.266 Sum_probs=127.2
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec---CeeeeeeeehhhhhhcC-----------CcEEEEEee-cChhhHH
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG-----------INKVYILTQ-YNSASLN 70 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~g-----------i~~I~iv~~-~~~~~i~ 70 (378)
..++.+||||||.|||| +...||+|+||+ |+ |++++.++.+.+.+ .-.++|.++ +..+++.
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 45789999999999999 477899999998 68 99999999998742 124557776 7778899
Q ss_pred HHHHhhccCCCC---ccc-CCceEEEeccccCC--CcCC--CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeE
Q 017030 71 RHLARAYNYGSG---VTF-GDGCVEVLAATQTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL 140 (378)
Q Consensus 71 ~~l~~~~~~~~~---~~~-~~~~i~i~~~~~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~ 140 (378)
+++.+...++-. ..+ ....+-.+...... .+.+ ...|.|.|+....... .+++....+.+.+.+.+.|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 998764322211 000 00001011000000 0001 1235678776654432 233322344689999999995
Q ss_pred Ee-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhccccccccccCc
Q 017030 141 YR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (378)
Q Consensus 141 ~~-~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (378)
.. .---.++-++.++++++.+-+.+...+ .+.-|.+.. |..-.++++.|-|...... ...++.+ .-
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~~g~~~vvEysel~~~~~~~-~~~~g~l----------~f 236 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLVDGKPQVVEYSEISDELAEK-RDADGEL----------QY 236 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEECCeEEEEEeecCCHHHHhc-cCcCCcE----------ec
Confidence 43 223467788888999998877665432 233454443 3333466666655433210 0000100 11
Q ss_pred ceeeeeEEEEeHHHHHHHHhh
Q 017030 219 YIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 219 ~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+..|..+.+|+.++++++++.
T Consensus 237 ~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 237 NAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred ccchHhhheeCHHHHHHHHhh
Confidence 234556778999988877643
No 101
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.13 E-value=1.2e-10 Score=99.30 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=80.4
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCccc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (378)
+++|.+||||||.++|| .+|+|++++|+ ||++|+++.|....- .++|....+.+. +. .+
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~----------~~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA----------EF 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh----------cc
Confidence 46799999999999999 68999999999 999999999998755 566665554332 11 11
Q ss_pred CCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcC
Q 017030 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 156 (378)
Q Consensus 86 ~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~ 156 (378)
+ +.++.+.... .|...+++.++..+. .+.+++++||+ +...+ +..+.....+.+
T Consensus 61 g---~~vv~D~~~~--------~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELPG--------FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCCC--------CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 2233322221 288999999988876 48999999999 55665 455555444333
No 102
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=3e-10 Score=82.82 Aligned_cols=69 Identities=20% Similarity=0.095 Sum_probs=61.3
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
+.+.+.+.+ +.|+++++| +++.+.+|+|+++|.|+ ++.+.+|+|++++.|+++++|.+ ++++++++++|
T Consensus 8 I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 8 IGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred ECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 344555555 888999999 68999999999999999 89999999999999999999999 99999998875
No 103
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.11 E-value=2.7e-09 Score=96.07 Aligned_cols=217 Identities=16% Similarity=0.180 Sum_probs=125.4
Q ss_pred eEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhh--------cCCcEEEEEeecChhhHHHHHHhhcc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN--------SGINKVYILTQYNSASLNRHLARAYN 78 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~--------~gi~~I~iv~~~~~~~i~~~l~~~~~ 78 (378)
.+|+||||.||||+ .+.||+|+||+ |+ |+|++.++++.+ .++..+++...+..+++.+++.+..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 57999999999996 78999999999 99 999999999976 2456666666778888999998643
Q ss_pred CCCCcc--cCCceEEEecccc-C-CCcCC--CccccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEE-ecCHHHHH
Q 017030 79 YGSGVT--FGDGCVEVLAATQ-T-PGEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY-RMDYMDFV 149 (378)
Q Consensus 79 ~~~~~~--~~~~~i~i~~~~~-~-~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~-~~d~~~~l 149 (378)
+..+.. |..+.+-.+.... . ..+.. ...+.|.|+.+.... ..++.....+...+.+.+.|.+. ...--.++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 111110 1100000111000 0 00011 123568887765432 12332223346889999999944 44123467
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhccc-ccchhccccccccccCcceeeeeEE
Q 017030 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMA-VDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
-.+...+.++.+-+.+.... ...-|.+...++|+ ++++.|-|......... .+.+ ..-..+....|+..+
T Consensus 157 G~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~------~~~~~~~~~~n~~~~ 229 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRN-EESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPK------DIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHcCCCEEEEEEECCCC-CCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcC------CCCceeeccceEEEE
Confidence 77778888888776665432 23345544422254 56666654332110000 0000 000012356789999
Q ss_pred EEeHHHHHHHHh
Q 017030 227 LFKKEILLNLLR 238 (378)
Q Consensus 227 ~~~~~~l~~~l~ 238 (378)
+|+-+.+.+.++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999999987765
No 104
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=2.4e-10 Score=104.95 Aligned_cols=69 Identities=16% Similarity=0.020 Sum_probs=65.6
Q ss_pred EccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
-.++.+..+|.|.+ +|+||+|+.|++|+ +|.|++|+|+++|+||+||+|+++||..||+|++|..|.++
T Consensus 294 v~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 294 VSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred EeeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 56788899999988 99999999999999 99999999999999999999999999999999999999876
No 105
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.5e-10 Score=110.77 Aligned_cols=57 Identities=30% Similarity=0.332 Sum_probs=53.6
Q ss_pred eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 320 VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 320 ~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
.+.+||.++.|| |+.|.||+||.||+||.|++|++|.|++||+|++||.|-.++||.
T Consensus 332 ~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d 389 (673)
T KOG1461|consen 332 ANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICD 389 (673)
T ss_pred ceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeec
Confidence 478899999999 899999999999999999999999999999999999999999995
No 106
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.06 E-value=2.6e-10 Score=110.17 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=55.4
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEe
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~ 375 (378)
+.+.+|+||+||+|+++.|++|+||++|+||++|+|++|||+++|.|+++|.+..|+|-
T Consensus 323 ~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~ 381 (425)
T PRK00725 323 GMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVID 381 (425)
T ss_pred ceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEEC
Confidence 46789999999999889999999999999999999999999999999999999998873
No 107
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=99.03 E-value=5.9e-09 Score=100.39 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=124.4
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhhc------------C-CcEEEEEe-ecChhh
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS------------G-INKVYILT-QYNSAS 68 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~------------g-i~~I~iv~-~~~~~~ 68 (378)
..++.+||||||.||||+ ...||+|+||+ |+ |+++++++++... + .-.++|.+ .+..+.
T Consensus 104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~ 179 (482)
T PTZ00339 104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQ 179 (482)
T ss_pred cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHH
Confidence 456999999999999996 67999999994 89 9999999999874 1 12455655 677788
Q ss_pred HHHHHHhhccCCCC---cc-cCCceEEEeccc-cCC--CcCC--CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcC
Q 017030 69 LNRHLARAYNYGSG---VT-FGDGCVEVLAAT-QTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (378)
Q Consensus 69 i~~~l~~~~~~~~~---~~-~~~~~i~i~~~~-~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~g 137 (378)
+++++.++..++-. .. |....+-.+... ... ...+ ...|.|.|+....... .+++....+.+.+.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 99998754222211 00 000000000000 000 0001 1234577766654322 133222344689999999
Q ss_pred CeEEecC-HHHHHHHHHHcCC-cEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhcccccccc
Q 017030 138 DHLYRMD-YMDFVQNHRQSGA-DITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (378)
Q Consensus 138 D~~~~~d-~~~~l~~h~~~~~-~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (378)
|.+.... --.++-++.++++ ++.-.+.+... .+.-|.+.. +..-.|+.+.|-+.......-....
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g---------- 327 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNNDELLTG---------- 327 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcccccCC----------
Confidence 9975433 3356677777777 65554444332 344566543 3223678888765432210000000
Q ss_pred ccCcceeeeeEEEEeHHHHHHHHh
Q 017030 215 EEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 215 ~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
.......++..++|+.++|.++.+
T Consensus 328 ~l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 328 ELAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred eecccccceEEEEEEHHHHHHHhh
Confidence 011245688999999999987754
No 108
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.02 E-value=5.8e-10 Score=107.35 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=55.3
Q ss_pred eeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 318 KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 318 ~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
.+++|+||+||.|+++.|.+|+||++|+||++|+|++|||+++++|+++|.+..|++|.
T Consensus 312 ~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~ 370 (407)
T PRK00844 312 SAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDK 370 (407)
T ss_pred eEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECC
Confidence 57899999999998899999999999999999999999999999999999999999874
No 109
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.00 E-value=1.5e-09 Score=79.35 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=60.7
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
.+.+...+.+.+.|++++.| .+++|++|+|+++|.|+ ++.+.+|+++++++|++++++.+ +++++++++++
T Consensus 7 ~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 7 KIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred EECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 34455556677778888888 78999999999999999 89999999999999999999999 88888887763
No 110
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.98 E-value=9.8e-10 Score=104.54 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=70.7
Q ss_pred ccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
++.+++.+ +++.|+++|.|+ ..+++|+|+++|.|+ +|.|++|+|+++|.|+++++|++|||+++++|+.+|.+.++.
T Consensus 280 ~i~~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~~ 357 (369)
T TIGR02092 280 YYAENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGTS 357 (369)
T ss_pred EEcCCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCCC
Confidence 44555555 678889999996 468999999999999 999999999999999999999999999999999999999886
Q ss_pred Eee
Q 017030 374 ICM 376 (378)
Q Consensus 374 ~~~ 376 (378)
+|-
T Consensus 358 ~~~ 360 (369)
T TIGR02092 358 EQP 360 (369)
T ss_pred Ccc
Confidence 653
No 111
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.96 E-value=1.7e-09 Score=103.32 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=65.0
Q ss_pred ccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
++.+++.+ .++.|+++|.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+||++++|.+|+|+++++|+.+|.+..
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 359 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGG 359 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcC
Confidence 44555555 4566777777753 57899999999999 8999999999999999999999999999999999999988
No 112
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.94 E-value=2.5e-09 Score=89.50 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=57.1
Q ss_pred CCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 299 TKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.+.+.+.+.|++++.| .++.|. +++||++|.|+ ++.|.+|+|+++++|+.++.+.+|+|+++++|+.+|.+.
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~ 103 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITA 103 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEc
Confidence 3334444555555555 466665 68999999999 899999999999999999999999999999999998873
No 113
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.93 E-value=2.1e-09 Score=99.97 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=78.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (378)
.++.+||||||.|+||. .+|+|+|+.|+ ||++|+++.+... +++|+|+++... .. +.. . .
T Consensus 159 ~~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~~----~-~----- 218 (346)
T PRK14500 159 TPLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GTP----L-E----- 218 (346)
T ss_pred CCceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-hcc----c-c-----
Confidence 36789999999999997 69999999999 9999999888764 888988875421 11 100 0 0
Q ss_pred CceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHH
Q 017030 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (378)
Q Consensus 87 ~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h 152 (378)
.+.++.+... ..|...+|+.++.... .+.+++++||+ +...+ +..+++.+
T Consensus 219 --~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 --NLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred --CCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 0223332222 2589999999988754 35789999999 56655 66666654
No 114
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=4.9e-09 Score=87.74 Aligned_cols=79 Identities=18% Similarity=0.053 Sum_probs=66.2
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
.+...+.+.+.+++++.| .++.+. +++||+||.|+ ++.|. +|+||++|.|+++++|.+|+|+++++|+.+|.+..|
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~s 88 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDS 88 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecC
Confidence 344555566667777777 566665 68999999998 89997 699999999999999999999999999999999888
Q ss_pred eEe
Q 017030 373 VIC 375 (378)
Q Consensus 373 ~~~ 375 (378)
++.
T Consensus 89 iIg 91 (163)
T cd05636 89 VLG 91 (163)
T ss_pred EEC
Confidence 875
No 115
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.88 E-value=3.8e-09 Score=102.25 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=63.1
Q ss_pred ccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcC-------------------CCEECCCCEEeeeeeCCCCeE
Q 017030 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI-------------------RSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~-------------------~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
..+.|+++|.|+++.|++|+||+||+|| ++.|.+|+|+. ++.||+||.|++|||+++|.|
T Consensus 307 ~~~~ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i 386 (429)
T PRK02862 307 TESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARI 386 (429)
T ss_pred EeCEECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEE
Confidence 3578899999988999999999999999 89999999986 799999999999999999999
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+++|.+..
T Consensus 387 ~~~~~~~~ 394 (429)
T PRK02862 387 GNNVRIVN 394 (429)
T ss_pred CCCcEEec
Confidence 99999964
No 116
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.87 E-value=6.6e-09 Score=98.60 Aligned_cols=75 Identities=15% Similarity=0.017 Sum_probs=66.6
Q ss_pred ccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++++.+ ...++.|+++|.|++..+.+|+||+||.|+ +|.|.+|+|++++.||++++|++|+|+++++|+.++.+.
T Consensus 285 ~i~~~~-~i~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 285 FVDSDA-QVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EecCCC-EEECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 444554 346688999999976689999999999999 899999999999999999999999999999999998874
No 117
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.84 E-value=1.3e-08 Score=84.21 Aligned_cols=79 Identities=11% Similarity=-0.028 Sum_probs=65.4
Q ss_pred ccccCCCCcEEccCCCCCCcee-eCceeeee----EEecCcEEc-ceEEee-----ceEcCCCEECCCCEEeeeeeCCCC
Q 017030 293 FSFYDATKPIYTSRRNLPPSKI-DDSKIVDS----IISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKVSPANPLC 361 (378)
Q Consensus 293 ~~~~~~~~~i~~~~~i~~~~~i-~~~~i~~s----~Ig~~~~I~-~~~i~~-----SiI~~~~~Ig~~~~i~~sIi~~~~ 361 (378)
..++++++.+...+.+++++.| .++.|..+ .||++|.|+ ++.|.. ++||++++|++++++.+++|++++
T Consensus 6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 85 (154)
T cd04650 6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV 85 (154)
T ss_pred CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence 3466777778888888888888 57777764 899999998 888875 789999999999999999999988
Q ss_pred eEeeeeeeee
Q 017030 362 RRIWKCSSLC 371 (378)
Q Consensus 362 ~~~~~~~~~~ 371 (378)
.|+.+|.+..
T Consensus 86 ~Ig~~~~i~~ 95 (154)
T cd04650 86 IVGMGAILLN 95 (154)
T ss_pred EEcCCCEEeC
Confidence 8888888754
No 118
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.83 E-value=1.2e-08 Score=84.50 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=51.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEE-----eeceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i-----~~SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++++.+..++.|++++.| .++.|.. +.||++|.|+ +|.| .+|+|+++++|++++.|.+++|++++.|
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I 87 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALV 87 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEE
Confidence 44555566666666677766 5566653 5677777777 6666 5577777777777777777777777777
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+.+|.+..
T Consensus 88 g~~~~I~~ 95 (155)
T cd04745 88 GMNAVVMD 95 (155)
T ss_pred CCCCEEeC
Confidence 66666543
No 119
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.81 E-value=1.3e-08 Score=86.90 Aligned_cols=77 Identities=8% Similarity=0.031 Sum_probs=57.1
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEE-----eeceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i-----~~SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
.++++++.+..++.|++++.| .++.|. ..+||++|.|+ +|.| .+|+||++++||+++.|.+|+|++++.
T Consensus 15 ~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~ 94 (192)
T TIGR02287 15 AYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNAL 94 (192)
T ss_pred cEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCE
Confidence 356666667777777777777 566665 35677777777 6776 568888888888888888888888888
Q ss_pred Eeeeeeee
Q 017030 363 RIWKCSSL 370 (378)
Q Consensus 363 ~~~~~~~~ 370 (378)
|+.+|.+.
T Consensus 95 IG~ga~I~ 102 (192)
T TIGR02287 95 VGMNAVVM 102 (192)
T ss_pred ECCCcccC
Confidence 87776664
No 120
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.80 E-value=1.1e-07 Score=79.80 Aligned_cols=220 Identities=20% Similarity=0.226 Sum_probs=137.7
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhcCC-cEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~gi-~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
+++..|+|+|.|.+.|. .-|-+.+++|+ |||.|+++++.+++. ++|+|-+ +.+.|.+.-++. +....
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~y---gak~~ 68 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKY---GAKVF 68 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHHh---Ccccc
Confidence 45678999999999999 47999999999 999999999999875 6665544 455555554332 22110
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EE-ecCHHHHHHHHHHcCCcEEEE
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITIS 162 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~-~~d~~~~l~~h~~~~~~~ti~ 162 (378)
+. + -.-+..+ ...|.+++..+.+.+... .+.++++++-. +. ..+++++++.+.+++.+-.+.
T Consensus 69 ~~-R-p~~LA~D----------~ast~~~~lh~le~~~~~----~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 69 LK-R-PKELASD----------RASTIDAALHALESFNID----EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred cc-C-ChhhccC----------chhHHHHHHHHHHHhccc----cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 10 0 0001100 123445666666666431 34477777776 44 456999999999988887777
Q ss_pred EeecCCCCCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCC
Q 017030 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (378)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 242 (378)
+.+.+..+ |-.... ++|.+..+.+.+.... +.+.....+..+..+|+++.+.|.+ .
T Consensus 133 a~e~e~~p---~k~f~~-~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~--- 188 (228)
T COG1083 133 AVECEHHP---YKAFSL-NNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---N--- 188 (228)
T ss_pred Eeecccch---HHHHHh-cCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---c---
Confidence 77765421 222222 3477888877664321 1111123466788999999998742 1
Q ss_pred CCCchhcccccccccccceEEEEec-ceEEecCCHHHHHHHHHhccc
Q 017030 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (378)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~ 288 (378)
..-| ......|..+ ....||++..|+..|+..+..
T Consensus 189 -~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 -DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred -Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 2233444444 457899999999999887754
No 121
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.79 E-value=5.6e-07 Score=86.16 Aligned_cols=335 Identities=15% Similarity=0.159 Sum_probs=175.3
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecC-eeeeeeeehhhhhh----cCCc-EEEEEeecC-hhhHHHHHHhhccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNY 79 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g-~~pli~~~l~~l~~----~gi~-~I~iv~~~~-~~~i~~~l~~~~~~ 79 (378)
.++.+|.||||.||||+ .+.||.|+|+.+ + ++++..++++.+ .|.+ -.+|-++.. .+...++++++-.+
T Consensus 78 ~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~ 153 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS 153 (469)
T ss_pred hcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC
Confidence 56789999999999998 789999999954 6 898888877654 3433 335555544 45688888754211
Q ss_pred CCCcc-cCCce-EEEeccccC----CCcC-CC-ccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEecCHHHHH
Q 017030 80 GSGVT-FGDGC-VEVLAATQT----PGEA-GK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (378)
Q Consensus 80 ~~~~~-~~~~~-i~i~~~~~~----~~~~-~~-~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~d~~~~l 149 (378)
..... |.... ..+...... .+.. .. -.+.|.|+....... .+++....+.+.+.+.+.|.+...-=-.++
T Consensus 154 ~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~l 233 (469)
T PLN02474 154 NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKIL 233 (469)
T ss_pred ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHH
Confidence 11111 11000 011100000 0000 01 124566665443322 122222334689999999996543334678
Q ss_pred HHHHHcCCcEEEEEeecCCCCCCcceEEEECCCC--CEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEE
Q 017030 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (378)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~ 227 (378)
.+|.++++++++=+++..... ..-|.+.. .+| +++++.+-|...... +. + .......|+..++
T Consensus 234 g~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~-f~-~-----------~~kf~~fNtnn~w 298 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNE-FK-S-----------IEKFKIFNTNNLW 298 (469)
T ss_pred HHHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHh-hc-c-----------cccceeeeeeeEE
Confidence 888889999888776544321 22354433 345 567777766542210 00 0 0123567999999
Q ss_pred EeHHHHHHHHhhhCCCCC------ch-hccccc------ccccc-cceEEEEec-ceEEecCCHHHHHHHHHhcccCCCC
Q 017030 228 FKKEILLNLLRWRFPTAN------DF-GSEIIP------ASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPM 292 (378)
Q Consensus 228 ~~~~~l~~~l~~~~~~~~------~~-~~~~l~------~l~~~-~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~~~~ 292 (378)
|+-+.++++++....... .. ...+++ +++.- ....++..+ ..|..+.+..|++.+..++..-..+
T Consensus 299 ~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~ 378 (469)
T PLN02474 299 VNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDG 378 (469)
T ss_pred EEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccC
Confidence 999999887653211000 00 000111 11110 122233222 3478888888888777765433211
Q ss_pred cc------ccCCCCcEEccC-----------CCCCCcee--eCcee-eeeEEecCcEEcceEEeeceEcCCCEECCCCEE
Q 017030 293 FS------FYDATKPIYTSR-----------RNLPPSKI--DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANVHL 352 (378)
Q Consensus 293 ~~------~~~~~~~i~~~~-----------~i~~~~~i--~~~~i-~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i 352 (378)
.. ..+....|.-+. .=+-|+.+ +..+| .+...|+|+++.|.++...-=|+...|-+|+.+
T Consensus 379 ~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~~iPsl~~~d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l 458 (469)
T PLN02474 379 FVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELDSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVL 458 (469)
T ss_pred eEEecCcccCCCCCcEEECcccccHHhHHHhcCCCCCcccCCeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEe
Confidence 10 111111111000 00222222 23344 378889999988533322222445678888888
Q ss_pred eeeeeCCC
Q 017030 353 KVSPANPL 360 (378)
Q Consensus 353 ~~sIi~~~ 360 (378)
+|.++..+
T Consensus 459 ~~~~~~~~ 466 (469)
T PLN02474 459 ENKDINGP 466 (469)
T ss_pred cceeeccc
Confidence 88877655
No 122
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.78 E-value=2.3e-08 Score=86.09 Aligned_cols=79 Identities=22% Similarity=0.094 Sum_probs=58.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.+.+.+.+.+.+.|+++++| .++.|.++.||++|.|+ ++.+.+|+|+++++|++++.|. +++|+++++|++++.+..
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44455566666777777777 67778888888888888 7888888888888888888886 577777777777666544
Q ss_pred ee
Q 017030 372 SV 373 (378)
Q Consensus 372 ~~ 373 (378)
++
T Consensus 103 s~ 104 (193)
T cd03353 103 ST 104 (193)
T ss_pred ce
Confidence 33
No 123
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.78 E-value=2.5e-08 Score=72.51 Aligned_cols=69 Identities=19% Similarity=-0.012 Sum_probs=56.7
Q ss_pred cCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEee
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIW 365 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~ 365 (378)
+.+.+.+. ++.+++++.| +++.+.+|+|+++|.|+ ++.|.+|+|+++++|++++.|. ++++++++.|++
T Consensus 8 I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 8 IGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred ECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 34445554 5778888888 67899999999999999 8999999999999999998887 477777777654
No 124
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.70 E-value=6.4e-08 Score=73.80 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=54.6
Q ss_pred CcEEccCCCCCCcee-eCceee-eeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 300 KPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
..+...+.+++.+.| +++.|. +++||++|+|+ +.|++|+|+++++|++++.|.+++|++++.|+.++..
