BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017031
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum
GN=mvd PE=3 SV=1
Length = 391
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 216/344 (62%), Gaps = 30/344 (8%)
Query: 36 RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLV 95
RYQN LK IRSRA + D +K +HIAS NNFPTAAGLASSA+G+ CLV
Sbjct: 74 RYQNVLKMIRSRATKLMD------------KKHCVHIASINNFPTAAGLASSASGYCCLV 121
Query: 96 FSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW 155
F+LA++ + +S IAR GSGSACRS++GGFVKW +G + +GSDS+AVQ+ E HW
Sbjct: 122 FTLAQMYGV---DGDISGIARLGSGSACRSMYGGFVKWEMGTKDDGSDSIAVQVQPESHW 178
Query: 156 NDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSF 215
D+ II+ VV+ ++KETSST GM++S TS++++ R VP R+ +EEAI DF +F
Sbjct: 179 PDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAVTVPNRMRDIEEAINKKDFQTF 238
Query: 216 AQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 275
+T DS+ FH VC T+PPI+Y+NDTS I++ + R+N+ GS + AYTFDAGPNA
Sbjct: 239 GDITMKDSDDFHEVCATTTPPIYYLNDTSRYIMNLIHRYNKLSGSIKCAYTFDAGPNAC- 297
Query: 276 IARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP--LPPEI 333
I + TE+L + FP + D+ +Y G K + I+ E L P+
Sbjct: 298 IYLPAESTTEVLSLFMKHFPGD---DMQTYYRGPKENI--PSIENFVPSEKLASLYTPDT 352
Query: 334 NNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 377
+++ K Y + T+ G GP +LS +S++L++ +GLPK+
Sbjct: 353 TFVNSLK------YILHTKVGPGPQILS-ESESLIDNTTGLPKQ 389
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1
Length = 400
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 214/351 (60%), Gaps = 23/351 (6%)
Query: 29 EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSA 88
E +G R Q CL+EIR A ++ G + +H+AS NNFPTAAGLASSA
Sbjct: 71 EEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNFPTAAGLASSA 128
Query: 89 AGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
AG+ACL ++LA++ + +S LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q
Sbjct: 129 AGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQ 185
Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
+ E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP R+ +M I+
Sbjct: 186 VAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIR 245
Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
DF SFAQLT DSNQFHA CLDT PPI Y+N S RII V R+N G +VAYTFD
Sbjct: 246 ERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFD 305
Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
AGPNAV+ + +A E + + FPP S D + G++ + P
Sbjct: 306 AGPNAVIFTLDDTVA-EFVAAVWHGFPPGSNG--------------DTFLKGLQ-VRPAP 349
Query: 329 LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 378
L E+ ++ + G V Y I T+ G GP +L D LL P GLPK A
Sbjct: 350 LSAELQAALAMEPTPGGVKYIIVTQVGPGPQILDDPCAHLLGP-DGLPKPA 399
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2
Length = 401
Score = 268 bits (684), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 215/351 (61%), Gaps = 27/351 (7%)
Query: 29 EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSA 88
E +G R Q CL+EIR A TE G + K+H +AS NNFPTAAGLASSA
Sbjct: 72 EEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNNFPTAAGLASSA 129
Query: 89 AGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
AG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q
Sbjct: 130 AGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQ 186
Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
+ E HW L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M IQ
Sbjct: 187 IAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQ 246
Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
DF FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N G +VAYTFD
Sbjct: 247 EQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHQGQTKVAYTFD 306
Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
AGPNAV+ +A E + + FPP + GDK +K ++ P
Sbjct: 307 AGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF---------LKGLQVAP 348
Query: 329 --LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
L E+ ++ + G V Y I T+ G GP +L D LL + GLP+
Sbjct: 349 VLLSDELKAALAVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLG-QDGLPQ 398
