BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017031
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
Length = 400
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 202/351 (57%), Gaps = 23/351 (6%)
Query: 29 EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 88
E +G R Q CL+EIR A ++ G + +H+AS NNFPT
Sbjct: 71 EEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNFPTAAGLASSA 128
Query: 89 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
CL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q
Sbjct: 129 AGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQ 185
Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP R+ +M I+
Sbjct: 186 VAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIR 245
Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
DF SFAQLT DSNQFHA CLDT PPI Y+N S RII V R+N G +VAYTFD
Sbjct: 246 ERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFD 305
Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
AGPNAV+ + +A E + + FPP S D + G++ + P
Sbjct: 306 AGPNAVIFTLDDTVA-EFVAAVWHGFPPGSNG--------------DTFLKGLQ-VRPAP 349
Query: 329 LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 378
L E+ ++ + G V Y I T+ G GP +L D LL P GLPK A
Sbjct: 350 LSAELQAALAMEPTPGGVKYIIVTQVGPGPQILDDPCAHLLGP-DGLPKPA 399
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
pdb|3F0N|B Chain B, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
Length = 414
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/351 (43%), Positives = 202/351 (57%), Gaps = 27/351 (7%)
Query: 29 EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXX 88
E +G R Q CL+EIR A TE G + K+H +AS NNFPT
Sbjct: 85 EEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNNFPTAAGLASSA 142
Query: 89 XXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
CL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q
Sbjct: 143 AGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQ 199
Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M IQ
Sbjct: 200 IAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQ 259
Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
DF FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N G +VAYTFD
Sbjct: 260 EQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFD 319
Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
AGPNAV+ +A E + + FPP + GDK +K ++ P
Sbjct: 320 AGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF---------LKGLQVAP 361
Query: 329 --LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
L E+ + + G V Y I T+ G GP +L D LL + GLP+
Sbjct: 362 VLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLG-QDGLPQ 411
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 190/353 (53%), Gaps = 31/353 (8%)
Query: 31 SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXXXXXXXX 90
S+ R QNCL+++R + E + + + W+ LHI S NNFPT
Sbjct: 89 SIDNERTQNCLRDLRQLRKEXESKDASLPTLSQ-WK---LHIVSENNFPTAAGLASSAAG 144
Query: 91 XXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLV 150
LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W GK +G DS AVQ+
Sbjct: 145 FAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEXGKAEDGHDSXAVQIA 204
Query: 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNH 210
D W + VVS +K+ SST G + +V TS L + R + VVPKR +AI
Sbjct: 205 DSSDWPQXKACVLVVSDIKKDVSSTQGXQLTVATSELFKERIEHVVPKRFEVXRKAIVEK 264
Query: 211 DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 270
DF++FA+ T DSN FHA CLD+ PPIFY NDTS RIIS+ N+ G VAYTFDAG
Sbjct: 265 DFATFAKETXXDSNSFHATCLDSFPPIFYXNDTSKRIISWCHTINQFYGETIVAYTFDAG 324
Query: 271 PNAVL--IARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
PNAVL +A N + +L P DK + +EA
Sbjct: 325 PNAVLYYLAENESKLFAFIYKLFGSVPG-----------WDKKFT-------TEQLEAFN 366
Query: 329 LPPEINNISAQ----KYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 377
E +N +A+ + DV I T+ G GP + +++L++ K+GLPKE
Sbjct: 367 HQFESSNFTARELDLELQKDVARVILTQVGSGP---QETNESLIDAKTGLPKE 416
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 165/323 (51%), Gaps = 24/323 (7%)
Query: 4 SASPLIPITSV-LPQPLPS-VLALTKIEISLGGG-RYQNCLKEIRSRACDVEDTEKGIKI 60
SASP TSV L + + L L E+ +G R Q+ L +RS C E K +