T Consensus 24 ~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig-~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~ 94 (101)
T cd05635 24 AVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIG-GEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNN 94 (101)
T ss_pred CEEeCCCEECCCCEECCCCEEeCcCEECCCCEEC-CEECccEEcCCCEecCcCEEeeeEECCCCEECCCcee
Confidence 334444445555555 466665 58999999997 5789999999999999999999999999999998754
No 125
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.67 E-value=7.5e-08 Score=79.63 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=50.3
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEEee-----ceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i~~-----SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++.+.+..+..+++++.| +++.|.. ++||++|.|+ ++.|.+ |+||+++.|+.+++|.+++|++++.|
T Consensus 7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~I 86 (153)
T cd04645 7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLI 86 (153)
T ss_pred EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEE
Confidence 45556666666666666666 4555543 4777777777 677766 37777777777777777777776666
Q ss_pred eeeeeee
Q 017030 364 IWKCSSL 370 (378)
Q Consensus 364 ~~~~~~~ 370 (378)
+.++.+.
T Consensus 87 g~~~~v~ 93 (153)
T cd04645 87 GMGAIIL 93 (153)
T ss_pred CCCCEEc
Confidence 6555554
No 126
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.66 E-value=1.1e-07 Score=88.29 Aligned_cols=101 Identities=18% Similarity=0.028 Sum_probs=51.6
Q ss_pred eEEecCCHHHHHHHHHhcccCCC-CccccCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE-eeceEcCC
Q 017030 269 YWEDIGTIRSFFEANLALTAHPP-MFSFYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI-EHSVVGIR 343 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~~~-~~~~~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i-~~SiI~~~ 343 (378)
.+.-+++|...+..-..++.+.+ ....++|.+.+.+++.++++++| +++.| .++.||++|.|+ ++.| .++.||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 46667888766554445553321 12345555556555555555555 33333 234444444444 4444 34555555
Q ss_pred CEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 344 SRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 344 ~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
|+|++++.|. +|+|++++.|+.+|.|
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEE
Confidence 5555555554 4555555555555555
No 127
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.65 E-value=8.2e-08 Score=82.29 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=53.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEE-----eeceEcCCCEECCCCEEeeeeeCCCCeE
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKVSPANPLCRR 363 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i-----~~SiI~~~~~Ig~~~~i~~sIi~~~~~~ 363 (378)
++++++.+..++.|++++.| .++.|.. .+||++|.|+ +|.| .+|+|+++++||.++.|.+|+|++++.|
T Consensus 18 ~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~I 97 (196)
T PRK13627 18 FVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALV 97 (196)
T ss_pred EECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEE
Confidence 55666666777777777777 5666643 2444444444 4443 4688888888888888888888888888
Q ss_pred eeeeeeee
Q 017030 364 IWKCSSLC 371 (378)
Q Consensus 364 ~~~~~~~~ 371 (378)
+.++.+..
T Consensus 98 G~ga~V~~ 105 (196)
T PRK13627 98 GMNSVIMD 105 (196)
T ss_pred CcCCccCC
Confidence 88777643
No 128
>PLN02296 carbonate dehydratase
Probab=98.63 E-value=8.9e-08 Score=85.87 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=56.1
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEEe-----------eceEcCCCEECCCCEEeeee
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIE-----------HSVVGIRSRINANVHLKVSP 356 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i~-----------~SiI~~~~~Ig~~~~i~~sI 356 (378)
.++.+++.+...+.|++++.| .++.|.. ++||++|.|+ ++.|. +|+||++|+||.+|.|.+|+
T Consensus 59 ~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~ 138 (269)
T PLN02296 59 AFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCT 138 (269)
T ss_pred CEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCE
Confidence 355666666666777777777 5666653 4688888887 67763 57888888888888888888
Q ss_pred eCCCCeEeeeeeee
Q 017030 357 ANPLCRRIWKCSSL 370 (378)
Q Consensus 357 i~~~~~~~~~~~~~ 370 (378)
|++++.|+.+|.+.
T Consensus 139 Igd~v~IG~ga~I~ 152 (269)
T PLN02296 139 VEDEAFVGMGATLL 152 (269)
T ss_pred ECCCcEECCCcEEC
Confidence 88877777777664
No 129
>PLN02472 uncharacterized protein
Probab=98.63 E-value=8.5e-08 Score=84.87 Aligned_cols=75 Identities=8% Similarity=0.070 Sum_probs=43.0
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeee----eEEecCcEEc-ceEE-----------eeceEcCCCEECCCCEEeeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----------EHSVVGIRSRINANVHLKVSPA 357 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~----s~Ig~~~~I~-~~~i-----------~~SiI~~~~~Ig~~~~i~~sIi 357 (378)
++.+++.+..++.|+.++.| .++.++. ..||++|.|+ +|.| .+++||++|+||++|.|.+|+|
T Consensus 67 ~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~I 146 (246)
T PLN02472 67 YVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTI 146 (246)
T ss_pred EECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEE
Confidence 44445555555555555555 3444331 3455555555 4444 2467777777777777777777
Q ss_pred CCCCeEeeeeee
Q 017030 358 NPLCRRIWKCSS 369 (378)
Q Consensus 358 ~~~~~~~~~~~~ 369 (378)
++++.|+.+|.+
T Consensus 147 gd~v~IG~~svI 158 (246)
T PLN02472 147 EPECIIGQHSIL 158 (246)
T ss_pred cCCCEECCCCEE
Confidence 777777666655
No 130
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.62 E-value=1.1e-07 Score=81.94 Aligned_cols=68 Identities=12% Similarity=-0.053 Sum_probs=51.8
Q ss_pred EccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 303 YTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.+.+.+++++.| +.+.+. ++.||+||.|+ ++.|.+++|+++++|++++.|.+|+|+++++|+.+|.+.
T Consensus 13 ~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~ 83 (193)
T cd03353 13 DGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLR 83 (193)
T ss_pred cCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEc
Confidence 344455555555 355554 67888888888 788888888888888888888888888888888887775
No 131
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.61 E-value=1.5e-07 Score=90.17 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=118.9
Q ss_pred CeEEEEcCCe-EEecCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCC---------CEEEEEecCCccch--
Q 017030 130 EDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDL-- 197 (378)
Q Consensus 130 ~~~lv~~gD~-~~~~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ek~~~~~~-- 197 (378)
.-++|..+|. +...+ ...+. + .+++++++..+.+..-..++|+...|+++ .+.++..||..+.-
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 3579999994 33333 12222 1 23678888888776556889999999888 78889999987652
Q ss_pred -hcccccchhccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC----------------CCchhcccccccccc--
Q 017030 198 -KAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT----------------ANDFGSEIIPASANE-- 258 (378)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~----------------~~~~~~~~l~~l~~~-- 258 (378)
.+...+ ...+.++|++.|+.+..+.++...... ..++..|++..|..+
T Consensus 130 ~~av~~~-------------~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t 196 (414)
T PF07959_consen 130 SGAVLPD-------------GNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDAT 196 (414)
T ss_pred CCcccCC-------------CcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCcc
Confidence 122211 234568999999998777765432110 112233455444422
Q ss_pred ------------------------------cceEEEEec-ceEEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCC
Q 017030 259 ------------------------------QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRR 307 (378)
Q Consensus 259 ------------------------------~~i~~~~~~-~~~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~ 307 (378)
.++.+...+ +.|+=+||-.+|+.-...- +... +. ...+.....
T Consensus 197 ~e~~~~~~~~~~~~~~l~~aR~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~----~~l~-~~-~~~~~~~~~ 270 (414)
T PF07959_consen 197 EEYPENTSNVLKEESELREARQKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD----SELG-IM-RRKFSHSPA 270 (414)
T ss_pred ccCccccCCCcchhHHHHHHHHHHHHHhhhccccccccCCceEEEecCCHHHHHhhccC----cccc-cc-eeeeecccc
Confidence 122222222 3445556655544432211 0000 00 000111010
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCC
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPL 360 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~ 360 (378)
..+..+ .++.|.||+|..++.|+ ++.|++|.|+.+++||++|.|.++-+...
T Consensus 271 -~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 271 -TTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred -ccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 112223 46678888888888888 78888888888888888888888755543
No 132
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.61 E-value=1.1e-07 Score=82.27 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=56.7
Q ss_pred CCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeee
Q 017030 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 308 i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~ 371 (378)
+++++.| .++.+.++.||+||.|+ +|.|.+|+||++++|++++.|.+++||++|.|+++|.+..
T Consensus 5 ~~~~~~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 5 LSPEPTLHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred cCCCCeECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 3556666 56777889999999999 8999999999999999999999999999999999998864
No 133
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.60 E-value=1.1e-07 Score=92.94 Aligned_cols=64 Identities=5% Similarity=-0.014 Sum_probs=46.8
Q ss_pred CCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 306 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+.|+.++.| .++.|. +|+||++|.|| ++.+.+++|++++.|+.++.+.+++|++++.|+.++.+
T Consensus 304 ~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig~~~~~ 370 (446)
T PRK14353 304 AHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIGAGTIT 370 (446)
T ss_pred cEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEECCceee
Confidence 445555555 355554 78888888888 78888888888888888888877777777777776543
No 134
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.57 E-value=2.6e-07 Score=77.17 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=24.8
Q ss_pred EecCcEEc-ceEEeeceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeee
Q 017030 324 ISHGSFIT-SSFIEHSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 324 Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~ 370 (378)
||++|.|+ ++.+.+++||++|.||.+|.| .+++|++++.|+.+|.+.
T Consensus 69 IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~ 117 (164)
T cd04646 69 IGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLP 117 (164)
T ss_pred ECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEEC
Confidence 45555554 455555555555555555555 335555555555555443
No 135
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.55 E-value=2.9e-07 Score=77.29 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=35.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceee-----eeEEecCcEEc-ceEEe-----eceEcCCCEECCCCEEee-eeeCCCC
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKV-SPANPLC 361 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~-----~s~Ig~~~~I~-~~~i~-----~SiI~~~~~Ig~~~~i~~-sIi~~~~ 361 (378)
++++.+.+..+..+++++.| +++.|. ++.||++|.|+ ++.+. ++.||+++.|+.++.|.+ ++|++++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~ 89 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNC 89 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCC
Confidence 33444444444444444444 344432 24455555555 44442 334444444444444443 4444444
Q ss_pred eEeeeeeeeeee
Q 017030 362 RRIWKCSSLCSV 373 (378)
Q Consensus 362 ~~~~~~~~~~~~ 373 (378)
.|+.+|.+..++
T Consensus 90 ~Ig~~~~I~~~~ 101 (167)
T cd00710 90 FIGFRSVVFNAK 101 (167)
T ss_pred EECCCCEEECCE
Confidence 444444444333
No 136
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.55 E-value=1.6e-07 Score=91.20 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=60.3
Q ss_pred CCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcC----------------C---CEECCCCEEeeeeeCCCCeEee
Q 017030 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI----------------R---SRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 306 ~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~----------------~---~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.|+++|.|+++.|++|+|++||.|+ +|.|.+|+|+. + ++||++|+|++++|++++.|++
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~ 395 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGK 395 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECC
Confidence 78899999998899999999999999 89999999977 3 3899999999999999999999
Q ss_pred eeeee
Q 017030 366 KCSSL 370 (378)
Q Consensus 366 ~~~~~ 370 (378)
+|.+.
T Consensus 396 ~~~i~ 400 (436)
T PLN02241 396 NVVII 400 (436)
T ss_pred CcEEe
Confidence 99885
No 137
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.55 E-value=1.3e-07 Score=92.63 Aligned_cols=49 Identities=22% Similarity=0.105 Sum_probs=23.4
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++||+||.|+ ++.|.+|+||++|+|++++.|.+|+|+++++|+++|++.
T Consensus 280 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~ 329 (451)
T TIGR01173 280 VKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLR 329 (451)
T ss_pred eEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEEC
Confidence 4444444444 444444444444444444444444444444444444443
No 138
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.54 E-value=2.8e-07 Score=72.74 Aligned_cols=78 Identities=15% Similarity=0.030 Sum_probs=57.6
Q ss_pred cCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE----------------eeceEcCCCEECCCCEEee-e
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI----------------EHSVVGIRSRINANVHLKV-S 355 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i----------------~~SiI~~~~~Ig~~~~i~~-s 355 (378)
+.+...+.+.+.|++++.| .++.+ .++.||++|.|+ ++.+ .+++|+++|.||.++.+.. +
T Consensus 7 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~ 86 (119)
T cd03358 7 IGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGV 86 (119)
T ss_pred ECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCc
Confidence 3344455556666777777 46666 478888888888 6654 4578899999999988865 8
Q ss_pred eeCCCCeEeeeeeeeeee
Q 017030 356 PANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 356 Ii~~~~~~~~~~~~~~~~ 373 (378)
.|++++.|+.++.+..++
T Consensus 87 ~ig~~~~i~~~~~v~~~i 104 (119)
T cd03358 87 TIGEYALVGAGAVVTKDV 104 (119)
T ss_pred EECCCCEEccCCEEeCcC
Confidence 888898888888877654
No 139
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.53 E-value=4e-07 Score=82.20 Aligned_cols=97 Identities=15% Similarity=0.022 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEE-eeceEcCCCEEC
Q 017030 273 IGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFI-EHSVVGIRSRIN 347 (378)
Q Consensus 273 i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig 347 (378)
..+|.-.+....+++.+. ....-+.+.+.+.+.+.+++++.| .++.| .++.||+||.|+ ++.| .++.||++++|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 344555555555555432 212233444445555555554444 23333 234444444444 2111 134444444444
Q ss_pred CCCEEee-eeeCCCCeEeeeeee
Q 017030 348 ANVHLKV-SPANPLCRRIWKCSS 369 (378)
Q Consensus 348 ~~~~i~~-sIi~~~~~~~~~~~~ 369 (378)
+||.|.. +.||++|.|+.++.|
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavI 180 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVI 180 (338)
T ss_pred CCCEEecCcEECCceEECCCCEE
Confidence 4444443 444444444444443
No 140
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.52 E-value=1.5e-07 Score=92.15 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=48.3
Q ss_pred CCCCCCcee-eCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 306 RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.|+++++| +++.+.+|+||++|.|| ++.|. +|+|+++|+||+++.|.+|+|++++++...+.+..++|
T Consensus 305 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~i 376 (456)
T PRK14356 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEI 376 (456)
T ss_pred eEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEE
Confidence 334444444 35566677778888887 67775 67788888888888888888888888777776655554
No 141
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.50 E-value=4.6e-07 Score=78.37 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=46.8
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK 353 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~ 353 (378)
.+++.+.+. .+.|++++.| .++.+.+|+||++|.|+ ++.+.+++||++|.|+++++|.
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 455666664 4778888888 57888899999999998 8888889999999999888874
No 142
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.50 E-value=2.6e-06 Score=88.16 Aligned_cols=197 Identities=20% Similarity=0.246 Sum_probs=125.5
Q ss_pred eEEEEcCCeEEecC--HHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCC--CCEEEEEecCCccchhcccccchh
Q 017030 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 206 (378)
Q Consensus 131 ~~lv~~gD~~~~~d--~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~--~~v~~~~ek~~~~~~~~~~~~~~~ 206 (378)
-++|..||++..++ +.+ -..++++.+....+..-.+++|++..|.+ +.+..+..||..+.-.++..+
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~--- 224 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKT--- 224 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcC---
Confidence 68999999866554 111 22356666666655545678999999877 578888889987664443332
Q ss_pred ccccccccccCcceeeeeEEEEeHHHHHHHHhhhCCC------CCchhcccccccc----------cccceEEEEec-ce
Q 017030 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT------ANDFGSEIIPASA----------NEQFLKAYLFN-DY 269 (378)
Q Consensus 207 ~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~------~~~~~~~~l~~l~----------~~~~i~~~~~~-~~ 269 (378)
...+.++|+|+|+.+..+.++.....+ ..++-.|++..|- +..++...... +-
T Consensus 225 ----------~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 225 ----------HLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred ----------CeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 235789999999999887666542211 1233345554433 23455666654 46
Q ss_pred EEecCCHHHHHHHHHhcccCCCCccccCCCCcEEccCCCCCCceeeCceeeeeEEecCcEEc-c-eEEeeceEcCCCEEC
Q 017030 270 WEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-S-SFIEHSVVGIRSRIN 347 (378)
Q Consensus 270 ~~~i~t~~~~~~a~~~~l~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~-~~i~~SiI~~~~~Ig 347 (378)
|+-+||-++|+.....+..... ....+.....-..| .+.+.||+|..++.++ + ..|+||.|+.+++||
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~------~~~~i~~~~~~~~~----~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig 364 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVT------DQRRIMHRKVKPHP----AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLA 364 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhh------hhhhhhccccCCCC----ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEc
Confidence 8889999988864433322110 00111111111111 2467899999999999 5 458899999999999
Q ss_pred CCCEEeeee
Q 017030 348 ANVHLKVSP 356 (378)
Q Consensus 348 ~~~~i~~sI 356 (378)
.++.|.++.
T Consensus 365 ~~~Iisgv~ 373 (974)
T PRK13412 365 SRSIITGVP 373 (974)
T ss_pred CCcEEeccc
Confidence 999998874
No 143
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.50 E-value=2.1e-07 Score=87.97 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=39.1
Q ss_pred EEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-----eeeeCCCCeEeee
Q 017030 302 IYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-----VSPANPLCRRIWK 366 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-----~sIi~~~~~~~~~ 366 (378)
+.+++.+.+|++| +++.|.+|+|+.+|.|| +|.|.+|+|+++|+||++|+|. +|+|+++++|+.+
T Consensus 245 i~~~~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~ 316 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGV 316 (353)
T ss_pred cCCCCEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCC
Confidence 3445556666666 56666666666666666 6666666666666666666654 5555555555544
No 144
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.49 E-value=9e-07 Score=76.50 Aligned_cols=35 Identities=11% Similarity=-0.158 Sum_probs=16.1
Q ss_pred eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 337 HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
++.|+++|+||.++.|. ++.|++++.|+.++.++.
T Consensus 153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 34444455555444443 244444444444444443
No 145
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.49 E-value=4.4e-07 Score=75.18 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=55.4
Q ss_pred CCCCCCcee-eCcee-----eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeee
Q 017030 306 RRNLPPSKI-DDSKI-----VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLC 371 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i-----~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~ 371 (378)
..|++++.| +++.| .+|+||++|.|+ ++.+.+++||++|.||.++.|.+ ++|++++.|+.++.+..
T Consensus 40 i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 40 IVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred EEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 456666666 46777 679999999999 89999999999999999999977 88899988888876653
No 146
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.47 E-value=3.6e-07 Score=82.35 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=31.6
Q ss_pred eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEeee--------eeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKVS--------PANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~s--------Ii~~~~~~~~~~~~~ 370 (378)
++.||+||.|+ ++.|. .++||++++|+++|.|..+ +|++++.+..+|++.
T Consensus 50 ~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~ 121 (262)
T PRK05289 50 HTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVA 121 (262)
T ss_pred ccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEEC
Confidence 46666666666 56664 3677777777777777653 456655555555554
No 147
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.47 E-value=5.3e-07 Score=77.06 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCCCcee-eCcee-----eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 308 NLPPSKI-DDSKI-----VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 308 i~~~~~i-~~~~i-----~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
|++++.| +++.| .+|+||++|.|+ ++.|.+|+|+++|.||.++.|.+ ++|++++.|+.+|.+...
T Consensus 50 Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 50 LKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 3455555 45555 468899999998 78889999999999998888855 888888888888877654
No 148
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.47 E-value=7.5e-07 Score=73.63 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=53.7
Q ss_pred CCCCCcee-eCceeee-----eEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 307 RNLPPSKI-DDSKIVD-----SIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~~-----s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
.|++++.| +++.|.+ ++||++|.|+ ++.+.+++|++++.|+.++.|. +++|++++.|+.++.+..+
T Consensus 40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~ 113 (153)
T cd04645 40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPG 113 (153)
T ss_pred EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCC
Confidence 56667777 5677765 5999999999 8999999999999999999997 6888888888877766543
No 149
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.45 E-value=3.9e-07 Score=89.30 Aligned_cols=73 Identities=19% Similarity=0.065 Sum_probs=55.6
Q ss_pred ccCCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeee
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKC 367 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~ 367 (378)
.+.+.+.+..++.|++++.| .++.|.+|+||+||+|+ ++.+.+|+|++++.||+++.|.. +.|+++++|+++|
T Consensus 276 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 276 TIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred EEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence 34445556666677777777 67888999999999999 89999999999999988887763 6666666555443
No 150
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.42 E-value=1.2e-06 Score=72.34 Aligned_cols=65 Identities=11% Similarity=-0.092 Sum_probs=52.0
Q ss_pred CCCCCcee-eCceeee-----eEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 307 RNLPPSKI-DDSKIVD-----SIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~~-----s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
.|++++.| .++.|.. ++||++|.|+ ++.+.+++|++++.||.++.+. +++|++++.++.+|.+..
T Consensus 41 ~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 41 YIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred EECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 56666666 5666653 7899999998 8889999999999999999884 488888888888877664
No 151
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.41 E-value=3.1e-05 Score=67.89 Aligned_cols=183 Identities=22% Similarity=0.297 Sum_probs=102.4
Q ss_pred eEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCc
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (378)
.|||+|.|.++|+ .-|.|.+++|+ |||+|+++.+.++ .+++|+|.+ ..+++.+.+.+. + ..