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1
Length = 400
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 217/344 (63%), Gaps = 26/344 (7%)
Query: 36 RYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACL 94
R Q+CL EIR A ++T + + K +HI S NNFPTAAGLASSAAG+ACL
Sbjct: 80 RLQSCLLEIRRLAQRRKNTGDPASDVSNK------VHICSVNNFPTAAGLASSAAGYACL 133
Query: 95 VFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEH 154
V++L++L N+ + +LS +ARQGSGSACRSL+GGFV+W LG++ +G DS+A Q+ E +
Sbjct: 134 VYTLSQLFNV---EGELSGVARQGSGSACRSLYGGFVQWKLGEQSDGKDSIAEQVASELY 190
Query: 155 WNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSS 214
W +L ++I VVS+ QK ST+GM SVETS LL++RA VVP R+ +M AI+ DF
Sbjct: 191 WPELRVLILVVSAEQKSVGSTSGMHTSVETSHLLKYRADAVVPGRMEEMIRAIRLRDFPK 250
Query: 215 FAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAV 274
F +LT DSNQFHA+CLDT PPIFY+N+ SH+IIS V R+N+ G +VAYTFDAGPNAV
Sbjct: 251 FGELTMKDSNQFHAICLDTYPPIFYLNNISHQIISLVHRYNQYYGETRVAYTFDAGPNAV 310
Query: 275 LIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN 334
+ + + E ++ + FFPP E + + G D + ++DI P P
Sbjct: 311 IYSLQDYLP-EFVEVVRHFFPP--EVNEEEFFKGLPVCPADLSEEMIRDINMKPTP---- 363
Query: 335 NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 378
+ Y I T+ G GP ++ D + LL GLPK++
Sbjct: 364 --------NGIRYMISTKAGPGPRVVEDPNLHLLG-ADGLPKKS 398
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2
SV=1
Length = 401
Score = 264 bits (675), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 214/351 (60%), Gaps = 27/351 (7%)
Query: 29 EISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSA 88
E +G R Q CL+EIR A T G + K+H +AS NNFPTAAGLASSA
Sbjct: 72 EEDVGQPRLQACLREIRRLARKRRSTGDGDALPLSLGYKVH--VASVNNFPTAAGLASSA 129
Query: 89 AGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQ 148
AG+ACL ++LA++ + + LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q
Sbjct: 130 AGYACLAYTLARVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQ 186
Query: 149 LVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQ 208
+ E HW L ++I VVS+ +K T ST GM+ SV TS LL+ RA+ +VP+R+ +M IQ
Sbjct: 187 IAPEWHWPQLRVLILVVSAEKKPTGSTVGMQTSVATSTLLKFRAESIVPERMKEMTRCIQ 246
Query: 209 NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFD 268
DF +FAQLT DSNQFHA CLDT PPI Y+NDTS RII V R+N G +VAYTFD
Sbjct: 247 EQDFQAFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNAHHGQTKVAYTFD 306
Query: 269 AGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
AGPNAV+ +A E + + FPP + GDK +K ++ P
Sbjct: 307 AGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF---------LKGLQVAP 348
Query: 329 --LPPEI-NNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
L E+ +++ + G V Y I T+ G GP +L D LL P GLP+
Sbjct: 349 VLLSDELKTSLATEPSPGGVQYIIATQVGPGPQVLDDPHHHLLGP-DGLPQ 398
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1
Length = 400
Score = 258 bits (660), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 211/354 (59%), Gaps = 29/354 (8%)
Query: 29 EISLGGGRYQNCLKEIR----SRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 84
E +G R Q CL+EIR R D + + + K +H+AS NNFPTAAGL
Sbjct: 71 EEDMGHPRLQACLREIRRLARKRRSDGHEDPLPLSLSYK------VHVASENNFPTAAGL 124
Query: 85 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 144
ASSAAG+ACL ++LA++ + S LS +AR+GSGSACRSL+GGFV+W +G+ +G DS
Sbjct: 125 ASSAAGYACLAYTLARVYGV---DSDLSEVARRGSGSACRSLYGGFVEWQMGERPDGKDS 181
Query: 145 LAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME 204
+A Q+ E HW +L ++I VVS+ +K ST GM+ SVETS LL+ RA+ +VP R+ +M
Sbjct: 182 VACQVAPESHWPELRVLILVVSAERKPMGSTAGMQTSVETSALLKFRAEALVPPRMAEMT 241
Query: 205 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVA 264
I+ +F +F QLT DSNQFHA CLDT PPI Y++DTS RII V R+N G +VA
Sbjct: 242 RCIRERNFQAFGQLTMKDSNQFHATCLDTFPPISYLSDTSRRIIQLVHRFNAHHGQTKVA 301
Query: 265 YTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDI 324
YTFDAGPNAV+ + +A E + + FPP S D L + +L + + +
Sbjct: 302 YTFDAGPNAVVFTLDDTVA-EFVAAVRHSFPPESNGDKFLKGLPVEPVLLSDELKAVLGM 360
Query: 325 EALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 378