Sbjct: 42 SASPFRSKTSVELRDDIETDTLRLNGTEVDVGKTPRVQSMLLHLRS-TCPEELKNKKV-- 98
Query: 61 EKKDWQKLHLHIASFNNFPTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSG 120
+I S NNFPT + A L+ ++ + +S +AR GSG
Sbjct: 99 ----------NIVSENNFPTAAGMASSASGYCAMS---AALIRAFKSTTNVSMLARLGSG 145
Query: 121 SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 180
SACRS FGGFV W G++ +GSD +A Q VDE HW ++ ++ AV+ QK+ SST GM++
Sbjct: 146 SACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQ 205
Query: 181 SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYM 240
S++TS L++ R E VP+R+ AI+ DF++FA++ +S+ +C T P I Y
Sbjct: 206 SLKTSPLMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYA 265
Query: 241 NDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSET 300
+ S+ +I V+ +N G +AYTFDAG N L + E + L+ FP T
Sbjct: 266 TEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFLFVLKEDLP-EAVAMLMEHFP----T 320
Query: 301 DLNSYVLGDKSILRDAGIDGMKD 323
+ GD+ +L + + D
Sbjct: 321 PFEKFFFGDRELLEKVKVVSLPD 343
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 67 KLHLHIASFNNFPTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 126
+LH I S N PT L + + ++L + + LS +AR+GSGSA RS+
Sbjct: 92 RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSI 151
Query: 127 FGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETS 185
FGGF +W ++G+ + ++ W DL +I V++++ K+ SS +GM + +TS
Sbjct: 152 FGGFAEW---EKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTS 208
Query: 186 LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSH 245
Q+ V + + + +EA++N DF ++ A+ + HA L PP Y+ S+
Sbjct: 209 RFYQYWLDHV-DEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESY 267
Query: 246 RIISYVERWNRSVGSPQVAYTFDAGPNA-VLIARNRKIATELLQRLLFFF 294
++ VE+ R P +T DAGPN VL+ + K A ++++ L F
Sbjct: 268 DAMAIVEQC-RKANLP-CYFTMDAGPNVKVLVEKKNKQA--VMEQFLKVF 313
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 67 KLHLHIASFNNFPTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 126
+LH I S N PT L + + ++L + + LS +AR+GSGSA RS+
Sbjct: 92 RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSI 151
Query: 127 FGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETS 185
FGGF +W ++G+ + ++ W DL +I V++++ K+ S+ +GM + +TS
Sbjct: 152 FGGFAEW---EKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSARSGMSLTRDTS 208
Query: 186 LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSH 245
Q+ V + + + +EA++N DF ++ A+ + HA L PP Y+ S+
Sbjct: 209 RFYQYWLDHV-DEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESY 267
Query: 246 RIISYVERWNRSVGSPQVAYTFDAGPNA-VLIARNRKIATELLQRLLFFF 294
++ VE+ R P +T DAGPN VL+ + K A ++++ L F
Sbjct: 268 DAMAIVEQC-RKANLP-CYFTMDAGPNVKVLVEKKNKQA--VMEQFLKVF 313
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|C Chain C, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|D Chain D, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|E Chain E, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|F Chain F, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|G Chain G, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|H Chain H, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DU8|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DU8|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 10/230 (4%)
Query: 67 KLHLHIASFNNFPTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSL 126
+LH I S N PT L + + ++L + + LS +AR+GSGSA RS+
Sbjct: 92 RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGSGSASRSI 151
Query: 127 FGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKETSSTTGMRESVETS 185
FGGF +W ++G+ + ++ W DL +I V++++ K+ SS +GM + +TS
Sbjct: 152 FGGFAEW---EKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLTRDTS 208
Query: 186 LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSH 245
Q+ V + + + +EA++N DF ++ A+ + HA L PP Y+ S+
Sbjct: 209 RFYQYWLDH-VDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESY 267
Query: 246 RIISYVERWNRSVGSPQVAYTFDAGPNA-VLIARNRKIATELLQRLLFFF 294
++ VE+ R P +T AGPN VL+ + K A ++++ L F
Sbjct: 268 DAMAIVEQC-RKANLP-CYFTMAAGPNVKVLVEKKNKQA--VMEQFLKVF 313