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~~---g------~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEEY---G------AK 62 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHHT---T------SE
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHHc---C------Ce
Confidence 3899999999999 48999999999 9999999999987 568988877 344555555431 1 11
Q ss_pred eEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc-EEEEEee
Q 017030 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD-ITISCLP 165 (378)
Q Consensus 89 ~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~-~ti~~~~ 165 (378)
+........ .++......+..+..+ ..+.++.+.||. +.+.. +..+++.+.+..++ +.-...+
T Consensus 63 -v~~~~~~~~---------~~~~r~~~~~~~~~~~----~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~ 128 (217)
T PF02348_consen 63 -VIFRRGSLA---------DDTDRFIEAIKHFLAD----DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDP 128 (217)
T ss_dssp -EEE--TTSS---------SHHHHHHHHHHHHTCS----TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEE
T ss_pred -eEEcChhhc---------CCcccHHHHHHHhhhh----HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccc
Confidence 222221111 2343333333333321 134899999999 66665 88999988888765 3222222
Q ss_pred cCC-C--CCCcceEEEECCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEEEeHH-HHHHH
Q 017030 166 MDD-S--RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNL 236 (378)
Q Consensus 166 ~~~-~--~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~ 236 (378)
... . .....-....+.++....+.+.......+. +.+.. .......++|.++.. .+.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 191 (217)
T PF02348_consen 129 VGSSVEIFNFNPLKVLFDDDGLELYFSEHVIPYIRRN-----------PEEFK-YFYIRQVGIYAFRKEMFLERF 191 (217)
T ss_dssp ECSHHHHTSTTSTEEEECTTSBEEEEESSESSECHHH-----------HCSSS-STEEEEEEEEEEEHHHHHHHH
T ss_pred ccchhhcccccceEEEeccccchhhcccCCCcccccc-----------ccccc-ccccccccccccccccccccc
Confidence 221 0 011122223344455555555443322110 00000 124567899999997 44333
No 152
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.41 E-value=9.2e-06 Score=73.90 Aligned_cols=214 Identities=12% Similarity=0.149 Sum_probs=122.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh----cCCc-EEEEEeecC-hhhHHHHHHhhccCC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNYG 80 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~----~gi~-~I~iv~~~~-~~~i~~~l~~~~~~~ 80 (378)
.++.+|+||||.||||+ .+.||.|+||....++++..++++.. .|.+ ..+|-++.. .+...++++++. .
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~- 76 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-G- 76 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-C-
Confidence 46788999999999997 78999999996533899999988764 3432 445556544 556888887643 1
Q ss_pred CCcc---cCCceE-EEec-----cccCCCcCC-CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEecCHHHH
Q 017030 81 SGVT---FGDGCV-EVLA-----ATQTPGEAG-KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDF 148 (378)
Q Consensus 81 ~~~~---~~~~~i-~i~~-----~~~~~~~~~-~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~d~~~~ 148 (378)
.... |....+ .+.. ..+..+... .-.+.|.|+....... .+++....+.+.+.+.+.|.+...-=-.+
T Consensus 77 ~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~ 156 (300)
T cd00897 77 VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRI 156 (300)
T ss_pred CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHH
Confidence 1111 100000 0000 000000000 1124466655443321 12222223468999999999654323467
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCCEEEEEecCCccchhcccccchhccccccccccCcceeeeeEEE
Q 017030 149 VQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (378)
Q Consensus 149 l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy~ 227 (378)
+.+|..+++++++=+.+...+ ...-|.+.. |..-+|+++.|-|..... ...- .......+++.++
T Consensus 157 lg~~~~~~~~~~~evv~Kt~~-dek~G~l~~~~g~~~vvEyse~p~e~~~-~~~~------------~~~~~~~nt~n~~ 222 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKTRA-DVKGGTLIQYEGKLRLLEIAQVPKEHVD-EFKS------------IKKFKIFNTNNLW 222 (300)
T ss_pred HHHHHhcCCceEEEEeecCCC-CCcccEEEEECCEEEEEEeccCCHHHHH-hhcC------------cccceEEEEeEEE
Confidence 888899999988866655432 233454443 322356777776654321 0000 0123467999999
Q ss_pred EeHHHHHHHHhh
Q 017030 228 FKKEILLNLLRW 239 (378)
Q Consensus 228 ~~~~~l~~~l~~ 239 (378)
|+-++|+++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999999887654
No 153
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.40 E-value=6.2e-07 Score=74.72 Aligned_cols=75 Identities=17% Similarity=0.008 Sum_probs=57.2
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...+.+.+.|+++++|. ++.|. ++.||+||.|+ ++.+.. ++||++|+||.++.|.+ +.|++++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 45667777788888883 34553 47888888887 666653 58999999999999887 778999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+.++.+..+|
T Consensus 141 ga~s~V~~dv 150 (162)
T TIGR01172 141 GANSVVLKDV 150 (162)
T ss_pred CCCCEECCCC
Confidence 9888776654
No 154
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.40 E-value=4e-07 Score=89.55 Aligned_cols=105 Identities=13% Similarity=-0.038 Sum_probs=72.8
Q ss_pred EEecCCHHHHHHHHHhc-ccCCC---Cccc-----------cCCCCc-EEccCCCCCCcee-eCceee-eeEEecCcEEc
Q 017030 270 WEDIGTIRSFFEANLAL-TAHPP---MFSF-----------YDATKP-IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT 331 (378)
Q Consensus 270 ~~~i~t~~~~~~a~~~~-l~~~~---~~~~-----------~~~~~~-i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~ 331 (378)
.+.+.++++|+.++..+ +.... +... +++... +.+.+.|++++.| .++.|. ++.||+||.|+
T Consensus 219 ~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~ 298 (481)
T PRK14358 219 AFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG 298 (481)
T ss_pred EEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC
Confidence 44566788888777544 32211 1111 112111 2345556666666 466665 46699999999
Q ss_pred -ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee-eeeE
Q 017030 332 -SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL-CSVI 374 (378)
Q Consensus 332 -~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~-~~~~ 374 (378)
+|.|.+|+||++|+|++++.|.+++|++++.|+.+|.+. ++++
T Consensus 299 ~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~I 343 (481)
T PRK14358 299 AYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVL 343 (481)
T ss_pred CCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEE
Confidence 899999999999999999999999999999999998886 3444
No 155
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.40 E-value=4.9e-07 Score=88.59 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=44.6
Q ss_pred CCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 307 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
.+++++.| .++.|. +++||+||.|+ ++.|.+|+||++|+|++++.|.+|+|+++++|+++|.+.
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~ 333 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLR 333 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEe
Confidence 34555555 455554 56777777777 677777777777777777777777777777777777775
No 156
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.39 E-value=1.1e-06 Score=73.33 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=58.0
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceee----eeEEecCcEEc-ceEEeec-----------eEcCCCEECCCCEEeeee
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEHS-----------VVGIRSRINANVHLKVSP 356 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~----~s~Ig~~~~I~-~~~i~~S-----------iI~~~~~Ig~~~~i~~sI 356 (378)
.++++.+.+.++..+++++.| .++.+. .+.||++|.|+ ++.|.++ .||+++.++.++.|.+++
T Consensus 6 ~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~ 85 (164)
T cd04646 6 AVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALK 85 (164)
T ss_pred cEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeE
Confidence 355666666677777777777 566664 35899999998 8888765 578888888888888888
Q ss_pred eCCCCeEeeeeeeee
Q 017030 357 ANPLCRRIWKCSSLC 371 (378)
Q Consensus 357 i~~~~~~~~~~~~~~ 371 (378)
|++++.|+.+|.+..
T Consensus 86 IGd~~~Ig~~a~I~~ 100 (164)
T cd04646 86 IGNNNVFESKSFVGK 100 (164)
T ss_pred ECCCCEEeCCCEECC
Confidence 887777777777643
No 157
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.39 E-value=1.4e-06 Score=62.80 Aligned_cols=62 Identities=16% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCCCCcee-eCceee-eeEEecCcEEc-ceEEeec---------eEcCCCEECCCCEEee-eeeCCCCeEeeeee
Q 017030 307 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHS---------VVGIRSRINANVHLKV-SPANPLCRRIWKCS 368 (378)
Q Consensus 307 ~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~S---------iI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~ 368 (378)
++++++.| .++.+. ++.||++|.|+ ++.|.++ .|++++.|+.++.|.. +.|++++.|+.++.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~ 76 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV 76 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence 34555556 345555 48888888888 7777764 5666666665555532 44555554444443
No 158
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.38 E-value=7.2e-07 Score=80.20 Aligned_cols=65 Identities=12% Similarity=-0.040 Sum_probs=43.7
Q ss_pred cCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEee--------eeeCCC
Q 017030 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKV--------SPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~--------sIi~~~ 360 (378)
++.|++++.| .++.|. ++.||++|.|+ ++.|. +++||++|+|+++|.|.+ ++|+++
T Consensus 29 ~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~ 108 (254)
T cd03351 29 NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNN 108 (254)
T ss_pred CCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCC
Confidence 3333333333 344443 57778888887 67774 688899999999888864 667777
Q ss_pred CeEeeeeee
Q 017030 361 CRRIWKCSS 369 (378)
Q Consensus 361 ~~~~~~~~~ 369 (378)
+.|+.+|.+
T Consensus 109 ~~I~~~~~I 117 (254)
T cd03351 109 NLLMAYVHV 117 (254)
T ss_pred CEECCCCEE
Confidence 777666666
No 159
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=8.2e-07 Score=83.71 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCCCcEEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
.+.+.+.+.+.|+++|.| +++.|++|+|.++|.|+ ++.|.+|||++||+||++. .+++ +.++.+|.+.-.++
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~-----~i~d-~~~g~~~~i~~g~~ 344 (358)
T COG1208 271 GPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL-----IIGD-VVIGINSEILPGVV 344 (358)
T ss_pred CCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-----eecc-eEecCceEEcCceE
Confidence 344445555666666666 46788999999999999 8999999999999999922 2888 99999888876654
No 160
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.37 E-value=2.3e-06 Score=73.38 Aligned_cols=30 Identities=10% Similarity=-0.100 Sum_probs=11.5
Q ss_pred ceEcCCCEECCCCEEee-eeeCCCCeEeeee
Q 017030 338 SVVGIRSRINANVHLKV-SPANPLCRRIWKC 367 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~ 367 (378)
++|+++|.||.++.|.. +.|++++.|+.++
T Consensus 151 ~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~ 181 (197)
T cd03360 151 VTIGEGAFIGAGATIIQGVTIGAGAIIGAGA 181 (197)
T ss_pred cEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence 33444444444433332 3333333333333
No 161
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.37 E-value=9.6e-07 Score=79.41 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=43.6
Q ss_pred cCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEe--------eeeeCCC
Q 017030 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLK--------VSPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~--------~sIi~~~ 360 (378)
.+.|++++.| .++.|. ++.||++|.|+ ++.|. +++||++|+|+++|.|. +++|+++
T Consensus 28 ~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~ 107 (254)
T TIGR01852 28 GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107 (254)
T ss_pred CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCC
Confidence 3333333434 344443 57788888887 77775 68889999999988886 4566777
Q ss_pred CeEeeeeee
Q 017030 361 CRRIWKCSS 369 (378)
Q Consensus 361 ~~~~~~~~~ 369 (378)
+.|+.+|.+
T Consensus 108 ~~I~~~~~I 116 (254)
T TIGR01852 108 NLLMAYSHI 116 (254)
T ss_pred CEECCCCEE
Confidence 666666665
No 162
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=98.35 E-value=1.2e-06 Score=78.80 Aligned_cols=73 Identities=14% Similarity=-0.026 Sum_probs=44.9
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-------------eeEEecCcEEc-ceEEe--------eceEcCCCEECCCCEE-
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-------------DSIISHGSFIT-SSFIE--------HSVVGIRSRINANVHL- 352 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-------------~s~Ig~~~~I~-~~~i~--------~SiI~~~~~Ig~~~~i- 352 (378)
.+.+.|...+.|+.++.| .++.|. ++.||++|.|+ ++.|. +++||++|.|+.++.|
T Consensus 39 ~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~ 118 (254)
T cd03351 39 GSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVA 118 (254)
T ss_pred CCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEEC
Confidence 334444445555555555 355553 57788888888 67775 3777888877777777
Q ss_pred eeeeeCCCCeEeeeeee
Q 017030 353 KVSPANPLCRRIWKCSS 369 (378)
Q Consensus 353 ~~sIi~~~~~~~~~~~~ 369 (378)
.+|+|++++.+..++.+
T Consensus 119 ~~~~IG~~~~i~~~~~i 135 (254)
T cd03351 119 HDCVIGNNVILANNATL 135 (254)
T ss_pred CCCEECCCcEECCCccc
Confidence 45666665555444433
No 163
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.34 E-value=2.7e-06 Score=79.93 Aligned_cols=50 Identities=12% Similarity=-0.066 Sum_probs=26.8
Q ss_pred eEEecCcEEc-ceEEee-ceEcCCCEECCCCEEe--------------------eeeeCCCCeEeeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLK--------------------VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~--------------------~sIi~~~~~~~~~~~~~~ 371 (378)
+.||++|.|+ ++.|.+ +.||++|+|++++.|. +++|++++.|+.+|.+..
T Consensus 149 ~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~ 220 (343)
T PRK00892 149 VKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDR 220 (343)
T ss_pred cEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEec
Confidence 4444444444 444433 3366666666666663 356666666666665544
No 164
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.33 E-value=6.3e-06 Score=79.54 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=121.8
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec---Ceeeeeeeehhhhhhc--------------CCc-EEEEEee-cChh
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GIN-KVYILTQ-YNSA 67 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~---g~~pli~~~l~~l~~~--------------gi~-~I~iv~~-~~~~ 67 (378)
.++-+|+||||.||||+ .+.||.|++|+ ++ ++++...+++.+. +.. ..+|.++ ...+
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 56778999999999998 88999999884 67 8999888876431 111 3366665 4556
Q ss_pred hHHHHHHhhccCCCCcccCCceEEEeccccCC----CcCC----------CccccCcHHHHHHHHH--HhcCCCCCCCCe
Q 017030 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTP----GEAG----------KRWFQGTADAVRQFHW--LFEDPRNKVIED 131 (378)
Q Consensus 68 ~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~----------~~~~~Gt~~al~~~~~--~i~~~~~~~~~~ 131 (378)
...++++++..++-.. ..+.+. .|.. ..+| ...|.|.|+....... .+++....+.+.
T Consensus 191 ~T~~ff~~~~~FGl~~----~~V~fF--~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~y 264 (493)
T PLN02435 191 ATRKFFESHKYFGLEA----DQVTFF--QQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKY 264 (493)
T ss_pred HHHHHHHhCCCCCCCc----cceEEE--ecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEE
Confidence 7888887543222110 011111 1110 0001 1235577766554322 233333345689
Q ss_pred EEEEcCCeEEe-cCHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE-CCCCC--EEEEEecCCccchhcccccchhc
Q 017030 132 VLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGR--VLSFSEKPKGKDLKAMAVDTTVL 207 (378)
Q Consensus 132 ~lv~~gD~~~~-~d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~--v~~~~ek~~~~~~~~~~~~~~~~ 207 (378)
+.+.+.|.+.. .---.++-++..++.++.+-+.+...+ ...-|.+.. +.+|+ |+++.|-+.......-..++.
T Consensus 265 i~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~-- 341 (493)
T PLN02435 265 VDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGR-- 341 (493)
T ss_pred EEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccc--
Confidence 99999999543 323456788888899888766554321 234566544 24454 666666553221100000010
Q ss_pred cccccccccCcceeeeeEEEEeHHHHHHHHh
Q 017030 208 GLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (378)
Q Consensus 208 ~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~ 238 (378)
...+..+.+.++|+-++|+++.+
T Consensus 342 --------L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 342 --------LRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred --------cccchhhHHHhhccHHHHHHHHH
Confidence 12355788899999999987743
No 165
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.33 E-value=1.6e-06 Score=76.49 Aligned_cols=77 Identities=9% Similarity=-0.048 Sum_probs=57.0
Q ss_pred cCCCCcEEccCCCCCCcee-------eCceee-eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEE-eeee
Q 017030 296 YDATKPIYTSRRNLPPSKI-------DDSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHL-KVSP 356 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-------~~~~i~-~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i-~~sI 356 (378)
+++.+.+...+.+.+++.| .++.|. +|+||++|.|+ ++.|.+ ++|+++|.||.++.| .++.
T Consensus 101 IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~ 180 (231)
T TIGR03532 101 IGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVR 180 (231)
T ss_pred ECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCE
Confidence 3444555555555555544 345553 89999999999 888874 889999999999998 5789
Q ss_pred eCCCCeEeeeeeeeee
Q 017030 357 ANPLCRRIWKCSSLCS 372 (378)
Q Consensus 357 i~~~~~~~~~~~~~~~ 372 (378)
|++++.|+.++.+...
T Consensus 181 Ig~~~~IgagsvV~~d 196 (231)
T TIGR03532 181 VGKGAVVAAGAIVTED 196 (231)
T ss_pred ECCCCEECCCCEEccc
Confidence 9999999888877543
No 166
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.31 E-value=2.7e-06 Score=72.98 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=38.5
Q ss_pred eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~ 373 (378)
+|+||++|.|+ ++.+.+|+|+++|.||.++.|.+ +.|++++.|+.++.+..++
T Consensus 71 ~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 71 DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred CCEECCCCEECCCcEEeeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 56777777777 77777788888888887777744 7777777777776666543
No 167
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.30 E-value=1.9e-06 Score=67.85 Aligned_cols=62 Identities=18% Similarity=0.007 Sum_probs=38.5
Q ss_pred CCcee-eCceee-eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEe----------------eeeeCCCCeEeeeeee
Q 017030 310 PPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK----------------VSPANPLCRRIWKCSS 369 (378)
Q Consensus 310 ~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~----------------~sIi~~~~~~~~~~~~ 369 (378)
+++.| .++.|. +++||+||.|+ ++.| .+|+|+++|.|++++.+. +++|++++.|+.+|.+
T Consensus 3 ~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v 82 (119)
T cd03358 3 DNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATI 82 (119)
T ss_pred CCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEE
Confidence 34444 333343 56677777776 6666 467777777777777654 4566666666666666
Q ss_pred ee
Q 017030 370 LC 371 (378)
Q Consensus 370 ~~ 371 (378)
..
T Consensus 83 ~~ 84 (119)
T cd03358 83 LP 84 (119)
T ss_pred eC
Confidence 43
No 168
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=98.30 E-value=1.5e-06 Score=80.65 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=33.7
Q ss_pred CCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe---------------------eceEcCCCEECCCCEE
Q 017030 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE---------------------HSVVGIRSRINANVHL 352 (378)
Q Consensus 297 ~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~---------------------~SiI~~~~~Ig~~~~i 352 (378)
.+...+..++.|+.+|.| .++.|. +++||++|.|+ ++.|- +++||++|.||.|+.|
T Consensus 131 ~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 131 GPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 334444445555555555 355554 56666666666 55552 4777888888888887
Q ss_pred e
Q 017030 353 K 353 (378)
Q Consensus 353 ~ 353 (378)
.
T Consensus 211 ~ 211 (324)
T TIGR01853 211 D 211 (324)
T ss_pred e
Confidence 3
No 169
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.30 E-value=2.8e-06 Score=71.27 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=28.1
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeee
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCS 368 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~ 368 (378)
+.||++|.|+ ++.|.++.|+++|.||.++.|.++.|++++.++.++.
T Consensus 83 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 83 AYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred EEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 5566666666 5666666666666666666665556666666554433
No 170
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.29 E-value=2.1e-06 Score=71.62 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=26.7
Q ss_pred eEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeee
Q 017030 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSS 369 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~ 369 (378)
+.||++|.|+ ++.+.+++|+++++||+++.|. +++|++++.++.+|.+
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V 122 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVV 122 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3566666666 5666666666666666655552 2555555555554443
No 171
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.29 E-value=9.7e-07 Score=85.83 Aligned_cols=65 Identities=15% Similarity=-0.013 Sum_probs=44.0
Q ss_pred cCCCCCCceeeCceeeeeEEecCcEEc-ceEEeeceEcCCC----------EECCCCEEeeeeeCCCCeEeeeeee
Q 017030 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRS----------RINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~----------~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
++.|+++|.|+++.+++|+||++|.|+ ++.|.+|+||++| +||+++.|.+|+|++++.|+.+|++
T Consensus 282 ~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 282 NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence 455666666666667777777777777 6777777776666 5555666667777777777666544
No 172
>PLN02472 uncharacterized protein
Probab=98.29 E-value=2e-06 Score=76.18 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=42.1
Q ss_pred eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
+++||++|.|| ++.|.+|+|+++|.||.++.|. +++|++++.|+.++.++
T Consensus 126 ~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 126 ETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred CcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 68999999999 8999999999999999998773 47777777777776665
No 173
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.28 E-value=3e-06 Score=70.67 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=38.5
Q ss_pred eeEEecCcEEc-ceEEee-------------ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH-------------SVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~-------------SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
++.||++|.|+ ++.|.. +.||+++.|++++.+.+++|++++.|+++|.+.
T Consensus 42 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig 105 (161)
T cd03359 42 TVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIG 105 (161)
T ss_pred ceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEEc
Confidence 35677777777 676654 478999999999999888888888887777663
No 174
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.28 E-value=1.1e-06 Score=81.44 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=33.0
Q ss_pred ceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 317 SKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
+.+++|.||+||.|| -+.++ +|.|+++++||++|+++++-|+.++++.-
T Consensus 316 S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~H 366 (460)
T COG1207 316 SVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGH 366 (460)
T ss_pred ceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccc
Confidence 344456666677776 56663 57777777777777777777777776543
No 175
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=1.3e-05 Score=75.71 Aligned_cols=212 Identities=19% Similarity=0.292 Sum_probs=122.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeec-Ceeeeeeeehhhhhh----cCCc-EEEEEeecChhhHHHHHHh-hccC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCIN----SGIN-KVYILTQYNSASLNRHLAR-AYNY 79 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~-g~~pli~~~l~~l~~----~gi~-~I~iv~~~~~~~i~~~l~~-~~~~ 79 (378)
.++.+|+||||+||||+ ...||.+++|. |+ ++++.+.+.+.. ++++ ..+|-++.+.++-..++.. .| +
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y-~ 178 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY-F 178 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-c
Confidence 56788999999999998 77899999999 67 999998877654 3443 4566667666555555432 22 2
Q ss_pred CC-Cccc---CCc-eEEEeccccCC--CcCC---CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEe-cCHH
Q 017030 80 GS-GVTF---GDG-CVEVLAATQTP--GEAG---KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYR-MDYM 146 (378)
Q Consensus 80 ~~-~~~~---~~~-~i~i~~~~~~~--~~~~---~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~-~d~~ 146 (378)
+. ..++ ... ..+++...... ..++ .-.|.|.|+-...... .+++....+.+.+.|.+.|.+.. .|+
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~- 257 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL- 257 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH-
Confidence 21 1111 100 01111111100 0011 1224566654433322 33332234468999999999442 333
Q ss_pred HHHHHHHHcCCcEEEEEeecCCCCCCcceEEE-ECCCCCEEEEEecCCccchhcccccchhccccccccccCcceee-ee
Q 017030 147 DFVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MG 224 (378)
Q Consensus 147 ~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 224 (378)
.++.++...+.+.++=++..... ...-|++. .|..-+++.+.+-|...+... .-+ +- ......+ .+
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~-~s~--------~~--~~~~n~Nni~ 325 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEF-TSD--------GK--LKYFNTNNIW 325 (472)
T ss_pred HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhh-ccc--------cc--eeeeccccce
Confidence 67888899999888877664432 34456654 676678999988877422100 000 00 0112334 78
Q ss_pred EEEEeHHHHHHH
Q 017030 225 VYLFKKEILLNL 236 (378)
Q Consensus 225 iy~~~~~~l~~~ 236 (378)
+|+++-.++.+.