+ +P G + Y I T+ G GP +L D LL P GLPK A
Sbjct: 361 DPVP--------------GSIRYIIATQVGPGPQVLDDPGAHLLGP-DGLPKPA 399
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2
Length = 396
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 209/353 (59%), Gaps = 31/353 (8%)
Query: 31 SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAG 90
S+ R QNCL+++R ++E + + + W+ LHI S NNFPTAAGLASSAAG
Sbjct: 69 SIDNERTQNCLRDLRQLRKEMESKDASLPTLSQ-WK---LHIVSENNFPTAAGLASSAAG 124
Query: 91 FACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLV 150
FA LV ++AKL L ++ S++S IAR+GSGSACRSLFGG+V W +GK +G DS+AVQ+
Sbjct: 125 FAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDSMAVQIA 184
Query: 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNH 210
D W + + VVS +K+ SST GM+ +V TS L + R + VVPKR M +AI
Sbjct: 185 DSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEK 244
Query: 211 DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 270
DF++FA+ T DSN FHA CLD+ PPIFYMNDTS RIIS+ N+ G VAYTFDAG
Sbjct: 245 DFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG 304
Query: 271 PNAVL--IARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP 328
PNAVL +A N + +L P DK + +EA
Sbjct: 305 PNAVLYYLAENESKLFAFIYKLFGSVPG-----------WDKKFTTE-------QLEAFN 346
Query: 329 LPPEINNISAQ----KYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 377
E +N +A+ + DV I T+ G GP + +++L++ K+GLPKE
Sbjct: 347 HQFESSNFTARELDLELQKDVARVILTQVGSGP---QETNESLIDAKTGLPKE 396
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MVD1 PE=3 SV=2
Length = 388
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/346 (45%), Positives = 209/346 (60%), Gaps = 30/346 (8%)
Query: 31 SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAG 90
SL R + CL ++R+ ++E + I + +HI S NNFPTAAGLASSAAG
Sbjct: 69 SLESERTKACLADLRTLRKELESNDSSIP----KLSQFGVHIVSENNFPTAAGLASSAAG 124
Query: 91 FACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLV 150
FA LV S+AKL L +N S++S IAR+GSGSACRSLFGG+V W +G+E NG DS AV++
Sbjct: 125 FAALVVSIAKLYELPQNMSEISKIARKGSGSACRSLFGGYVAWEMGQETNGEDSKAVEVA 184
Query: 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNH 210
HW ++ I VVS +K+T ST+GM+ +V TS L Q R KEVVPKR M+++I
Sbjct: 185 PLSHWPNMKAAILVVSDDKKDTPSTSGMQTTVATSDLFQWRIKEVVPKRFDDMKDSILRK 244
Query: 211 DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 270
DF++F LT DSN FHAVCLD++PPIFY+NDTS +II + N+ G AYTFDAG
Sbjct: 245 DFATFGDLTMKDSNSFHAVCLDSTPPIFYLNDTSKKIIKLIHELNKREGKIIAAYTFDAG 304
Query: 271 PNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLP 330
PNAV I ++ +++L + +F S V G + L +D DI+A P
Sbjct: 305 PNAV-IYYEQENESKVLGVIYKYF---------SKVSGWEK-LDTKTLDTTSDIQADP-- 351
Query: 331 PEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
+ Y G V+ I T G GP S++L+N K GLPK
Sbjct: 352 --------ELYKG-VSKIILTEVGQGP---QGSSESLINDK-GLPK 384
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1
PE=3 SV=2
Length = 397
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 157/350 (44%), Positives = 209/350 (59%), Gaps = 25/350 (7%)
Query: 31 SLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAG 90
SLG R Q CL ++R+ +E E + +W+ LHI S NNFPTAAGLASSAAG
Sbjct: 69 SLGNARTQQCLADLRALRRALETEEPDLP-RMSEWK---LHIVSENNFPTAAGLASSAAG 124
Query: 91 FACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLV 150
FA LV ++AKL L ++ S++S IAR+GSGSACRSL+GG+V W +G E +GSDS AVQ+
Sbjct: 125 FAALVVAVAKLYGLPQDYSEISKIARKGSGSACRSLYGGYVAWEMGAEADGSDSRAVQIA 184
Query: 151 DEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNH 210
D EHW ++ I VVS+ +K+T ST+GM+++V TS L + R VVP+R +M AI+
Sbjct: 185 DVEHWPEMRAAILVVSADRKDTPSTSGMQQTVHTSDLFKERVATVVPRRYGEMAAAIRAR 244
Query: 211 DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 270
DF++FA+LT DSN FHA CLD+ PPIFYMNDTS RI+ N VAYTFDAG
Sbjct: 245 DFATFARLTMQDSNSFHATCLDSFPPIFYMNDTSRRIVKLCHLINEFYNETIVAYTFDAG 304
Query: 271 PNAVL--IARNRKIATELLQRLLFFFPPNS--ETDLNSYVLGDKSILRDAGIDGMKDIEA 326
PNAVL +A N L L F N ET ++ + D + G A
Sbjct: 305 PNAVLYYLAENE---ARLCGFLSAVFGANDGWETTFSTEQRATFAAQFDECVRGKL---A 358
Query: 327 LPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