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK2|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK3|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
pdb|2HK3|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
Length = 331
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 126/277 (45%), Gaps = 14/277 (5%)
Query: 25 LTKIEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTXXXX 84
LT+ + L G + E S+ D+ GI DW + I S N PT
Sbjct: 57 LTQDQFWLNGEKVSGKELEKISKYMDIVRNRAGI-----DW---YAEIESDNFVPTAAGL 108
Query: 85 XXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 144
L + + ++++ + LS +AR GSGSA RS++GGF +W G + S
Sbjct: 109 ASSASAYAALAAACNQALDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGY--SDETS 166
Query: 145 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 204
AV L +DL +I V++ K+ S GM + TS Q+ + + + + +
Sbjct: 167 YAVPLESNHFEDDLAMIFVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDH-IDEDLAEAK 225
Query: 205 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 264
AIQ+ DF ++ + + HA L ++PP Y+ S+ +++ V R G P
Sbjct: 226 AAIQDKDFKRLGEVIEENGLRMHATNLGSTPPFTYLVQESYDVMALVHE-CREAGYP-CY 283
Query: 265 YTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETD 301
+T DAGPN V I +K +++ +LL F N D
Sbjct: 284 FTMDAGPN-VKILVEKKNKQQIIDKLLTQFDNNQIID 319
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
pdb|3LTO|B Chain B, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
Length = 323
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 106 ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV 165
+ Q+QLS R GSGS+CRS + + W G A+ L + DL+ + V+
Sbjct: 137 DEQAQLS---RLGSGSSCRSFYAPWALW------TGDKVSAIDLP----YKDLLHQVIVI 183
Query: 166 SSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQ 225
SS++KE S + V+TS + R+ E + + A +N D++S Q+ +
Sbjct: 184 SSQEKEIPSRVAHK-LVKTSPFYETRS-ERAEANLKLLLNAFENKDWTSIYQICWHEFLD 241
Query: 226 FHAVCLDTSPPIFYMNDTSHRIISYVER-WNRSVGSPQVAYTFDAGPNAVLIARN 279
H + P Y+ D + I+S +E+ WN P V T DAGPN L+ R+
Sbjct: 242 XHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVV--TXDAGPNVHLLYRS 294
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From
Streptococcus Pyogenes
Length = 317
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 19/218 (8%)
Query: 76 NNFPTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWIL 135
NN PT LV + +L + + +Q L+ A+ SGS+ RS FG W
Sbjct: 99 NNXPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASGSSSRSFFGPVAAW-- 156
Query: 136 GKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEV 195
DS A+ V+ + I V+++ +K SS G + +TS +
Sbjct: 157 -----DKDSGAIYKVETDL--KXAXIXLVLNAAKKPISSREGXKLCRDTSTTFD----QW 205
Query: 196 VPKRIVQMEEA---IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVE 252
V + + + ++ ++F QLT A++ HA +PP Y+ S++ V+
Sbjct: 206 VEQSAIDYQHXLTYLKTNNFEKVGQLTEANALAXHATTKTANPPFSYLTKESYQAXEAVK 265
Query: 253 RWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRL 290
R G +T DAGPN ++ + +A +L +RL
Sbjct: 266 EL-RQEGFA-CYFTXDAGPNVKVLCLEKDLA-QLAERL 300
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 343 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 373
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 343 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 373
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 343 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 373
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 291 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 329
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPL 193
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 291 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 329
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPL 193
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 291 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 329
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGFTYLLSRAGVTGAENRAALPL 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,742,483
Number of Sequences: 62578
Number of extensions: 423875
Number of successful extensions: 775
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 19
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)