T Consensus 326 l~~~~~~~l~~~ 337 (472)
T COG4284 326 LHLFSVKFLKEA 337 (472)
T ss_pred eehhHHHHHHhh
Confidence 999998877654
No 176
>PLN02296 carbonate dehydratase
Probab=98.26 E-value=2.7e-06 Score=76.39 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=50.3
Q ss_pred CCCCCcee-eCcee-----------eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 307 RNLPPSKI-DDSKI-----------VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 307 ~i~~~~~i-~~~~i-----------~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
.|++++.| +++.| .+|+||++|.|+ ++.|.+|+|+++|.||.++.|. ++.|++++.|+.++.+..+
T Consensus 93 ~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 93 SVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred EECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 45555555 34444 368999999999 8999999999999999998884 4777777777777766554
No 177
>PLN02694 serine O-acetyltransferase
Probab=98.25 E-value=1.6e-06 Score=77.64 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=53.0
Q ss_pred cEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 301 PIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 301 ~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
.|++.+.|+++++|+ ++.|. +++||+||.|. ++.+ .+++||++|.||.||.| .++.|+++++|+.
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 456667777777774 34443 45666666665 4444 46799999999999999 6789999999999
Q ss_pred eeeeeeee
Q 017030 366 KCSSLCSV 373 (378)
Q Consensus 366 ~~~~~~~~ 373 (378)
++.+..+|
T Consensus 242 gSVV~kdV 249 (294)
T PLN02694 242 GSVVLIDV 249 (294)
T ss_pred CCEECCcC
Confidence 88887664
No 178
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=98.24 E-value=2.2e-06 Score=77.58 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.4
Q ss_pred ceEcCCCEECCCCEE
Q 017030 338 SVVGIRSRINANVHL 352 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i 352 (378)
+.||++|.|++|++|
T Consensus 166 ~~IG~~v~I~~GavI 180 (338)
T COG1044 166 VVIGNNVIIHSGAVI 180 (338)
T ss_pred cEECCceEECCCCEE
Confidence 444444444444443
No 179
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.23 E-value=1.7e-06 Score=85.37 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=45.3
Q ss_pred CCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 307 RNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 307 ~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
.|++++.|.++.+.+|+||++|.|| ++.+. +++|+++++||.++.+++|+|+++++|+..+.+..++|
T Consensus 308 ~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~I 377 (482)
T PRK14352 308 TVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADI 377 (482)
T ss_pred EECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEE
Confidence 3344444433445677777777777 67664 77777777777777777777777777776665555443
No 180
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.23 E-value=3e-06 Score=75.85 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=21.4
Q ss_pred eeEEecCcEEc-ceEEe-------------eceEcCCCEECCCCEEee
Q 017030 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKV 354 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-------------~SiI~~~~~Ig~~~~i~~ 354 (378)
++.||++|.|+ ++.|- +.+||++++|++++.|..
T Consensus 47 ~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~ 94 (255)
T PRK12461 47 PTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHR 94 (255)
T ss_pred CCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEec
Confidence 45566666665 55553 456777777777777763
No 181
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.21 E-value=3.4e-06 Score=75.89 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=6.6
Q ss_pred eEEecCcEEc-ceEE
Q 017030 322 SIISHGSFIT-SSFI 335 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i 335 (378)
+.||++|.|+ ++.|
T Consensus 77 v~IG~~~~I~~~~~I 91 (254)
T TIGR01852 77 LIIGDNNTIREFVTI 91 (254)
T ss_pred EEECCCCEECCCCEE
Confidence 4445555544 4444
No 182
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.21 E-value=4.5e-06 Score=63.58 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=41.4
Q ss_pred eeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
.++||++|.|+ ++.|. ++.||++|+||. +|.+|+|++++++.++|.+-.|+|
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siI 82 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYL 82 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEE
Confidence 46788888887 66665 488888888865 678999999999999988866655
No 183
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.21 E-value=3.6e-06 Score=74.58 Aligned_cols=53 Identities=9% Similarity=-0.108 Sum_probs=39.7
Q ss_pred eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~~ 373 (378)
++.||+||.|. ++.| .+++|+++|.||.+|.|. +++|++++.|+.+|.+.+++
T Consensus 147 ~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~ 210 (269)
T TIGR00965 147 CAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210 (269)
T ss_pred CCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCC
Confidence 46666666666 5544 457899999999998886 58888888888888886654
No 184
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.20 E-value=4.7e-06 Score=67.69 Aligned_cols=66 Identities=9% Similarity=-0.073 Sum_probs=42.9
Q ss_pred CCCCCcee-eCcee-eeeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeeee
Q 017030 307 RNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 307 ~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~~ 372 (378)
.|++++.| .++.+ .++.||++|.|+ ++.+- +++|++++.||.++.| .++.|++++.|+.++.+..+
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 33444444 23444 356677777776 56553 4678888888888888 45778888888877777643
No 185
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.18 E-value=3.1e-06 Score=75.01 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=36.2
Q ss_pred ccCCCCcEEccCCCCCCcee-eCcee---------eeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCe
Q 017030 295 FYDATKPIYTSRRNLPPSKI-DDSKI---------VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCR 362 (378)
Q Consensus 295 ~~~~~~~i~~~~~i~~~~~i-~~~~i---------~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~ 362 (378)
.+++.+.|...+.|+++|.| .++.+ .+++||+||.|| + |.|.++++||+++.|.. ++|+++++
T Consensus 137 ~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~-----a~I~~GV~IG~gavIGaGavI~~~~~ 211 (269)
T TIGR00965 137 MVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGAR-----SEIVEGVIVEEGSVISMGVFIGQSTK 211 (269)
T ss_pred EECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCC-----CEEcCCCEECCCCEEeCCCEECCCCE
Confidence 33344445555555666655 33333 457788888887 5 34445555555554443 45555555
Q ss_pred Eeee
Q 017030 363 RIWK 366 (378)
Q Consensus 363 ~~~~ 366 (378)
|.+.
T Consensus 212 I~~~ 215 (269)
T TIGR00965 212 IYDR 215 (269)
T ss_pred Eecc
Confidence 5543
No 186
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.18 E-value=4.4e-06 Score=72.17 Aligned_cols=102 Identities=16% Similarity=0.036 Sum_probs=54.2
Q ss_pred eEEecCCHHHHHHHHHhcccCC-CCccccCCCCcEEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEe-eceEcCC
Q 017030 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIR 343 (378)
Q Consensus 269 ~~~~i~t~~~~~~a~~~~l~~~-~~~~~~~~~~~i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~-~SiI~~~ 343 (378)
++..++.+....+....+.+.. ....++.+.+.+.+++.+++++.| .++.|. ++.||++|.|+ ++.|. ++.|+++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 3444444444444444433221 112233444445555555566655 455553 36666666665 55554 4666666
Q ss_pred CEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 344 SRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 344 ~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
++|+.++.|. ++.+++++.|+.+|.+.
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~ 169 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATII 169 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEe
Confidence 6666666666 46666666666665554
No 187
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=98.18 E-value=4.2e-06 Score=75.47 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred eEEecCcEEc-ceEEee--------ceEcCCCEECCCCEEe-eeeeCCCCe
Q 017030 322 SIISHGSFIT-SSFIEH--------SVVGIRSRINANVHLK-VSPANPLCR 362 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~--------SiI~~~~~Ig~~~~i~-~sIi~~~~~ 362 (378)
+.||++|.|+ ++.|.+ ++||+++.|+.++.|. +|+|++++.
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~ 131 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVI 131 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeE
Confidence 4555555555 455543 2455555555555544 344444433
No 188
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.17 E-value=4.2e-06 Score=82.12 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=47.7
Q ss_pred cCCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
++.|+.++.|.++.+.+|+||++|.|+ ++.|. +|+||++|+|++++.|.+++|++++++..
T Consensus 300 ~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~ 362 (458)
T PRK14354 300 DSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSH 362 (458)
T ss_pred ccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecc
Confidence 456667777766677788888898888 78887 78889999888888888888887765433
No 189
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.17 E-value=3.2e-05 Score=73.94 Aligned_cols=263 Identities=19% Similarity=0.248 Sum_probs=136.8
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeehhhhhh----cCCc-EEEEEee-cChhhHHHHHHhhccC
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQ-YNSASLNRHLARAYNY 79 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~----~gi~-~I~iv~~-~~~~~i~~~l~~~~~~ 79 (378)
..++.+|+||||.||||+ ...||.|+||.....+++..++++.. .|.. -.+|.++ ...+...+++++.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 467888999999999998 78899999996643788887776654 3443 4566665 4456788899874433
Q ss_pred CCCcc-cCCceEEEeccccC-C-CcCC------Ccc-ccCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEecCHHH
Q 017030 80 GSGVT-FGDGCVEVLAATQT-P-GEAG------KRW-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (378)
Q Consensus 80 ~~~~~-~~~~~i~i~~~~~~-~-~~~~------~~~-~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~~d~~~ 147 (378)
..... |....+-.+..... . ...+ ..| |.|.|+...... ..+++....+.+.+.+.+.|.+...---.
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 22211 11111111111000 0 0000 011 346666443332 12322222346899999999955433346
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCC--EEEEEecCCccchhcccccchhccccccccccCcceeeeeE
Q 017030 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 225 (378)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 225 (378)
++.++.++++++.+-+.+...+ ...-|.+.. .+|+ ++++.+-|..... .+.. .......++|.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~-~~G~~~vvEysqip~~~~~-~~~~------------~~~~~~FntnN 275 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSP-DEKGGVLCR-YDGKLQVVEYSQIPKEHMA-EFKD------------IKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CST-TTSSEEEEE-ETTEEEEEEGGGS-HHGHH-HHTS------------TTTSBEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCC-CCceeEEEE-eCCccEEEEeccCCHHHHH-hhhc------------cccceEEEece
Confidence 7888889999998888776432 233455543 2454 4455444433110 0000 01224568888
Q ss_pred EEEeHHHHHHHHhhhCCCCC------c-----hhccccc------ccccc-cceEEEEe-cceEEecCCHHHHHHHHHhc
Q 017030 226 YLFKKEILLNLLRWRFPTAN------D-----FGSEIIP------ASANE-QFLKAYLF-NDYWEDIGTIRSFFEANLAL 286 (378)
Q Consensus 226 y~~~~~~l~~~l~~~~~~~~------~-----~~~~~l~------~l~~~-~~i~~~~~-~~~~~~i~t~~~~~~a~~~~ 286 (378)
-+|+-+.++++++....... . -...+++ ..+.. .+..++.. ...|..+.+..|++....++
T Consensus 276 i~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~ 355 (420)
T PF01704_consen 276 IWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDL 355 (420)
T ss_dssp EEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTT
T ss_pred eeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccCcceeeccce
Confidence 89999999888765321110 0 0000111 01111 12233333 35688999999998887654
No 190
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.16 E-value=3.1e-06 Score=82.81 Aligned_cols=63 Identities=19% Similarity=0.106 Sum_probs=43.4
Q ss_pred CCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeee
Q 017030 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCS 368 (378)
Q Consensus 306 ~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~ 368 (378)
+.|+.++.|..+.+.+|+||++|.|+ ++.|. +++|+++|+||+++.|.+++|+++++|..++.
T Consensus 298 ~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 362 (450)
T PRK14360 298 SQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSY 362 (450)
T ss_pred EEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEecccee
Confidence 34455555545556677888888888 77776 68888888888888887777777665544433
No 191
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.16 E-value=8.1e-06 Score=74.55 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=120.0
Q ss_pred eEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhhcC--------C-cEEEEEee-cChhhHHHHHHhh
Q 017030 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG--------I-NKVYILTQ-YNSASLNRHLARA 76 (378)
Q Consensus 10 ~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~~g--------i-~~I~iv~~-~~~~~i~~~l~~~ 76 (378)
.+|+||||.||||+ .+.||.++|| .|+ ++++..++++.+.. . -..+|.++ ...++..++++++
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 8899999999 578 89999998876521 1 24466665 4456688888754
Q ss_pred ccCCCCc-c---cCCceEEEeccccC------CCcCC-CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcCCeEEec
Q 017030 77 YNYGSGV-T---FGDGCVEVLAATQT------PGEAG-KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRM 143 (378)
Q Consensus 77 ~~~~~~~-~---~~~~~i~i~~~~~~------~~~~~-~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~~~~~ 143 (378)
..++-.. + |....+-.+...+. ..+.. ...|.|.|+....... .+++....+.+.+.+..-|.....
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3232110 0 11111111110000 00000 1235577666544322 222222334688888888884443
Q ss_pred C-HHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE--CCCCC--E--EEEEecCCccchhcccccchhcccccccccc
Q 017030 144 D-YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR--V--LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEE 216 (378)
Q Consensus 144 d-~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (378)
. .-.++-.+..+++++...+.+..+ .+.-|.+.. ..+|+ | +++.|-+..-..... .+.. .......
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~-~~g~----~~~~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGK-DDGD----VDDKTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCC-CCCC----ccccccc
Confidence 3 345566677788888877665432 456776643 23343 3 666665532110000 0000 0000001
Q ss_pred CcceeeeeEEEEeHHHHHHHHhh
Q 017030 217 KPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 217 ~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
+....|++.++|+-+.+.+.+++
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 22467899999999988877764
No 192
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.14 E-value=5.6e-06 Score=64.03 Aligned_cols=36 Identities=17% Similarity=-0.096 Sum_probs=20.5
Q ss_pred eeceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeee
Q 017030 336 EHSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 336 ~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~ 371 (378)
..++|+++|.|++++.| .+++|++++.++.+|.+..
T Consensus 57 ~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~ 93 (109)
T cd04647 57 APIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK 93 (109)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee
Confidence 34455666666666655 4556666666665555553
No 193
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.13 E-value=3.8e-06 Score=82.14 Aligned_cols=69 Identities=16% Similarity=0.002 Sum_probs=55.6
Q ss_pred CCCCCCceeeCceeeeeEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeE
Q 017030 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 306 ~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~ 374 (378)
+.|++++.|..+.+.+|+|+++|.|+ ++.|. +++|+++|+||+++++.+++|++++++...+.+..++|
T Consensus 291 s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~I 361 (448)
T PRK14357 291 CEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATV 361 (448)
T ss_pred cEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEE
Confidence 45556666655667799999999999 78884 59999999999999999999999998888666655444
No 194
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.13 E-value=7.7e-06 Score=66.39 Aligned_cols=48 Identities=8% Similarity=0.103 Sum_probs=26.5
Q ss_pred eEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee---------eeeCCCCeEeeeeee
Q 017030 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV---------SPANPLCRRIWKCSS 369 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~ 369 (378)
+.||+||.|+ ++.| .++.|+++|.|+.++.|.+ ++|++++.|+.++.+
T Consensus 32 ~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I 90 (139)
T cd03350 32 AYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEV 90 (139)
T ss_pred CEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEE
Confidence 3455555555 4444 3466666666666666642 455555555555554
No 195
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.13 E-value=6.7e-06 Score=70.50 Aligned_cols=50 Identities=12% Similarity=-0.058 Sum_probs=23.7
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
++.|+++|.|| ++.| .+++|..+++||++|.|. +|.+.++++|+++|.+.
T Consensus 126 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~ 178 (197)
T cd03360 126 GAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIG 178 (197)
T ss_pred CCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEEC
Confidence 34444444444 3333 344444555555555553 35555555555555543
No 196
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.12 E-value=6.8e-06 Score=71.44 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=29.7
Q ss_pred cCCCCcEEccCCCCCCcee-eCcee-eeeEEecCcEEc-ceEEee-ceEcCCCEECCCCEE
Q 017030 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEH-SVVGIRSRINANVHL 352 (378)
Q Consensus 296 ~~~~~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i 352 (378)
+.+.+.+.+++.|+++++| .++.| .++.||++|.|+ ++.|.+ ++|++++.|++++.|
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3344444444555555555 33444 355555555555 455544 566666666666655
No 197
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.11 E-value=6.4e-06 Score=77.42 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.8
Q ss_pred Cceee-eeEEecCcEEc-ceEEe--------------------eceEcCCCEECCCCEEe-----eeeeCCCCeEeeeee
Q 017030 316 DSKIV-DSIISHGSFIT-SSFIE--------------------HSVVGIRSRINANVHLK-----VSPANPLCRRIWKCS 368 (378)
Q Consensus 316 ~~~i~-~s~Ig~~~~I~-~~~i~--------------------~SiI~~~~~Ig~~~~i~-----~sIi~~~~~~~~~~~ 368 (378)
++.|. ++.||++|.|+ ++.|. +++|+++|.||.++.|. +++|+++++|++.|+
T Consensus 160 ~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~ 239 (343)
T PRK00892 160 NVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQ 239 (343)
T ss_pred CeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeE
Confidence 44443 34477777777 66663 57888888888888884 466666666666555
Q ss_pred e
Q 017030 369 S 369 (378)
Q Consensus 369 ~ 369 (378)
|
T Consensus 240 I 240 (343)
T PRK00892 240 I 240 (343)
T ss_pred E
Confidence 5
No 198
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.09 E-value=3.1e-06 Score=75.70 Aligned_cols=75 Identities=27% Similarity=0.210 Sum_probs=45.0
Q ss_pred ccccCCCCcEEccCCCCCCceeeCceeee--------------eEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeee
Q 017030 293 FSFYDATKPIYTSRRNLPPSKIDDSKIVD--------------SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPA 357 (378)
Q Consensus 293 ~~~~~~~~~i~~~~~i~~~~~i~~~~i~~--------------s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi 357 (378)
+.+++.+.+.++..+..+|+.+.++++.+ |+||++|+|+ |+.+.+|.|+.+++++..+.|..||+
T Consensus 240 ~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~iv 319 (371)
T KOG1322|consen 240 FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIV 319 (371)
T ss_pred HHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhc
Confidence 56777888888888888887774444443 5555555555 45555555555555555555555555
Q ss_pred CCCCeEeeee
Q 017030 358 NPLCRRIWKC 367 (378)
Q Consensus 358 ~~~~~~~~~~ 367 (378)
+-+++||.++
T Consensus 320 g~~~~IG~~~ 329 (371)
T KOG1322|consen 320 GWNVPIGIWA 329 (371)
T ss_pred cccccccCce
Confidence 5555554444
No 199
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.08 E-value=9e-06 Score=58.52 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=31.9
Q ss_pred eEEecCcEEc-ceEEee-ceEcCCCEECCCCEEee---------eeeCCCCeEeeeeeee
Q 017030 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKV---------SPANPLCRRIWKCSSL 370 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~---------sIi~~~~~~~~~~~~~ 370 (378)
|.||++|.|+ ++.|.. ++||++++|++++.|.+ ..|++++.++.+|.+.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 3566666666 566654 77777777777777775 4555565555555554
No 200
>PLN02357 serine acetyltransferase
Probab=98.08 E-value=6e-06 Score=76.09 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=51.7
Q ss_pred cEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 301 PIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 301 ~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
.|++.+.|+++++|. ++.|. +++||+||.|. ++.| .+++||++|.||.|+.| .+..||++++|+.
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECC
Confidence 456666667666663 23443 45666666665 4444 24789999999999888 4688999999999
Q ss_pred eeeeeeee
Q 017030 366 KCSSLCSV 373 (378)
Q Consensus 366 ~~~~~~~~ 373 (378)
++++..+|
T Consensus 308 gSVV~~dV 315 (360)
T PLN02357 308 GSVVLKDV 315 (360)
T ss_pred CCEECccc
Confidence 98887765
No 201
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=1.5e-05 Score=67.56 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=77.8
Q ss_pred eeEEEEcCCC-CcccccccccCcccceeecCeeeeeeeehhhhhhcC-CcEEEEEeecChh--hHHHHHHhhccCCCCcc
Q 017030 9 VAAVILGGGA-GTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSA--SLNRHLARAYNYGSGVT 84 (378)
Q Consensus 9 ~~avIla~G~-g~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~--~i~~~l~~~~~~~~~~~ 84 (378)
|.++|+.|-. +||| .-|.|+|+++. |||+++|+++.++. +++++|.++-+.+ .+.++.... |
T Consensus 3 ~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G-- 68 (241)
T COG1861 3 MILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G-- 68 (241)
T ss_pred cEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C--
Confidence 4555666655 4888 47999999999 99999999999874 6889999865543 366665432 1
Q ss_pred cCCceEEEeccccCCCcCCCccccCcH-HHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHHHcCCc
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTA-DAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~~~~~~ 158 (378)
+.+. .|+. +.|......++.. ..+.++=+.||. +.+.+ ++.+++.|.+++++
T Consensus 69 -----~~vf--------------rGs~~dVL~Rf~~a~~a~---~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 -----FYVF--------------RGSEEDVLQRFIIAIKAY---SADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred -----eeEe--------------cCCHHHHHHHHHHHHHhc---CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 1111 2444 3444444444332 246888899999 66666 58889999998876
No 202
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.04 E-value=2.4e-05 Score=65.73 Aligned_cols=65 Identities=12% Similarity=-0.129 Sum_probs=31.6
Q ss_pred cCCCCCCcee-eCceee---eeEEecCcEEc-ceEEee-------------ceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEH-------------SVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~-------------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
+..|+++++| .++.+. +..||++|.|+ ++.|.. ..++..++||++|.| .+++|+++++|++
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 3445555655 334332 34667777776 665531 122233444444444 2344455555555
Q ss_pred eeee
Q 017030 366 KCSS 369 (378)
Q Consensus 366 ~~~~ 369 (378)
+|.+
T Consensus 142 ~~~V 145 (169)
T cd03357 142 NSVI 145 (169)
T ss_pred CCEE
Confidence 5555
No 203
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=9.9e-06 Score=71.43 Aligned_cols=71 Identities=14% Similarity=-0.028 Sum_probs=52.0
Q ss_pred EEccCCCCCCcee-eCceee-eeEEecCcEEc-ceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeee
Q 017030 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
|..++-|.|++.+ ..++|. |..||+|++|| |+.+.+|||.++|+|.+|+.+-+|||+=+++||.=.-++++
T Consensus 285 IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred EEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 3333334444444 344553 88889999999 89999999999999999999999999988888855554443
No 204
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.02 E-value=1.4e-05 Score=71.43 Aligned_cols=65 Identities=8% Similarity=-0.161 Sum_probs=43.5
Q ss_pred CCCCcee-eCceee-eeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeeee
Q 017030 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 308 i~~~~~i-~~~~i~-~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~~ 372 (378)
|++++.| .++.|. +++||+||.|+ ++.|. +++|+++|.||.++.| .+++|++++.|+.+|.+..+
T Consensus 135 Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 135 VDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred ECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 3444444 234443 35667777776 55443 4788999999988888 56888888888888877653
No 205
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.01 E-value=1.3e-05 Score=71.74 Aligned_cols=75 Identities=15% Similarity=-0.007 Sum_probs=51.1
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|++.+.|++++.|+ +..|. ++.||+||.|. ++.+- +++||++|.||.||.|.+ +.|+++++|
T Consensus 141 gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~I 220 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKI 220 (273)
T ss_pred eeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEE
Confidence 34566677777777773 33442 46666666666 55443 468888999998888866 778888888
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+.++.+..+|
T Consensus 221 GAgSvV~~dV 230 (273)
T PRK11132 221 GAGSVVLQPV 230 (273)
T ss_pred CCCCEECccc
Confidence 8777766543
No 206
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.00 E-value=2e-05 Score=64.97 Aligned_cols=74 Identities=9% Similarity=-0.009 Sum_probs=42.4
Q ss_pred cccCCCCcEEccCCCCCCcee-eCceee--------------------------eeEEecCcEEc-ceEEeeceEcCCCE
Q 017030 294 SFYDATKPIYTSRRNLPPSKI-DDSKIV--------------------------DSIISHGSFIT-SSFIEHSVVGIRSR 345 (378)
Q Consensus 294 ~~~~~~~~i~~~~~i~~~~~i-~~~~i~--------------------------~s~Ig~~~~I~-~~~i~~SiI~~~~~ 345 (378)
.++++++.+..++.|+.++.| .++.++ .+.||++|+|| ++.|-.|.|+++|-
T Consensus 18 a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~l 97 (176)
T COG0663 18 AFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVL 97 (176)
T ss_pred eEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcE
Confidence 477788888888888877777 333222 24456666666 55555566666666
Q ss_pred ECCCCEEee-eeeCCCCeEeeee
Q 017030 346 INANVHLKV-SPANPLCRRIWKC 367 (378)
Q Consensus 346 Ig~~~~i~~-sIi~~~~~~~~~~ 367 (378)
||=|+.|-| +.|++++.|+-+.