L E++ A+ I T+ G GP D +L++P++GLP+
Sbjct: 359 TDLDDELHRGVAR--------LIFTKVGPGP---QDTKSSLIDPETGLPR 397
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1
Length = 393
Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 207/344 (60%), Gaps = 35/344 (10%)
Query: 36 RYQNCLKEIRSRACDVEDTEKGIKIEKKDWQK---LHLHIASFNNFPTAAGLASSAAGFA 92
R + C++E+R D+E+ E D K L LH+ S NNFPTAAGLASSAAG+A
Sbjct: 77 RLRVCVEELRKARLDLEE-------ENDDLDKIGALKLHVVSENNFPTAAGLASSAAGYA 129
Query: 93 CLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDE 152
++A+L +L +QLS IARQGSGSACRSLFGG+V W +G+ +G+DS+AVQ+
Sbjct: 130 AFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMGELHSGADSVAVQVEPV 189
Query: 153 EHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDF 212
E+W ++ + + V S+ +K SST GM+ +V +S L QHR + +VP+RI +M+ AI+ DF
Sbjct: 190 ENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQEMKTAIRERDF 249
Query: 213 SSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN 272
+FA+LT DSNQFHA CLDT PPIFY+NDTS +I VE N + G AYTFDAGPN
Sbjct: 250 ETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINATAGKTIAAYTFDAGPN 309
Query: 273 AVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPE 332
AV ++F NSE LN+ ++ ++A +G + P
Sbjct: 310 AV----------------IYFLEENSEIVLNTLY----AVTKNA--EGWSK-QYGSSPVT 346
Query: 333 INNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 376
+++ +A S ++ I TR G GP +L+ D L SG PK
Sbjct: 347 VDSAAANIVSSGISRVILTRVGNGPRVLTIDES--LIDASGNPK 388
>sp|Q8R765|ISPE_THETN 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=ispE PE=3 SV=1
Length = 287
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 70 LHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGG 129
+ I F N P AAGLA +A A + +L KL NL + ++ IA + L GG
Sbjct: 83 IKIKLFKNIPLAAGLAGGSADAAATIVALDKLWNLNLTEKEMEEIASEVGSDVPFCLKGG 142
>sp|B2TIX0|CH60_CLOBB 60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=groL PE=3 SV=1
Length = 540
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 33 GGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIAS 74
GG Y N +KE+ DV+DTE GIKI K ++ IAS
Sbjct: 413 GGTAYINVIKEVEKLTSDVQDTELGIKIIVKSLEEPLRQIAS 454
>sp|Q8U0F3|KIME_PYRFU Mevalonate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=mvk PE=3 SV=1
Length = 334
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 60 IEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIAR--- 116
+E+ D + + + ++ + P AGL SSAA + +++KL+ L+ ++ +++ +
Sbjct: 91 LEEADKKNVGIKVSITSQIPVGAGLGSSAAVAVATIGAVSKLLGLELSKEEIAKMGHKTE 150
Query: 117 ---QGSGSACR---SLFGGFVKWILGK 137
QG+ S S GGF+ + GK
Sbjct: 151 LLVQGASSGIDPTVSAIGGFIFYEKGK 177
>sp|A4XLL8|ISPE_CALS8 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=ispE PE=3 SV=1
Length = 290
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 63 KDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSA 122
K+ K+H+ N P +AGLA + A ++ L KL L +Q++L + R+
Sbjct: 80 KEGVKIHIQ----KNIPISAGLAGGSTDAAAVLRGLNKLFGLNLSQNELIELGREIGADV 135
Query: 123 CRSLFGG 129
L GG
Sbjct: 136 PFCLVGG 142
>sp|Q558Y6|PKS14_DICDI Probable polyketide synthase 14 OS=Dictyostelium discoideum GN=pks14
PE=3 SV=2
Length = 2998
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 244 SHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPN 297
S+R++ + R+ +S+G P + + + +A L++RN IA L + L+ P N
Sbjct: 2362 SNRVLDSLSRYRKSIGLPSICTNYGSVQSAGLVSRNESIAQLLDGQGLYPLPIN 2415
>sp|P0CV95|NES2_FRAAN (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial
OS=Fragaria ananassa PE=1 SV=1
Length = 578
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 35 GRYQNCLKEIRSRACDVEDT-EKGIKIEKKDWQKLHLHIASFNNFPTAAGLAS 86
G Y C E C +E+ EK I + +W+KL+ + S N FP LAS
Sbjct: 491 GSYVRCYLE-EHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATITLAS 542
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,794,021
Number of Sequences: 539616
Number of extensions: 5785219
Number of successful extensions: 14193
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14157
Number of HSP's gapped (non-prelim): 21
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)