T Consensus 98 IGmgA~vldga~IG~~~iVgAga 120 (176)
T COG0663 98 IGMGATVLDGAVIGDGSIVGAGA 120 (176)
T ss_pred EecCceEeCCcEECCCcEEccCC
Confidence 655554444 4444444444333
No 207
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.99 E-value=1.5e-05 Score=60.82 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=36.0
Q ss_pred eeEEecCcEEc-ceE---EeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeee
Q 017030 321 DSIISHGSFIT-SSF---IEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~---i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~ 372 (378)
++.|++++.|+ ++. +..++|++++.|+.++.+.. +.|++++.++.+|.+..+
T Consensus 34 ~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~ 90 (101)
T cd03354 34 NCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTKD 90 (101)
T ss_pred CCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECcc
Confidence 34445555555 332 56677888888888888877 777888877777776544
No 208
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=97.98 E-value=1.3e-05 Score=71.84 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=28.3
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee-eeeCCC
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV-SPANPL 360 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~-sIi~~~ 360 (378)
+++||++|.|| ++.| .+++||++++||.++.|.. +.|++.
T Consensus 176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~ 218 (272)
T PRK11830 176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDR 218 (272)
T ss_pred CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcC
Confidence 58899999999 7665 6677777777777766653 555543
No 209
>PLN02739 serine acetyltransferase
Probab=97.98 E-value=1.4e-05 Score=73.09 Aligned_cols=75 Identities=16% Similarity=0.011 Sum_probs=56.9
Q ss_pred CCcEEccCCCCCCceee---Cceee-eeEEecCcEEc-ceEEe---------eceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i~-~s~Ig~~~~I~-~~~i~---------~SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|++.+.|++++.|+ ++.|. +++||+||.|. ++.|- +..||++|.||.|+.|-+ +.||++++|
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI 284 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV 284 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence 34567778888888884 45553 67777777777 66663 478999999999999865 888999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+-|+.+..+|
T Consensus 285 GAGSVV~kDV 294 (355)
T PLN02739 285 AAGSLVLKDV 294 (355)
T ss_pred CCCCEECCCC
Confidence 8888876654
No 210
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.94 E-value=2.2e-05 Score=60.68 Aligned_cols=51 Identities=14% Similarity=-0.051 Sum_probs=34.6
Q ss_pred eeEEecCcEEc-ceEEee--------------ceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH--------------SVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~--------------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~ 371 (378)
++.||++|.|+ ++.|.+ +.+..+++||++|.| .++++.+++.++++|.+..
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~ 87 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGA 87 (109)
T ss_pred ceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCCEECC
Confidence 35566666665 555543 355677788888888 6677788888888887743
No 211
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=97.94 E-value=2.2e-05 Score=70.28 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=7.6
Q ss_pred eEEecCcEEc-ceEE
Q 017030 322 SIISHGSFIT-SSFI 335 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i 335 (378)
..||++|.|+ ++.|
T Consensus 78 v~IG~~~~I~e~vtI 92 (255)
T PRK12461 78 LEIGDRNVIREGVTI 92 (255)
T ss_pred eEECCceEECCccEE
Confidence 4455556555 4544
No 212
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=97.94 E-value=4.7e-05 Score=61.05 Aligned_cols=71 Identities=14% Similarity=0.012 Sum_probs=44.2
Q ss_pred CCcEEccCCCCCCceeeCceee------eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEeeeeeCCCCe
Q 017030 299 TKPIYTSRRNLPPSKIDDSKIV------DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKVSPANPLCR 362 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~~~~i~------~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~sIi~~~~~ 362 (378)
...+...+.+..+++|.+-.+. ++.||++|.|+ ++.|.- ..||++|.||.|+.| +..|+++++
T Consensus 19 GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG~ga~I-gv~IG~~~v 97 (147)
T cd04649 19 GTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLGANSGI-GISLGDNCI 97 (147)
T ss_pred CcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEECCCCEE-eEEECCCCE
Confidence 3334444444444444333333 37788888887 666542 467777888888887 677777777
Q ss_pred Eeeeeeee
Q 017030 363 RIWKCSSL 370 (378)
Q Consensus 363 ~~~~~~~~ 370 (378)
|+.++.+.
T Consensus 98 IGaGsvV~ 105 (147)
T cd04649 98 VEAGLYVT 105 (147)
T ss_pred ECCCCEEe
Confidence 77776543
No 213
>PRK10191 putative acyl transferase; Provisional
Probab=97.92 E-value=2.5e-05 Score=63.54 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=38.3
Q ss_pred eeEEecCcEEc-ceEEe--------eceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeeeE
Q 017030 321 DSIISHGSFIT-SSFIE--------HSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~--------~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~~ 374 (378)
++.||+||.|+ ++.|- .+.||++|.||.++.|.+ +.|++++.|+.++.+..+|.
T Consensus 67 ~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~ 130 (146)
T PRK10191 67 NVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVP 130 (146)
T ss_pred CcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCccC
Confidence 34455555555 44442 258899999999988875 88888888888888877653
No 214
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=97.87 E-value=9.3e-05 Score=63.69 Aligned_cols=67 Identities=10% Similarity=-0.065 Sum_probs=37.6
Q ss_pred ccCCCCCCcee-eCceee---eeEEecCcEEc-ceEEee-------------------ceEcCCCEECCCCEEe-eeeeC
Q 017030 304 TSRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEH-------------------SVVGIRSRINANVHLK-VSPAN 358 (378)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~-------------------SiI~~~~~Ig~~~~i~-~sIi~ 358 (378)
.+..|+.+++| .++.+. +..||++|.|+ ++.|.. .+||++|.||.++.|. ++.|+
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG 153 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIG 153 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEEC
Confidence 35666777776 455553 35677777777 666641 3566666666665554 24444
Q ss_pred CCCeEeeeeeee
Q 017030 359 PLCRRIWKCSSL 370 (378)
Q Consensus 359 ~~~~~~~~~~~~ 370 (378)
+++.|+.++.+.
T Consensus 154 ~~~vIgagsvV~ 165 (203)
T PRK09527 154 DNSVIGAGSVVT 165 (203)
T ss_pred CCCEECCCCEEc
Confidence 444444444433
No 215
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.84 E-value=5.2e-05 Score=58.51 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=32.9
Q ss_pred eEEecCcEEc-ceEEe----------------eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 322 SIISHGSFIT-SSFIE----------------HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~----------------~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
..||++|.|+ ++.|. ...|+++|.||.++.|. ++.|++++.|+.+|.+..+
T Consensus 24 i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~ 92 (107)
T cd05825 24 VTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD 92 (107)
T ss_pred eEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc
Confidence 5666666666 55542 35677777777777775 4666666666666666544
No 216
>PRK10502 putative acyl transferase; Provisional
Probab=97.81 E-value=5.3e-05 Score=64.40 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=35.8
Q ss_pred CCCCCCcee-eCceee---eeEEecCcEEc-ceEEe----------------eceEcCCCEECCCCEEe-eeeeCCCCeE
Q 017030 306 RRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIE----------------HSVVGIRSRINANVHLK-VSPANPLCRR 363 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~----------------~SiI~~~~~Ig~~~~i~-~sIi~~~~~~ 363 (378)
..|++++.| +++.+. +..||++|.|+ ++.|. ..+||++|.||.++.|. ++.|++++.|
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 445566666 455553 46777777777 66552 23667777777665552 3444444444
Q ss_pred eeeee
Q 017030 364 IWKCS 368 (378)
Q Consensus 364 ~~~~~ 368 (378)
+.++.
T Consensus 152 ga~sv 156 (182)
T PRK10502 152 GARSS 156 (182)
T ss_pred CCCCE
Confidence 44444
No 217
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.76 E-value=0.00013 Score=61.97 Aligned_cols=65 Identities=15% Similarity=0.007 Sum_probs=30.5
Q ss_pred cCCCCCCcee-eCceeeee---EEecCcEEc-ceEEee-------------ceEcCCCEECCCCEE-eeeeeCCCCeEee
Q 017030 305 SRRNLPPSKI-DDSKIVDS---IISHGSFIT-SSFIEH-------------SVVGIRSRINANVHL-KVSPANPLCRRIW 365 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~s---~Ig~~~~I~-~~~i~~-------------SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~ 365 (378)
+..|+++++| .++.+.+. .||++|.|+ ++.+.. ..++..++||++|.| .+++|.++++|++
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 152 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 152 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECC
Confidence 3444445444 23443322 567777776 665531 122233444444444 3344455555555
Q ss_pred eeee
Q 017030 366 KCSS 369 (378)
Q Consensus 366 ~~~~ 369 (378)
+|++
T Consensus 153 ~~vI 156 (183)
T PRK10092 153 NVVV 156 (183)
T ss_pred CCEE
Confidence 5554
No 218
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.74 E-value=8.2e-05 Score=63.84 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=22.9
Q ss_pred ceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeeeee
Q 017030 338 SVVGIRSRINANVHLK-VSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~~ 372 (378)
++|+++|.||.++.|. ++.|++++.|+.++.+..+
T Consensus 131 v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~ 166 (192)
T PRK09677 131 VVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS 166 (192)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc
Confidence 4567777777777665 4666666666666666544
No 219
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.71 E-value=0.00031 Score=70.07 Aligned_cols=222 Identities=17% Similarity=0.171 Sum_probs=121.2
Q ss_pred cceeEEEEcCCCCcccccccccCcccceee---cCeeeeeeeehhhhhhc-----------CC-cEEEEEee-cChhhHH
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS-----------GI-NKVYILTQ-YNSASLN 70 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi---~g~~pli~~~l~~l~~~-----------gi-~~I~iv~~-~~~~~i~ 70 (378)
.++.+|+||||.||||+ ...||.++|+ .|+ ++++..++.+.+. +. --.+|-++ ...+...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 56788999999999998 7889999998 378 8999999887553 11 13466665 4456688
Q ss_pred HHHHhhccCCCCc---c-cCCceEEEeccc-cC---CC--cCC-CccccCcHHHHHHHHH--HhcCCCCCCCCeEEEEcC
Q 017030 71 RHLARAYNYGSGV---T-FGDGCVEVLAAT-QT---PG--EAG-KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (378)
Q Consensus 71 ~~l~~~~~~~~~~---~-~~~~~i~i~~~~-~~---~~--~~~-~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~g 137 (378)
+++.++..++-.. . |....+-.+... .. .. ... ...+.|.|+....... .+++....+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 8887643232211 0 000000011000 00 00 000 1134566655443322 233333344689999999
Q ss_pred CeEEec-CHHHHHHHHHHcCCcEEEEEeecCCCCCCcceEEEE--CCCCC----EEEEEecCCccchhcccccchhcccc
Q 017030 138 DHLYRM-DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR----VLSFSEKPKGKDLKAMAVDTTVLGLS 210 (378)
Q Consensus 138 D~~~~~-d~~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~----v~~~~ek~~~~~~~~~~~~~~~~~~~ 210 (378)
|..... -.-.++.++..++.++.+.+.+... ...-|.+.. ..+|+ ++++.|.+..-....- .+..+-
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a~~-p~g~l~--- 356 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRATGH-PDGDVN--- 356 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHhccC-CCcccc---
Confidence 993322 2367788888899998888776632 345665543 22343 3455555432110000 000000
Q ss_pred ccccccCcceeeeeEEEEeHHHHHHHHhh
Q 017030 211 KQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (378)
Q Consensus 211 ~~~~~~~~~~~~~Giy~~~~~~l~~~l~~ 239 (378)
.....+..-.|+..-+++-..+.+.+++
T Consensus 357 -~~~~~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 -DETGYSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred -cccccccCCCCceeeEeeHHHHHHHHHh
Confidence 0000112224788888998888777764
No 220
>PRK10502 putative acyl transferase; Provisional
Probab=97.71 E-value=9.6e-05 Score=62.85 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=21.9
Q ss_pred eeEEecCcEEc-ceEEe---eceEcCCCEECCCCEE
Q 017030 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHL 352 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~---~SiI~~~~~Ig~~~~i 352 (378)
+..||++|.|+ ++.|. +..||++|.|++++.|
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I 106 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYL 106 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEE
Confidence 46667777776 66554 4677887777777766
No 221
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=97.60 E-value=0.00013 Score=55.57 Aligned_cols=70 Identities=14% Similarity=-0.075 Sum_probs=34.2
Q ss_pred EEccCCCCCCceeeC---ceee-eeEEecCcEEc-ceEEeece---EcCCCEECCCCEEe-eeeeCCCCeEeeeeeeee
Q 017030 302 IYTSRRNLPPSKIDD---SKIV-DSIISHGSFIT-SSFIEHSV---VGIRSRINANVHLK-VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 302 i~~~~~i~~~~~i~~---~~i~-~s~Ig~~~~I~-~~~i~~Si---I~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~~ 371 (378)
+.+++.+++++++.. +.+. ++.||++|.|+ ++.|.+.. +..+++||+++.|. ++.+.++++|+++|.+.-
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~ 83 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGA 83 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECC
Confidence 445555666666621 2222 24444444444 33332222 13333466666665 356666666666666643
No 222
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=97.59 E-value=0.00025 Score=56.92 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=41.2
Q ss_pred CcEEccCCCCCCcee-eCcee-eeeEEecCcEEcceEE-eeceEcCCCEECCCCEEeeeeeCCC----CeEeeeeeee
Q 017030 300 KPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFITSSFI-EHSVVGIRSRINANVHLKVSPANPL----CRRIWKCSSL 370 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i-~~~~i-~~s~Ig~~~~I~~~~i-~~SiI~~~~~Ig~~~~i~~sIi~~~----~~~~~~~~~~ 370 (378)
..+...+.|++++.| .++.+ -|+.||++|.|.+ .+ .+++|+.+|.||+++.|. +.+..+ ++|+++|.|.
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence 334444455555555 23333 2444555555431 22 358999999999999998 555666 6666666665
No 223
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00017 Score=60.34 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=54.3
Q ss_pred CCcEEccCCCCCCceee---Ccee-eeeEEecCcEEc-ceEE---------eeceEcCCCEECCCCEEee-eeeCCCCeE
Q 017030 299 TKPIYTSRRNLPPSKID---DSKI-VDSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLKV-SPANPLCRR 363 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i~---~~~i-~~s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~ 363 (378)
...|++.++|+++..|+ +..| +.++||+||.|- ++++ .+=.||+||.||.||+|-+ =-||+|++|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEE
Confidence 45678888888888884 2333 345556655554 3333 3448999999999999877 558999999
Q ss_pred eeeeeeeeee
Q 017030 364 IWKCSSLCSV 373 (378)
Q Consensus 364 ~~~~~~~~~~ 373 (378)
+-+++...+|
T Consensus 147 GA~sVVlkdV 156 (194)
T COG1045 147 GAGSVVLKDV 156 (194)
T ss_pred CCCceEccCC
Confidence 9999888765
No 224
>PLN02694 serine O-acetyltransferase
Probab=97.53 E-value=0.00018 Score=64.63 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=24.0
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
+++||+||.|| ++.| -++.||++|+||.|+.|...
T Consensus 212 ~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kd 248 (294)
T PLN02694 212 HPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLID 248 (294)
T ss_pred ccEECCCeEECCeeEECCCCEECCCCEECCCCEECCc
Confidence 46777777777 6655 56777777777777777654
No 225
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.51 E-value=8.4e-05 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=16.3
Q ss_pred eEEecCcEEc-ceE-EeeceEcCCCEECCCCEEe
Q 017030 322 SIISHGSFIT-SSF-IEHSVVGIRSRINANVHLK 353 (378)
Q Consensus 322 s~Ig~~~~I~-~~~-i~~SiI~~~~~Ig~~~~i~ 353 (378)
+.||++|.|+ ++. ..++.|+++|.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4566666665 433 2345555555555555543
No 226
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.48 E-value=0.00023 Score=60.36 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred CcccceeecC--eeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCcc
Q 017030 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (378)
Q Consensus 29 ~pK~llpi~g--~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 106 (378)
.+|+|+++.| + |||+|+++.+. ..+.+|+|+++... .+ .. .+ +.++.+...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~---------~~---~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE---------LP---APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc---------CC---CCEeccCCC--------
Confidence 5999999999 9 99999999766 46899999987542 11 00 01 123322211
Q ss_pred ccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHHH
Q 017030 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (378)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h~ 153 (378)
..|...++..+....... ..+.+++++||+ ++..+ +..+++.+.
T Consensus 56 g~gpl~~~~~gl~~~~~~---~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 56 GLGPLPATGRGLRAAAEA---GARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred CCCcHHHHHHHHHHHHhc---CCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 136666665554433110 148999999999 55666 666666543
No 227
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.47 E-value=0.0003 Score=63.38 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=31.1
Q ss_pred eeEEecCcEEc-ceEE----e-e----ceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI----E-H----SVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i----~-~----SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
.++||++|.|| ++.| . + ..||++|.||.|+.| +..|+++++|+.+..+
T Consensus 224 GavIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I-GI~IGd~~iIGAGavV 281 (341)
T TIGR03536 224 GVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI-GIPLGDRCTVEAGLYI 281 (341)
T ss_pred CCEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE-eeEECCCCEECCCCEE
Confidence 35566666666 4433 2 1 567777888888887 7777777777776644
No 228
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.42 E-value=0.00036 Score=56.90 Aligned_cols=35 Identities=6% Similarity=-0.113 Sum_probs=18.7
Q ss_pred eceEcCCCEECCCCEE-eeeeeCCCCeEeeeeeeee
Q 017030 337 HSVVGIRSRINANVHL-KVSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~~ 371 (378)
+++||++|.||.+|.| .++.|++++.|+.++.+..
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4555555555555555 3455555555555555433
No 229
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=97.41 E-value=0.0004 Score=57.84 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=15.3
Q ss_pred EEecCcEEc-ceEEee-ceEcCCCEECCCCEEee
Q 017030 323 IISHGSFIT-SSFIEH-SVVGIRSRINANVHLKV 354 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~ 354 (378)
+||++|.|+ ++.|.. +.||++|+||.++.|..
T Consensus 115 ~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 115 TVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred EECCCcEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 555555555 433322 44555555555544443
No 230
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=97.39 E-value=0.00044 Score=58.08 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=14.3
Q ss_pred eEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee
Q 017030 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~ 354 (378)
+.||++|.|+ ++.| .++.||++|+||.++.|..
T Consensus 119 v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 4455555554 3332 2344444444444444443
No 231
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=97.37 E-value=0.00057 Score=58.86 Aligned_cols=67 Identities=15% Similarity=-0.031 Sum_probs=38.8
Q ss_pred EccCCCCCCceeeCceeeeeEEecCcEEc-ceEEe---eceEcCCCEECCCCEEee-------------------eeeCC
Q 017030 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKV-------------------SPANP 359 (378)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~s~Ig~~~~I~-~~~i~---~SiI~~~~~Ig~~~~i~~-------------------sIi~~ 359 (378)
..++.|.+|+++.- -.|..||+++.|+ ++.|. +..||++|.|+++|.|.. .+|++
T Consensus 59 g~~~~I~~~~~~~~--g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 59 GENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CCCcEEcCCEEEee--CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 33445555555520 0345566666665 55552 357888888888888752 45666
Q ss_pred CCeEeeeeeeee
Q 017030 360 LCRRIWKCSSLC 371 (378)
Q Consensus 360 ~~~~~~~~~~~~ 371 (378)
+|.|+.+|.+.+
T Consensus 137 ~v~IG~~~~I~~ 148 (203)
T PRK09527 137 NVWIGSHVVINP 148 (203)
T ss_pred CcEECCCCEEcC
Confidence 666666655543
No 232
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=97.33 E-value=0.00069 Score=60.75 Aligned_cols=49 Identities=20% Similarity=0.102 Sum_probs=33.6
Q ss_pred eeEEecCcEEc-ceEEee---------ceEcCCCEECCCCEEeeeeeCCCCeEeeeeeee
Q 017030 321 DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i~~---------SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~ 370 (378)
+++||++|.|+ ++.|-. ..||++|.||.||.| +..|+++|+|+-|..+-
T Consensus 199 dvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-GI~IGd~~VVGAGaVVt 257 (319)
T TIGR03535 199 GVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-GISLGDDCVVEAGLYVT 257 (319)
T ss_pred CCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE-CeEECCCCEECCCCEEe
Confidence 45566666666 555332 678888888888888 77777777777766543
No 233
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00086 Score=58.84 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=34.0
Q ss_pred eEEecCcEEc-ceEE---------eeceEcCCCEECCCC-EEeeeeeCCCCeEeeeeeeeeee
Q 017030 322 SIISHGSFIT-SSFI---------EHSVVGIRSRINANV-HLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i---------~~SiI~~~~~Ig~~~-~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
.+||+||.|| |+.| .-.+|++||-||.|+ .+++.++++||.|+-|..+-+|+
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 4566666666 5544 335677777777776 66667777777777776666654
No 234
>PRK10191 putative acyl transferase; Provisional
Probab=97.27 E-value=0.00067 Score=55.19 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=34.4
Q ss_pred eEEecCcEEc-ceEEe-eceEcCCCEECCCCEEeeeeeCCCCeEeeee
Q 017030 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKVSPANPLCRRIWKC 367 (378)
Q Consensus 322 s~Ig~~~~I~-~~~i~-~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~ 367 (378)
+.||++|.|+ ++.+. +..||++++||.++.|.+.+-.....++..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~~~~~v~G~pA 140 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDSVPDNALVVGEKA 140 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCccCCCcEEEccCc
Confidence 5788888888 76665 5888889999988888887665555554443
No 235
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=97.25 E-value=0.00075 Score=55.79 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=40.7
Q ss_pred cCCCCCCcee-eCceeeeeEEecCcEEc-ceEEee-ceEcCCCEECCCCEEeeeeeCCC
Q 017030 305 SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKVSPANPL 360 (378)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~-SiI~~~~~Ig~~~~i~~sIi~~~ 360 (378)
.+.|++.+.| .++.|..|.||++|.|| ++.|-| +.||++|.||.|+.+...-..|.
T Consensus 72 p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~ 130 (176)
T COG0663 72 PVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG 130 (176)
T ss_pred CeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCC
Confidence 3556667777 46777889999999999 876666 77777777777777766544443
No 236
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.25 E-value=0.00075 Score=57.92 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=45.8
Q ss_pred CCCCCCcee-eCceee---eeEEecCcEEc-ceEEeece----------------------EcCCCEECCCCEE-eeeee
Q 017030 306 RRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIEHSV----------------------VGIRSRINANVHL-KVSPA 357 (378)
Q Consensus 306 ~~i~~~~~i-~~~~i~---~s~Ig~~~~I~-~~~i~~Si----------------------I~~~~~Ig~~~~i-~~sIi 357 (378)
..++.++.| .++.+. ++.||+||.|+ ++.|.+.. -...++||++|.| .+++|
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i 145 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTI 145 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCEE
Confidence 344455555 344442 56788888888 66665421 1235889999999 56999
Q ss_pred CCCCeEeeeeeeeee
Q 017030 358 NPLCRRIWKCSSLCS 372 (378)
Q Consensus 358 ~~~~~~~~~~~~~~~ 372 (378)
+++++|+++|.+...
T Consensus 146 ~~g~~Ig~~~~Iga~ 160 (192)
T PRK09677 146 LPGVSIGNGCIVGAN 160 (192)
T ss_pred cCCCEECCCCEECCC
Confidence 999999999998643
No 237
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.24 E-value=0.00038 Score=41.25 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=13.4
Q ss_pred EEecCcEEc-ceEEeeceEcCCCEECCCCEE
Q 017030 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i 352 (378)
.||++|.|+ ++.| ...|+++|+|++|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 466666666 5444 4555555555555554
No 238
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.17 E-value=0.00031 Score=42.29 Aligned_cols=34 Identities=15% Similarity=-0.058 Sum_probs=23.8
Q ss_pred eceEcCCCEECCCCEEe-eeeeCCCCeEeeeeeee
Q 017030 337 HSVVGIRSRINANVHLK-VSPANPLCRRIWKCSSL 370 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~-~sIi~~~~~~~~~~~~~ 370 (378)
|+.|++++.|++++.|. ++.|++++.|+.+|.+.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 46777888888887744 37778888887777664
No 239
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=97.16 E-value=0.001 Score=59.68 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=14.0
Q ss_pred EccCCCCCCcee-eCceee---eeEEecCcEEc
Q 017030 303 YTSRRNLPPSKI-DDSKIV---DSIISHGSFIT 331 (378)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i~---~s~Ig~~~~I~ 331 (378)
.....|++.+.| .++.|. ..+||++|+||
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IG 171 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIE 171 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEEC
Confidence 344455555555 233442 34555555555
No 240
>PLN02357 serine acetyltransferase
Probab=97.13 E-value=0.00081 Score=62.24 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=37.2
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
+++||+||.|| ++.| .+..||++++||.|+.|...|--..+.+|.-+.+
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~PArv 328 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPARL 328 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCCeEE
Confidence 47899999999 8766 5888999999999999988755444444444433
No 241
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.10 E-value=0.0013 Score=50.57 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=15.0
Q ss_pred eceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 337 HSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
++.|+.++.|..+++|.+ |+|++++.+-.
T Consensus 62 ~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~ 91 (107)
T cd05825 62 GAWVAAEAFVGPGVTIGEGAVVGARSVVVR 91 (107)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEEeC
Confidence 345555555555555544 55555555543
No 242
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=97.09 E-value=0.0016 Score=58.78 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=18.3
Q ss_pred eeceEcCCCEECCCCEEeeeeeCCC----CeEeeeeee
Q 017030 336 EHSVVGIRSRINANVHLKVSPANPL----CRRIWKCSS 369 (378)
Q Consensus 336 ~~SiI~~~~~Ig~~~~i~~sIi~~~----~~~~~~~~~ 369 (378)
..++|+++|.||.+|.| .+.+..+ ++|+++|.+
T Consensus 223 sGavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lI 259 (341)
T TIGR03536 223 AGVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLL 259 (341)
T ss_pred cCCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEE
Confidence 35566666666666666 4444444 555555544
No 243
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=97.04 E-value=0.0034 Score=54.14 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=8.7
Q ss_pred eceEcCCCEECCCCEEe
Q 017030 337 HSVVGIRSRINANVHLK 353 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~ 353 (378)
..+||+|++|.+++.|.
T Consensus 81 ~l~IG~~n~IRE~vTi~ 97 (260)
T COG1043 81 RLIIGDNNTIREFVTIH 97 (260)
T ss_pred EEEECCCCeEeeEEEEe
Confidence 34455555555555553
No 244
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.04 E-value=0.0012 Score=55.95 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=48.7
Q ss_pred CCcEEccCCCCCCcee-eCc--ee-eeeEEecCcEEc-------------ceEE-eeceEcCCCEECCCCEEe-eeeeCC
Q 017030 299 TKPIYTSRRNLPPSKI-DDS--KI-VDSIISHGSFIT-------------SSFI-EHSVVGIRSRINANVHLK-VSPANP 359 (378)
Q Consensus 299 ~~~i~~~~~i~~~~~i-~~~--~i-~~s~Ig~~~~I~-------------~~~i-~~SiI~~~~~Ig~~~~i~-~sIi~~ 359 (378)
+..+...+.+..++.| +.+ +| .++.|++||.|. +..+ ....||++|.||.+|.|. ++.|++
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 152 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 152 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECC
Confidence 3345555666666666 333 33 367788887773 1122 466788888888888875 588888
Q ss_pred CCeEeeeeeeeeee
Q 017030 360 LCRRIWKCSSLCSV 373 (378)
Q Consensus 360 ~~~~~~~~~~~~~~ 373 (378)
++.|+.++.+..++
T Consensus 153 ~~vIgagsvV~~di 166 (183)
T PRK10092 153 NVVVASGAVVTKDV 166 (183)
T ss_pred CCEECCCCEEcccc
Confidence 88888887765543
No 245
>PLN02739 serine acetyltransferase
Probab=97.02 E-value=0.0014 Score=60.21 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=33.2
Q ss_pred EccCCCCCCcee-eCceee---------eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 303 YTSRRNLPPSKI-DDSKIV---------DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i~---------~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
..+++|+.++.| .++++. ...||+||.|| ++.| -+..||+|+.||.|+.|...
T Consensus 229 G~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD 293 (355)
T PLN02739 229 GETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD 293 (355)
T ss_pred CCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC
Confidence 334445555555 344442 35788888888 6555 45777777777777777654
No 246
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.96 E-value=0.00064 Score=53.36 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=47.8
Q ss_pred EEccCCCCCCcee--eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeee
Q 017030 302 IYTSRRNLPPSKI--DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSL 370 (378)
Q Consensus 302 i~~~~~i~~~~~i--~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~ 370 (378)
+..+++|.||-.+ .+...-+..||+++.|+ +|.|.-..||.-+++|+||.|.+ |+|-+=++|.|+.+++
T Consensus 63 ~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlP 135 (184)
T KOG3121|consen 63 LKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLP 135 (184)
T ss_pred eccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCcccC
Confidence 3445555555555 45555677788888888 78888888888888888777755 6666666666666554
No 247
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.083 Score=49.38 Aligned_cols=340 Identities=15% Similarity=0.166 Sum_probs=168.6
Q ss_pred cceeEEEEcCCCCcccccccccCcccceeecCeeeeeeeeh---hhhhhc-CCcEEEEE-eecC-hhhHHHHHHhhccCC
Q 017030 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM---SNCINS-GINKVYIL-TQYN-SASLNRHLARAYNYG 80 (378)
Q Consensus 7 ~~~~avIla~G~g~rl~plt~~~pK~llpi~g~~pli~~~l---~~l~~~-gi~~I~iv-~~~~-~~~i~~~l~~~~~~~ 80 (378)
+++..+=|-||.||-|+ ...||+++++-+....++-++ ++|.+. +++-=+|+ -+++ .++.+..++++....
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 34556669999999998 788999999976547776555 455442 33321222 2444 445666666553211
Q ss_pred ------CCcccCC-ceEEEeccccCCCc-CCCccc-cCcHHHHHHHH--HHhcCCCCCCCCeEEEEcCCeEEe-cCHHHH
Q 017030 81 ------SGVTFGD-GCVEVLAATQTPGE-AGKRWF-QGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYR-MDYMDF 148 (378)
Q Consensus 81 ------~~~~~~~-~~i~i~~~~~~~~~-~~~~~~-~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~~~~-~d~~~~ 148 (378)
+.++|.. ..-..++.....++ ....|| .|.|+-..... ..++.....+.+.+.|.+.|.+.. .|+ .+
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-NI 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-HH
Confidence 1111211 01122332221111 223454 46654432221 112111122368999999999764 454 46
Q ss_pred HHHHHHcCCcEEEEEeecCCCCCCcceEEEECCCCCEEEE--EecCCccchhcccccchhccccccccccCcceeeeeEE
Q 017030 149 VQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF--SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVY 226 (378)
Q Consensus 149 l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~--~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Giy 226 (378)
+++....+..-.|=+++... ..--|-..++-+|++..+ ..-|.+.. ..+.-.. .-...++.--
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~--aDvKgGtLi~y~G~lrlLEiaQVP~ehv-~eFkS~k------------kFkifNTNNl 322 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTR--ADVKGGTLIQYEGKLRLLEIAQVPKEHV-DEFKSIK------------KFKIFNTNNL 322 (498)
T ss_pred HHHHhcCCCceEEEecccch--hhcccceEEeecCEEEEEEeccCChhHh-hhhccce------------eEEEeccCCe
Confidence 66666666666555554332 111233333345655443 33333211 0000000 1124566666
Q ss_pred EEeHHHHHHHHhhhCCCC--------Cchhcccccccc------c--ccceEEEEecceEEecCCHHHHHHHHHhcccCC
Q 017030 227 LFKKEILLNLLRWRFPTA--------NDFGSEIIPASA------N--EQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (378)
Q Consensus 227 ~~~~~~l~~~l~~~~~~~--------~~~~~~~l~~l~------~--~~~i~~~~~~~~~~~i~t~~~~~~a~~~~l~~~ 290 (378)
.+.-..+++++++..-.+ .+...++++... + ...+....-...|..+.+-.|++-....+-.-.
T Consensus 323 WinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld 402 (498)
T KOG2638|consen 323 WINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLD 402 (498)
T ss_pred EEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeecc
Confidence 677777777766521110 000112222211 1 122333333446777777777766554443221
Q ss_pred CCc-c----ccCCCCcEEc-----------cCCC-CCCcee--eCcee-eeeEEecCcEEcceEEeeceEcCCCEECCCC
Q 017030 291 PMF-S----FYDATKPIYT-----------SRRN-LPPSKI--DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANV 350 (378)
Q Consensus 291 ~~~-~----~~~~~~~i~~-----------~~~i-~~~~~i--~~~~i-~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~ 350 (378)
.+. . .+.+..++.. ...+ +.|..+ +.-+| .|...|.|+...|.+|..+-=++.-.|-+|+
T Consensus 403 ~Gsl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~~~~~i~IP~gs 482 (498)
T KOG2638|consen 403 NGSLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIANEGDRIDIPDGS 482 (498)
T ss_pred CCeEEechhhcCCCCCeeecchhhhHHHHHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEecCCCeeecCCCC
Confidence 110 0 1111111100 0000 112222 23333 5888999999988777767667777788999
Q ss_pred EEeeeeeCCCCeEee
Q 017030 351 HLKVSPANPLCRRIW 365 (378)
Q Consensus 351 ~i~~sIi~~~~~~~~ 365 (378)
.++|+++..+..|.|
T Consensus 483 VLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 483 VLENKIVSGNLRILE 497 (498)
T ss_pred eeecceEeccccccc
Confidence 999999998887754
No 248
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=96.83 E-value=0.0022 Score=65.82 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=18.0
Q ss_pred eEcCCCEECCCCEE-eeeeeCCCCeEeeeeeee
Q 017030 339 VVGIRSRINANVHL-KVSPANPLCRRIWKCSSL 370 (378)
Q Consensus 339 iI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~~~~ 370 (378)
+||+||.||.++.| .++.|++++.|+.++.+.
T Consensus 162 ~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~ 194 (695)
T TIGR02353 162 TLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQ 194 (695)
T ss_pred EECCCcEECCCCEEcCCCEECCCCEECCCCEec
Confidence 56666666666555 445555555555555443
No 249
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=96.82 E-value=0.0019 Score=55.70 Aligned_cols=18 Identities=0% Similarity=-0.544 Sum_probs=13.9
Q ss_pred eeeeCCCCeEeeeeeeee
Q 017030 354 VSPANPLCRRIWKCSSLC 371 (378)
Q Consensus 354 ~sIi~~~~~~~~~~~~~~ 371 (378)
..+||++++|.+.+.|+-
T Consensus 81 ~l~IG~~n~IRE~vTi~~ 98 (260)
T COG1043 81 RLIIGDNNTIREFVTIHR 98 (260)
T ss_pred EEEECCCCeEeeEEEEec
Confidence 468888888888887764
No 250
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.78 E-value=0.0011 Score=39.19 Aligned_cols=31 Identities=13% Similarity=-0.138 Sum_probs=19.0
Q ss_pred ceEcCCCEECCCCEEeeeeeCCCCeEeeeeee
Q 017030 338 SVVGIRSRINANVHLKVSPANPLCRRIWKCSS 369 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~ 369 (378)
..||++|.||.++.| +..|+++|.|+.||.+
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 467888888888887 5667777777766655
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=96.69 E-value=0.0035 Score=64.40 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=32.1
Q ss_pred cCCCCCCceeeCceee---eeEEecCcEEc-ceEE------------eeceEcCCCEECCCCEE-eeeeeCCCCeEeeee
Q 017030 305 SRRNLPPSKIDDSKIV---DSIISHGSFIT-SSFI------------EHSVVGIRSRINANVHL-KVSPANPLCRRIWKC 367 (378)
Q Consensus 305 ~~~i~~~~~i~~~~i~---~s~Ig~~~~I~-~~~i------------~~SiI~~~~~Ig~~~~i-~~sIi~~~~~~~~~~ 367 (378)
.++|+++++|+...+. -+.||++|.|+ ++.| .+++||++|.||.++.| .++.|++++.|+.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~S 676 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDS 676 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 4556666666432221 24566666666 5544 24555555555555555 334444444444443
No 252
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=96.29 E-value=0.0095 Score=53.61 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=8.2
Q ss_pred ceEcCCCEECCCCEEee
Q 017030 338 SVVGIRSRINANVHLKV 354 (378)
Q Consensus 338 SiI~~~~~Ig~~~~i~~ 354 (378)
|+||++|.|+.++.|.+
T Consensus 200 vvIGd~~~IgpGvsI~G 216 (319)
T TIGR03535 200 VVVGDGSDIGGGASIMG 216 (319)
T ss_pred CEECCCCEECCCceecc
Confidence 44445555555555333
No 253
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.23 E-value=0.016 Score=49.68 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=27.9
Q ss_pred eceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeeeEee
Q 017030 337 HSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSVICM 376 (378)
Q Consensus 337 ~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~~~~ 376 (378)
-+++++.+.+|+++.|.+.|++.++.+.-.|.+-+-|+|-
T Consensus 33 ~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve 72 (277)
T COG4801 33 YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVE 72 (277)
T ss_pred eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEc
Confidence 3466677777777777777777777777777777777764
No 254
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=95.94 E-value=0.011 Score=52.06 Aligned_cols=61 Identities=10% Similarity=-0.069 Sum_probs=33.5
Q ss_pred CcEEccCCCCCCceeeCc----eeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEee
Q 017030 300 KPIYTSRRNLPPSKIDDS----KIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIW 365 (378)
Q Consensus 300 ~~i~~~~~i~~~~~i~~~----~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~ 365 (378)
++|..++.|+.++.|.++ .-.-.+||+||.|| + |.+.+|+.||+||.|.. .+|..+++|.+
T Consensus 157 a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAn-----s~~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 157 AQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGAN-----SEVVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred EEECCCcccCCcceEeEEecCCCCCCeEECCccEeccc-----cceEeeeEeCCCcEEecceEEeCCcceEE
Confidence 445555666666666331 11246899999998 5 44444444444444443 44555555544
No 255
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.90 E-value=0.017 Score=55.65 Aligned_cols=51 Identities=14% Similarity=-0.027 Sum_probs=30.6
Q ss_pred EEccCCCCCCcee-eCceeeeeEEecCcEEc-ceEEeeceEcC-----CCEECCCCEE
Q 017030 302 IYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGI-----RSRINANVHL 352 (378)
Q Consensus 302 i~~~~~i~~~~~i-~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~-----~~~Ig~~~~i 352 (378)
+..++.+.+++.+ +++.|.+|.|+.++.|| +|.|.++-+.. +..|-+++.+
T Consensus 281 ~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~~~~~~~~lpd~~~~ 338 (414)
T PF07959_consen 281 CVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSWSILPGLTLPDGVCL 338 (414)
T ss_pred eEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccccccccCcccCCceEE
Confidence 3445666666666 56667777777777777 66666554433 3345455554
No 256
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=95.61 E-value=0.037 Score=47.54 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=43.8
Q ss_pred eCceeeeeEEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeeeE
Q 017030 315 DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSVI 374 (378)
Q Consensus 315 ~~~~i~~s~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~~ 374 (378)
.++.++-.++|+...+| ++.|...+++.+++|+-||++.+ .+..+++-|++..+|-+-++
T Consensus 27 ~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~ 88 (277)
T COG4801 27 KNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLT 88 (277)
T ss_pred ccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEE
Confidence 45666777777777777 77777788888888888888876 55556677777777766543
No 257
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=95.25 E-value=0.034 Score=45.26 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=25.2
Q ss_pred eeeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 320 VDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 320 ~~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
.++.||++|.|+ ++.| .++.||++|+||.++.|...
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~ 109 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD 109 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc
Confidence 456677777777 6555 46777777777777777765
No 258
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.91 E-value=0.2 Score=39.78 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=65.1
Q ss_pred ceeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt 110 (378)
++|..|.++++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... ........ ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566665589999999999887 7788888876666666666543210 001 11111111 2488
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
+.++..+....+ .+.++++.+|..+..+ +..++..+.
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 899988887774 5899999999998888 455434433
No 259
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=94.65 E-value=0.047 Score=43.13 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=23.3
Q ss_pred eeceEcCCCEECCCCEEeeeeeC------CCCeEeeeeee
Q 017030 336 EHSVVGIRSRINANVHLKVSPAN------PLCRRIWKCSS 369 (378)
Q Consensus 336 ~~SiI~~~~~Ig~~~~i~~sIi~------~~~~~~~~~~~ 369 (378)
-+-.||+++-|+++|.+.-.-|+ .++.||++|++
T Consensus 83 fp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVl 122 (184)
T KOG3121|consen 83 FPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVL 122 (184)
T ss_pred eeeeecceEEEecceEeehhhheeeeEeccceeEcCceEh
Confidence 45678999999999888765544 45555555554
No 260
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.65 E-value=0.054 Score=46.41 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred eeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHH
Q 017030 39 AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118 (378)
Q Consensus 39 ~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~ 118 (378)
+ |||.|+++.+...++.+++++++. +.+.++... ++ +.++.... .|.+.+++.+.
T Consensus 30 ~-~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~---------~~---v~~i~~~~----------~G~~~si~~al 84 (195)
T TIGR03552 30 L-AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN---------LG---APVLRDPG----------PGLNNALNAAL 84 (195)
T ss_pred H-HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh---------cC---CEEEecCC----------CCHHHHHHHHH
Confidence 5 899999999999887888887763 334433321 11 22332111 28899999998
Q ss_pred HHhcCCCCCCCCeEEEEcCCe-EEecC-HHHHHHHH
Q 017030 119 WLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (378)
Q Consensus 119 ~~i~~~~~~~~~~~lv~~gD~-~~~~d-~~~~l~~h 152 (378)
+++... .+.++++.||+ ++..+ +.++++..
T Consensus 85 ~~~~~~----~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 85 AEAREP----GGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred HHhhcc----CCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 876421 25899999999 44544 77777754
No 261
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=94.42 E-value=0.035 Score=44.17 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEecCcEEc-ceEEeeceEcCCCEECCCCEEee-eeeCCCCeEeeeeeeee
Q 017030 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKV-SPANPLCRRIWKCSSLC 371 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i~~SiI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~ 371 (378)
+||.+-+.+ ||..+---+|++-+|+..|.+.+ +++.++|.||-+|.+..
T Consensus 80 iIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 80 IIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred EEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence 456655555 55555555555555555555543 55555566666665544
No 262
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=94.19 E-value=0.056 Score=45.44 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.3
Q ss_pred EEecCcEEc-ceEE-eeceEcCCCEECCCCEEeee
Q 017030 323 IISHGSFIT-SSFI-EHSVVGIRSRINANVHLKVS 355 (378)
Q Consensus 323 ~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~s 355 (378)
.||+|+.|| |++| -|=-||+|+.||.|+.+...
T Consensus 121 tIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 121 TIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred ccCCCeEECCCCEEEcceEECCCCEECCCceEccC
Confidence 677777777 6543 45568889999988888774
No 263
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=93.89 E-value=0.14 Score=43.91 Aligned_cols=37 Identities=16% Similarity=-0.079 Sum_probs=15.8
Q ss_pred eEcCCCEECCCCEEee-eeeCCCCeEeeeeeeeeeeEe
Q 017030 339 VVGIRSRINANVHLKV-SPANPLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 339 iI~~~~~Ig~~~~i~~-sIi~~~~~~~~~~~~~~~~~~ 375 (378)
.||+||-||.|+.|-+ --||+|++|+-|....-.|-|
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~ 239 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPP 239 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccceEEeccCC
Confidence 4445555554443322 334444444444444333333
No 264
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.01 E-value=1.6 Score=35.25 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=67.4
Q ss_pred ceeecCeeeeeeeehhhhhhc--CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCc
Q 017030 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~--gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt 110 (378)
.+|.-|....|..+++.+.+. ...+|+|+-+.......+.+.+... . ...++++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~--~-----~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE--S-----DPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC--C-----STTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc--c-----cccccccccccc---------ccc
Confidence 356666545777888887775 4457777764333344444443321 0 012444433322 478
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
+.++..+.+... .+.++++..|.+...+ +..+++.+.+.+.++.+...
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 888888888876 4799999999999888 78888888876776544443
No 265
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=91.83 E-value=0.54 Score=39.95 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=18.2
Q ss_pred eeEEecCcEEc-ceEE-eeceEcCCCEECCCCEEee
Q 017030 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 321 ~s~Ig~~~~I~-~~~i-~~SiI~~~~~Ig~~~~i~~ 354 (378)
.++||++|-|| ++.| -...||+|++||.++.+..
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 47888888888 5322 2234444444444444443
No 266
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=88.88 E-value=0.37 Score=38.53 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=14.1
Q ss_pred eEcCCCEECCCCEEeeeeeCCCCeEee
Q 017030 339 VVGIRSRINANVHLKVSPANPLCRRIW 365 (378)
Q Consensus 339 iI~~~~~Ig~~~~i~~sIi~~~~~~~~ 365 (378)
++.++|.||.+|.|...-..|..++..
T Consensus 115 ~vssgC~vGA~c~v~~~q~lpent~vY 141 (190)
T KOG4042|consen 115 SVSSGCSVGAKCTVFSHQNLPENTSVY 141 (190)
T ss_pred EEcCCceeccceEEecccccCCcceEE
Confidence 334566666666665554444444433
No 267
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=88.71 E-value=1.2 Score=33.68 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=41.6
Q ss_pred eCceeeeeEEecCcEEcceEEeeceEc-CCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 315 DDSKIVDSIISHGSFITSSFIEHSVVG-IRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 315 ~~~~i~~s~Ig~~~~I~~~~i~~SiI~-~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
+++.++..+-++.+.|.|. +...+.. +.+.|...++|.+.|-.+...|.+++.+++++
T Consensus 41 ~~~~v~G~i~~~~~~i~G~-v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G~~ 99 (101)
T PF04519_consen 41 GNGEVKGDIKADDVIISGS-VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASINGNV 99 (101)
T ss_pred CCCEEEEEEEEeEEEEcCE-EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEEEE
Confidence 3455555555666666543 6666666 55678888888888888888888888888875
No 268
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=87.02 E-value=0.75 Score=39.58 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=19.5
Q ss_pred eEEecCcEEc-c-eEEeeceEcCCCEECCCCEEee
Q 017030 322 SIISHGSFIT-S-SFIEHSVVGIRSRINANVHLKV 354 (378)
Q Consensus 322 s~Ig~~~~I~-~-~~i~~SiI~~~~~Ig~~~~i~~ 354 (378)
=.||+||-|| + +.+=|--||+|++|+.|+.+..
T Consensus 201 P~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 201 PKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred CcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 3688888888 5 3334455555555555555443
No 269
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.67 E-value=9.7 Score=30.60 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=61.0
Q ss_pred eeecCeeeeeeeehhhhhhc--CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~--gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|.-|+..++..+++.+.+. ...+++|+.........+.+.+... .+.++.... ..|.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~~---------~~g~~ 63 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNGE---------NLGFG 63 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecCC---------CcChH
Confidence 45556556778888888765 3457777765444444455543220 133332111 14788
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
.++..+....+ .+.++++..|..+..+ +..+++.+.+.
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 88888887774 5899999999988877 67777755544
No 270
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=83.10 E-value=1.3 Score=47.02 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=34.7
Q ss_pred eEEeeceEcCCCEECCC-CEEeeeeeCCCCeEeeeeeeeee
Q 017030 333 SFIEHSVVGIRSRINAN-VHLKVSPANPLCRRIWKCSSLCS 372 (378)
Q Consensus 333 ~~i~~SiI~~~~~Ig~~-~~i~~sIi~~~~~~~~~~~~~~~ 372 (378)
+.|.||+|..++++|++ +.|++|.|+++.+|+++|++-+.
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 56889999999999988 55899999999999999998654
No 271
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=82.86 E-value=9 Score=33.26 Aligned_cols=96 Identities=10% Similarity=0.191 Sum_probs=59.2
Q ss_pred eeecCee-eeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHH
Q 017030 34 VPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (378)
Q Consensus 34 lpi~g~~-pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~ 112 (378)
+|.-|.. +.|..+|+.+.+....+|+|+.....+...+.+.... . . ..+.++... . .|-+.
T Consensus 6 Ip~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~--~----~--~~~~v~~~~-~---------~g~~~ 67 (235)
T cd06434 6 IPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV--K----Y--GGIFVITVP-H---------PGKRR 67 (235)
T ss_pred EeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc--c----C--CcEEEEecC-C---------CChHH
Confidence 4555554 5677778887765456887777545545444442211 0 0 012333211 1 36778
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 113 al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
++..+....+ .+.++++.+|.....+ +..+++.+.
T Consensus 68 a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 8877766654 5899999999999888 677777654
No 272
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=82.82 E-value=0.76 Score=44.11 Aligned_cols=66 Identities=29% Similarity=0.484 Sum_probs=45.3
Q ss_pred ccceeEEEEcCCCCcccccccccCcccceeecC---eeeeeeeehhhhhh----------cCCc-EEEEEe-ecChhhHH
Q 017030 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG---AYRLIDVPMSNCIN----------SGIN-KVYILT-QYNSASLN 70 (378)
Q Consensus 6 ~~~~~avIla~G~g~rl~plt~~~pK~llpi~g---~~pli~~~l~~l~~----------~gi~-~I~iv~-~~~~~~i~ 70 (378)
..+..++++|||.|||+. ...||.+.|++- + .++++..+.+.. .|.+ ..+|.+ ....+...
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~-slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~ 170 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGK-SLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATL 170 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCcccc-chhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhH
Confidence 456789999999999998 789999999985 4 577777665432 1211 234555 34455667
Q ss_pred HHHHh
Q 017030 71 RHLAR 75 (378)
Q Consensus 71 ~~l~~ 75 (378)
+++..
T Consensus 171 ~~f~~ 175 (477)
T KOG2388|consen 171 EYFES 175 (477)
T ss_pred hHHhh
Confidence 77764
No 273
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=80.53 E-value=11 Score=33.15 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.|-+.++..+..... .+.++++.+|...+.+ +.++++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 477888887776654 4899999999987776 778888766666665443
No 274
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=78.82 E-value=14 Score=32.10 Aligned_cols=103 Identities=10% Similarity=0.181 Sum_probs=59.6
Q ss_pred eeecCeeeeeeeehhhhhhcCC----cEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccC
Q 017030 34 VPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~gi----~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~G 109 (378)
+|.-|.++.+..+++.+.+... -+|+|+-+...+...+.++... .. ...+.++.... .|
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~---~~----~~~v~~i~~~~----------~~ 68 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA---AK----DPRIRLIDNPK----------RI 68 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH---hc----CCeEEEEeCCC----------CC
Confidence 4555544566677777766533 3677766444444444443321 00 01134433211 25
Q ss_pred cHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcE
Q 017030 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ 159 (378)
-+.++..+.+..+ .+.++++.+|.....+ +..+++.+...+.++
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 5677777766654 5899999999988777 788887665555444
No 275
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=78.50 E-value=13 Score=30.66 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred eeecCeeeeeeeehhhhhhc----CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccC
Q 017030 34 VPIGGAYRLIDVPMSNCINS----GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~----gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~G 109 (378)
+|.-+....+..+|+.+.+. ...+|+|+-+...+...+.++... .++. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~-----~~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA-----ARVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH-----HhCC--CeEEEEccCC---------CC
Confidence 34444433455666776665 356777776443333444443221 0111 1223322222 47
Q ss_pred cHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEE
Q 017030 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.+.++..+.+... .+.++++.+|.....+ +.+++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 8888888777664 4889999999977777 788888655555555443
No 276
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=78.03 E-value=13 Score=29.73 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=57.3
Q ss_pred eeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|.-|.+..|..+|+.+.+.. ..+++|+-....+...+.+....... . ..+.++.... ..|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~-----~-~~~~~~~~~~---------~~g~~ 67 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALY-----I-RRVLVVRDKE---------NGGKA 67 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccc-----c-ceEEEEEecc---------cCCch
Confidence 455565456677777777653 34676765433333333443321000 0 0122221111 14788
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
.++..+..... .+.++++.+|.+...+ +..++..+.+.
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 88888877764 5899999999988777 66664555443
No 277
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=75.88 E-value=15 Score=31.36 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=37.1
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.|.+.++..+..... .+.++++.+|...+.+ +..+++...+.+.++.+.
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 488899998887765 4899999999988777 778887655555555443
No 278
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.08 E-value=27 Score=29.82 Aligned_cols=105 Identities=9% Similarity=0.083 Sum_probs=58.4
Q ss_pred eeecCeeeeeeeehhhhhhcC---CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCc
Q 017030 34 VPIGGAYRLIDVPMSNCINSG---INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~g---i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt 110 (378)
+|.-|....|..+++.+.+.- .-+|+||-..-.+...+.+++.. . .. ..+.++..... .|-
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~--~---~~--~~i~~~~~~~n---------~G~ 66 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA--K---EY--PRVRLIVRPGK---------RGL 66 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH--H---hC--CceEEEecCCC---------CCh
Confidence 455555345666677766532 34676665332233333332211 0 00 01233322221 478
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEE
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~t 160 (378)
+.++..+..... .+.++++.+|.....+ +..+++.....+.++.
T Consensus 67 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 67 GSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 888888877665 4888999999977776 7777776555555543
No 279
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=71.04 E-value=22 Score=31.15 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=61.0
Q ss_pred cccCcc--cceeecCeeeeeeeehhhhhhcCC----cEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCC
Q 017030 26 TKQRAK--PAVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTP 99 (378)
Q Consensus 26 t~~~pK--~llpi~g~~pli~~~l~~l~~~gi----~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~ 99 (378)
....|+ -++|.-|....|...|+.+.+... -+++|+.....+...+.+.+.. .. .+.++.....
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~~------~v~~i~~~~~- 94 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYA---DK------GVKLLRFPER- 94 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHh---hC------cEEEEEcCCC-
Confidence 334444 456666764566666777655322 2677766444444444443211 10 1333322111
Q ss_pred CcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 100 GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 100 ~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
.|-+.++..+.+... .+.++++.+|.+...+ +.++++...
T Consensus 95 --------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 95 --------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred --------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 478888888877765 4899999999988877 777777653
No 280
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=68.40 E-value=26 Score=26.17 Aligned_cols=42 Identities=2% Similarity=-0.116 Sum_probs=23.0
Q ss_pred ceEEeeceEcCCCEECCCCEEeeeeeC-CCCeEeeeeeeeeeeEe
Q 017030 332 SSFIEHSVVGIRSRINANVHLKVSPAN-PLCRRIWKCSSLCSVIC 375 (378)
Q Consensus 332 ~~~i~~SiI~~~~~Ig~~~~i~~sIi~-~~~~~~~~~~~~~~~~~ 375 (378)
++.|...+-.+.++|. |. +.+.+.. ..+++...+.+.+.+.|
T Consensus 42 ~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G~i~~ 84 (101)
T PF04519_consen 42 NGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEGDITA 84 (101)
T ss_pred CCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEEEEEE
Confidence 3444444555555553 33 5555555 44556666666666654
No 281
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=65.40 E-value=41 Score=30.65 Aligned_cols=104 Identities=10% Similarity=0.081 Sum_probs=58.0
Q ss_pred eeecCee-eeeeeehhhhhhcC---C-cEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCcccc
Q 017030 34 VPIGGAY-RLIDVPMSNCINSG---I-NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (378)
Q Consensus 34 lpi~g~~-pli~~~l~~l~~~g---i-~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 108 (378)
+|.-|.. ..|...|+.+.+.- . .+|+||-+.-.+...+.+.+..... .. ..+.++..... .
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~---~~--~~v~vi~~~~n---------~ 69 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK---YL--PKVKVLRLKKR---------E 69 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh---cC--CcEEEEEcCCC---------C
Confidence 4555553 36666777766532 1 3777775333222222221100000 00 11444432222 4
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCC
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~ 157 (378)
|-+.+.-.+..... .+.++++++|.....+ +..+++...+...
T Consensus 70 G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 77788777766654 4899999999988777 7888887765543
No 282
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.76 E-value=34 Score=28.34 Aligned_cols=97 Identities=8% Similarity=0.035 Sum_probs=55.3
Q ss_pred eeecCeeeeeeeehhhhhhcCCc--EEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~gi~--~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|.-|....|..+|+.+.+.... +|+|+-+.......+.+.+.. . ..+.+.. .. ..|.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~---~------~~~~~~~-~~---------~~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE---D------KITYWIS-EP---------DKGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH---h------hcEEEEe-cC---------CcCHH
Confidence 34444435667777777665444 566664333333444443321 0 0122221 11 14788
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
.++..+.+..+ .+.++++.+|.....+ +..+++...+.
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 88888877664 4899999999977766 77777444433
No 283
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=64.41 E-value=56 Score=27.30 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=56.5
Q ss_pred ceeecCee--eeeeeehhhhhhcC--CcEEEEEeecC-hhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccc
Q 017030 33 AVPIGGAY--RLIDVPMSNCINSG--INKVYILTQYN-SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (378)
Q Consensus 33 llpi~g~~--pli~~~l~~l~~~g--i~~I~iv~~~~-~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 107 (378)
++|+-|.. ..|..+|+.+.+.- -.+++|+-... .....+.+.... . +.+ +.++.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~--~---~~~---i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFK--R---KLP---LKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHH--h---cCC---eEEEEcCcc---------
Confidence 45666551 26778888887643 25666664322 233333332211 0 111 333322221
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~ 154 (378)
.|.+.+...+....+ .+.++++.+|.+...+ +..+++...+
T Consensus 66 ~G~~~a~N~g~~~a~------gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 66 RGLGKALNEGLKHCT------YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 478888877776654 4889999999988877 6777776543
No 284
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=64.11 E-value=55 Score=28.59 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=36.3
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~ 162 (378)
.|.+.++..+..... .+.++.+.+|.....+ +.++++.+.+.+.++.++
T Consensus 70 ~G~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 70 RTKPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred CchHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 477888888877654 4899999999988888 778888776544554443
No 285
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.19 E-value=43 Score=28.57 Aligned_cols=105 Identities=9% Similarity=0.053 Sum_probs=57.1
Q ss_pred ceeecCeeeeeeeehhhhhhcC--C--cEEEEEeecChhhHHHHHH-hhccCCCCcccCCceEEEeccccCCCcCCCccc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSG--I--NKVYILTQYNSASLNRHLA-RAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~g--i--~~I~iv~~~~~~~i~~~l~-~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 107 (378)
++|.-|....|..+|+.+.+.. . -+|+|+-+...+...+.+. ... ... ..+.++...... .
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~--~~~-----~~v~~~~~~~~~-------~ 67 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAA--KPN-----FQLKILNNSRVS-------I 67 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHh--CCC-----cceEEeeccCcc-------c
Confidence 3566665456777777775532 2 3666665433333333332 110 000 113333322110 1
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCC
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~ 157 (378)
.|-+.++..+..... .+.++++.+|.+...+ +..+++.+.+.+.
T Consensus 68 ~g~~~a~n~g~~~~~------~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 68 SGKKNALTTAIKAAK------GDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred chhHHHHHHHHHHhc------CCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 366667766665544 4899999999988888 7788876654443
No 286
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=61.74 E-value=37 Score=27.85 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=53.0
Q ss_pred eeecCeeeeeeeehhhhhhc--CCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~--gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|.-|....+..+|+.+.+. ...+|+|+-........+.+++.. . ......+.+...... .|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~---~--~~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK---S--QFPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH---h--hcCCceEEEEcCCcc---------hhHH
Confidence 45555545667778877653 234777665433333444443221 0 011112222221111 2455
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHH
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h 152 (378)
.++..+.+... .+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 66666665544 4899999999988777 66666654
No 287
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=60.35 E-value=33 Score=27.87 Aligned_cols=57 Identities=4% Similarity=-0.115 Sum_probs=36.1
Q ss_pred ceeeeeEEecCcEEcceEEeeceEcCCCEECCCCEEeeeeeCCCCeEeeeeeeeeee
Q 017030 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKVSPANPLCRRIWKCSSLCSV 373 (378)
Q Consensus 317 ~~i~~s~Ig~~~~I~~~~i~~SiI~~~~~Ig~~~~i~~sIi~~~~~~~~~~~~~~~~ 373 (378)
.+|+..+..+.-+|.|...-|-...+.+.|...+++.+-|-+...++.+++.+.|.+
T Consensus 64 g~V~gei~a~~~iv~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~~ 120 (146)
T COG1664 64 GRVEGEIEAEHLIVEGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDC 120 (146)
T ss_pred cEEEEEEEeCEEEEeeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeEE
Confidence 344444444444443222223444567788888888888888888888888887765
No 288
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=59.77 E-value=5.8 Score=34.32 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHH
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h 152 (378)
|.+.++..+..... .+.++++..|.+.+.+ +..+++.+
T Consensus 73 ~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 73 GKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHH
Confidence 35677777777665 5899999999999887 77878777
No 289
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=59.70 E-value=51 Score=27.08 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=33.4
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ 159 (378)
.|.+.++..+..... .+.++++.+|.....+ +..+++. .+.+.++
T Consensus 66 ~G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~ 111 (181)
T cd04187 66 FGQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDV 111 (181)
T ss_pred CCcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcE
Confidence 488888888877654 4899999999987766 6777776 4445544
No 290
>PRK11204 N-glycosyltransferase; Provisional
Probab=58.43 E-value=54 Score=31.53 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=58.6
Q ss_pred ceeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt 110 (378)
++|.-|....+..+++.+.+.. --+|+|+-....+...+.+++.. . +.. .+.++..... .|-
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~--~---~~~--~v~~i~~~~n---------~Gk 122 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA--A---QIP--RLRVIHLAEN---------QGK 122 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH--H---hCC--cEEEEEcCCC---------CCH
Confidence 3455565456777777776543 23676665433333333332211 0 000 1333331111 478
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
++++..+.+..+ .+.++++.+|.+...| +..+++.+.+.
T Consensus 123 a~aln~g~~~a~------~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 123 ANALNTGAAAAR------SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred HHHHHHHHHHcC------CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 888888877654 5899999999988888 77887766443
No 291
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.84 E-value=63 Score=27.42 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=52.3
Q ss_pred eeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|.-|.++.|...|+.+.+.- ..+|+|+-+...+...+.+.+ . .+.++.. . .|-+
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~-----------~~~~~~~--~---------~g~~ 61 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A-----------GVVVISS--P---------KGRA 61 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C-----------CeEEEeC--C---------cCHH
Confidence 455555345666677766532 246666653333334444432 0 1222221 1 3566
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcC
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~ 156 (378)
.+...+..... .+.++++..|.....+ +..++..+...+
T Consensus 62 ~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 62 RQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 77766666554 4899999999988777 566655444433
No 292
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=57.37 E-value=1.1e+02 Score=25.59 Aligned_cols=36 Identities=11% Similarity=-0.073 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHH
Q 017030 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (378)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h 152 (378)
+.++..+.+... .+.++++.+|...+.+ +..+++..
T Consensus 75 ~~~~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 75 VNNLIKGYEEAR------YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCceEChhHHHHHHHHh
Confidence 344544544433 4889999999988777 67776653
No 293
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=57.30 E-value=94 Score=26.44 Aligned_cols=101 Identities=14% Similarity=0.209 Sum_probs=57.3
Q ss_pred eeeeeehhhh-hhcCCc-EEEEEee--cCh-hhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHHHHH
Q 017030 41 RLIDVPMSNC-INSGIN-KVYILTQ--YNS-ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVR 115 (378)
Q Consensus 41 pli~~~l~~l-~~~gi~-~I~iv~~--~~~-~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~ 115 (378)
|++-|.+... .+.|.+ +|+|+=. .+. .+..+.+.+.+ +...+.+.+-... +|.+.|..
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--------g~d~i~l~pR~~k---------lGLgtAy~ 81 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--------GEDNILLKPRTKK---------LGLGTAYI 81 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--------CCCcEEEEeccCc---------ccchHHHH
Confidence 5666666554 445665 5555532 221 23444444333 2223444432222 57777777
Q ss_pred HHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEEe
Q 017030 116 QFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 164 (378)
Q Consensus 116 ~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~~ 164 (378)
.++.+.+ .+-++++.+|.--.+. +.++++...+.+.+++....
T Consensus 82 hgl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 82 HGLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred hhhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 7777665 3667778888755555 67888877666667666543
No 294
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=56.70 E-value=53 Score=32.02 Aligned_cols=101 Identities=16% Similarity=0.040 Sum_probs=58.3
Q ss_pred cceeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccC
Q 017030 32 PAVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (378)
Q Consensus 32 ~llpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~G 109 (378)
-++|.-|...-+..+++.+.+.. --+|+|+-....+...+.+.+.. . +.. .+.++..... .|
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~--~---~~~--~v~vv~~~~n---------~G 142 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALL--A---EDP--RLRVIHLAHN---------QG 142 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHH--H---hCC--CEEEEEeCCC---------CC
Confidence 45677776455667777776542 23777775333333333332211 0 000 1334332222 37
Q ss_pred cHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH
Q 017030 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (378)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~ 154 (378)
-+.++..+....+ .+.++++.+|.+.+.| +..+++.+.+
T Consensus 143 ka~AlN~gl~~a~------~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 143 KAIALRMGAAAAR------SEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHHHhCC------CCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 7888888766543 5899999999999888 6777776544
No 295
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=55.95 E-value=88 Score=29.08 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=34.7
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~t 160 (378)
.|.+.|+..+..+.+ .+.++++.+|.-.+.+ +.++++... .++++.
T Consensus 76 ~G~~~A~~~G~~~A~------gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT------GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC------CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 488899988877664 4889999999977765 788888664 456643
No 296
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=54.20 E-value=77 Score=26.42 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=30.4
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h 152 (378)
.|.+.++..+..... .+.++++..|.....+ +..+++.+
T Consensus 69 ~g~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 69 GGISAATNSALELAT------GEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CCHHHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHH
Confidence 477888877776654 4889999999988877 77888776
No 297
>PRK10073 putative glycosyl transferase; Provisional
Probab=53.43 E-value=90 Score=29.06 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=35.8
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti 161 (378)
.|.+.|.-.+.+... .+.++++.+|-+...+ +..+++...+.+.++.+
T Consensus 71 ~G~~~arN~gl~~a~------g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 71 AGVSVARNTGLAVAT------GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CChHHHHHHHHHhCC------CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 377888877776664 4899999999988877 67778776656666544
No 298
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.67 E-value=1.1e+02 Score=25.70 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=29.6
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~ 154 (378)
.|.+.++..+....+ .+.++++..|..+..+ +..+++...+
T Consensus 65 ~G~~~~~n~g~~~~~------g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 65 LGVARNFESLLQAAD------GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred ccHHHHHHHHHHhCC------CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 477777777755443 5889999999988777 7777776333
No 299
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=47.51 E-value=1.4e+02 Score=25.52 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred eeecCee-eeeeeehhhhhhcCCc----EEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCcccc
Q 017030 34 VPIGGAY-RLIDVPMSNCINSGIN----KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (378)
Q Consensus 34 lpi~g~~-pli~~~l~~l~~~gi~----~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 108 (378)
+|.-|.. .++...++.+.+.... +|+|+-....+...+.+.... . ++. +.++...... .
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~--~~~---~~~~~~~~~~--------~ 70 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG---V--EYG---YRYLTRPDNR--------H 70 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh---c--ccC---ceEEEeCCCC--------C
Confidence 4455541 2566677777664332 677766444444544443321 1 111 1222111111 1
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~ 154 (378)
+.++++..+.+... .+.++++.+|.+.+.+ +..+++...+
T Consensus 71 ~~~~~~n~~~~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 71 AKAGNLNNALAHTT------GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CcHHHHHHHHHhCC------CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 34566666666553 5899999999988888 6777776544
No 300
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=46.96 E-value=1.1e+02 Score=29.90 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
.|-+.|+..+.+... .+.++++.+|.+.+.| +.++++.+.+.
T Consensus 117 ~Gka~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 117 QGKAKALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CCHHHHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 378899988877654 4889999999998888 78888776543
No 301
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=44.98 E-value=1.7e+02 Score=23.97 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=56.8
Q ss_pred ceeecCeeeeeeeehhhhhhcCC----cEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCcccc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~gi----~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 108 (378)
++|.-|....|..+++.+.+... -+|+|+.....+...+.+... . .. +..... .. ..
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---~------~~-~~~~~~-~~--------~~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---G------AT-VLERHD-PE--------RR 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---C------Ce-EEEeCC-CC--------CC
Confidence 35555543456666777765322 367666643334344443321 1 11 111111 11 13
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCc
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGAD 158 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~ 158 (378)
|.+.++..+....... ....+.++++.+|.....+ +..+++.+. .+.+
T Consensus 63 gk~~aln~g~~~a~~~-~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~ 111 (183)
T cd06438 63 GKGYALDFGFRHLLNL-ADDPDAVVVFDADNLVDPNALEELNARFA-AGAR 111 (183)
T ss_pred CHHHHHHHHHHHHHhc-CCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCC
Confidence 7788888777665300 0014789999999998888 677777654 3444
No 302
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.14 E-value=1.5e+02 Score=24.77 Aligned_cols=100 Identities=8% Similarity=0.025 Sum_probs=53.5
Q ss_pred eeecCeeeeeeeehhhhhhcC--CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcH
Q 017030 34 VPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~g--i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~ 111 (378)
+|--|....|..+|+.+.+.. ..+|+|+-+...+...+.+.+.. . ... +.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~---~--~~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG---D--LDN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc---C--CCc---eEEEECccc---------cchh
Confidence 344443345667777776642 23676665433344445554321 1 111 233322211 4666
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
.++..+.+..... ..+.++++..|.....+ +..+++...
T Consensus 66 ~~~n~~~~~a~~~---~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYEL---GYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhcc---CCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 6666655544211 14789999999988887 666666554
No 303
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=42.16 E-value=1.2e+02 Score=28.85 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=54.0
Q ss_pred ceeecCeeeeeeeehhhhhhcCC--cEEEEEeecChhh---HHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSAS---LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~gi--~~I~iv~~~~~~~---i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~ 107 (378)
++|.-|..+.|...++.+.+..- -+|+++.....+. +.+.+.+.+ ....++++......+ .
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~--------p~~~i~~v~~~~~~G------~ 111 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF--------PDADIDLVIDARRHG------P 111 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC--------CCCceEEEECCCCCC------C
Confidence 56777765778888888776432 4776665333222 222222222 111133342222211 0
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
.+-..++..+.+..+ .+.++++.+|.....| ++.++....
T Consensus 112 ~~K~~~l~~~~~~a~------ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 112 NRKVSNLINMLPHAR------HDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred ChHHHHHHHHHHhcc------CCEEEEECCCCCcChhHHHHHHHHhc
Confidence 123345544433332 5899999999988888 677776553
No 304
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=41.77 E-value=1.6e+02 Score=27.96 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=61.1
Q ss_pred ceeecCeeeeeeeehhhhhhcCC---cEEEEEeecChhhHHHHHHhhcc-CCCCcccCCceEEEeccccCCCcCCCcccc
Q 017030 33 AVPIGGAYRLIDVPMSNCINSGI---NKVYILTQYNSASLNRHLARAYN-YGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (378)
Q Consensus 33 llpi~g~~pli~~~l~~l~~~gi---~~I~iv~~~~~~~i~~~l~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 108 (378)
.+|.-|..+.|...++.+.+... -+|+|+-+...+...+.+++... ... ...+.++...... .| ..
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~-----~~~i~vi~~~~~~--~g---~~ 114 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGR-----GDRLTVVSGQPLP--PG---WS 114 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCC-----CCcEEEecCCCCC--CC---Cc
Confidence 44555644677888888876432 36777664333332222221100 000 0014444321111 01 13
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcE
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ 159 (378)
|-+.++..+.+...+. ....+.++++.+|.....+ +.++++...+.+.++
T Consensus 115 Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 115 GKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred chHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 5566777766655410 1113789999999988877 788888766655543
No 305
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=39.97 E-value=26 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=18.5
Q ss_pred CeeeeeeeehhhhhhcCCcEEEEE
Q 017030 38 GAYRLIDVPMSNCINSGINKVYIL 61 (378)
Q Consensus 38 g~~pli~~~l~~l~~~gi~~I~iv 61 (378)
+. |-++..++.+.+.|.++|+|+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 45 788888888888888888775
No 306
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=39.19 E-value=8.9 Score=33.42 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=46.5
Q ss_pred eeEEEEcCCCC---cccccc-cccCcccceeecCeeeeeeeehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcc
Q 017030 9 VAAVILGGGAG---TRLYPL-TKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (378)
Q Consensus 9 ~~avIla~G~g---~rl~pl-t~~~pK~llpi~g~~pli~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (378)
|.+||+.-... |||.|. +...-..| -. .|+..++..+.. +. ++|++. . +.+.+.-. ..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~~L----a~-aMl~Dvl~al~~--v~-v~vVs~-d-~~v~~~a~--------~~ 62 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEEREAL----AL-AMLRDVLAALRA--VD-VVVVSR-D-PEVAALAR--------AR 62 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHHHH----HH-HHHHHHHHHHHH---S-EEEEES----S-TTTTT----------
T ss_pred CeEEEEcCCCCccccccCccCCHHHHHHH----HH-HHHHHHHHHHHh--cC-eEEecc-c-hhhhhhhh--------hc
Confidence 67888775443 788653 11100001 12 478888988877 55 666653 2 11211110 01
Q ss_pred cCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCe--EEecCHHHHHHHH
Q 017030 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 152 (378)
Q Consensus 85 ~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--~~~~d~~~~l~~h 152 (378)
++ ++++.+. . .|.-.||..+..... .++++++++|+ +...|+..++...
T Consensus 63 ~g---~~vl~d~-~---------~gLN~Al~~a~~~~~------~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 63 LG---AEVLPDP-G---------RGLNAALNAALAAAG------DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp -S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred cC---CeEecCC-C---------CCHHHHHHHHHhccC------CCceEEeecCCccCCHHHHHHHHhcc
Confidence 22 3344332 1 256677777733333 58999999999 4445588777653
No 307
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=38.12 E-value=2.5e+02 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=27.9
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFV 149 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l 149 (378)
.|-+.+...+.+.... ...+.++++.+|...+.+ +..++
T Consensus 58 ~G~~~a~N~g~~~a~~---~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 58 LGIAKALNIGIKAALE---NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred eehHHhhhHHHHHHHh---CCCCEEEEECCCCCcCHhHHHHHH
Confidence 4777777777665531 114899999999988877 66664
No 308
>PRK10018 putative glycosyl transferase; Provisional
Probab=37.85 E-value=2.4e+02 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=30.8
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~ 154 (378)
.|.+.+.-.+..... .+.++++.+|.....+ +..+++...+
T Consensus 71 ~G~~~a~N~gi~~a~------g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 71 SGACAVRNQAIMLAQ------GEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 478888777766654 4899999999988877 7777775443
No 309
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=37.81 E-value=1.9e+02 Score=24.93 Aligned_cols=39 Identities=15% Similarity=-0.018 Sum_probs=28.0
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHH
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h 152 (378)
.|-+.+...+..... .+.++++.+|.+...+ +..+.+..
T Consensus 57 ~g~~~~~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~ 96 (229)
T cd02511 57 DGFGAQRNFALELAT------NDWVLSLDADERLTPELADEILALL 96 (229)
T ss_pred CChHHHHHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHH
Confidence 367777777766654 4799999999988877 45555543
No 310
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=37.46 E-value=1.5e+02 Score=25.39 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=54.9
Q ss_pred ceeecCeee-eeeeehhhhhhcCC--cEEEEEeecCh-hhH----HHHHHhhccCCCCcccCCceEEEeccccCCCcCCC
Q 017030 33 AVPIGGAYR-LIDVPMSNCINSGI--NKVYILTQYNS-ASL----NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGK 104 (378)
Q Consensus 33 llpi~g~~p-li~~~l~~l~~~gi--~~I~iv~~~~~-~~i----~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 104 (378)
++|.-|..| +|...++.+.+... -+|+|+-+... ... ++...+ . .. .+.++.....
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~--~~-------~i~~i~~~~~------ 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-L--GE-------RFRFFHVEPL------ 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-h--CC-------cEEEEEcCCC------
Confidence 356666532 67777888876543 36766653222 222 233322 1 11 1223322211
Q ss_pred ccccC-cHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHH
Q 017030 105 RWFQG-TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (378)
Q Consensus 105 ~~~~G-t~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~ 153 (378)
.| .++++..+.+..... .+.++++.+|.....+ +.+++....
T Consensus 67 ---~G~~~~a~n~g~~~a~~~----~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 ---PGAKAGALNYALERTAPD----AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred ---CCCchHHHHHHHHhcCCC----CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 24 477787777665320 4789999999988888 778877653
No 311
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=37.03 E-value=1.9e+02 Score=25.87 Aligned_cols=45 Identities=20% Similarity=-0.035 Sum_probs=32.7
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
.|-+.|...+.+..... ..+.++++..|.....+ +..+++...+.
T Consensus 56 ~G~a~a~N~Gi~~a~~~---~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 56 QGIAGAQNQGLDASFRR---GVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred cchHHHHHHHHHHHHHC---CCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 58888888887765311 15899999999988877 67777765544
No 312
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=33.47 E-value=2.1e+02 Score=30.72 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCCcEEEEE
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~~~ti~~ 163 (378)
|-++++-.+....+ .+.++++.+|.+...| +..++..+.+.. .+.++.
T Consensus 326 gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQ 374 (852)
T PRK11498 326 AKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQ 374 (852)
T ss_pred chHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEE
Confidence 56888888877664 5899999999998888 566666554433 344443
No 313
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=31.74 E-value=2.5e+02 Score=26.14 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=33.8
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHH---cCCcEEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ---SGADITIS 162 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~---~~~~~ti~ 162 (378)
.|.+.|+..+...-. .+.++++.+|...+.+ +..+++...+ .+.++.+.
T Consensus 148 ~G~~~A~~~Gi~~a~------gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 148 KGKGGAVRIGMLASR------GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred CChHHHHHHHHHHcc------CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 488899988876543 4889999999977766 6666665443 44444443
No 314
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=31.42 E-value=39 Score=24.92 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=14.8
Q ss_pred eeeeeehhhhhhcCCcEEEEEe
Q 017030 41 RLIDVPMSNCINSGINKVYILT 62 (378)
Q Consensus 41 pli~~~l~~l~~~gi~~I~iv~ 62 (378)
|-++-.++.+.+.|+++|+++-
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEe
Confidence 6666667777777777766553
No 315
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=28.75 E-value=1.9e+02 Score=27.71 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=65.1
Q ss_pred ceeecCeee-eeeeehhhhhhcCCc--EEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccC
Q 017030 33 AVPIGGAYR-LIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (378)
Q Consensus 33 llpi~g~~p-li~~~l~~l~~~gi~--~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~G 109 (378)
++|.-|.++ .++.+++.+.+.... +|+++.....+...+.+.+.. .+++ ..+.+...... ..|
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-----~~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-----AEYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-----hhcC-cceEEEecccc--------Ccc
Confidence 346667657 888889988886543 787777544444444544332 1110 01222211011 147
Q ss_pred cHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcCC
Q 017030 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (378)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~~ 157 (378)
.++++..+....+ .+-++++.+|.....| +.+++..+.....
T Consensus 125 K~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 7899988877665 4889999999999988 7888877654433
No 316
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.49 E-value=3.5e+02 Score=23.97 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=46.1
Q ss_pred ehhhhhhcCCcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHHHHHHHHHHhcCCC
Q 017030 46 PMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125 (378)
Q Consensus 46 ~l~~l~~~gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~ 125 (378)
+++.|...|+++|.|++.|..+ +.+.+.+.+ -..|.+ .+.+...... ++.+...=+.+.+..+...+..
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~-v~~~~~~~l-~~~G~e----V~~~~~~~~~---~~~~ia~i~p~~i~~~~~~~~~-- 179 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPE-TSRPMAQYF-AVRGFE----IVNFTCLGLT---DDREMARISPDCIVEAALAAFD-- 179 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHH-HHHHHHHHH-HhCCcE----EeeeeccCCC---CCceeeecCHHHHHHHHHHhcC--
Confidence 4567778899999999987753 333333322 011211 1111110110 0111111234455444443322
Q ss_pred CCCCCeEEEEcCCeEEecCHHHHHHH
Q 017030 126 NKVIEDVLILSGDHLYRMDYMDFVQN 151 (378)
Q Consensus 126 ~~~~~~~lv~~gD~~~~~d~~~~l~~ 151 (378)
.+-+-+++.|-.+-..++-+-++.
T Consensus 180 --~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 180 --PDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred --CCCCEEEEeCCCchhHHHHHHHHH
Confidence 246778888888877775554543
No 317
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=28.34 E-value=2.9e+02 Score=22.36 Aligned_cols=6 Identities=33% Similarity=0.590 Sum_probs=2.2
Q ss_pred eEEecC
Q 017030 322 SIISHG 327 (378)
Q Consensus 322 s~Ig~~ 327 (378)
.+..++
T Consensus 51 ~v~s~~ 56 (146)
T COG1664 51 DVHSDG 56 (146)
T ss_pred EEEeCC
Confidence 333333
No 318
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=24.82 E-value=7.6 Score=35.06 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=42.5
Q ss_pred CeEEEEcCCeEEecCHHHHHHHHHHcCCcE------EEEEeecCCCCCCcceEEEECCCCCEEEEEecCCcc
Q 017030 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADI------TISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGK 195 (378)
Q Consensus 130 ~~~lv~~gD~~~~~d~~~~l~~h~~~~~~~------ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~ 195 (378)
.....-+||++...+...+++.|.++|... +-++..+.+ +.-+|++..++.+.+..+.+|+...
T Consensus 108 ~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~D--P~~lG~~~~~~~~~~~kvv~K~~~d 177 (266)
T cd04180 108 HLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVAD--PLFIGIAIQNRKAINQKVVPKTRNE 177 (266)
T ss_pred eeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccC--HHHHHHHHHcCCCEEEEEEECCCCC
Confidence 345556666666666667899999988762 233333322 4567777776677888999998754
No 319
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=24.26 E-value=4e+02 Score=22.01 Aligned_cols=105 Identities=10% Similarity=0.008 Sum_probs=53.9
Q ss_pred eeecCeeeeeeeehhhhhhcC-CcEEEEEeecChhhHHHHHHhhccCCCCcccCCceEEEeccccCCCcCCCccccCcHH
Q 017030 34 VPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (378)
Q Consensus 34 lpi~g~~pli~~~l~~l~~~g-i~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~Gt~~ 112 (378)
+|.-|....|..+|+.+.+.. --+|+|+-....+...+.++ .. ... ..+.++...... ...|-+.
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~-~~~------~~v~~i~~~~~~------~~~Gk~~ 68 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LA-ITD------SRVHLLRRHLPN------ARTGKGD 68 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-he-ecC------CcEEEEeccCCc------CCCCHHH
Confidence 455554356667777776643 23666665433343444443 10 000 013333211000 0137888
Q ss_pred HHHHHHHHhcCCC---C--CCCCeEEEEcCCeEEecC-HHHHHHHH
Q 017030 113 AVRQFHWLFEDPR---N--KVIEDVLILSGDHLYRMD-YMDFVQNH 152 (378)
Q Consensus 113 al~~~~~~i~~~~---~--~~~~~~lv~~gD~~~~~d-~~~~l~~h 152 (378)
++..++....... + ...+.++++.+|.....+ +..+....
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 8888877653100 0 002578999999998888 56654433
No 320
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=23.92 E-value=2e+02 Score=23.60 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=24.2
Q ss_pred eeehhhhhhcCCcEEEEEeecChhhHHHHHH
Q 017030 44 DVPMSNCINSGINKVYILTQYNSASLNRHLA 74 (378)
Q Consensus 44 ~~~l~~l~~~gi~~I~iv~~~~~~~i~~~l~ 74 (378)
+++++.|.+.|++.|+-+-+.....+.+.+.
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~ 34 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDALR 34 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHHHh
Confidence 4567889999999999998877666666653
No 321
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=23.47 E-value=4e+02 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHc
Q 017030 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (378)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~ 155 (378)
+-++++..+.+..+ .+.++++.+|.+...| +..++..+.+.
T Consensus 215 ~KAgnLN~al~~a~------gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 215 AKAGNINNALKHTD------GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CChHHHHHHHHhcC------CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 56788888877654 4899999999998888 67777765443
No 322
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=22.76 E-value=4.7e+02 Score=22.04 Aligned_cols=43 Identities=14% Similarity=-0.081 Sum_probs=29.9
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHHHHHHcC
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~~h~~~~ 156 (378)
.|.+.+.-.+..... .+.++++.+|.+...+ +..++....+..
T Consensus 70 ~G~~~a~N~g~~~a~------gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 70 KGVGYAKNQAIAQSS------GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 366777766655443 4899999999987777 677776655443
No 323
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=22.40 E-value=3.8e+02 Score=24.63 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=34.5
Q ss_pred cCcHHHHHHHHHHhcCCCCCCCCeEEEEcCCeE-EecC-HHHHHHHHHH-cCCcEEEEE
Q 017030 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQ-SGADITISC 163 (378)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~~-~~~d-~~~~l~~h~~-~~~~~ti~~ 163 (378)
.|.+.++..+....+ .+.++++.+|.. .+.+ +..+++.... .+.++....
T Consensus 101 ~Gkg~A~~~g~~~a~------gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAATT------GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhcC------CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 478888887766543 488999999996 6666 7788876653 344544443
No 324
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.81 E-value=72 Score=29.88 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=35.7
Q ss_pred cccceeEEEEcCCCCccccccc-------c---cCcc-----cceeecCeeeeeeeehhhhhhcCCcEEEEEe
Q 017030 5 DARTVAAVILGGGAGTRLYPLT-------K---QRAK-----PAVPIGGAYRLIDVPMSNCINSGINKVYILT 62 (378)
Q Consensus 5 ~~~~~~avIla~G~g~rl~plt-------~---~~pK-----~llpi~g~~pli~~~l~~l~~~gi~~I~iv~ 62 (378)
+++.|.++||.| .|+|..-.. . ..|. +++-+ .. |-|...++.|.+.|.++|+|+=
T Consensus 2 ~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~e-Psl~eal~~l~~~G~~~IvVvP 71 (335)
T PRK05782 2 DRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AE-PNWRSLLNEIIKEGYRRVIIAL 71 (335)
T ss_pred CCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CC-CCHHHHHHHHHHCCCCEEEEec
Confidence 567788999987 888853111 0 1111 12222 35 7888899999999999986653
No 325
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=21.79 E-value=69 Score=30.16 Aligned_cols=55 Identities=11% Similarity=0.222 Sum_probs=42.7
Q ss_pred cccccccccCcccceeecCeeeeeeeehhhhhhc-CCcEEEEEeecCh--hhHHHHHH
Q 017030 20 TRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS--ASLNRHLA 74 (378)
Q Consensus 20 ~rl~plt~~~pK~llpi~g~~pli~~~l~~l~~~-gi~~I~iv~~~~~--~~i~~~l~ 74 (378)
..|.|+..+.+.-++-|-+++..+.+.|+.|+++ ||.+..++.++.. +++.+.+.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 4566777777888888999977889999999885 9999999987654 45665553
No 326
>PHA02672 ORF110 EEV glycoprotein; Provisional
Probab=21.61 E-value=68 Score=25.86 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.5
Q ss_pred eeeCCCCeEeeeeeeeeeeEeeeC
Q 017030 355 SPANPLCRRIWKCSSLCSVICMTK 378 (378)
Q Consensus 355 sIi~~~~~~~~~~~~~~~~~~~~~ 378 (378)
|.+..+.-+.-+|.++--||||.|
T Consensus 140 cl~~~~g~~hh~c~~n~tvvc~k~ 163 (166)
T PHA02672 140 CLLSLDGLMHHNCNQNTTVVCVKK 163 (166)
T ss_pred EEEcCCcceecccccCceEEEehh
Confidence 788888899999999999999864
No 327
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=21.21 E-value=2.1e+02 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHhcCCCCCCCCeEEEEcCCeEEecC-HHHHHH
Q 017030 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQ 150 (378)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~~~~~d-~~~~l~ 150 (378)
.+.++..+....+ .+.++++.+|.+...+ +..+..
T Consensus 75 k~~a~n~g~~~a~------~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 75 KAGALAEGMKVAK------GEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred chHHHHHHHHhCC------CCEEEEEcCCCCCChHHHHHhhh
Confidence 4677777766554 5899999999988888 566444
Done!